DDE_Tnp_IS1595 domain-containing protein

Overview
NameDDE_Tnp_IS1595 domain-containing protein
Smed IDSMED30032980
Length (bp)1077
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of DDE_Tnp_IS1595 domain-containing protein (SMED30032980) t-SNE clustered cells

Violin plots show distribution of expression levels for DDE_Tnp_IS1595 domain-containing protein (SMED30032980) in cells (dots) of each of the 12 neoblast clusters.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30032980

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 4

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
Smed sexual biotypeSMED30032980SMESG000036778.1 SMESG000005668.1 SMESG000003594.1 Contig52497newmark_estsPMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30032980SMESG000036778.1 SMESG000005668.1 SMESG000003594.1 Contig52497uc_Smed_v2PMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
epidermisSMED30032980 dd_Smed_v4_23804_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Category 3 cellSMED30032980 dd_Smed_v4_23804_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017
whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of DDE_Tnp_IS1595 domain-containing protein vs. Ensembl Zebrafish
Match: si:dkey-6f10.4 (si:dkey-6f10.4 [Source:ZFIN;Acc:ZDB-GENE-041210-340])

HSP 1 Score: 68.9366 bits (167), Expect = 1.374e-12
Identity = 54/193 (27.98%), Postives = 95/193 (49.22%), Query Frame = 3
Query:  270 DARIEVIFQEVILFIYSWSKELTSIKFCENELDISKSAVINWNMYMREVCVNSL----LRNPVIIGGPN--TIVEIDESLFT-RRKNHMGK-----KLPQQWIFGVISRDTGKSL--MLVVTDRN----APILP-----GTTTMSDQ*SAYNGIAVAISMGYSHETVNHSLDFIDPNNSANTQKIERSWKSAK 779
            ++RI ++     ++ +S    L  I   ++ +  + + +   N  +R+VC+ +L     R  + +GG +    V IDES F  +RK + G+     +  + W+FG++     + L  + +V DR+     PI+      G+T  SD   AY  +     + Y H TVNHS +F+DP    +TQ IER+W + K
Sbjct:   99 NSRIPLVKWMEYIYRFSQGLHLRQIDLMDDGVAKTSTTLSRMNKLLRKVCIKALSNLKRRTGLRVGGKSRQKFVAIDESKFAHKRKFNRGRFCTTWQRRKGWVFGMMEVKGDRRLPVLKMVKDRSRTTLVPIITRHIRRGSTVYSDNWRAY--LNALQPLRYRHLTVNHSENFVDPQTGCHTQHIERAWLAIK 289          
BLAST of DDE_Tnp_IS1595 domain-containing protein vs. Ensembl Zebrafish
Match: si:dkey-6f10.4 (si:dkey-6f10.4 [Source:ZFIN;Acc:ZDB-GENE-041210-340])

HSP 1 Score: 68.9366 bits (167), Expect = 1.374e-12
Identity = 54/193 (27.98%), Postives = 95/193 (49.22%), Query Frame = 3
Query:  270 DARIEVIFQEVILFIYSWSKELTSIKFCENELDISKSAVINWNMYMREVCVNSL----LRNPVIIGGPN--TIVEIDESLFT-RRKNHMGK-----KLPQQWIFGVISRDTGKSL--MLVVTDRN----APILP-----GTTTMSDQ*SAYNGIAVAISMGYSHETVNHSLDFIDPNNSANTQKIERSWKSAK 779
            ++RI ++     ++ +S    L  I   ++ +  + + +   N  +R+VC+ +L     R  + +GG +    V IDES F  +RK + G+     +  + W+FG++     + L  + +V DR+     PI+      G+T  SD   AY  +     + Y H TVNHS +F+DP    +TQ IER+W + K
Sbjct:   99 NSRIPLVKWMEYIYRFSQGLHLRQIDLMDDGVAKTSTTLSRMNKLLRKVCIKALSNLKRRTGLRVGGKSRQKFVAIDESKFAHKRKFNRGRFCTTWQRRKGWVFGMMEVKGDRRLPVLKMVKDRSRTTLVPIITRHIRRGSTVYSDNWRAY--LNALQPLRYRHLTVNHSENFVDPQTGCHTQHIERAWLAIK 289          
BLAST of DDE_Tnp_IS1595 domain-containing protein vs. Ensembl Zebrafish
Match: si:dkey-17m8.2 (si:dkey-17m8.2 [Source:ZFIN;Acc:ZDB-GENE-110411-234])

HSP 1 Score: 68.1662 bits (165), Expect = 1.854e-12
Identity = 54/193 (27.98%), Postives = 95/193 (49.22%), Query Frame = 3
Query:  270 DARIEVIFQEVILFIYSWSKELTSIKFCENELDISKSAVINWNMYMREVCVNSL----LRNPVIIGGPN--TIVEIDESLFT-RRKNHMGK-----KLPQQWIFGV--ISRDTGKSLMLVVTDRN----APILP-----GTTTMSDQ*SAYNGIAVAISMGYSHETVNHSLDFIDPNNSANTQKIERSWKSAK 779
            ++RI ++     ++ +S    L  I   ++ +  + + +   N  +R+VC+ +L     R  + +GG +    V IDES F  +RK + G+     +  + W+FG+  +  D    ++ +V DR+     PI+      G+T  SD   AY  +     + Y H TVNHS +F+DP    +TQ IER+W + K
Sbjct:   80 NSRIPLVKWMEYIYRFSQGLHLRQIDLMDDGVAKTSTTLSRINKLLRKVCIKALSNLKRRTGLRVGGKSRQKFVAIDESKFAHKRKFNRGRFCTTWQRRKGWVFGMMEVKGDHRLPVLKMVKDRSRTTLVPIITRHIRRGSTVYSDNWRAY--LNALQPLRYRHLTVNHSENFVDPQTGCHTQHIERAWLAIK 270          
BLAST of DDE_Tnp_IS1595 domain-containing protein vs. TrEMBL
Match: A0A146LFY4 (Putative transposase-like protein HI_1328.1 OS=Lygus hesperus OX=30085 GN=HI_1328.1_3 PE=4 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 1.032e-59
Identity = 101/203 (49.75%), Postives = 131/203 (64.53%), Query Frame = 3
Query:  297 EVILFIYSWSKELTSIKFCENELDISKSAVINWNMYMREVCVNSLLRNPVIIGGPNTIVEIDESLFTRRKNHMGKKLPQQWIFGVISRDTGKSLMLVVTDRNAP---------ILPGTTTMSDQ*SAYNGIAVAISMGYSHETVNHSLDFIDPNNSANTQKIERSWKSAKEGNKRHIETHCHMLDSYLCVYIWRNRLKMRHAD 878
            +++LFIY+W+ E+ S+KFCE EL ++ + V+ W  YM EVC NS+LR    IGGPN  VEIDESLF+RRKNH G++LPQQ IFG I R+T +  ++ V DR +          I+PGTT MSDQ SAY   A+A    + H TVNHSL+F+DP   A+TQ IE  W   K  NK    T   +LDSYLC ++WR  +K R  D
Sbjct:   77 DIVLFIYAWADEMVSVKFCEKELSMNHNTVVGWCNYMHEVCANSILRIQSRIGGPNMTVEIDESLFSRRKNHTGRQLPQQRIFGGICRETKECFLVAVPDRTSATLMSVIKDRIMPGTTIMSDQWSAYG--ALARDPNFRHFTVNHSLNFVDPTTGAHTQSIESLWGKCKTRNKLQWGTRRSLLDSYLCEFMWRQTVKARQVD 277          
BLAST of DDE_Tnp_IS1595 domain-containing protein vs. TrEMBL
Match: A0A0A9YMJ9 (Putative transposase-like protein HI_1328.1 OS=Lygus hesperus OX=30085 GN=CM83_19026 PE=4 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 2.767e-58
Identity = 100/203 (49.26%), Postives = 131/203 (64.53%), Query Frame = 3
Query:  297 EVILFIYSWSKELTSIKFCENELDISKSAVINWNMYMREVCVNSLLRNPVIIGGPNTIVEIDESLFTRRKNHMGKKLPQQWIFGVISRDTGKSLMLVVTDRNAP---------ILPGTTTMSDQ*SAYNGIAVAISMGYSHETVNHSLDFIDPNNSANTQKIERSWKSAKEGNKRHIETHCHMLDSYLCVYIWRNRLKMRHAD 878
            +++LFIY+W+ E+ S+KFCE EL ++ + V++W  YM EVC NS+LR    IGGPN  VEIDESLF+RRKNH G++LPQQ IFG I R+T +  ++ V DR +          I+PGTT MSDQ SAY   A+A    + H TVNHSL+F+D    A+TQ IE  W   K  NK    T   +LDSYLC ++WR  +K R  D
Sbjct:   77 DIVLFIYAWANEMVSVKFCEKELSMNHNTVVDWCNYMHEVCANSILRIQSRIGGPNMTVEIDESLFSRRKNHTGRQLPQQRIFGGICRETKECFLVAVPDRTSATLMSVIKDRIMPGTTIMSDQWSAYG--ALARDPNFRHFTVNHSLNFVDLTTGAHTQSIESLWGKCKTRNKLQWGTRRSLLDSYLCEFMWRQTVKARQVD 277          
BLAST of DDE_Tnp_IS1595 domain-containing protein vs. TrEMBL
Match: A0A0L8G6F6 (DDE_Tnp_IS1595 domain-containing protein OS=Octopus bimaculoides OX=37653 GN=OCBIM_22039385mg PE=4 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.365e-56
Identity = 96/206 (46.60%), Postives = 136/206 (66.02%), Query Frame = 3
Query:  291 FQEVILFIYSWSKELTSIKFCENELDISKSAVINWNMYMREVCVNSLLRNPVIIGGPNTIVEIDESLFTRRKNHMGKKLPQQWIFGVISRDTGKSLMLVVTDRNA----PIL-----PGTTTMSDQ*SAYNGIAVAISMG-YSHETVNHSLDFIDPNNSANTQKIERSWKSAKEGNKRHIETHCHMLDSYLCVYIWRNRLKMRHAD 878
            F +   FIY W+ +L S+ FCE+EL++  S +++WN Y+REVC   +L NP +IGGPN  VEIDESLFT+RK+  G++ P+Q +FG I ++T +  M  V DR+A    PI+     PGTT +S + S Y  I   I+ G + H TV +SL F+DP N+A+TQ  ER WKSAKE NKR   TH  +LDSY+C ++WR  ++++  D
Sbjct:   74 FHKAAFFIYCWAHDLASVNFCEHELEMKASCIVDWNNYLREVCAAHILSNPKVIGGPNMTVEIDESLFTKRKSCAGRQPPRQLVFGGICKETKECFMFTVPDRSATTLLPIIENNIRPGTTIISAEWSTYENI---INSGRFQHLTVKNSLHFVDPTNTAHTQNSERLWKSAKEKNKRENGTHRALLDSYMCEFMWRQEIELKKLD 276          
BLAST of DDE_Tnp_IS1595 domain-containing protein vs. TrEMBL
Match: A0A1B6H5F2 (DDE_Tnp_IS1595 domain-containing protein (Fragment) OS=Homalodisca liturata OX=320908 GN=g.11270 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.823e-55
Identity = 95/199 (47.74%), Postives = 127/199 (63.82%), Query Frame = 3
Query:  291 FQEVILFIYSWSKELTSIKFCENELDISKSAVINWNMYMREVCVNSLLRNPVIIGGPNTIVEIDESLFTRRKNHMGKKLPQQWIFGVISRDTGKSLMLVVTDRNA----PIL-----PGTTTMSDQ*SAYNGIAVAISMGYSHETVNHSLDFIDPNNSANTQKIERSWKSAKEGNKRHIETHCHMLDSYLCVYIWRNRL 860
            F  V+LFIY WS +LTS+ FCE EL I+ + +++WN Y+REVC   LL NP++IGGP   VEIDES+F +RK ++G+   +QWIFG I  +T    +  V DR+A    PI+     PGT  +SD+  +YNGI  A S  Y H TVNHS +FIDP   A+   ++R W  AK   +R   TH  +LDSYLC ++WR RL
Sbjct:   68 FDRVLLFIYCWSHKLTSVDFCERELKINHNTIVDWNNYLREVCAAKLLANPLVIGGPGLTVEIDESVFAKRKYNVGRVPKKQWIFGGICHETKDCFLFAVEDRSAASLMPIIVESIAPGTRIVSDKWRSYNGIRNANS-NYDHNTVNHSENFIDPGTGAHINTVKRMWGVAKSSFRRQYGTHSKLLDSYLCEFMWRKRL 265          
BLAST of DDE_Tnp_IS1595 domain-containing protein vs. TrEMBL
Match: A0A146M1Q1 (Putative transposase-like protein HI_1328.1 (Fragment) OS=Lygus hesperus OX=30085 GN=HI_1328.1_0 PE=4 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 2.493e-52
Identity = 95/225 (42.22%), Postives = 141/225 (62.67%), Query Frame = 3
Query:  273 ARIEVIFQEVILFIYSWSKELTSIKFCENELDISKSAVINWNMYMREVCVNSLLR-NPVIIGGPNTIVEIDESLFTRRKNHMGKKLPQQWIFGVISRDTGKSLMLVVTDRNAPIL---------PGTTTMSDQ*SAYNGIAVAISMGYSHETVNHSLDFIDPNNSANTQKIERSWKSAKEGNKRHIETHCHMLDSYLCVYIWRNRLKMRHADQCNNNVTLIIASY 917
             R ++ F  VI FIY W++ELTS+ FC  +L ++ + V++WN Y+REVCV S+ R N   IGG   IVEIDESLF++RK+++G+ LPQQW+FG + R+TG+  ++ V +R A  L         PG+T MSD    Y+   +  + G++H  VNH  +F+DP   ANTQ++ER W SAK  NK+   T  H LD+YL  Y+WR+ + +   D   N +   I+++
Sbjct:   56 GRSKLSFTTVIRFIYFWAEELTSVNFCHKQLGMAPNTVVDWNNYLREVCVFSVERKNSGKIGGAGKIVEIDESLFSKRKSNVGRVLPQQWVFGGLCRETGQRFLVKVPNRGAVTLLSEIKKNIEPGSTIMSDSWRGYSTQELE-NAGFAHFKVNHKYNFVDPETGANTQQVERMWGSAKWRNKKQRGTARHHLDTYLVEYMWRSGV-VASGDDAFNTILADISAF 278          
BLAST of DDE_Tnp_IS1595 domain-containing protein vs. Ensembl Nematostella
Match: EDO49358 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RG49])

HSP 1 Score: 79.337 bits (194), Expect = 8.770e-17
Identity = 63/223 (28.25%), Postives = 101/223 (45.29%), Query Frame = 3
Query:  297 EVILFIYSWSKELTSIKFCENELDISKSAVINWNMYMREVCVNSLLRNPVI-IGGPNTIVEIDESLFT-RRKNHMGKKLPQQWIFGVISR--DTGKSLMLVVTDRN----APIL-----PGTTTMSDQ*SAYNGIAVAISMGYSHETVNHSLDFIDPNNSANTQKIERSWKSAKEGNKRHIETHCHMLDSYLCVYIWRNRLKMRHADQCN-NNVTLIIASYIR 923
            ++++ IY WS E+  ++     L ++   V      +R +C   ++  PV   GGPN + + DE++ + +RK   G+   Q+W+FG ++      +    VV  R     API+     PG+   SD   AY  I        SH  V H   F+DP    NTQ+IE +W   K   K         L S+L   +WR        ++C  +N+ L+I+ Y R
Sbjct:   81 KLVVLIYFWSVEVLQVQ-ASTMLGMTPQMVGKVCRALRLLCSRDVVDRPVYPFGGPNHVCKCDETVISFKRKYGRGRISRQRWVFGQVTTAFQPCRGYYTVVNKRTREVLAPIIQEVLQPGSVFHSDDWGAYRNITAHAPNVSSHRVVVHKDYFVDPVTGVNTQEIESTWARVKRMVKSKKRIPTADLQSHLDEVMWRQ----WRGEKCPFDNMVLLISRYYR 298          
BLAST of DDE_Tnp_IS1595 domain-containing protein vs. Ensembl Nematostella
Match: EDO42124 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S2D6])

HSP 1 Score: 65.855 bits (159), Expect = 3.212e-12
Identity = 37/102 (36.27%), Postives = 60/102 (58.82%), Query Frame = 3
Query:  273 ARIEVIFQEVILFIYSWSKEL---TSIKFCENELDISKSAVINWNMYMREVCVNSLLRNPVI-IGGPNTIVEIDESLFTRRKNHMGKKLP--QQWIFGVISR 560
             RIE+   ++++ I+SW+K+L   TS + C    D+S+ AV + +  +R++C   L R PVI  GGP  + +IDES F  +  H   + P  + W+FGV+ R
Sbjct:  130 PRIEL--SKIVIIIHSWAKKLKQKTSAEMC----DVSERAVGHISARIRDICAEDLRRRPVIPFGGPGVVCQIDESRFNHKPKHNRGRPPMRENWVFGVVHR 225          
BLAST of DDE_Tnp_IS1595 domain-containing protein vs. Ensembl Nematostella
Match: EDO44629 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RVE9])

HSP 1 Score: 56.9954 bits (136), Expect = 3.966e-10
Identity = 41/128 (32.03%), Postives = 62/128 (48.44%), Query Frame = 3
Query:  441 PVI-IGGPNTIVEIDESLFTRRKNHMGKKLP--QQWIFGVISR--DTGKSLMLVVTDRNA----PI-----LPGTTTMSDQ*SAYNGIAVAISMGYSHE-TVNHSLDFIDPNNSANTQKIERSWKSAK 779
            PVI  GGP  + +IDES F  +  +   + P  + W+FGV+S      +    +V  R+A    PI     LPG+T  SD  +AY  +   +    +++  V H  +F+DP    +TQ IE  W   K
Sbjct:    1 PVIPFGGPGIVCQIDESRFNHKPKYNRGRPPMRENWVFGVLSTAYSPSRGYFQLVPRRDAETLLPIIQRALLPGSTVHSDDWAAYRRLQARLPNVVANQGVVVHRYNFVDPITGVHTQNIESLWSRLK 128          
BLAST of DDE_Tnp_IS1595 domain-containing protein vs. Ensembl Nematostella
Match: EDO33828 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SR40])

HSP 1 Score: 56.225 bits (134), Expect = 6.135e-10
Identity = 39/128 (30.47%), Postives = 61/128 (47.66%), Query Frame = 3
Query:  441 PVI-IGGPNTIVEIDESLFTRRKNHMGKKLP--QQWIFGVISR--DTGKSLMLVVTDRNA---------PILPGTTTMSDQ*SAYNGIAVAI-SMGYSHETVNHSLDFIDPNNSANTQKIERSWKSAK 779
            PVI  GGP  + +IDES F  +  +   + P  + W+FGV+S      +    +V  R+A          +LPG+T  SD  +AY  +   + ++  +   V H  +F+DP    +TQ IE  W   K
Sbjct:    1 PVIPFGGPGIVCQIDESRFNHKPKYNRGRPPMRENWVFGVLSTAYSPSRGYFQLVPRRDAETLLTIIQRALLPGSTVHSDDWAAYRRLQARLPNIVANQGVVVHRYNFVDPITGVHTQNIESLWSRLK 128          
BLAST of DDE_Tnp_IS1595 domain-containing protein vs. Ensembl Nematostella
Match: EDO42125 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S2D7])

HSP 1 Score: 54.299 bits (129), Expect = 3.755e-9
Identity = 26/68 (38.24%), Postives = 40/68 (58.82%), Query Frame = 3
Query:  366 DISKSAVINWNMYMREVCVNSLLRNPVI-IGGPNTIVEIDESLFTRRKNHMGKKLP--QQWIFGVISR 560
            D+S+ AV + +  +R++C   L R PVI  GGP  + +IDES F  +  H   + P  + W+FGV+ R
Sbjct:    3 DVSERAVGHISARIRDICAEDLRRRPVIPFGGPGVVCQIDESRFNHKPKHNRGRPPMRENWVFGVVHR 70          
BLAST of DDE_Tnp_IS1595 domain-containing protein vs. Planmine SMEST
Match: SMESG000036215.1 (SMESG000036215.1)

HSP 1 Score: 103.605 bits (257), Expect = 8.637e-27
Identity = 45/61 (73.77%), Postives = 54/61 (88.52%), Query Frame = 3
Query:  303 ILFIYSWSKELTSIKFCENELDISKSAVINWNMYMREVCVNSLLRNPVIIGGPNTIVEIDE 485
            I+FIY WSKELTSI+FCE EL+I KS+VI+WN YMREVC N+L+ NP++IGGPNT VEIDE
Sbjct:   28 IIFIYCWSKELTSIRFCETELEIFKSSVIDWNNYMREVCANTLINNPIVIGGPNTTVEIDE 88          
BLAST of DDE_Tnp_IS1595 domain-containing protein vs. Planmine SMEST
Match: SMESG000054196.1 (SMESG000054196.1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.399e-19
Identity = 66/197 (33.50%), Postives = 90/197 (45.69%), Query Frame = 3
Query:  372 SKSAVINWNMYMREVCVNSLLRNPVIIGGPNTIVEIDESLF-------------------------TRRKNHMGKKLPQQWIFGVISRDTGKSLMLVVTDRNAPIL---------PGTTTMSDQ*SAYNGIAVAISMGYSHETVNHSLDFIDPNNSANTQKIERSWKSAKEG-NKRHIETHCHMLDSYLCVYIWRNR 857
            S   V++W  ++R+V     +    I G  N  V+IDESLF                          RR N+ G ++   WIFG++  DT +  M  V  R+A  L         PGTT +SD   AY  I   IS+G+ HE V H  +FIDP   ANTQ+IE  W  AK    K    T   +L S+L  +++R R
Sbjct:    8 SSKTVVDWTNFIRDVMRKERIMRLKIEGVGNR-VQIDESLFRGKRKYNRGRLLLGDFDVENEADSGLRRSNY-GTRINGPWIFGMVEEDTNEMFMFYVEKRDAATLLPLIVEHVEPGTTIVSDGWRAYLNI---ISLGFFHEVVKHEENFIDPTTGANTQRIECGWGQAKLLIMKLKRGTTLGLLQSHLDEFVFRKR 199          
BLAST of DDE_Tnp_IS1595 domain-containing protein vs. Planmine SMEST
Match: SMESG000074868.1 (SMESG000074868.1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.546e-17
Identity = 59/205 (28.78%), Postives = 106/205 (51.71%), Query Frame = 3
Query:  273 ARIEVIFQEVILFIYSWSKELTSIKFCENELDISKSAVINWNMYMREVCVNSLLRNPVIIGGPNTIVEIDESLFTRR-KNHMGKK-LPQQWIFGVI-SRDT-GKSLMLVVTDRNA----PIL-----PGTTTMSDQ*SAYNGIAVAISMGYSHETVNHSLDFIDPNNSANTQKIERSWKSAKEGNKRHIETHCHMLDSYLCVYIW 848
            A   +  + +++  +++S+E+  + F +NELD S++ +I +   +R +C +      +++G   +IVE+DESLF  + K H G+  L + W+ G++ +R T  +  M +V  R+A    PIL     P +   +D   AY      ++  + H+TVNH L F+D +   +TQ IE  W   K   K        +L+ YL  ++W
Sbjct:   81 ASFNISLKNILVIFWTFSQEIQIVDF-KNELDCSENTIIKFYGALRRLCRDYYAGKRIVLGDTQSIVEVDESLFRHKPKYHRGRATLNEAWVVGIVDTRYTPARGYMQLVRSRSAESLLPILLKKIHPESIVRTDMWRAY----FNLNRLFEHQTVNHRLCFVDRSTGVHTQTIESYWSRQKYRLKCLRGIKLSVLNEYLATFMW 280          
BLAST of DDE_Tnp_IS1595 domain-containing protein vs. Planmine SMEST
Match: SMESG000079181.1 (SMESG000079181.1)

HSP 1 Score: 72.7886 bits (177), Expect = 5.557e-15
Identity = 47/161 (29.19%), Postives = 72/161 (44.72%), Query Frame = 3
Query:  405 MREVCVNSLLRNPVIIGGPNTIVEIDESLFTRRKNHMGKKLPQQWIFGVISRDTGKSLMLVVTDRNAPIL---------PGTTTMSDQ*SAYNGIAVAISMGYSHETVNHSLDFIDPNNSANTQKIERSWKSAKEGNKRHIETHCHMLDSYLCVYIWRNRL 860
            +REV      +N ++IG    +VEIDES   RRK   G  + +QW+F  +  +     ++ +  RN   L         PG+   SD  +AY  + V   +GY H  VN   +++DP + A T   E   +  K  N     T      S+L  ++WR R 
Sbjct:    2 LREVMFEYFNQNTIMIGRLGILVEIDESQLVRRKYERGHLVREQWVFDGVEVENKIGFLVPIEKRNRETLQCMIRKFIRPGSIIHSDFWAAYGDLTV---LGYFHFKVNLEENYVDPISGATTNHQESRCQKVKMRNIMRYGTARTTFGSHLIEFLWRQRF 159          
BLAST of DDE_Tnp_IS1595 domain-containing protein vs. Planmine SMEST
Match: SMESG000013793.1 (SMESG000013793.1)

HSP 1 Score: 62.3882 bits (150), Expect = 3.103e-11
Identity = 41/138 (29.71%), Postives = 72/138 (52.17%), Query Frame = 3
Query:  396 NMYMREVCVNSLLRNPVIIGGPNTIVEIDESLFTRRKNHMGKKLPQQWIF-GVISRDTGKSLMLVVTDRNAPI---------LPGTTTMSDQ*SAYNGIAVAISMGYSHETVNHSLDFIDPNNSANTQKIERSWKSAK 779
            N+ +++VC  S+ R  + IGGP  +V++DES F +RK ++G ++   W+F GV      K   ++V  R+A           LPG+T ++D     +     I+  ++H   NHS+ F++ N   NT  I+ ++   K
Sbjct:   27 NILLKKVC-ESVSREDLRIGGPGVLVQLDESKFGKRKYNLGHRVEGTWVFAGVEKTPERKCFAVIVDKRDADTVNFLILKYALPGSTVVTDGWKGNDTFKNNIN--FTHHWANHSVTFVN-NEGFNTYTIDGTFNGMK 160          
The following BLAST results are available for this feature:
BLAST of DDE_Tnp_IS1595 domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of DDE_Tnp_IS1595 domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of DDE_Tnp_IS1595 domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of DDE_Tnp_IS1595 domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 3
Match NameE-valueIdentityDescription
si:dkey-6f10.41.374e-1227.98si:dkey-6f10.4 [Source:ZFIN;Acc:ZDB-GENE-041210-34... [more]
si:dkey-6f10.41.374e-1227.98si:dkey-6f10.4 [Source:ZFIN;Acc:ZDB-GENE-041210-34... [more]
si:dkey-17m8.21.854e-1227.98si:dkey-17m8.2 [Source:ZFIN;Acc:ZDB-GENE-110411-23... [more]
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BLAST of DDE_Tnp_IS1595 domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of DDE_Tnp_IS1595 domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of DDE_Tnp_IS1595 domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of DDE_Tnp_IS1595 domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A146LFY41.032e-5949.75Putative transposase-like protein HI_1328.1 OS=Lyg... [more]
A0A0A9YMJ92.767e-5849.26Putative transposase-like protein HI_1328.1 OS=Lyg... [more]
A0A0L8G6F62.365e-5646.60DDE_Tnp_IS1595 domain-containing protein OS=Octopu... [more]
A0A1B6H5F23.823e-5547.74DDE_Tnp_IS1595 domain-containing protein (Fragment... [more]
A0A146M1Q12.493e-5242.22Putative transposase-like protein HI_1328.1 (Fragm... [more]
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BLAST of DDE_Tnp_IS1595 domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of DDE_Tnp_IS1595 domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of DDE_Tnp_IS1595 domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of DDE_Tnp_IS1595 domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5
Match NameE-valueIdentityDescription
EDO493588.770e-1728.25Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO421243.212e-1236.27Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO446293.966e-1032.03Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO338286.135e-1030.47Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO421253.755e-938.24Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of DDE_Tnp_IS1595 domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of DDE_Tnp_IS1595 domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000036215.18.637e-2773.77SMESG000036215.1[more]
SMESG000054196.11.399e-1933.50SMESG000054196.1[more]
SMESG000074868.12.546e-1728.78SMESG000074868.1[more]
SMESG000079181.15.557e-1529.19SMESG000079181.1[more]
SMESG000013793.13.103e-1129.71SMESG000013793.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30032980 ID=SMED30032980|Name=DDE_Tnp_IS1595 domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1077bp
TGTTCATAATACGTCATATTAGAGAAACCATCTTGTTTATTGTTTTGTTT
TTTTTAATTTTAAATTCAATCGATAAAAAATAATGAAAAAGCAGTCATAC
ACGACATATCTAGTAGCGTTCGCTTTCTACAGCTGCGTAGTATTTTACAC
AATCCACGCATATGAAACAACAATTAATGTATGGTACTGTCGTTGACGAA
TATTCACGATCACTTGCAGTGCAGTCGAAGAAGTTGCAGAGAGACGATCC
ATGTGCCACGAGACATATAGATGCAAGGATCGAAGTTATCTTTCAGGAAG
TCATCCTATTTATCTACAGTTGGAGCAAGGAGCTGACTAGCATCAAGTTC
TGTGAAAATGAATTGGATATTTCGAAATCTGCTGTGATCAATTGGAACAT
GTACATGCGTGAGGTATGTGTAAACAGTCTTCTGCGGAATCCTGTAATTA
TTGGAGGGCCTAACACAATAGTTGAAATAGACGAAAGCCTCTTCACAAGA
CGTAAAAATCACATGGGCAAGAAGCTGCCGCAGCAGTGGATTTTTGGCGT
CATTAGTCGTGACACCGGAAAAAGTTTAATGTTGGTTGTCACCGATAGAA
ATGCTCCCATTCTTCCGGGAACAACAACTATGTCAGATCAGTAAAGTGCT
TACAATGGAATAGCTGTTGCAATTAGTATGGGTTACAGTCACGAAACAGT
GAATCACAGCCTAGATTTCATTGATCCTAATAACAGTGCTAACACCCAAA
AAATCGAGCGGTCATGGAAATCTGCAAAGGAAGGAAATAAACGACACATC
GAGACTCATTGTCATATGTTAGACTCTTATCTGTGCGTATACATATGGAG
AAATCGTCTGAAAATGAGACACGCTGATCAATGTAATAATAATGTAACAT
TAATTATAGCTAGCTATATTCGTTGCTTATTAATTGTAAATTTCTAAGAT
GTTTTTACAATATGTCTTTAAAAGAATTTACGATTTACATAGGAAATGCT
TGGTGGTAGGATAAAAAAAGTACCTTTTATTTTATATTTCGTGGTTACTC
TTCCCTAAAATATCAAAACTTAAATGA
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protein sequence of SMED30032980-orf-1

>SMED30032980-orf-1 ID=SMED30032980-orf-1|Name=SMED30032980-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=161bp
MKQQLMYGTVVDEYSRSLAVQSKKLQRDDPCATRHIDARIEVIFQEVILF
IYSWSKELTSIKFCENELDISKSAVINWNMYMREVCVNSLLRNPVIIGGP
NTIVEIDESLFTRRKNHMGKKLPQQWIFGVISRDTGKSLMLVVTDRNAPI
LPGTTTMSDQ*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000035Category 3 cell