SMED30032843

Overview
NameSMED30032843
Smed IDSMED30032843
Length (bp)1939
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30032843 (SMED30032843) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30032843 (SMED30032843) in cells (dots) of each of the 12 neoblast clusters.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30032843

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 9

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
central nervous systemSMED30032843SMESG000062936.1 SMESG000024338.1 SMESG000024319.1 SMESG000024308.1 dd_Smed_v4_18000_0_1dd_Smed_v4PMID:27063937
Scimone et al., 2016
whole organism asexual adult colorimetric in situ hybridization evidence
posterior region of the whole animalSMED30032843SMESG000062936.1 SMESG000024338.1 SMESG000024319.1 SMESG000024308.1 dd_Smed_v4_18000_0_1dd_Smed_v4PMID:27063937
Scimone et al., 2016
whole organism asexual adult colorimetric in situ hybridization evidence
pigment cellSMED30032843SMESG000062936.1 SMESG000024338.1 SMESG000024319.1 SMESG000024308.1 SmedASXL_075274SmedAsxl_ww_GCZZ01PMID:29158443
He et al., 2017
whole organism asexual adult RNA-sequencing evidence
nervous systemSMED30032843SMESG000062936.1 SMESG000024338.1 SMESG000024319.1 SMESG000024308.1 dd_Smed_v4_18000_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30032843SMESG000062936.1 SMESG000024338.1 SMESG000024319.1 SMESG000024308.1 dd_Smed_v4_18000_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30032843SMESG000062936.1 SMESG000024338.1 SMESG000024319.1 SMESG000024308.1 dd_Smed_v4_18000_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30032843SMESG000062936.1 SMESG000024338.1 SMESG000024319.1 SMESG000024308.1 dd_Smed_v4_18000_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30032843SMESG000062936.1 SMESG000024338.1 SMESG000024319.1 SMESG000024308.1 dd_Smed_v4_18000_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30032843SMESG000046431.1 SMESG000027653.1 SMESG000058066.1 SMESG000024319.1 OX_Smed_1.0.16323ox_Smed_v2PMID:24238224
Kao et al., 2013
whole organism asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30032843 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.014194:1575..3431 -8751
v31.004569:34383..36238 +8748
Homology
BLAST of SMED30032843 vs. Planmine SMEST
Match: SMESG000024319.1 (SMESG000024319.1)

HSP 1 Score: 1012.68 bits (2617), Expect = 0.000e+0
Identity = 550/571 (96.32%), Postives = 562/571 (98.42%), Query Frame = -3
Query:   90 MTNTARENLVNSLPVLKDKLFIKTGENSDKSINKILLRNNIDNITFSDGLFYATNKVTEFDFSTGCSDILFNLGHVNFYKISKSNKDFQEILKISNINEKIINMIFLLNCLKLENKIAQNSKLPYHRFAYNYILNCGVLHSVLSVDELANYRLEDFQTWGPKIIERISKNSYYYTSCSEMLLVLKKHKLQLEYDSLNNIIDPGVILKINSFYKFIEKNSDNIKCQIDYIKYIKYIXXXXXXXXXXXXXXXXXXNAVSFISNILNFKIKLLNRGVEKCFYXXXXXXXXXSDLGAAVVEXXXXXXXXXXXXXXXXIPKFALPLKPKTMLNSCIQVDNLENSVLAVKSPSVGMVQMSVDSHLHLSDKFTVPVESNQEKSCISDFLTTTRSSTVKASENSDLSVVLKTAQSSTIMPVIETTEHNSVEIKSDISEVGTEILNDPSGDSCAGEVSSPFCKTRSQIKFKDRVKETERVPMPQSLSATLIDKYGPHDKSKWFTDLDISSYLEWKINDDKHFALNAGIVDAIASKLDDYKPPLLEKLVMCDSVLCPLNIKNQHWVLFVYIKSTSESFVME 1802
            MTNTARENLVNSLPVLKDKLFIKTGENSDKSINK+LLRNNIDNITFSDGLFYATNKVTEFDFSTGCSDILFNLGHVNFYKISKSNKDFQEILKISNINEKIINMIFLLNCLKLENKIAQNSKLPYHRFAYNYILNCGVLHSVLSVDELANYRLEDFQTWGPKIIERISKNSYYYTSCSEMLLVLKKHKLQLEYDSLNNIIDPGVILKINSFYKFIEKNSDNIKCQIDYIKYI    ENKSTFKSSNKNDNSSQNAVSFISNILNFKIKLLNRGVEKCFYSKSSKSICSSDLGAAVVELIDFFKEILLKKFKEEIPKFALPLKPKTMLNSCIQ+DNLENSVLAVKSPSVGMVQ+SVDSHLHLSDKFTVPVESN+ +SC+SDFLTT R STVKASENSDLSVVLKTAQSSTIMPVIETTEHNSVEI+ DISEVGTEILNDPSGDSCAGEVSSPFCKTRSQIKFKDRVKETERVPMPQSLSATLIDKYGPHDKSKWFTDLDISSYLEWKINDDKHFALNAGIVDAIASKLDDYKPPLLE+LV CD++LCPLNIKNQHWVLFVYIKS+SESFVM+
Sbjct:    1 MTNTARENLVNSLPVLKDKLFIKTGENSDKSINKLLLRNNIDNITFSDGLFYATNKVTEFDFSTGCSDILFNLGHVNFYKISKSNKDFQEILKISNINEKIINMIFLLNCLKLENKIAQNSKLPYHRFAYNYILNCGVLHSVLSVDELANYRLEDFQTWGPKIIERISKNSYYYTSCSEMLLVLKKHKLQLEYDSLNNIIDPGVILKINSFYKFIEKNSDNIKCQIDYIKYIN---ENKSTFKSSNKNDNSSQNAVSFISNILNFKIKLLNRGVEKCFYSKSSKSICSSDLGAAVVELIDFFKEILLKKFKEEIPKFALPLKPKTMLNSCIQIDNLENSVLAVKSPSVGMVQVSVDSHLHLSDKFTVPVESNRGRSCVSDFLTTPRPSTVKASENSDLSVVLKTAQSSTIMPVIETTEHNSVEIRGDISEVGTEILNDPSGDSCAGEVSSPFCKTRSQIKFKDRVKETERVPMPQSLSATLIDKYGPHDKSKWFTDLDISSYLEWKINDDKHFALNAGIVDAIASKLDDYKPPLLERLVKCDTILCPLNIKNQHWVLFVYIKSSSESFVMD 568          
BLAST of SMED30032843 vs. Planmine SMEST
Match: SMESG000062936.1 (SMESG000062936.1)

HSP 1 Score: 490.345 bits (1261), Expect = 6.694e-157
Identity = 239/246 (97.15%), Postives = 244/246 (99.19%), Query Frame = -3
Query:   90 MLNSCIQVDNLENSVLAVKSPSVGMVQMSVDSHLHLSDKFTVPVESNQEKSCISDFLTTTRSSTVKASENSDLSVVLKTAQSSTIMPVIETTEHNSVEIKSDISEVGTEILNDPSGDSCAGEVSSPFCKTRSQIKFKDRVKETERVPMPQSLSATLIDKYGPHDKSKWFTDLDISSYLEWKINDDKHFALNAGIVDAIASKLDDYKPPLLEKLVMCDSVLCPLNIKNQHWVLFVYIKSTSESFVME 827
            MLNSCIQVDNLENSVLAVKSPSVGMVQMSVDSHLHLSDKFTVPVESNQEKSCISDFLTT RSSTVKASENSDLSVVLKTAQSSTIMPVIETTEHNSVEIKSDISEVGTEILNDPSGDSCAGEVSSPFCKTRSQIKFKDRVKETERVPMPQSLSATLIDKYGPHDKSKWFTDLDISSYLEWKINDDKHFALNAGIVDAIASKLDDYKPPLLE+LV CD++LCPLNIKNQHWVLFVYIKS+SESFVM+
Sbjct:    1 MLNSCIQVDNLENSVLAVKSPSVGMVQMSVDSHLHLSDKFTVPVESNQEKSCISDFLTTPRSSTVKASENSDLSVVLKTAQSSTIMPVIETTEHNSVEIKSDISEVGTEILNDPSGDSCAGEVSSPFCKTRSQIKFKDRVKETERVPMPQSLSATLIDKYGPHDKSKWFTDLDISSYLEWKINDDKHFALNAGIVDAIASKLDDYKPPLLERLVKCDTILCPLNIKNQHWVLFVYIKSSSESFVMD 246          
BLAST of SMED30032843 vs. Planmine SMEST
Match: SMESG000035969.1 (SMESG000035969.1)

HSP 1 Score: 334.724 bits (857), Expect = 2.304e-107
Identity = 225/423 (53.19%), Postives = 287/423 (67.85%), Query Frame = -3
Query:   90 WGPKIIERISKNSYYYTSCSEMLLVLKKHKLQLEYDSLNNIIDPGVILKINSFYKFIEKNSDNIKCQIDYIKYIKYIXXXXXXXXXXXXXXXXXXNAVSFISNILNFKIKLLNRGVEKCFYXXXXXXXXXSDLGAAVVEXXXXXXXXXXXXXXXXIPKFALPLKPKTMLNSCIQVDNLENSVLAVKSPSVGMVQMS-VDSHLHLSDKFTVPVESN----QEKSCISD--FLTTTRSSTVKA-SENSDLSV-VLKTAQSSTIMPVIETTEHNSVEIKSDISEVG-TEILNDPSGDSCAGEVSSPFCKTRSQIKFKDRVKETERVPMPQSLSATLIDKYGPHDKSKWFTDLDISSYLEWKINDDKHFALNAGIVDAIASKLDDYKPPLLEKLVMCDSVLCPLNIKNQHWVLFVYIKSTSESFVME 1328
            WGPKII  I+  S+Y+ +CSEMLLVL+KHKLQLEYDSLNN+IDP VI KINS YKFIEKNSD+IKCQ +   Y   + E    FKS N +   + NAVSF  NIL FKI LLNRG+ KCFYSKS+K+ C  D G  + ELIDF    LLKKFK+EIPKFALPLKP+T+ ++  +V +    V +VK       +++ V +  ++S+     V+SN     E   +S+  F   T    ++     S LS  V++   +S  +PV+ + +   +E +  + +    EI+    G++   +++SPF KTRS IK K + KE       QSLS+ LIDKYGPHDK+KWFTDLDIS YLEWKIN DKHFALNAGIVDAIASK++DYKPPLLE+LV CD+VLCPLNIKN+HW LFVY KST+ES VM+
Sbjct:    2 WGPKIIRAINNQSHYHNACSEMLLVLRKHKLQLEYDSLNNVIDPAVISKINSLYKFIEKNSDDIKCQYN---YANNLLEQSKLFKSKNHDKELTSNAVSFTLNILRFKINLLNRGLAKCFYSKSTKTTCPYDQGIVITELIDFLTAFLLKKFKDEIPKFALPLKPETVKSA--KVGDRVPLVSSVKPKKTNPNKITLVPTGNYVSEPV---VKSNMNLYSETKVVSNKTFDARTHKHIIQILPPKSTLSPNVMEDINAS--LPVVNSEK--KIEKQCTVEQPAPAEIVRRTVGENSENDMNSPFYKTRSHIKAKGKPKECPS--DSQSLSSVLIDKYGPHDKAKWFTDLDISCYLEWKINGDKHFALNAGIVDAIASKMEDYKPPLLERLVKCDTVLCPLNIKNKHWFLFVYEKSTAESLVMD 410          
BLAST of SMED30032843 vs. Planmine SMEST
Match: SMESG000062934.1 (SMESG000062934.1)

HSP 1 Score: 281.952 bits (720), Expect = 3.475e-86
Identity = 134/217 (61.75%), Postives = 166/217 (76.50%), Query Frame = -3
Query: 1119 SLPVLKDKLFIKTGENSDKSINKILLRNNIDNITFSDGLFYATNKVTEFDFSTGCSDILFNLGHVNFYKISKSNKDFQEILKISNINEKIINMIFLLNCLKLENKIAQNSKLPYHRFAYNYILNCGVLHSVLSVDELANYRLEDFQTWGPKIIERISKNSYYYTSCSEMLLVLKKHKLQLEYDSLNNIIDPGVILKINSFYKFIEKNSDNIKCQIDY 1769
             +P L +KL  + G+   KS N IL R  + +++FSDG FY     T FD S+G  DILFNLGHVNF K+SKSN + +E L+I N  EK+I +IFLLNCLK+E KI++ SK+ Y+ FAYNYILNCG+LHSV  VDEL N+R+E+F+ WGPKII  I+  S+Y+ +CSEMLLVL+KHKLQLEYDSLNN+IDP VI KINS YKFIEKNSD+IKCQ  Y
Sbjct:    3 GIPQLHNKLMSEDGDRLHKSANGILKRKGLSHVSFSDGSFYTAKSNTAFDLSSGGPDILFNLGHVNFRKLSKSNDELRETLQIVNPKEKLIKLIFLLNCLKIEGKISKTSKISYNNFAYNYILNCGILHSVAPVDELLNFRIENFEMWGPKIIRAINNQSHYHNACSEMLLVLRKHKLQLEYDSLNNVIDPAVISKINSLYKFIEKNSDDIKCQYHY 219          

HSP 2 Score: 214.157 bits (544), Expect = 6.421e-61
Identity = 129/271 (47.60%), Postives = 173/271 (63.84%), Query Frame = -3
Query:   90 PKFALPLKPKTMLNSCIQVDNLENSVLAVKSPSVGMVQMSVDSHLHLSDKFTVPV-ESNQEKSCISDFLTTTRSSTVK---ASENSDLSVVL--KTAQSSTIM-------PVIETTEHNSVEIKSDISEVG-TEILNDPSGDSCAGEVSSPFCKTRSQIKFKDRVKETERVPMPQSLSATLIDKYGPHDKSKWFTDLDISSYLEWKINDDKHFALNAGIVDAIASKLDDYKPPLLEKLVMCDSVLCPLNIKNQHWVLFVYIKSTSESFVME 860
            PKFALPLKP+T+ ++  +V +    V +VK       ++++   +   D  + PV ESN       +F + T+  + K   A  +  +  +L  K+  S  +M       PV+ + +   +E +  + +    EI+    G++   +V+SPF KTRS IK K + KE       QSLS+ LIDKYGPHDK+KWFTDLDIS YLEWKIN DKHFALNAGIVDAIASK++DYKPPLLE+LV CD+VLCPLNI N+HWVLFVY KST+ESFVM+
Sbjct:  238 PKFALPLKPETVKSA--KVGDRVTLVSSVKPKKTNPNKITL---VPTGDYVSEPVVESNM------NFYSETKVVSYKTFDARTHKHIIQILPPKSTLSPNVMEDINASLPVVNSEKKEKIEKQCTVEQPAPAEIVRRTVGENSENDVNSPFYKTRSHIKAKGKPKECPS--DSQSLSSVLIDKYGPHDKAKWFTDLDISCYLEWKINGDKHFALNAGIVDAIASKMEDYKPPLLERLVKCDTVLCPLNINNKHWVLFVYEKSTAESFVMD 495          
BLAST of SMED30032843 vs. Planmine SMEST
Match: SMESG000047025.1 (SMESG000047025.1)

HSP 1 Score: 251.521 bits (641), Expect = 1.448e-73
Identity = 158/198 (79.80%), Postives = 171/198 (86.36%), Query Frame = -3
Query:  447 AVSFISNILNFKIKLLNRGVEKCFYXXXXXXXXXSDLGAAVVEXXXXXXXXXXXXXXXXIPKFALPLKPKTMLNSCIQVDNLENSVLAVKSPSVGMVQMSVDSHLHLSDKFTVPVESNQEKSCISDFLTTTRSSTVKASENSDLSVVLKTAQSSTIMPVIETTEHNSVEIKSDISEVGTEILNDPSGDSCAGEVSSPF 1040
            AVSFISNILNFKI+LLNRG EKC YSKSSKS CSSD G +VVELIDFFKEIL KK KEEI KFA+PLKPKTMLNSCIQ DNLENSVLAVK P+VGMVQMSVD H   SDKFTVPVESN+EKS IS FL T RSS+VKASE SDLSVVLKTAQS++IMPVIETTEHNSVEIK DIS VGT+ LN P+ D+C  E++SP 
Sbjct:  498 AVSFISNILNFKIRLLNRGGEKCLYSKSSKSTCSSDFGVSVVELIDFFKEILFKKLKEEILKFAMPLKPKTMLNSCIQDDNLENSVLAVKPPTVGMVQMSVDLHYFCSDKFTVPVESNREKSGISTFLMTPRSSSVKASEISDLSVVLKTAQSTSIMPVIETTEHNSVEIKGDISVVGTKTLNGPNSDNCRNELNSPL 695          
The following BLAST results are available for this feature:
BLAST of SMED30032843 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032843 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032843 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032843 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032843 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032843 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032843 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032843 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032843 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032843 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032843 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032843 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032843 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032843 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000024319.10.000e+096.32SMESG000024319.1[more]
SMESG000062936.16.694e-15797.15SMESG000062936.1[more]
SMESG000035969.12.304e-10753.19SMESG000035969.1[more]
SMESG000062934.13.475e-8661.75SMESG000062934.1[more]
SMESG000047025.11.448e-7379.80SMESG000047025.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30032843 ID=SMED30032843|Name=SMED30032843|organism=Schmidtea mediterranea sexual|type=transcript|length=1939bp
TTCTGGTTATTTCTCCTCTCATTCCTGTTATTTCTCCGATCAGCTGGTGT
AATAAATTATGTATTTGATTGGTTTGCTTTCGTGCAATGCTCCATCACAA
AAGACTCAGAGGTGGATTTTATATAAACAAATAAGACCCAGTGTTGGTTT
TTTATGTTGAGAGGACAAAGTACAGAGTCACACATAACAAGCTTTTCAAG
AAGAGGTGGCTTATAGTCATCCAACTTACTGGCAATTGCATCAACAATTC
CAGCATTGAGTGCAAAATGCTTATCGTCGTTTATCTTCCATTCAAGATAA
CTACTAATGTCAAGGTCCGTGAACCATTTGCTTTTATCGTGTGGGCCGTA
TTTGTCGATTAAGGTAGCCGACAACGACTGAGGCATGGGCACACGCTCAG
TTTCCTTAACCCTATCTTTAAATTTTATTTGGCTTCTAGTCTTGCAAAAC
GGAGAACTCACTTCGCCTGCACAGCTGTCGCCACTAGGGTCATTTAAAAT
TTCAGTACCTACCTCACTAATATCACTTTTTATTTCAACTGAGTTATGTT
CAGTGGTTTCTATGACTGGCATAATCGTAGACGATTGAGCAGTTTTCAAA
ACGACAGAAAGATCAGAGTTCTCTGAGGCTTTAACCGTAGACGATCGAGT
AGTTGTCAAAAAGTCAGAAATACAAGACTTCTCTTGATTGGATTCTACAG
GAACTGTGAATTTATCACTCAGATGCAAATGTGAATCAACTGACATTTGT
ACCATCCCAACGCTTGGAGATTTAACAGCCAAGACAGAGTTCTCTAGATT
ATCAACTTGAATACAGCTATTCAACATTGTTTTCGGTTTTAGAGGCAGTG
CAAATTTAGGTATTTCTTCTTTAAATTTTTTCAAGAGAATCTCTTTAAAA
AAGTCGATCAGTTCAACCACAGCAGCACCCAAGTCACTAGAACAAATTGA
TTTACTCGATTTTGAGTAGAAGCATTTTTCAACCCCTCTATTCAGTAGTT
TAATCTTAAAATTCAGAATATTCGAAATAAAAGAGACAGCATTTTGAGAC
GAGTTATCGTTTTTATTACTAGACTTGAAAGTAGATTTATTTTCATTAAT
ATATTTAATATATTTAATATAGTCTATTTGACATTTTATATTGTCACTGT
TTTTTTCTATGAATTTATAAAATGAATTTATTTTTAATATTACCCCAGGG
TCAATTATATTATTTAAAGAATCATATTCCAATTGAAGTTTGTGCTTCTT
AAGTACAAGAAGCATTTCACTACAACTAGTGTAATAGTAAGAATTCTTGC
TAATCCGTTCAATAATTTTAGGTCCCCACGTTTGGAAATCCTCAAGACGA
TAATTTGCTAATTCATCAACAGACAAGACTGAGTGAAGTACACCACAATT
CAGAATGTAATTATAGGCAAATCTATGATAAGGCAGCTTTGAATTTTGTG
CGATTTTATTTTCCAATTTCAGACAATTTAATAAAAATATCATATTAATA
ATCTTCTCATTGATATTTGAAATTTTTAAAATTTCTTGGAAGTCTTTATT
TGATTTAGAAATTTTATAAAAATTGACATGGCCAAGATTAAAAAGAATAT
CAGAGCAACCAGTCGAAAAGTCAAATTCAGTCACTTTATTTGTAGCATAA
AAGAGACCATCAGAAAACGTGATATTATCTATATTATTACGCAATAATAT
TTTATTTATGGACTTGTCTGAATTTTCACCGGTCTTTATGAACAATTTAT
CTTTCAATACTGGTAAACTATTCACTAAATTCTCTCGTGCAGTATTGGTC
ATTAAATTGGTCACCACATCAGTTTTAGTTTGTTTATTTGAAAAAAGGTT
TCTTACAAAATTGGAACGGAAATTATTATTAGGTTTTCATTTCTGACAAC
ATTAATGAGTGTTCCTTGCTACTTGATCTACTTACTCTT
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protein sequence of SMED30032843-orf-1

>SMED30032843-orf-1 ID=SMED30032843-orf-1|Name=SMED30032843-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=582bp
MTNTARENLVNSLPVLKDKLFIKTGENSDKSINKILLRNNIDNITFSDGL
FYATNKVTEFDFSTGCSDILFNLGHVNFYKISKSNKDFQEILKISNINEK
IINMIFLLNCLKLENKIAQNSKLPYHRFAYNYILNCGVLHSVLSVDELAN
YRLEDFQTWGPKIIERISKNSYYYTSCSEMLLVLKKHKLQLEYDSLNNII
DPGVILKINSFYKFIEKNSDNIKCQIDYIKYIKYINENKSTFKSSNKNDN
SSQNAVSFISNILNFKIKLLNRGVEKCFYSKSSKSICSSDLGAAVVELID
FFKEILLKKFKEEIPKFALPLKPKTMLNSCIQVDNLENSVLAVKSPSVGM
VQMSVDSHLHLSDKFTVPVESNQEKSCISDFLTTTRSSTVKASENSDLSV
VLKTAQSSTIMPVIETTEHNSVEIKSDISEVGTEILNDPSGDSCAGEVSS
PFCKTRSQIKFKDRVKETERVPMPQSLSATLIDKYGPHDKSKWFTDLDIS
SYLEWKINDDKHFALNAGIVDAIASKLDDYKPPLLEKLVMCDSVLCPLNI
KNQHWVLFVYIKSTSESFVMEHCTKANQSNT*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000099neuron
PLANA:0000101muscle cell
PLANA:0000103central nervous system
PLANA:0000142posterior region of the whole animal
PLANA:0000418head
PLANA:0002075pigment cell
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..21
score: 0.649