General transcription factor II-I repeat domain-containing protein 2B

Overview
NameGeneral transcription factor II-I repeat domain-containing protein 2B
Smed IDSMED30033084
Length (bp)2836
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of General transcription factor II-I repeat domain-containing protein 2B (SMED30033084) t-SNE clustered cells

Violin plots show distribution of expression levels for General transcription factor II-I repeat domain-containing protein 2B (SMED30033084) in cells (dots) of each of the 12 neoblast clusters.

 

back to top

 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of General transcription factor II-I repeat domain-containing protein 2B (SMED30033084) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for General transcription factor II-I repeat domain-containing protein 2B (SMED30033084) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top

 

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020



SMED30033084

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 3

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
cilated neuronSMED30033084h1SMcG0006251 dd_Smed_v4_49401_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
reproductive organSMED30033084h1SMcG0006251 Contig19815newmark_estsPMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
reproductive organSMED30033084h1SMcG0006251 Contig19815uc_Smed_v2PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2B vs. Ensembl Human
Match: ZBED9 (zinc finger BED-type containing 9 [Source:HGNC Symbol;Acc:HGNC:13851])

HSP 1 Score: 53.1434 bits (126), Expect = 1.316e-17
Identity = 27/63 (42.86%), Postives = 41/63 (65.08%), Query Frame = -1 
Query:  371 LSQ*NQAVVRASYIVALRILQSKKPHAVAEKLIIPCFKDIVCCMIGEDAEKKLNYILLTYDTI 559
            +S  N + +RASY VAL + +SK P+ +AE L+  C K++   M+GE A KK+  + L+ DTI
Sbjct:  812 VSHINISALRASYKVALPVAKSKTPYTIAETLVKDCIKEVCLEMLGESAAKKVAQVPLSNDTI 874

HSP 2 Score: 44.669 bits (104), Expect = 1.316e-17
Identity = 25/83 (30.12%), Postives = 46/83 (55.42%), Query Frame = -3 
Query:  117 RMADMGHDIKMQVVSEIRAALLKKIAIQLDESTYAASCTQRLVFIRYIKDGDFKEEFLFFHVLKSTNKAKNVLTVVSSFFHNK 365
            R+ ++ +D++ Q++ +I+ A  K  ++QLDE    A+    LV++R+  D D KEEF F   L +   +  +   V ++  NK
Sbjct:  877 RIQELANDMEDQLIEQIKLA--KYFSLQLDECRDIANMIILLVYVRFEHDDDIKEEFFFSASLPTNTTSSELYEAVKNYIVNK 957

HSP 3 Score: 32.7278 bits (73), Expect = 1.316e-17
Identity = 24/70 (34.29%), Postives = 33/70 (47.14%), Query Frame = -3 
Query:  636 RVYDAIYIEYGFKSVVKNNGKIPQXXXXXXXXXXXXXXVYRSIQQ*HFFISILSKASMKPSFLKRHL*SR 845
            R YD  YIE+GF +V+      PQC++C                       +L+  +MKPS LKRHL S+
Sbjct:  735 RKYDPSYIEFGFVAVIDGEVLKPQCIICG---------------------DVLANEAMKPSKLKRHLYSK 783
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2B vs. Ensembl Human
Match: ZBED9 (zinc finger BED-type containing 9 [Source:HGNC Symbol;Acc:HGNC:13851])

HSP 1 Score: 53.1434 bits (126), Expect = 1.354e-17
Identity = 27/64 (42.19%), Postives = 41/64 (64.06%), Query Frame = -1 
Query:  371 QLSQ*NQAVVRASYIVALRILQSKKPHAVAEKLIIPCFKDIVCCMIGEDAEKKLNYILLTYDTI 562
             +S  N + +RASY VAL + +SK P+ +AE L+  C K++   M+GE A KK+  + L+ DTI
Sbjct:  660 NVSHINISALRASYKVALPVAKSKTPYTIAETLVKDCIKEVCLEMLGESAAKKVAQVPLSNDTI 723

HSP 2 Score: 44.669 bits (104), Expect = 1.354e-17
Identity = 25/83 (30.12%), Postives = 46/83 (55.42%), Query Frame = -3 
Query:  117 RMADMGHDIKMQVVSEIRAALLKKIAIQLDESTYAASCTQRLVFIRYIKDGDFKEEFLFFHVLKSTNKAKNVLTVVSSFFHNK 365
            R+ ++ +D++ Q++ +I+ A  K  ++QLDE    A+    LV++R+  D D KEEF F   L +   +  +   V ++  NK
Sbjct:  726 RIQELANDMEDQLIEQIKLA--KYFSLQLDECRDIANMIILLVYVRFEHDDDIKEEFFFSASLPTNTTSSELYEAVKNYIVNK 806

HSP 3 Score: 32.7278 bits (73), Expect = 1.354e-17
Identity = 24/70 (34.29%), Postives = 33/70 (47.14%), Query Frame = -3 
Query:  636 RVYDAIYIEYGFKSVVKNNGKIPQXXXXXXXXXXXXXXVYRSIQQ*HFFISILSKASMKPSFLKRHL*SR 845
            R YD  YIE+GF +V+      PQC++C                       +L+  +MKPS LKRHL S+
Sbjct:  584 RKYDPSYIEFGFVAVIDGEVLKPQCIICG---------------------DVLANEAMKPSKLKRHLYSK 632
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2B vs. Ensembl Human
Match: FAM200A (family with sequence similarity 200 member A [Source:HGNC Symbol;Acc:HGNC:25401])

HSP 1 Score: 42.743 bits (99), Expect = 1.221e-9
Identity = 21/60 (35.00%), Postives = 36/60 (60.00%), Query Frame = -3 
Query:  192 SARMADMGHDIKMQVVSEIRAALLKKIAIQLDESTYAASCTQRLVFIRYIKDGDFKEEFL 371
            S R+  +   ++  +++ +++ +    AIQLDEST  ASC   LV++RY+   DF E+ L
Sbjct:  116 SRRICTIAKHLEAMLITRLQSGI--DFAIQLDESTDIASCPTLLVYVRYVWQDDFVEDLL 173

HSP 2 Score: 41.2022 bits (95), Expect = 1.221e-9
Identity = 21/59 (35.59%), Postives = 35/59 (59.32%), Query Frame = -1 
Query:  371 NQAVVRASYIVALRILQSKKPHAVAEKLIIPCFKDIVCCMIGEDAEKKLNYILLTYDTI 547
            N+  + +SY+VA R+ + K  H  AEK+I+P   D+V  +  + +  KL  I L+ +TI
Sbjct:   57 NERALLSSYLVAYRVAKEKMAHTAAEKIILPACMDMVRTIFDDKSADKLRTIPLSDNTI 115
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2B vs. Ensembl Human
Match: FAM200A (family with sequence similarity 200 member A [Source:HGNC Symbol;Acc:HGNC:25401])

HSP 1 Score: 42.743 bits (99), Expect = 1.316e-9
Identity = 21/60 (35.00%), Postives = 36/60 (60.00%), Query Frame = -3 
Query:  192 SARMADMGHDIKMQVVSEIRAALLKKIAIQLDESTYAASCTQRLVFIRYIKDGDFKEEFL 371
            S R+  +   ++  +++ +++ +    AIQLDEST  ASC   LV++RY+   DF E+ L
Sbjct:  116 SRRICTIAKHLEAMLITRLQSGI--DFAIQLDESTDIASCPTLLVYVRYVWQDDFVEDLL 173

HSP 2 Score: 41.2022 bits (95), Expect = 1.316e-9
Identity = 21/59 (35.59%), Postives = 35/59 (59.32%), Query Frame = -1 
Query:  371 NQAVVRASYIVALRILQSKKPHAVAEKLIIPCFKDIVCCMIGEDAEKKLNYILLTYDTI 547
            N+  + +SY+VA R+ + K  H  AEK+I+P   D+V  +  + +  KL  I L+ +TI
Sbjct:   57 NERALLSSYLVAYRVAKEKMAHTAAEKIILPACMDMVRTIFDDKSADKLRTIPLSDNTI 115
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2B vs. Ensembl Human
Match: ZBED5 (zinc finger BED-type containing 5 [Source:HGNC Symbol;Acc:HGNC:30803])

HSP 1 Score: 44.669 bits (104), Expect = 1.722e-9
Identity = 22/59 (37.29%), Postives = 33/59 (55.93%), Query Frame = -1 
Query:  371 NQAVVRASYIVALRILQSKKPHAVAEKLIIPCFKDIVCCMIGEDAEKKLNYILLTYDTI 547
            N++   ASY V+  I  S + H + E LI PC KD+V  M  E   KK++ + L+  T+
Sbjct:  190 NESATEASYNVSYHIALSGEAHTIGELLIKPCAKDVVMRMFDEQYSKKIDAVQLSNSTV 248

HSP 2 Score: 38.891 bits (89), Expect = 1.722e-9
Identity = 22/81 (27.16%), Postives = 40/81 (49.38%), Query Frame = -3 
Query:  123 RMADMGHDIKMQVVSEIRAALLKKIAIQLDESTYAASCTQRLVFIRYIKDGDFKEEFLFFHVLKSTNKAKNVLTVVSSFFH 365
            R+ D+  DI+ ++V   R  +    ++QLDES   +     LVF+RY  +   +E+ L    L+S    + +   ++SF  
Sbjct:  251 RIKDLAADIEEELV--CRLKICDGFSLQLDESADVSGLAVLLVFVRYRFNKSIEEDLLLCESLQSNATGEEIFNCINSFMQ 329
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2B vs. Ensembl Mouse
Match: Zbed5 (zinc finger, BED type containing 5 [Source:MGI Symbol;Acc:MGI:1919220])

HSP 1 Score: 81.6481 bits (200), Expect = 2.529e-15
Identity = 82/257 (31.91%), Postives = 122/257 (47.47%), Query Frame = -3 
Query:  126 KKRVYDAIYIEYGFKSVVKNNGKIPQXXXXXXXXXXXXXXVYRSIQQ*HFFISILSKASMKPSFLKRHL*SRRNRKGCIFLQADGG*NKINSSQYRT-AQSIKXXXXSCIVHSGTENSAIKETTCC-----RREANYPLF*RYCLLHDWRRR-----GKE--T*LHSSNI*HNSAR--MADMGHDIKMQVVSEIRAALLKKIAIQLDESTYAASCTQRLVFIRYIKDGDFKEEFLFFHVLKSTNKAKNVLTVVSSFF 851
            K+R Y+  +++YGF S +    + PQCV+C                       +LS  SMKP+ LKRH  S+ +     F   D       ++ +R+ A  +K +       S  +N A  ET+        R+     F  + L    + R     G E  T L + ++ +++ R  + DM  DI  QVV EI++A L   +IQLDEST  A+C Q +V++RYI DGDFK+EFL    L+ T  A +V   V SF 
Sbjct:  165 KRRKYNEGFLQYGFTSTITVGIERPQCVICGV---------------------VLSAESMKPNKLKRHFESKHSS----FAGKD-------TNYFRSKADGLKKARPDTGSKSNKQNVAAVETSYLVALRIARDMKPHTFAEHLLFPVAKDRVRVMIGDEFVTKLSAVSLSNDTVRRRIHDMSADILDQVVQEIKSAPLPICSIQLDESTDVANCLQLMVYVRYINDGDFKDEFLCCKPLERTATALDVFEAVDSFL 389

HSP 2 Score: 59.3066 bits (142), Expect = 2.215e-8
Identity = 35/86 (40.70%), Postives = 50/86 (58.14%), Query Frame = -1 
Query:  371 KDASFFKPMEVRIK*ILHNTGQLS-Q*NQAVVRASYIVALRILQSKKPHAVAEKLIIPCFKDIVCCMIGEDAEKKLNYILLTYDTI 625
            KD ++F+     +K    +TG  S + N A V  SY+VALRI +  KPH  AE L+ P  KD V  MIG++   KL+ + L+ DT+
Sbjct:  222 KDTNYFRSKADGLKKARPDTGSKSNKQNVAAVETSYLVALRIARDMKPHTFAEHLLFPVAKDRVRVMIGDEFVTKLSAVSLSNDTV 307
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2B vs. Ensembl Mouse
Match: Zmym6 (zinc finger, MYM-type 6 [Source:MGI Symbol;Acc:MGI:106505])

HSP 1 Score: 41.2022 bits (95), Expect = 5.352e-9
Identity = 20/58 (34.48%), Postives = 37/58 (63.79%), Query Frame = -1 
Query:  371 QAVVRASYIVALRILQSKKPHAVAEKLIIPCFKDIVCCMIGEDAEKKLNYILLTYDTI 544
            +++V+ASY++A +I    KP ++AE+LI P   ++   ++G  A +K+  I L+  TI
Sbjct:  750 ESLVKASYLIAFQIAARNKPFSIAEELIKPYLVEMCSEVLGSSAGEKMKTIPLSNSTI 807

HSP 2 Score: 40.0466 bits (92), Expect = 5.352e-9
Identity = 23/85 (27.06%), Postives = 46/85 (54.12%), Query Frame = -3 
Query:  117 RMADMGHDIKMQVVSEIRAALLKKIAIQLDESTYAASCTQRLVFIRYI--KDGDFKEEFLFFHVLKSTNKAKNVLTVVSSFFHNK 365
            R+  +  DI+ Q++ ++R +  +  A+Q+DES+ A      L ++R+I    GD KEE LF   + S +    V  +++ +  ++
Sbjct:  810 RIKKLSDDIEDQLLQKVRES--RWFALQVDESSEATEVPLLLCYVRFIDYDRGDVKEELLFCTEMPSPSTDLEVFELINKYIDSR 892
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2B vs. Ensembl Mouse
Match: Zmym6 (zinc finger, MYM-type 6 [Source:MGI Symbol;Acc:MGI:106505])

HSP 1 Score: 41.2022 bits (95), Expect = 5.365e-9
Identity = 20/58 (34.48%), Postives = 37/58 (63.79%), Query Frame = -1 
Query:  371 QAVVRASYIVALRILQSKKPHAVAEKLIIPCFKDIVCCMIGEDAEKKLNYILLTYDTI 544
            +++V+ASY++A +I    KP ++AE+LI P   ++   ++G  A +K+  I L+  TI
Sbjct:  658 ESLVKASYLIAFQIAARNKPFSIAEELIKPYLVEMCSEVLGSSAGEKMKTIPLSNSTI 715

HSP 2 Score: 40.0466 bits (92), Expect = 5.365e-9
Identity = 23/85 (27.06%), Postives = 46/85 (54.12%), Query Frame = -3 
Query:  117 RMADMGHDIKMQVVSEIRAALLKKIAIQLDESTYAASCTQRLVFIRYI--KDGDFKEEFLFFHVLKSTNKAKNVLTVVSSFFHNK 365
            R+  +  DI+ Q++ ++R +  +  A+Q+DES+ A      L ++R+I    GD KEE LF   + S +    V  +++ +  ++
Sbjct:  718 RIKKLSDDIEDQLLQKVRES--RWFALQVDESSEATEVPLLLCYVRFIDYDRGDVKEELLFCTEMPSPSTDLEVFELINKYIDSR 800
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2B vs. Ensembl Mouse
Match: Cd209e (CD209e antigen [Source:MGI Symbol;Acc:MGI:2157948])

HSP 1 Score: 49.2914 bits (116), Expect = 5.890e-6
Identity = 35/116 (30.17%), Postives = 59/116 (50.86%), Query Frame = 3 
Query: 2196 YVSNSQMTYCEAWLNCYKSGGRFML---ESEFSVIEKCGKLLNNTPYYIGLNDLVYERNNKRTGWIFSDSSTLVNT--SYWFWNQPNAMAGNEDCVFFRSNFLHDVRCDTLTGYIC 2528
            + S SQ  + ++   C + G + ++     E S +++  K   N+  ++GL+DL     NK   W + D S L ++   YW   QPN + G +DCV FR N  +D +C+    +IC
Sbjct:   90 FFSKSQRDWHDSMTACKEMGAQLVIIKSHEEQSFLQQTSK--KNSYTWMGLSDL-----NKEGEWYWLDGSPLSDSFEKYWKKGQPNNVGG-QDCVEFRDNGWNDAKCEQRKFWIC 197
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2B vs. UniProt/SwissProt
Match: sp|A4Z945|ZBED8_BOVIN (Protein ZBED8 OS=Bos taurus OX=9913 GN=ZBED8 PE=2 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.613e-17
Identity = 33/81 (40.74%), Postives = 51/81 (62.96%), Query Frame = -3 
Query:  126 ARMADMGHDIKMQVVSEIRAALLKKIAIQLDESTYAASCTQRLVFIRYIKDGDFKEEFLFFHVLKSTNKAKNVLTVVSSFF 368
            +R+ +M  DI  QV+ +I+A+ LK + IQL E+T    C+Q + F+RYI++ +  EEFLF   L+ T K K+V  +   FF
Sbjct:  148 SRIDEMSQDILQQVLEDIKASPLK-VGIQLAETTDMDDCSQLMAFVRYIREREIVEEFLFCEPLQLTMKGKDVFNLFRDFF 227

HSP 2 Score: 48.521 bits (114), Expect = 1.613e-17
Identity = 28/69 (40.58%), Postives = 40/69 (57.97%), Query Frame = -1 
Query:  371 LHNTGQLSQ*NQAVVRASYIVALRILQSKKPHAVAEKLIIPCFKDIVCCMIGEDAEKKLNYILLTYDTI 577
            L   G  SQ   A+++ASY  A    + K PH +AEKL+ PC  +I   ++G DA+KKL  + L+ D I
Sbjct:   79 LKTFGVASQ-EDALLQASYQFAYLCAKEKNPHTIAEKLVKPCALEIAQIVLGPDAQKKLQQVPLSDDVI 146
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2B vs. UniProt/SwissProt
Match: sp|Q6R2W3|SCND3_HUMAN (SCAN domain-containing protein 3 OS=Homo sapiens OX=9606 GN=ZBED9 PE=2 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 5.845e-17
Identity = 27/63 (42.86%), Postives = 41/63 (65.08%), Query Frame = -1 
Query:  371 LSQ*NQAVVRASYIVALRILQSKKPHAVAEKLIIPCFKDIVCCMIGEDAEKKLNYILLTYDTI 559
            +S  N + +RASY VAL + +SK P+ +AE L+  C K++   M+GE A KK+  + L+ DTI
Sbjct:  812 VSHINISALRASYKVALPVAKSKTPYTIAETLVKDCIKEVCLEMLGESAAKKVAQVPLSNDTI 874

HSP 2 Score: 44.669 bits (104), Expect = 5.845e-17
Identity = 25/83 (30.12%), Postives = 46/83 (55.42%), Query Frame = -3 
Query:  117 RMADMGHDIKMQVVSEIRAALLKKIAIQLDESTYAASCTQRLVFIRYIKDGDFKEEFLFFHVLKSTNKAKNVLTVVSSFFHNK 365
            R+ ++ +D++ Q++ +I+ A  K  ++QLDE    A+    LV++R+  D D KEEF F   L +   +  +   V ++  NK
Sbjct:  877 RIQELANDMEDQLIEQIKLA--KYFSLQLDECRDIANMIILLVYVRFEHDDDIKEEFFFSASLPTNTTSSELYEAVKNYIVNK 957

HSP 3 Score: 32.7278 bits (73), Expect = 5.845e-17
Identity = 24/70 (34.29%), Postives = 33/70 (47.14%), Query Frame = -3 
Query:  636 RVYDAIYIEYGFKSVVKNNGKIPQXXXXXXXXXXXXXXVYRSIQQ*HFFISILSKASMKPSFLKRHL*SR 845
            R YD  YIE+GF +V+      PQC++C                       +L+  +MKPS LKRHL S+
Sbjct:  735 RKYDPSYIEFGFVAVIDGEVLKPQCIICG---------------------DVLANEAMKPSKLKRHLYSK 783
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2B vs. UniProt/SwissProt
Match: sp|Q8TCP9|F200A_HUMAN (Protein FAM200A OS=Homo sapiens OX=9606 GN=FAM200A PE=1 SV=1)

HSP 1 Score: 42.743 bits (99), Expect = 5.424e-9
Identity = 21/60 (35.00%), Postives = 36/60 (60.00%), Query Frame = -3 
Query:  192 SARMADMGHDIKMQVVSEIRAALLKKIAIQLDESTYAASCTQRLVFIRYIKDGDFKEEFL 371
            S R+  +   ++  +++ +++ +    AIQLDEST  ASC   LV++RY+   DF E+ L
Sbjct:  116 SRRICTIAKHLEAMLITRLQSGI--DFAIQLDESTDIASCPTLLVYVRYVWQDDFVEDLL 173

HSP 2 Score: 41.2022 bits (95), Expect = 5.424e-9
Identity = 21/59 (35.59%), Postives = 35/59 (59.32%), Query Frame = -1 
Query:  371 NQAVVRASYIVALRILQSKKPHAVAEKLIIPCFKDIVCCMIGEDAEKKLNYILLTYDTI 547
            N+  + +SY+VA R+ + K  H  AEK+I+P   D+V  +  + +  KL  I L+ +TI
Sbjct:   57 NERALLSSYLVAYRVAKEKMAHTAAEKIILPACMDMVRTIFDDKSADKLRTIPLSDNTI 115
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2B vs. UniProt/SwissProt
Match: sp|Q4R6P1|F200A_MACFA (Protein FAM200A OS=Macaca fascicularis OX=9541 GN=FAM200A PE=2 SV=1)

HSP 1 Score: 42.743 bits (99), Expect = 5.979e-9
Identity = 21/60 (35.00%), Postives = 36/60 (60.00%), Query Frame = -3 
Query:  192 SARMADMGHDIKMQVVSEIRAALLKKIAIQLDESTYAASCTQRLVFIRYIKDGDFKEEFL 371
            S R+  +   ++  +++ +++ +    AIQLDEST  ASC   LV++RY+   DF E+ L
Sbjct:  116 SRRICTIAKHLEAMLITRLQSGI--DFAIQLDESTDIASCPTLLVYVRYVWQDDFVEDLL 173

HSP 2 Score: 41.2022 bits (95), Expect = 5.979e-9
Identity = 21/59 (35.59%), Postives = 35/59 (59.32%), Query Frame = -1 
Query:  371 NQAVVRASYIVALRILQSKKPHAVAEKLIIPCFKDIVCCMIGEDAEKKLNYILLTYDTI 547
            N+  + +SY+VA R+ + K  H  AEK+I+P   D+V  +  + +  KL  I L+ +TI
Sbjct:   57 NERALLSSYLVAYRVAKEKMAHTAAEKIILPACMDMVRTIFDDKSADKLRTIPLSDNTI 115
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2B vs. UniProt/SwissProt
Match: sp|A4Z944|ZBED5_CANLF (Zinc finger BED domain-containing protein 5 OS=Canis lupus familiaris OX=9615 GN=ZBED5 PE=4 SV=1)

HSP 1 Score: 44.669 bits (104), Expect = 7.226e-9
Identity = 22/59 (37.29%), Postives = 33/59 (55.93%), Query Frame = -1 
Query:  371 NQAVVRASYIVALRILQSKKPHAVAEKLIIPCFKDIVCCMIGEDAEKKLNYILLTYDTI 547
            N++   ASY V+  I  S + H + E LI PC KD+V  M  E   KK++ + L+  T+
Sbjct:  191 NESATEASYNVSYHIALSGEAHTIGELLIKPCAKDVVMRMFDEQYSKKIDAVQLSNSTV 249

HSP 2 Score: 38.891 bits (89), Expect = 7.226e-9
Identity = 22/81 (27.16%), Postives = 40/81 (49.38%), Query Frame = -3 
Query:  123 RMADMGHDIKMQVVSEIRAALLKKIAIQLDESTYAASCTQRLVFIRYIKDGDFKEEFLFFHVLKSTNKAKNVLTVVSSFFH 365
            R+ D+  DI+ ++V   R  +    ++QLDES   +     LVF+RY  +   +E+ L    L+S    + +   ++SF  
Sbjct:  252 RIKDLAADIEEELV--CRLKICDGFSLQLDESADVSGLAVLLVFVRYRFNKSIEEDLLLCESLQSNATGEEIFNCINSFMQ 330
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2B vs. TrEMBL
Match: D3ZTR5 (RCG21454 OS=Rattus norvegicus OX=10116 GN=Zbed5 PE=4 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.575e-29
Identity = 43/80 (53.75%), Postives = 55/80 (68.75%), Query Frame = -3 
Query:  126 RMADMGHDIKMQVVSEIRAALLKKIAIQLDESTYAASCTQRLVFIRYIKDGDFKEEFLFFHVLKSTNKAKNVLTVVSSFF 365
            R+ DM  DI  QV+ EI++A L   +IQLDEST  A+C+Q LV++RYIKDGDFK+EFLF   L+ T  A +V   V SF 
Sbjct:  311 RIHDMSADILDQVIQEIKSAQLPAFSIQLDESTDVANCSQLLVYVRYIKDGDFKDEFLFCKPLERTTTALDVFEAVGSFL 390

HSP 2 Score: 60.4622 bits (145), Expect = 5.575e-29
Identity = 35/86 (40.70%), Postives = 51/86 (59.30%), Query Frame = -1 
Query:  371 KDASFFKPMEVRIK*ILHNTGQLS-Q*NQAVVRASYIVALRILQSKKPHAVAEKLIIPCFKDIVCCMIGEDAEKKLNYILLTYDTI 625
            KD ++F+     +K    +TG  + + N A V ASY+VALRI +  KPH  AE L+ P  KD V  MIG++   KL+ + L+ DT+
Sbjct:  223 KDTNYFRSKADGLKKARFDTGSKTYKQNVAAVEASYLVALRIARDMKPHTFAEHLLFPVAKDSVRVMIGDEFVTKLSAVSLSNDTV 308

HSP 3 Score: 31.5722 bits (70), Expect = 5.575e-29
Identity = 23/74 (31.08%), Postives = 35/74 (47.30%), Query Frame = -3 
Query:  630 KKRVYDAIYIEYGFKSVVKNNGKIPQXXXXXXXXXXXXXXVYRSIQQ*HFFISILSKASMKPSFLKRHL*SRRN 851
            K+R Y+  +++YGF S +    + PQCV+C                       +LS  SMKP+ LKRH  S+ +
Sbjct:  166 KRRKYNEGFLQYGFTSAITAGTERPQCVICGV---------------------VLSAESMKPNKLKRHFESKHS 218
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2B vs. TrEMBL
Match: J3S533 (SCAN domain-containing protein 3 OS=Crotalus adamanteus OX=8729 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.866e-29
Identity = 44/84 (52.38%), Postives = 58/84 (69.05%), Query Frame = -3 
Query:  120 RMADMGHDIKMQVVSEIRAALLKKIAIQLDESTYAASCTQRLVFIRYIKDGDFKEEFLFFHVLKSTNKAKNVLTVVSSFF--HN 365
            R+ DM  DI  QV+ EI++A L   +IQLDEST  A+C+Q LV++RYI DGDFK+EFLF   L++T  A++V   V SF   HN
Sbjct:  153 RIDDMSADILDQVIQEIKSAPLPIFSIQLDESTDVANCSQLLVYVRYINDGDFKDEFLFCKPLETTTTARDVFDKVGSFLKEHN 236

HSP 2 Score: 62.7734 bits (151), Expect = 9.866e-29
Identity = 40/95 (42.11%), Postives = 55/95 (57.89%), Query Frame = -1 
Query:  371 DICNPEETEKDASFFKPMEVRIK*I-LHNTGQLSQ*NQAVVRASYIVALRILQSKKPHAVAEKLIIPCFKDIVCCMIGEDAEKKLNYILLTYDTI 652
            D  +P    KD ++FK     +K   L   G+  + N A V ASY+VALRI ++ KPH +AE L++   KDIV  MIG +   KLN I L+ DT+
Sbjct:   57 DAKHPSFAGKDTNYFKSKADGLKKARLDTGGKYHKHNVAAVEASYLVALRIARAMKPHTIAEDLLLAA-KDIVRVMIGNEFVPKLNAISLSNDTV 150

HSP 3 Score: 28.4906 bits (62), Expect = 9.866e-29
Identity = 23/68 (33.82%), Postives = 32/68 (47.06%), Query Frame = -3 
Query:  648 KKRVYDAIYIEYGFKSVVKNNGKIPQXXXXXXXXXXXXXXVYRSIQQ*HFFISILSKASMKPSFLKRH 851
            KKR Y   +++YGF S +    + PQCV+C+                      +LS  SMKP+ LKRH
Sbjct:    9 KKRKYREDFLQYGFTSKITAGIEKPQCVICR---------------------EVLSAESMKPNKLKRH 55
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2B vs. TrEMBL
Match: G1KUE3 (Uncharacterized protein OS=Anolis carolinensis OX=28377 PE=4 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.951e-28
Identity = 40/80 (50.00%), Postives = 55/80 (68.75%), Query Frame = -3 
Query:  126 RMADMGHDIKMQVVSEIRAALLKKIAIQLDESTYAASCTQRLVFIRYIKDGDFKEEFLFFHVLKSTNKAKNVLTVVSSFF 365
            R+ D+  DI  QV+ EI++A L   +IQLDEST  A+C+Q LV++RYI D DFK+EFLF+  L++T  A +V   V SF 
Sbjct:  146 RINDLSADILGQVIQEIKSAPLPIFSIQLDESTDVANCSQLLVYVRYINDDDFKDEFLFYKPLETTTTAHDVFDTVGSFL 225

HSP 2 Score: 62.003 bits (149), Expect = 3.951e-28
Identity = 35/86 (40.70%), Postives = 52/86 (60.47%), Query Frame = -1 
Query:  371 KDASFFKPMEVRIK*I-LHNTGQLSQ*NQAVVRASYIVALRILQSKKPHAVAEKLIIPCFKDIVCCMIGEDAEKKLNYILLTYDTI 625
            KD ++F+     +K   L   G+  + N   V ASY+VALRI ++ KPH  AE L++P  KDIV  MIG++   KL+ + L+ DT+
Sbjct:   58 KDPNYFRSKADGLKKARLDTGGEYHKQNVTAVEASYLVALRIARAMKPHTTAEDLLLPAAKDIVQVMIGDEFVTKLSALPLSNDTV 143

HSP 3 Score: 30.0314 bits (66), Expect = 3.951e-28
Identity = 23/68 (33.82%), Postives = 32/68 (47.06%), Query Frame = -3 
Query:  648 KKRVYDAIYIEYGFKSVVKNNGKIPQXXXXXXXXXXXXXXVYRSIQQ*HFFISILSKASMKPSFLKRH 851
            KKR Y   Y++YGF S++    + PQCV+C                       +L+  SMKP+ LKRH
Sbjct:    1 KKRKYREDYLQYGFTSIIIAGIEKPQCVICG---------------------EVLAAESMKPNKLKRH 47
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2B vs. TrEMBL
Match: A0A087TE99 (Zinc finger MYM-type protein 6 (Fragment) OS=Stegodyphus mimosarum OX=407821 GN=X975_21928 PE=4 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.876e-27
Identity = 67/98 (68.37%), Postives = 79/98 (80.61%), Query Frame = 3 
Query: 1359 ALNESTDKTYLPKLLYFIRAVTKDFQCYEELLALGILTGRTLIVDIFENFRKV*H*IQSNVSNLVIVCTMGHLS----RELFIAILKRENLNLKKLIS 1640
            AL+ESTDKT   ++LYFIRA+TKDFQCYEELLALG LTGRT   DIFENF++V + +Q NVSNLV VCT G  S    +E F+A+LK+ENLNLKKLIS
Sbjct:  148 ALDESTDKTDSAQVLYFIRAITKDFQCYEELLALGTLTGRTRGADIFENFKEVCNKLQLNVSNLVSVCTDGAPSMRGKKEGFVALLKKENLNLKKLIS 245
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2B vs. TrEMBL
Match: A0A1W3JIG6 (LOW QUALITY PROTEIN: SCAN domain-containing protein 3-like OS=Ciona intestinalis OX=7719 GN=LOC101242717 PE=4 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 2.975e-27
Identity = 40/84 (47.62%), Postives = 56/84 (66.67%), Query Frame = -3 
Query:  120 SARMADMGHDIKMQVVSEIRAALLKKIAIQLDESTYAASCTQRLVFIRYIKDGDFKEEFLFFHVLKSTNKAKNVLTVVSSFFHN 371
            S R+ DM  DI  QV+ E+++A L   +IQLDEST  A+C+Q LV++RYI +GDFK+EF     L++T  A++V   V SF  N
Sbjct:  153 SRRLDDMSADIMEQVIQEMKSAPLGIFSIQLDESTDVANCSQLLVYVRYIYEGDFKDEFFXCKPLETTTTARDVSDTVGSFLQN 236

HSP 2 Score: 70.8626 bits (172), Expect = 2.975e-27
Identity = 41/95 (43.16%), Postives = 58/95 (61.05%), Query Frame = -1 
Query:  371 DICNPEETEKDASFFKPMEVRIK*I-LHNTGQLSQ*NQAVVRASYIVALRILQSKKPHAVAEKLIIPCFKDIVCCMIGEDAEKKLNYILLTYDTI 652
            D  +P    KD  +FK     +K I L + G+  Q N A + ASY+VALRI ++KKPH +AE+L++P  KDIV  M+G +   KLN I L  +T+
Sbjct:   58 DAKHPNFAGKDVQYFKNKADCVKKIRLDSGGKYQQQNVAAIEASYLVALRIAKAKKPHTIAEELLLPATKDIVRVMLGAEYVNKLNTISLFNNTV 152
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2B vs. Ensembl Cavefish
Match: ENSAMXT00000051422.1 (pep primary_assembly:Astyanax_mexicanus-2.0:15:35461191:35465166:-1 gene:ENSAMXG00000032672.1 transcript:ENSAMXT00000051422.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 51.9878 bits (123), Expect = 1.354e-14
Identity = 26/59 (44.07%), Postives = 37/59 (62.71%), Query Frame = -1 
Query:  371 NQAVVRASYIVALRILQSKKPHAVAEKLIIPCFKDIVCCMIGEDAEKKLNYILLTYDTI 547
            N   V ASY VA  I ++ KPH + E LI+P  K++V  M+GE   K+LN I L+ +T+
Sbjct:  166 NAKAVEASYRVAQLIAKAGKPHTIGESLILPAAKEMVSVMLGEKPCKQLNLISLSDNTV 224

HSP 2 Score: 48.1358 bits (113), Expect = 1.354e-14
Identity = 26/79 (32.91%), Postives = 45/79 (56.96%), Query Frame = -3 
Query:  129 RMADMGHDIKMQVVSEIRAALLKKIAIQLDESTYAASCTQRLVFIRYIKDGDFKEEFLFFHVLKSTNKAKNVLTVVSSF 365
            R+ +M HD+  Q++  +R +  +  AIQLDEST  A+ +  L F+RY  + +  E+ LF   L +   A  +  V+++F
Sbjct:  227 RINEMAHDVTQQLIKRVRES--RFYAIQLDESTDIANLSNLLAFVRYEHNREIFEDILFCKPLPTKTTAVAIFDVLNAF 303
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2B vs. Ensembl Cavefish
Match: ENSAMXT00000044261.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000070.1:2279767:2281653:1 gene:ENSAMXG00000037161.1 transcript:ENSAMXT00000044261.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 50.8322 bits (120), Expect = 4.543e-14
Identity = 25/56 (44.64%), Postives = 36/56 (64.29%), Query Frame = -1 
Query:  371 VVRASYIVALRILQSKKPHAVAEKLIIPCFKDIVCCMIGEDAEKKLNYILLTYDTI 538
             V ASY VA  I ++ KPH + E LI+P  K++V  M+GE   K+LN I L+ +T+
Sbjct:  126 AVEASYRVAQLIAKAGKPHTIGESLILPAAKEMVSVMLGEKPCKQLNLISLSDNTV 181

HSP 2 Score: 47.7506 bits (112), Expect = 4.543e-14
Identity = 25/79 (31.65%), Postives = 45/79 (56.96%), Query Frame = -3 
Query:  129 RMADMGHDIKMQVVSEIRAALLKKIAIQLDESTYAASCTQRLVFIRYIKDGDFKEEFLFFHVLKSTNKAKNVLTVVSSF 365
            R+ +M HD+  Q++  +R +  +  AIQLDEST  A+ +  L F+RY  + +  E+ LF   L +   A+ +  V+++ 
Sbjct:  184 RINEMAHDVTQQLIKRVRES--RFYAIQLDESTDIANLSNLLAFVRYEHNREIFEDILFCKPLPTKTTAEAIFDVLNAL 260
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2B vs. Ensembl Sea Lamprey
Match: ENSPMAT00000005222.1 (pep scaffold:Pmarinus_7.0:GL492592:1201:2726:-1 gene:ENSPMAG00000004753.1 transcript:ENSPMAT00000005222.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 46.9802 bits (110), Expect = 1.804e-6
Identity = 32/106 (30.19%), Postives = 52/106 (49.06%), Query Frame = 3 
Query: 2220 YCEAWLNCYKSGGRFMLESEFSVIEKCG--KLLNNTPYYIGLNDLVYERNNKRTGWIFSDSSTLVNTSYWFWNQPNAMAGNEDCV-FFRSNFLHDVRCDTLTGYIC 2528
            Y  A   C   GG  +L    + I+  G  +++     +IGLND+ +E N     ++FSD S L     +   +PN+  G+EDCV  + +   +D+ C T   +IC
Sbjct:   36 YHSARQQCANHGG--VLAMPKNAIQNAGIQQVVRGDRAFIGLNDIQHENN-----FVFSDGSRLGLYRNFALGEPNSFGGDEDCVNIYPNGKWNDIGCHTQLHFIC 134
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2B vs. Ensembl Medaka
Match: ENSORLT00000032459.1 (pep primary_assembly:ASM223467v1:8:14240678:14247355:1 gene:ENSORLG00000024991.1 transcript:ENSORLT00000032459.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 50.8322 bits (120), Expect = 1.048e-15
Identity = 26/56 (46.43%), Postives = 37/56 (66.07%), Query Frame = -1 
Query:  371 VVRASYIVALRILQSKKPHAVAEKLIIPCFKDIVCCMIGEDAEKKLNYILLTYDTI 538
             ++ASY+VA R+ QSKK   +AE+L++P   D+   MIGE A KKL  I L+ D +
Sbjct:   97 ALKASYLVARRVAQSKKAFTIAEELVLPAAVDMCREMIGEAAAKKLKTIPLSNDIV 152

HSP 2 Score: 48.521 bits (114), Expect = 1.048e-15
Identity = 27/82 (32.93%), Postives = 44/82 (53.66%), Query Frame = -3 
Query:  126 SARMADMGHDIKMQVVSEIRAALLKKIAIQLDESTYAASCTQRLVFIRYIKDGDFKEEFLFFHVLKSTNKAKNVLTVVSSFF 371
            S R+AD+  DI+ Q++  IR +     ++QLDEST   +    LVF+RY  D   +E+ LF   L +   A+     + ++F
Sbjct:  153 SHRIADIASDIEQQLLERIRKSPF--FSLQLDESTDVTNAALLLVFVRYRWDSSLQEDILFCGELPTRATAEECFRCMDNYF 232

HSP 3 Score: 24.2534 bits (51), Expect = 1.048e-15
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = -3 
Query:  645 LSKASMKPSFLKRHL 689
            LS  ++KPS LKRHL
Sbjct:   44 LSNEALKPSKLKRHL 58
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2B vs. Ensembl Medaka
Match: ENSORLT00000040762.1 (pep primary_assembly:ASM223467v1:1:8553592:8557739:1 gene:ENSORLG00000022190.1 transcript:ENSORLT00000040762.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 46.595 bits (109), Expect = 2.905e-11
Identity = 28/80 (35.00%), Postives = 41/80 (51.25%), Query Frame = -3 
Query:  126 RMADMGHDIKMQVVSEIRAALLKKIAIQLDESTYAASCTQRLVFIRYIKDGDFKEEFLFFHVLKSTNKAKNVLTVVSSFF 365
            R+  MG DI  QVV +    L    ++QLDEST  +   Q + F+RYI   D  E  LF   ++     +++  VV+ FF
Sbjct:  211 RIDTMGPDIIEQVVGK----LGDSFSLQLDESTDVSGHAQLVAFVRYIDTDDICEHILFCKEMEGRTTGEDIFNVVNMFF 286

HSP 2 Score: 34.6538 bits (78), Expect = 2.905e-11
Identity = 22/90 (24.44%), Postives = 44/90 (48.89%), Query Frame = -1 
Query:  371 PEETEKDASFFKPMEVRIK*ILHNTGQLSQ*NQAVVRASYIVALRILQSKKPHAVAEKLIIPCFKDIVCCMIGEDAEKKLNYILLTYDTI 640
            PE   +  S FK  +  ++       ++S  +   + ASY V+L + ++KKP  +AE L++P    +   M+ + +      + L+ DT+
Sbjct:  126 PEFFRRKLSEFKSSQATMR-------KVSTTSAKALEASYAVSLLVAKAKKPFTIAEDLLLPAVVVLAETMLDKKSADTFKTVPLSNDTV 208

HSP 3 Score: 26.9498 bits (58), Expect = 2.905e-11
Identity = 22/71 (30.99%), Postives = 29/71 (40.85%), Query Frame = -3 
Query:  645 TKKRVYDAIYIEYGFKSVVKNNGKIPQXXXXXXXXXXXXXXVYRSIQQ*HFFIS-ILSKASMKPSFLKRHL 854
            TK R Y+  Y+  GF S   +    PQ +                     FF    L+ ASMKP+ L+RHL
Sbjct:   67 TKSRKYNEDYVLMGFTSASSDP---PQALC--------------------FFCGEKLANASMKPAHLQRHL 114
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2B vs. Ensembl Medaka
Match: ENSORLT00000035028.1 (pep primary_assembly:ASM223467v1:2:7372701:7381259:1 gene:ENSORLG00000027324.1 transcript:ENSORLT00000035028.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 42.743 bits (99), Expect = 3.267e-11
Identity = 23/79 (29.11%), Postives = 40/79 (50.63%), Query Frame = -3 
Query:  129 RMADMGHDIKMQVVSEIRAALLKKIAIQLDESTYAASCTQRLVFIRYIKDGDFKEEFLFFHVLKSTNKAKNVLTVVSSF 365
            R+  M   ++ Q+V+ +R +     ++QLDEST   +    L F+RYI  G   +EFLF   L +    + +   ++ F
Sbjct:  123 RIKAMAESVEHQLVTHLRQSQF--FSLQLDESTDLGNEANLLCFVRYIYAGGLHDEFLFCRSLPTNTTGEAIFHSLNDF 199

HSP 2 Score: 41.5874 bits (96), Expect = 3.267e-11
Identity = 21/59 (35.59%), Postives = 32/59 (54.24%), Query Frame = -1 
Query:  371 NQAVVRASYIVALRILQSKKPHAVAEKLIIPCFKDIVCCMIGEDAEKKLNYILLTYDTI 547
            N     ASY V+L I ++ KPH++ E L+ P  K +     G  A  ++N I L+ DT+
Sbjct:   62 NVKATEASYKVSLLIAKAGKPHSIGENLVKPAAKVMANIFFGGKAGDEINRIPLSNDTV 120

HSP 3 Score: 23.483 bits (49), Expect = 3.267e-11
Identity = 9/15 (60.00%), Postives = 12/15 (80.00%), Query Frame = -3 
Query:  645 LSKASMKPSFLKRHL 689
            L+  +MKP+ LKRHL
Sbjct:    9 LTNEAMKPAKLKRHL 23
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2B vs. Ensembl Medaka
Match: ENSORLT00000032191.1 (pep primary_assembly:ASM223467v1:7:34400406:34401509:1 gene:ENSORLG00000024356.1 transcript:ENSORLT00000032191.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 65.855 bits (159), Expect = 7.431e-11
Identity = 36/81 (44.44%), Postives = 54/81 (66.67%), Query Frame = -3 
Query:  129 SARMADMGHDIKMQVVSEIRAALLKKIAIQLDESTYAASCTQRLVFIRYIKDGDFKEEFLFFHVLKSTNKAKNVLTVVSSF 371
            S R+ DM +DI  QVV+++ ++   K ++QLDE+T  A+ +Q  VF+RY+KD   KEEFLF   L +T+KA +V  +V  F
Sbjct:  151 SDRIGDMSNDILAQVVADLISSP-AKFSLQLDETTDVANLSQLAVFVRYVKDDMIKEEFLFCKPLTTTSKAADVKKLVDDF 230
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2B vs. Ensembl Medaka
Match: ENSORLT00000030788.1 (pep primary_assembly:ASM223467v1:17:2264135:2274164:1 gene:ENSORLG00000023031.1 transcript:ENSORLT00000030788.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 40.0466 bits (92), Expect = 5.917e-10
Identity = 19/55 (34.55%), Postives = 30/55 (54.55%), Query Frame = -3 
Query:  126 AIQLDESTYAASCTQRLVFIRYIKDGDFKEEFLFFHVLKSTNKAKNVLTVVSSFF 290
            ++QLDEST  +   Q + F+RYI   D  E  LF   ++     +++  VV+ FF
Sbjct:  159 SLQLDESTDVSGHAQLVAFVRYIDTDDICEHILFCKEMEGRTTGEDIFNVVNMFF 213

HSP 2 Score: 36.1946 bits (82), Expect = 5.917e-10
Identity = 17/56 (30.36%), Postives = 33/56 (58.93%), Query Frame = -1 
Query:  371 VVRASYIVALRILQSKKPHAVAEKLIIPCFKDIVCCMIGEDAEKKLNYILLTYDTI 538
            V+ ASY V+L + ++KKP  +AE L++P    +   M+ +++      + L+ DT+
Sbjct:   87 VLEASYAVSLLVAKAKKPFTIAEDLLLPAAVVLAETMLDKESADTFKTVPLSNDTV 142

HSP 3 Score: 27.335 bits (59), Expect = 5.917e-10
Identity = 12/24 (50.00%), Postives = 16/24 (66.67%), Query Frame = -3 
Query:  618 LSKASMKPSFLKRHL*SRRNRKGC 689
            L+ ASMKP+ L+RHL     + GC
Sbjct:   34 LANASMKPAHLQRHL---TTKHGC 54
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2B vs. Planmine SMEST
Match: SMESG000010083.1 (SMESG000010083.1)

HSP 1 Score: 328.176 bits (840), Expect = 5.398e-107
Identity = 156/158 (98.73%), Postives = 157/158 (99.37%), Query Frame = 3 
Query: 2190 MVYVSNSQMTYCEAWLNCYKSGGRFMLESEFSVIEKCGKLLNNTPYYIGLNDLVYERNNKRTGWIFSDSSTLVNTSYWFWNQPNAMAGNEDCVFFRSNFLHDVRCDTLTGYICVQTTYRNFQPRLYSIDSRRPIINNDDQEGCYDSFKPTNELECALI 2663
            MVYVSNSQMTYCEAWLNCYKSGGRFMLESEFSVIEKCGKLLNNTPYYIGLNDLVYERNNKRTGWIFSDSSTLVNTSYWFWNQPNAMAGNEDCVFFRSNFLHDVRCDTLTGYICVQTTYRNFQPRLYSIDSRRPIINNDDQEGCYDSFK TNELECAL+
Sbjct:    1 MVYVSNSQMTYCEAWLNCYKSGGRFMLESEFSVIEKCGKLLNNTPYYIGLNDLVYERNNKRTGWIFSDSSTLVNTSYWFWNQPNAMAGNEDCVFFRSNFLHDVRCDTLTGYICVQTTYRNFQPRLYSIDSRRPIINNDDQEGCYDSFKLTNELECALM 158
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2B vs. Planmine SMEST
Match: SMESG000058775.1 (SMESG000058775.1)

HSP 1 Score: 202.216 bits (513), Expect = 4.696e-59
Identity = 96/205 (46.83%), Postives = 129/205 (62.93%), Query Frame = 3 
Query: 2169 YQQCEKLMVYVSNSQMTYCEAWLNCYKSGGRFMLESEFSVIEKCGKLLNNTPYYIGLNDLVYERNNKRTGWIFSDSSTLVNTSYWFWNQPNAMAGNEDCVFFRSNFLHDVRCDTLTGYICVQTTYRNFQPRLYSIDSRRPIINNDDQEGCYDSFKPTNELECALISITQPYYKSFYFDTVQNECVLTKYVDSSLSKKYNQFDRNW 2783
            Y+ C++L VY+S +Q TYC AW  C+  GGR   ES+ S +  C  +L N  +YIGLNDL++ER   +TGW+FSD S L +TSYW+  +PN+M   EDCV   + F +D  C     Y C+  +Y     R    +S RPI NND + GCYD     + LEC  IS+T+PYY+SFYFD +Q++CVL KYVDS+L   +N  DR W
Sbjct:   20 YKPCQQLQVYISTTQETYCNAWSKCFDIGGRLASESDISTVMDC-NMLPNVHFYIGLNDLLFERYKNQTGWLFSDGSQLNDTSYWYNQEPNSMPSGEDCVVINTKF-YDTSCKGNFNYFCIANSYDEIHARFLKSNSIRPIFNNDVEVGCYDIVSARSVLECGAISLTKPYYRSFYFDKIQSDCVLVKYVDSTLPLSFNTSDRQW 222
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2B vs. Planmine SMEST
Match: SMESG000058753.1 (SMESG000058753.1)

HSP 1 Score: 191.815 bits (486), Expect = 1.537e-55
Identity = 91/208 (43.75%), Postives = 133/208 (63.94%), Query Frame = 3 
Query: 2220 YCEAWLNCYKSGGRFMLESEFSVIEKCGKLLNNTPYYIGLNDLVYERNNKRTGWIFSDSSTLVNTSYWFWNQPNAMAGNEDCVFFRSNFLHDVRCDTLTGYICVQTTYRNFQPRLYSIDSRRPIINNDDQEGCYDSFKPTNELECALI-----------------SITQPYYKSFYFDTVQNECVLTKYVDSSLSKKYNQFDRNWKIY 2792
            YC+AW  CY SGGR +LE++  +I+ CG + +   Y+IGLNDLV ER   ++GWIFSD S L+NT YW  +QPN++   EDCV  ++N + D+ C+    Y+CV++    F+ R +  ++ RPI NND Q GCYD++K    L+CA++                 S++   YKSFYFD+   +CV +KYVDS+LS ++NQFDR W+I+
Sbjct:    4 YCDAWNTCYNSGGRLILENDIPIIKSCGVISSYNNYWIGLNDLVNERFTNKSGWIFSDGSELMNTGYWDSSQPNSLRAGEDCVVIQNNAIFDIECEETYKYVCVKSEEFKFRFRNFVSNASRPIYNNDIQSGCYDAYKAETTLQCAMLYELVTYYIFFIAILFHRSLSHSNYKSFYFDSESKDCVWSKYVDSTLSAQFNQFDRKWRIF 211
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2B vs. Planmine SMEST
Match: SMESG000058770.1 (SMESG000058770.1)

HSP 1 Score: 190.274 bits (482), Expect = 1.173e-54
Identity = 96/220 (43.64%), Postives = 130/220 (59.09%), Query Frame = 3 
Query: 2169 YQQCEKLMVYVSNSQMTYCEAWLNCYKSGGRFMLESEFSVIEKCGKLLNNTPYYIGLNDLVYERNNKRTGWIFSDSSTLVNTSYWFWNQPNAMAGNEDCVFFRSNFLHDVRCDTLTGYICVQTTYRNFQPRLYSIDSRRPIINNDDQEGCYDSFKPTNELECAL---------------ISITQPYYKSFYFDTVQNECVLTKYVDSSLSKKYNQFDRNW 2783
            Y+ C++L VY+S +Q TYC AW  C+  GGR   ES+ S +  C  +L N  +YIGLNDL++ER   +TGW+FSD S L NTSYW  N+PN++   EDCV  ++  L+D  C     Y C+  +Y     R+   +S RPI NND + GCYD     + LEC                  S+T+PYY+SFYFD +Q++CVL KYVDS+L   +N  DR W
Sbjct:   20 YKPCQQLQVYISTTQETYCNAWSKCFDIGGRLASESDISTVMDC-NMLPNVHFYIGLNDLLFERYKNQTGWLFSDGSQLNNTSYWNGNEPNSLYSGEDCVVIKTK-LYDTSCKGNFNYFCIANSYDEIHTRILKSNSTRPIFNNDVEVGCYDIVSAKSVLECGARYDCCIGIFLCFVTCRSLTKPYYRSFYFDKIQSDCVLVKYVDSTLPLSFNTSDRQW 237
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2B vs. Planmine SMEST
Match: SMESG000058758.1 (SMESG000058758.1)

HSP 1 Score: 193.741 bits (491), Expect = 1.034e-50
Identity = 97/203 (47.78%), Postives = 125/203 (61.58%), Query Frame = 3 
Query: 2184 KLMVYVSNSQMTYCEAWLNCYKSGGRFMLESEFSVIEKCGKLLNNTPYYIGLNDLVYERNNKRTGWIFSDSSTLVNTSYWFWNQPNAMAGNEDCVFFRSNFLHDVRCDTLTGYICVQTTYRNFQPRLYSIDSRRPIINNDDQEGCYDSFKPTNELECALISITQPYYKSFYFDTVQNECVLTKYVDSSLSKKYNQFDRNWKIY 2792
            KL VY+S +Q TYC AW  C+  GGR   ES+ S +  C  +L N  +YIGLNDL++ER   +TGW+FSD S L NTSYW   +PN+M   EDCV   +  L+D  C     Y C+  +Y     R    +S RPI NND + GCYD     + LEC  IS+T+PYY+SFYFD +Q++CVL KYVDS+L   +N  DR W  Y
Sbjct:  697 KLQVYISTTQETYCNAWSKCFDIGGRLASESDISTVMDCN-ILPNVHFYIGLNDLLFERYKNQTGWLFSDGSQLNNTSYWNTQEPNSMDCVEDCVVINTK-LYDTSCKGNFNYFCIANSYDEIHARNLKRNSTRPIFNNDVEVGCYDIVSARSVLECGAISLTKPYYRSFYFDKIQSDCVLVKYVDSTLPLSFNTSDRQWIGY 897
The following BLAST results are available for this feature:
BLAST of General transcription factor II-I repeat domain-containing protein 2B vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ZBED91.316e-1742.86zinc finger BED-type containing 9 [Source:HGNC Sym... [more]
ZBED91.354e-1742.19zinc finger BED-type containing 9 [Source:HGNC Sym... [more]
FAM200A1.221e-935.00family with sequence similarity 200 member A [Sour... [more]
FAM200A1.316e-935.00family with sequence similarity 200 member A [Sour... [more]
ZBED51.722e-937.29zinc finger BED-type containing 5 [Source:HGNC Sym... [more]
back to top
BLAST of General transcription factor II-I repeat domain-containing protein 2B vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of General transcription factor II-I repeat domain-containing protein 2B vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of General transcription factor II-I repeat domain-containing protein 2B vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of General transcription factor II-I repeat domain-containing protein 2B vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of General transcription factor II-I repeat domain-containing protein 2B vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 4
Match NameE-valueIdentityDescription
Zbed52.529e-1531.91zinc finger, BED type containing 5 [Source:MGI Sym... [more]
Zmym65.352e-934.48zinc finger, MYM-type 6 [Source:MGI Symbol;Acc:MGI... [more]
Zmym65.365e-934.48zinc finger, MYM-type 6 [Source:MGI Symbol;Acc:MGI... [more]
Cd209e5.890e-630.17CD209e antigen [Source:MGI Symbol;Acc:MGI:2157948][more]
back to top
BLAST of General transcription factor II-I repeat domain-containing protein 2B vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|A4Z945|ZBED8_BOVIN1.613e-1740.74Protein ZBED8 OS=Bos taurus OX=9913 GN=ZBED8 PE=2 ... [more]
sp|Q6R2W3|SCND3_HUMAN5.845e-1742.86SCAN domain-containing protein 3 OS=Homo sapiens O... [more]
sp|Q8TCP9|F200A_HUMAN5.424e-935.00Protein FAM200A OS=Homo sapiens OX=9606 GN=FAM200A... [more]
sp|Q4R6P1|F200A_MACFA5.979e-935.00Protein FAM200A OS=Macaca fascicularis OX=9541 GN=... [more]
sp|A4Z944|ZBED5_CANLF7.226e-937.29Zinc finger BED domain-containing protein 5 OS=Can... [more]
back to top
BLAST of General transcription factor II-I repeat domain-containing protein 2B vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
D3ZTR55.575e-2953.75RCG21454 OS=Rattus norvegicus OX=10116 GN=Zbed5 PE... [more]
J3S5339.866e-2952.38SCAN domain-containing protein 3 OS=Crotalus adama... [more]
G1KUE33.951e-2850.00Uncharacterized protein OS=Anolis carolinensis OX=... [more]
A0A087TE992.876e-2768.37Zinc finger MYM-type protein 6 (Fragment) OS=Stego... [more]
A0A1W3JIG62.975e-2747.62LOW QUALITY PROTEIN: SCAN domain-containing protei... [more]
back to top
BLAST of General transcription factor II-I repeat domain-containing protein 2B vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
ENSAMXT00000051422.11.354e-1444.07pep primary_assembly:Astyanax_mexicanus-2.0:15:354... [more]
ENSAMXT00000044261.14.543e-1444.64pep primary_assembly:Astyanax_mexicanus-2.0:APWO02... [more]
back to top
BLAST of General transcription factor II-I repeat domain-containing protein 2B vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
ENSPMAT00000005222.11.804e-630.19pep scaffold:Pmarinus_7.0:GL492592:1201:2726:-1 ge... [more]
back to top
BLAST of General transcription factor II-I repeat domain-containing protein 2B vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of General transcription factor II-I repeat domain-containing protein 2B vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of General transcription factor II-I repeat domain-containing protein 2B vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ENSORLT00000032459.11.048e-1546.43pep primary_assembly:ASM223467v1:8:14240678:142473... [more]
ENSORLT00000040762.12.905e-1135.00pep primary_assembly:ASM223467v1:1:8553592:8557739... [more]
ENSORLT00000035028.13.267e-1129.11pep primary_assembly:ASM223467v1:2:7372701:7381259... [more]
ENSORLT00000032191.17.431e-1144.44pep primary_assembly:ASM223467v1:7:34400406:344015... [more]
ENSORLT00000030788.15.917e-1034.55pep primary_assembly:ASM223467v1:17:2264135:227416... [more]
back to top
BLAST of General transcription factor II-I repeat domain-containing protein 2B vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000010083.15.398e-10798.73SMESG000010083.1[more]
SMESG000058775.14.696e-5946.83SMESG000058775.1[more]
SMESG000058753.11.537e-5543.75SMESG000058753.1[more]
SMESG000058770.11.173e-5443.64SMESG000058770.1[more]
SMESG000058758.11.034e-5047.78SMESG000058758.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30033084 ID=SMED30033084|Name=General transcription factor II-I repeat domain-containing protein 2B|organism=Schmidtea mediterranea sexual|type=transcript|length=2836bp
AATATTTGTTTATTCTTCATCATGCCAAATTTTAAGAGAAGAAAATTAAT
TGAAGAAAAATTTAATATATATTAGGAATTGGATTCTTTTAGTTCTGTGG
AAGATAAAATGATTTATTTATTGTGGAAAAAGCTTGATACCACAGTCAAT
ACATTTTTAGCTTTGTTTGTGGATTTCAAGACATGGAAAAATAGAAATTC
TTCTTTGAAGTCTCCATCCTTGATGTACCGGATGAATACTAACCGTTGGG
TACAACTAGCAGCATATGTAGACTCATCCAGTTGGATGGCAATCTTCTTC
AGGAGTGCAGCACGTATCTCACTTACTACTTGCATCTTGATGTCATGTCC
CATATCTGCCATCCTGGCAGAATTGTGTCATATGTTAGAAGAATGTAGTT
AAGTTTCTTTTCCGCGTCTTCTCCAATCATGCAGCAAACAATATCTTTAA
AACAAGGGATAATTAGCTTCTCTGCGACAGCATGTGGTTTCTTTGATTGC
AGAATTCTCAGTGCCACTATGTACGATGCACGAACTACTGCTTGATTTTA
TTGACTGAGCTGTCCTGTATTGTGAAGAATTTATTTTATTCTAACCTCCA
TCGGCTTGAAGAAAGATGCATCCTTTTCGGTTTCTTCTGGATTACAGATG
TCGTTTGAGAAAACTTGGTTTCATGGAGGCTTTAGAGAGAATGGAAATAA
AAAAATGTCATTGTTGTATACTTCTATAGACACAGAACTTTTTATCAACT
CTTACCCTTTTACAAACTACACACTGTGGAATTTTGCCATTATTTTTCAC
AACTGATTTGAATCCATATTCAATATATATAGCATCATACACCCGTTTCT
TTGTCTTTGTTGGTGTAGTAATTACCATCAGGAGATGGTTAAATAAGTCT
GAATATGAATAATGATGTGCTGTAGGTTCACTTCACAGAAGAGATTGAAG
ATGCAATGCCTAATTTAGCAAATGAGATAAGAGAAATTGTAATGGCAGTT
AAGTGTCTATTGAACAGATATATTGCAGTTAAATATGGTCTAAGGAAGAT
AGATATTTATTAAAGTCAGATGTGTGAATGTGACAAGAAGTGCTTTGCAG
GTTTAGACACCAAAACAACCACACATGGGAAACTAACAGAATGGTTATAG
TAAATACAATGCAGAGTGAGCATGTATGCAAATGAGGGGATTGTTTATTT
ATTACTTCGTCAACTAGCAATATACATCAGGTAAAATTATGTGATTGTTA
AAATTATTTTACTCATTGTTTTTTGCAAAGGCTGCAGCAACTGGCGTAAC
CCTTGCTAAACGTCTAGCGTACCTAACGTGGTAGGTATACCACCGTTTGA
GAAAACCTGCATTAAATGAAAGCACTGATAAAACTTATCTTCCGAAACTT
TTATATTTTATTCGTGCTGTAACTAAAGATTTTCAGTGTTATGAAGAACT
TCTTGCGCTGGGTATATTAACTGGAAGAACTCTTATAGTTGACATTTTCG
AAAACTTCAGAAAAGTATGACATTGAATACAATCAAATGTCAGTAATTTA
GTCATTGTCTGCACGATGGGGCACCTTTCACGAGAGTTATTTATTGCTAT
ATTAAAAAGGGAAAACTTAAACTTGAAAAAATTGATATCATTTCACTACA
TTTTTCATCAGCAAAATATTTGAATAAATTTTATTATTTTTCCTTAAAAT
TAATTTATTTAAAAATATGTCTACTTCATTTTTATTTGAAGTGGCATTTA
AACATGTAAATAATTGCTTATTTAAAAAAATAACTACACAAAAAAATGTA
ATAATTTACCCTTAGATCGACATATCAATTAATGCGGCTTCCTTCAATTC
AGAGTGATTTAAATGTGGCCTCTAACGTTACAAAGGTTTCCTTTCTCTAG
GCTAAGTAGACAAAAAAAATTATTTATTTTTTAAAAATAAAGATTGTATT
TATTTTATTAGTATAATTATTTTAATTAATCTCCTCCAAAAATATTAATA
AATAATTATCCAATCAGATACACGCATTGGGTAATTTGAAGGGGATTGGT
TGCTGAAATATATATTAATCTTGCTCTTTCTAACAGTCTTTTAAGATTGA
TGAAGTTTATATTCATAAATTTAATATTTGTTGTCATAATAAATAATAAT
ATATCCCAGTTGAATGACTATCAACAATGTGAAAAATTAATGGTTTATGT
TTCTAATAGCCAAATGACGTACTGTGAAGCATGGCTTAATTGTTATAAAT
CAGGAGGGAGATTTATGCTGGAAAGTGAATTCTCAGTTATCGAAAAATGC
GGTAAACTTTTAAATAATACCCCATATTACATTGGATTAAATGATCTTGT
TTATGAGAGGAACAATAAGAGGACAGGTTGGATATTTAGTGACAGTTCCA
CATTAGTGAATACTAGTTACTGGTTTTGGAACCAGCCAAATGCAATGGCT
GGAAATGAAGATTGTGTTTTCTTTAGATCTAATTTCCTACACGATGTTAG
ATGTGATACTTTGACTGGATATATTTGCGTTCAAACAACATACAGAAATT
TCCAACCTAGACTTTATTCTATTGACTCAAGACGCCCTATCATAAATAAT
GACGACCAGGAAGGATGCTACGATTCATTCAAGCCAACAAATGAATTAGA
ATGTGCATTAATATCAATAACTCAACCATATTATAAATCATTTTATTTCG
ACACAGTGCAAAATGAATGCGTACTGACGAAATACGTTGACAGTTCTTTG
TCAAAGAAATACAACCAATTCGATCGTAATTGGAAAATATATTCTTGAGT
GATTAATTAATTGAATTTTAATTAAATATGCATTGA
back to top

protein sequence of SMED30033084-orf-1

>SMED30033084-orf-1 ID=SMED30033084-orf-1|Name=SMED30033084-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=233bp
MKFIFINLIFVVIINNNISQLNDYQQCEKLMVYVSNSQMTYCEAWLNCYK
SGGRFMLESEFSVIEKCGKLLNNTPYYIGLNDLVYERNNKRTGWIFSDSS
TLVNTSYWFWNQPNAMAGNEDCVFFRSNFLHDVRCDTLTGYICVQTTYRN
FQPRLYSIDSRRPIINNDDQEGCYDSFKPTNELECALISITQPYYKSFYF
DTVQNECVLTKYVDSSLSKKYNQFDRNWKIYS*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002089reproductive organ
Vocabulary: INTERPRO
TermDefinition
IPR001304C-type_lectin-like
IPR016186C-type_lectin-like/link_sf
IPR018378C-type_lectin_CS
IPR016187CTDL_fold
Vocabulary: molecular function
TermDefinition
GO:0003676nucleic acid binding
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016186C-type lectin-like/link domain superfamilyGENE3DG3DSA:3.10.100.10coord: 11..145
e-value: 6.3E-15
score: 57.1
IPR018378C-type lectin, conserved sitePROSITEPS00615C_TYPE_LECTIN_1coord: 122..143
IPR001304C-type lectin-likePROSITEPS50041C_TYPE_LECTIN_2coord: 33..144
score: 10.996
NoneNo IPR availableCDDcd00037CLECTcoord: 33..143
e-value: 1.61696E-10
score: 54.9333
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..19
score: 0.609
IPR016187C-type lectin foldSUPERFAMILYSSF56436C-type lectin-likecoord: 24..144