FMRFamide-activated amiloride-sensitive sodium channel

Overview
NameFMRFamide-activated amiloride-sensitive sodium channel
Smed IDSMED30032830
Length (bp)1939
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of FMRFamide-activated amiloride-sensitive sodium channel (SMED30032830) t-SNE clustered cells

Violin plots show distribution of expression levels for FMRFamide-activated amiloride-sensitive sodium channel (SMED30032830) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of FMRFamide-activated amiloride-sensitive sodium channel (SMED30032830) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for FMRFamide-activated amiloride-sensitive sodium channel (SMED30032830) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30032830

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 3

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
nervous systemSMED30032830h1SMcG0008431 dd_Smed_v4_25838_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30032830h1SMcG0008431 dd_Smed_v4_25838_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30032830h1SMcG0008431 dd_Smed_v4_25838_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. UniProt/SwissProt
Match: sp|Q25011|FANA_CORAP (FMRFamide-activated amiloride-sensitive sodium channel OS=Cornu aspersum OX=6535 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.290e-11
Identity = 105/515 (20.39%), Postives = 208/515 (40.39%), Query Frame = 3
Query:  288 LIIKFCSNSSIRGLSRISANQNFSLKSIWLIFXXXXXXXXXXXXXXXXFEYLEYNTLINSRENHEMITIFPGITLCNHYPFHMDANKLWQSAEVLSPLKFNSIIRQMVK-DNYLKNFSLAKLLFTSDTITSYFETIGSFKAQMISHN-SSQIMYCLLLLKNSKIRVGHNNE-CGII-IKTVPNSQFLTC------QNIRIHSNYSTNAVALGLIIHMDDLSKHLNTLELGLVQDVFKQAHGLRILLHEPDTLADFSLDGFNVEPGKFTDVKFSAVKWIKINTPKEPCWSQEIIXXXXXXXXXXXXYTYDTCKNEEIGKLIYKQCNCYSSKYPLPFDIDENNVTFCSKINLSDSLEVIKRLSCLDQLESLE-----PIKQIMSENK----------------CIRRCTYMTYECHLSTAHWALSNWKL----------------YWLMTMNDALNAL--ESNKHESINSA--KSIFQQYISQSETNLSKNVTNLIKTS--------DDLFLVINRQ 1655
            +I +  S S+  GL++I  +++   K IW + +++     T+    L  +YL++  +  S     M   +P +++CN  P          S   +  + FN+  + ++    +++ F   +  F  ++I +++E +G   A+ +SHN    +M+C             N E C +    T  +  +  C      Q +++H+    N ++L   +  DD      T  +    +    + G+R+++H P ++      G ++ PG  + V   A+   ++  P   C +  +           + YT+  C      +LI ++C C SS  P   ++   N TFC  I   D  E+ +  S  D  +S E     P   +  E +                C + C+  +Y   +S ++W L  ++L                +++ T  + L  L   S KH + N +    I  +  S SE  ++K  ++LI+ +        +DL +V  RQ
Sbjct:   42 IIAELGSESNAHGLAKIVTSRDTKRKVIWALLVIAGFTAATLQLSLLVRKYLQFQVVELSEIKDSMPVQYPSVSICNIEPI---------SLRTIRRMYFNNESQNLITWLRFIQKFRFEQDSFM-NSIRAFYENLGQ-DAKKLSHNLEDMLMHCRF-----------NRELCHVSNFSTFFDGNYFNCFTFNSGQRLQMHATGPENGLSLIFSVEKDDPLP--GTYGVYNFDNNILHSAGVRVVVHAPGSMPSPVDHGIDIPPGYSSSVGLKAILHTRLPYPYGNCTNDML------NGIKQYKYTFFACLQLCKQRLIIQRCGCKSSALP---EVPSYNATFCGVIK--DWQEINRNHSNEDHNQSEEDRAFIPTPYLACEEREQKNLNNDRTYELSCGCFQPCSETSYLKSVSLSYWPLEFYQLSAVERFFKQERQAGQNHFMKTAYEYLEKLAHPSQKHLARNDSHMDDILSKSYSLSEKEMAKEASDLIRQNMLRLNIYLEDLSVVEYRQ 521          
BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. TrEMBL
Match: A0A0R3SH18 (Uncharacterized protein OS=Hymenolepis diminuta OX=6216 GN=HDID_LOCUS4228 PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 5.106e-51
Identity = 130/449 (28.95%), Postives = 228/449 (50.78%), Query Frame = 3
Query:  273 QKRESLIIKFCSNSSIRGLSRISANQNFSLKSIWLIFXXXXXXXXXXXXXXXXFEYLEYNTLINSRENHEMITIFPGITLCNHYPFHMDANKLWQSAEVLSPLKFNSIIRQMVKDNYLKN-FSLAKLLFTSDTITSYFETIGSFKAQMISHNSSQIMYCLLLLKNSKIRVGHNNEC----GIIIKTVPNSQFLTCQNIRIHSNYSTNAVA-LGLIIHMDDLSKHLNTLELGLVQDVFKQAHGLRILLHEPDTLADFSLDGFNVEPGKFTDVKFSAVKWIKINTPKEPCWSQEIIXXXXXXXXXXXXYTYDTCKNEEIGKLIYKQCNCYSSKYPLP-FDIDENNVTFCSKI-NLSDSLEVIKRLSCLDQLESLEPIKQIMSENKCIRRCTYMTYECHLSTAHWALSNWKLYWLMTMNDALNA----LESNKHESINS--AKSIFQQYISQ 1577
            Q+  S  + FC  +++RGL ++     F L+ IW IF++SM  +L +  L L  ++L Y+  +++R   +  + FP +T+C+HYPF + A KLWQ  +VLSP +FN  +R +   + L N  + A+ +   D+++ Y++ +   +A+ + H+    + C+ +   + I     ++C    G  +K   + Q+L C      S+      + L LI+ M    +     E   + D+F+QA GLR+++HEP T  D    G + EPGK  ++ +  VKW K+NTP  PC+       + K  +  ++YT++ C      K I  +C CY    P P F  +E    +C K+    D+ E ++RL+C++   ++  +KQ      C  +C Y TY+  +S   W    W+LYWL     A+       E+N + SI       ++Q+Y+S+
Sbjct:   16 QRLRSAFMLFCRCTTVRGLGKLWQGPKF-LRIIWAIFVVSMMSVLIISVLFLIIDFLNYDVGVHTRLLLDEPSPFPSLTICHHYPFSLQARKLWQEKKVLSPGQFNRYMRNLTWTSLLNNDVNAAEAITFYDSLSVYYQNLKPEEARALGHDHKIFLNCMRVASQTNII---EDDCRVLSGYKVKQFSHHQYLNCHTFEPESHLEALRTSFLSLIVSMGP-KESFGPDEQAFLPDIFEQAKGLRVVVHEPGTYPDLEKFGLHAEPGKLNEIGYEPVKWTKMNTPTRPCFH---TGPQYKDLDEVYNYTHEQCILLHQQKEIIDECGCYYVMNPRPSFPTEEK--PYCGKMWPRMDTEEFVRRLNCIEAKLNIS-VKQKYDGTVCQPQCEYYTYDSTISITKWRAHPWQLYWLRVQTQAVRLAKAFAENNTNASITESLGYKMWQRYLSE 453          
BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. TrEMBL
Match: A0A1I8G5D0 (G_PROTEIN_RECEP_F1_2 domain-containing protein OS=Macrostomum lignano OX=282301 PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 3.631e-50
Identity = 135/517 (26.11%), Postives = 260/517 (50.29%), Query Frame = 3
Query:  225 QIVKYQNNTTVHAKKLQKRESLIIK-FCSNSSIRGLSRISANQNFSLKSIWLIFXXXXXXXXXXXXXXXXFEYLEYNTLINSRENHEMITIFPGITLCNHYPFHMDANKLWQSAE-VLSPLKFNSIIRQMVKDNYLK-NFSLAKLLFTSDTITSYFETIGSFKAQMISHNSSQ-IMYCLLLLKNSKIRVGHNNECGIIIKTVPNSQFLTCQNIR-IHSNYSTNAVALGLIIHMDDLSKHLNTLELGLVQDVFKQAHGLRILLHEPDTLADFSLDGFNVEPGKFTDVKFSAVKWIKI-NTPKEPC---WSQEIIXXXXXXXXXXXXYTYDTCKNEEIGKLIYKQCNCYSSKYPLPFDIDENNVTFCSKINLSDSLEVIKRLSCLDQL-ESLEPIKQ---------IMSENKCIRRCTYMTYECHLSTAHWALSNWKLYWLMTMNDALNALE--SNKHESINSAKSIFQQYISQSETNL--------SKNVTNLIKTSDDL--FLVINRQSFMTLEKVE 1682
            ++ +   ++++ AK + +  + I + FCS+SS+RG+ +I       L+ +WL+F+L+M +LL   S  +   Y EY+  + +       + FP IT+C+HYPF   A ++WQ  +  L+P  FN  +RQ+ +      N  LA  L   D + +Y++ +       + H+  + +++C++ + N  + VG  +EC +  + V + ++  C  ++   ++ S    A+ LI+++   S+  +  E   V DVF QA+GLR+LLHE +        G ++EPGK  ++ F  V W +  ++P + C   W   I     +   N + Y+Y  CK   + KL   +C C  S++P P  +  N + +C     S+   +  RL CL+++ E    + Q         +  +++C +RCT  +Y+  LS   W  S+++L+W++  +D+   L   +N+ E  +  ++I     + + T L         +    L  +++D   ++V+ R+SF TL++ E
Sbjct: 1300 ELTRLNADSSLPAKPVPQPSANIRQLFCSSSSLRGVPKICRADTTFLRILWLVFVLAMFILLVYSSTRVLMNYREYDVSVQTSVIGNDPSDFPAITICSHYPFSPRAARMWQQCDGQLAPATFNRRLRQLTRQLLFSGNLRLANTLLFYDKVNTYYQNLDPNVTVSMGHSVDEFLLHCMIAIGNY-VMVGKASECQLTFQLVSHPKYFNCYTVKPTQADKSQAMSAVYLIVNLGSNSRQ-HPWEQAFVMDVFDQAYGLRLLLHEANLYPGIENAGVHIEPGKMVEIAFDTVLWKETQDSPMDRCHDGWRPAI-----EDLQNRYRYSYQACKEAHMNKLFIAKCQCLLSRFPRPAGLPSNQIPYCGDFRTSNISIIESRLRCLEEIGEHQSKMPQPAAAAAAAAVADDSQCRKRCTRYSYDQELSITRWRASSYQLHWMLHQSDSWKRLREVNNESEKRHLLRNILDYLGADNLTRLPVSYQQQERQQQATLTDSAEDTYAYVVVRRKSFDTLKREE 1809          
BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. TrEMBL
Match: A0A068XZW8 (FMRFamide activated amiloride sensitive sodium OS=Echinococcus multilocularis OX=6211 GN=EmuJ_000526700 PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 9.316e-50
Identity = 125/433 (28.87%), Postives = 218/433 (50.35%), Query Frame = 3
Query:  285 SLIIKFCSNSSIRGLSRISANQNFSLKSIWLIFXXXXXXXXXXXXXXXXFEYLEYNTLINSRENHEMITIFPGITLCNHYPFHMDANKLWQSAEVLSPLKFNSIIRQMVKDNYLKN-FSLAKLLFTSDTITSYFETIGSFKAQMISHNSSQIMYCLLLLKNSKIRVGHNNEC----GIIIKTVPNSQFLTCQNIRIHSNYSTNAVA-LGLIIHMDDLSKHLNTLELGLVQDVFKQAHGLRILLHEPDTLADFSLDGFNVEPGKFTDVKFSAVKWIKINTPKEPCWSQEIIXXXXXXXXXXXXYTYDTCKNEEIGKLIYKQCNCYSSKYPLPFDIDENNVTFCSKI--NLSDSLEVIKRLSCL-DQLESLEPIKQIMSENKCIRRCTYMTYECHLSTAHWALSNWKLYWLMTMNDALNALESNKHESINSAKSI 1556
            +  + FC  +++RGL ++     F L+ IW IF++SM  +L +  + L  ++L Y+  +++R   +  + FP +T+C+HYPF M A KLWQ  +VLSP +FN  +R +   N L N  S A+ +   D+++ Y++ +   +A+ + H+    + C+ +   + I     ++C    G +++   + Q+L C              + L L++ M    +  +  E   + D+F+QA GLR+++HEP T  D    G + EPGK  ++ +  V+W K+NTP  PC+ +     K       ++YT++ C      K I + C CY    P P  +  N   +C ++  NL D  + + RL+CL D+L+    +K+      C+ RC Y TY+  +S   W    W+LYWL     A+  ++       NS K I
Sbjct:   20 TAFVLFCRCTTVRGLGKLWQGPTF-LRIIWAIFVVSMMCVLLISVVLLILDFLAYDVGVHTRLLLDDPSPFPALTVCHHYPFSMQARKLWQEKKVLSPGQFNRYMRNLTWTNLLNNDVSAAEAITFYDSLSVYYQNLSPEEAKALGHDHRIFLNCMRVSSQTSI---FEDDCRLLKGYLVRQFSHHQYLNCHTFEPADQKEALETSFLSLMVSMGP-KESSDPDEQAFLPDIFEQAKGLRVVVHEPGTYPDLEKFGLHAEPGKLNEIGYEPVRWTKMNTPTRPCFHK---AEKYHDLEGVYNYTHEQCLLLYQQKEIIEDCGCYYVMNPRP-SLPTNEKPYCGRMWPNL-DIEKFVNRLACLRDKLDIA--VKRKYDGRVCLPRCEYYTYDSAISITKWRAHMWQLYWLRVQTQAVRLVQEFTQS--NSGKDI 438          
BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. TrEMBL
Match: U6JC63 (FMRFamide activated amiloride sensitive sodium OS=Echinococcus granulosus OX=6210 GN=EGR_03902 PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.184e-49
Identity = 125/433 (28.87%), Postives = 218/433 (50.35%), Query Frame = 3
Query:  285 SLIIKFCSNSSIRGLSRISANQNFSLKSIWLIFXXXXXXXXXXXXXXXXFEYLEYNTLINSRENHEMITIFPGITLCNHYPFHMDANKLWQSAEVLSPLKFNSIIRQMVKDNYLKN-FSLAKLLFTSDTITSYFETIGSFKAQMISHNSSQIMYCLLLLKNSKIRVGHNNEC----GIIIKTVPNSQFLTCQNIRIHSNYSTNAVA-LGLIIHMDDLSKHLNTLELGLVQDVFKQAHGLRILLHEPDTLADFSLDGFNVEPGKFTDVKFSAVKWIKINTPKEPCWSQEIIXXXXXXXXXXXXYTYDTCKNEEIGKLIYKQCNCYSSKYPLPFDIDENNVTFCSKI--NLSDSLEVIKRLSCL-DQLESLEPIKQIMSENKCIRRCTYMTYECHLSTAHWALSNWKLYWLMTMNDALNALESNKHESINSAKSI 1556
            +  + FC  +++RGL ++     F L+ IW IF++SM  +L +  + L  ++L Y+  +++R   +  + FP +T+C+HYPF M A KLWQ  +VLSP +FN  +R +   N L N  S A+ +   D+++ Y++ +   +A+ + H+    + C+ +   + I     ++C    G +++   + Q+L C              + L L++ M    +  +  E   + D+F+QA GLR+++HEP T  D    G + EPGK  ++ +  V+W K+NTP  PC+ +     K       ++YT++ C      K I + C CY    P P  +  N   +C ++  NL D  + + RL+CL D+L+    +K+      C+ RC Y TY+  +S   W    W+LYWL     A+  ++       NS K I
Sbjct:   20 TAFVLFCRCTTVRGLGKLWQGPTF-LRIIWAIFVVSMMCVLLISVVLLILDFLAYDVGVHTRLLLDDPSPFPALTVCHHYPFSMRARKLWQEKKVLSPGQFNRYMRNLTWTNLLNNDVSAAEAITFYDSLSVYYQNLSPEEAKALGHDHRIFLNCMRVSSQTSI---FEDDCRLLKGYLVRQFSHHQYLNCHTFEPADQKEALETSFLSLMVSMGP-KESSDPDEQAFLPDIFEQAKGLRVVVHEPGTYPDLEKFGLHAEPGKLNEIGYEPVRWTKMNTPTRPCFYK---AEKYHDLEGVYNYTHEQCLLLYQQKEIIEDCGCYYVMNPRP-SLPTNEKPYCGRMWPNL-DIEKFVNRLACLRDKLDIA--VKRKYDGRVCLPRCEYYTYDSAISITKWRAHMWQLYWLRVQTQAVRLVQEFTQS--NSGKDI 438          
BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. TrEMBL
Match: A0A0R3WN07 (Uncharacterized protein OS=Hydatigena taeniaeformis OX=6205 GN=TTAC_LOCUS2132 PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 3.970e-49
Identity = 130/452 (28.76%), Postives = 227/452 (50.22%), Query Frame = 3
Query:  285 SLIIKFCSNSSIRGLSRISANQNFSLKSIWLIFXXXXXXXXXXXXXXXXFEYLEYNTLINSRENHEMITIFPGITLCNHYPFHMDANKLWQSAEVLSPLKFNSIIRQMVKDNYLKN-FSLAKLLFTSDTITSYFETIGSFKAQMISHNSSQIMYCLLLLKNSKIRVGHNNEC----GIIIKTVPNSQFLTCQNIR-IHSNYSTNAVALGLIIHMDDLSKHLNTLELGLVQDVFKQAHGLRILLHEPDTLADFSLDGFNVEPGKFTDVKFSAVKWIKINTPKEPCWSQEIIXXXXXXXXXXXXYTYDTCKNEEIGKLIYKQCNCYSSKYPLPFDIDENNVTFCSKI--NLSDSLEVIKRLSCL-DQLESLEPIKQIMSENKCIRRCTYMTYECHLSTAHWALSNWKLYWLMTMNDALNA----LESNKHESINS--AKSIFQQYISQSETNLS 1595
            +  + FC  +++RGL ++     F L+ IW IF++SM  +L +  + L  ++L Y+  +++R   +  + FP +T+C+HYPF M A KLWQ  +VLSP +FN  +R +   N L N  S A+ +   D+++ Y++ +   +A+ + H+    + C+ +   + I     ++C    G  ++   + Q+L C     +    +     L LI+ M    +  +  E   + D+F+QA GLR+++HEP T  D    G + EPGK  ++ +  V+W K+NTP  PC+ +     K    +  ++YT++ C      K I + C CY    P P     N   +C ++  NL D  + + RL CL D+L     +K+    + C+ RC Y TY+  +S   W    W+LYWL     A+      ++ N   +I       ++++Y+  SE NLS
Sbjct:   20 TAFVLFCRCTTVRGLGKLWQGPTF-LRIIWAIFVVSMMCVLLISVVLLILDFLAYDVGVHTRLLLDDPSPFPALTVCHHYPFSMRARKLWQERKVLSPGRFNRYMRNLTWTNLLNNDVSAAEAITFYDSLSVYYQNLSPEEAKSLGHDHRIFLNCMRVSSQTSI---FEDDCRLLKGYRVRQFSHHQYLNCHTFEPVDQKEALETSFLSLIVSMGP-KESSDPDEQAFLPDIFEQAKGLRVVVHEPGTYPDLEKFGLHAEPGKLNEIGYQPVRWTKMNTPTRPCFHE---AEKYYDLDGIYNYTHEQCLLLYQQKEIIEDCGCYYVMNPRP-SFPTNEKPYCGRMWPNL-DIEKFVNRLECLRDKLNIA--VKRKYDGSVCLPRCEYYTYDSAISITKWRAQMWQLYWLRVQTQAVRLTQEFMQHNSSRNITESLGYRMWKRYL--SERNLS 457          
BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. Planmine SMEST
Match: SMESG000004049.1 (SMESG000004049.1)

HSP 1 Score: 1033.09 bits (2670), Expect = 0.000e+0
Identity = 558/560 (99.64%), Postives = 559/560 (99.82%), Query Frame = 3
Query:  162 MTKPEKIYVRNGIIAFHTKGKQIVKYQNNTTVHAKKLQKRESLIIKFCSNSSIRGLSRISANQNFSLKSIWLIFXXXXXXXXXXXXXXXXFEYLEYNTLINSRENHEMITIFPGITLCNHYPFHMDANKLWQSAEVLSPLKFNSIIRQMVKDNYLKNFSLAKLLFTSDTITSYFETIGSFKAQMISHNSSQIMYCLLLLKNSKIRVGHNNECGIIIKTVPNSQFLTCQNIRIHSNYSTNAVALGLIIHMDDLSKHLNTLELGLVQDVFKQAHGLRILLHEPDTLADFSLDGFNVEPGKFTDVKFSAVKWIKINTPKEPCWSQEIIXXXXXXXXXXXXYTYDTCKNEEIGKLIYKQCNCYSSKYPLPFDIDENNVTFCSKINLSDSLEVIKRLSCLDQLESLEPIKQIMSENKCIRRCTYMTYECHLSTAHWALSNWKLYWLMTMNDALNALESNKHESINSAKSIFQQYISQSETNLSKNVTNLIKTSDDLFLVINRQSFMTLEKVEVFXXXXXXXXXXXXXXXXXXXXXXFTTIFEIAEFLITFFQGIQFRNIKNLRRS 1841
            MTKPEKIYVRNGIIAFHTKGKQIVKYQNNTTVHAKKLQKRESLIIKFCSNSSIRGLSRISANQNFSLKSIWLIFLLSMSVLLTVGSLSLTFEYLEYNTLINSRENHEMITIFPGITLCNHYPFHMDANKLWQSAEVLSPLKFNSIIRQMVKDNYLKNFSLAKLLFTSDTITSYFETIGSFKAQMISHNSSQIMYCLLLLKNSKIRVGH+NECGIIIKTVPNSQFLTCQNIRIHSNYSTNAVALGLIIHMDDLSKHLNTLELGLVQDVFKQAHGLRILLHEPDTLADFSLDGFNVEPGKFTDVKFSAVKWIKINTPKEPCWSQEIIKSKDKKFNNNFSYTYDTCKNEEIGKLIYKQCNCYSSKYPLPFDIDENNVTFCSKINLSDSLEVIKRLSCLDQLESLEPIKQIMSENKCIRRCTYMTYECHLSTAHWALSNWKLYWLMTMNDALNALESN HESINSAKSIFQQYISQSETNLSKNVTNLIKTSDDLFLVINRQSFMTLEKVEVFSLTRSALLSRLGGLSSITLGITFTTIFEIAEFLITFFQGIQFRNIKNLRRS
Sbjct:    1 MTKPEKIYVRNGIIAFHTKGKQIVKYQNNTTVHAKKLQKRESLIIKFCSNSSIRGLSRISANQNFSLKSIWLIFLLSMSVLLTVGSLSLTFEYLEYNTLINSRENHEMITIFPGITLCNHYPFHMDANKLWQSAEVLSPLKFNSIIRQMVKDNYLKNFSLAKLLFTSDTITSYFETIGSFKAQMISHNSSQIMYCLLLLKNSKIRVGHHNECGIIIKTVPNSQFLTCQNIRIHSNYSTNAVALGLIIHMDDLSKHLNTLELGLVQDVFKQAHGLRILLHEPDTLADFSLDGFNVEPGKFTDVKFSAVKWIKINTPKEPCWSQEIIKSKDKKFNNNFSYTYDTCKNEEIGKLIYKQCNCYSSKYPLPFDIDENNVTFCSKINLSDSLEVIKRLSCLDQLESLEPIKQIMSENKCIRRCTYMTYECHLSTAHWALSNWKLYWLMTMNDALNALESNNHESINSAKSIFQQYISQSETNLSKNVTNLIKTSDDLFLVINRQSFMTLEKVEVFSLTRSALLSRLGGLSSITLGITFTTIFEIAEFLITFFQGIQFRNIKNLRRS 560          
BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. Planmine SMEST
Match: SMESG000060702.1 (SMESG000060702.1)

HSP 1 Score: 202.601 bits (514), Expect = 1.076e-56
Identity = 145/488 (29.71%), Postives = 252/488 (51.64%), Query Frame = 3
Query:  264 KKLQKRESLIIKFCSNSSIRGLSRISANQNFSLKSIWLIFXXXXXXXXXXXXXXXXFEYLEYNTLINSRENHEMITIFPGITLCNHYPFHMDANKLWQSAEVLSPLKFNSIIRQMVKDNYLKNFSLAKLLFTSDTITSYFETIGSFKAQMISHNSSQIMYCLLLLKNSKIRVGHNNEC----GIIIKTVPNSQFLTCQNIRIHS-NYSTNAVALGLIIHMDDLSKHLNTLELGLVQDVFKQAHGLRILLHEPDTLADFSLDGFNVEPGKFTDVKFSAVKWIKINTPKEPCW----SQEIIXXXXXXXXXXXXYTYDTCKNEEIGKLIYKQCNCYSSKYPLPFDIDENNVTFCSKINLSDSL-EVIKRLSCLDQLESLEPIKQIMSENKCIRRCTYMTYECHLSTAHWALSNWKLYWLMTMNDALNALESN-KHESINSAKSIFQQYISQ---SETNLSKNVTNLIKTSDDL-FLVINRQSFMTLEKVE 1682
            KKL K ES++  FC   +IRG++++++  +F L+ +W +F+L M+++L   +  L  +Y +Y+  ++ R+  +  T FP IT+C+H+PF  DA KLW S +VLSP  FN  +RQ       ++   A   +  D+I  Y++ +   ++  + H  + ++YCL   + +  ++   N+C      +IK + + Q   C      + + S +     LI+ +          E   + DVF+QA GLR ++HEP T+ D   +G +VEPGK  ++ F  V  +K++TPK PC     S ++I       ++ ++YT+    N E   LI K C C    YP P       V +C K+     L E   R++C+     +   ++I  E KC  RC+Y TYE  +S   W    W+L+WL   ++A  AL +N   ES  +AK+ ++ Y+ +   S  N++ +  +L    DD  ++V+ ++S +  E+ E
Sbjct:   34 KKLVKDESILELFCRCMTIRGVNKMTSASSF-LRYLWSVFVLLMTIILVGATCLLILDYFKYDVTLHQRDLQKNST-FPAITICHHHPFSKDAYKLWDSKKVLSPSLFNLYMRQNALHYLNQDDKFANNFYYFDSIDIYYQNLLYNESIALGHKYTIVLYCL---RRNDYQIDFENDCQQFDSYVIKRLSHPQHFNCYTFEPRNISVSVSTRFFSLIVSLGRPEPDYANHEQAFLIDVFEQAKGLRAVVHEPGTIPDIEREGLHVEPGKLNEINFQPVLNLKLDTPKRPCIPDNESSKLI-----DLDSKYNYTFYEYINLEKQYLIVKHCKCMYILYPRPL-YPTKEVPYCGKLWPKIDLDEFTTRINCVSNYLKMSLTEEI--EKKCRPRCSYYTYEATVSITKWRAKQWQLHWLSLQSNAQKALNANISAESYQNAKNSWKSYLERRDLSNVNIADSRKSLNLDGDDFAYVVLKKKSSILKERSE 508          
BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. Planmine SMEST
Match: SMESG000039581.1 (SMESG000039581.1)

HSP 1 Score: 194.126 bits (492), Expect = 3.212e-53
Identity = 157/531 (29.57%), Postives = 267/531 (50.28%), Query Frame = 3
Query:  276 KRESLIIKFCSNSSIRGLSRISANQNFSLKSIWLIFXXXXXXXXXXXXXXXXFEYLEYNTLINSRENHEMITIFPGITLCNHYPFHMDANKLWQSAEVLSPLKFNSIIRQMVKDNYLKNFSL-AKLLFTSDTITSYFETIGSFKAQMISHNSSQIMYCLLLLKNSKIRVGHNNECGII----IKTVPNSQFLTCQNIRIHSNYSTNAVALGLIIHMDDLSKHLNTLELGLVQDVFKQAHGLRILLHEPDTLADFSLDGFNVEPGKFTDVKFSAVKWIKINTPKEPCWSQEIIXXXXXXXXXXXXYTYDTCKNEEIGKLIYKQCNC---YSSKYPLPFDIDENNVTFCSK-INLSDSLEVIKRLSCLDQLESLEPIKQIMSENKCIRRCTYMTYECHLSTAHWALSNWKLYWLMTMNDALNALESNKHESINSAKSI-FQQYISQSETNLSKNVTNLIKTSDD-----------LFLVINRQSFMTLEKVEVFXXXXXXXXXXXXXXXXXXXXXXFTTIFEIAEFLITFFQG 1805
            K +++ I FCS +S++G+++I+      L+ +WL F+++MS +L V S  L  +++ Y+  IN        T FP IT+C+H+PF M+A K W+  ++LSP  FN  +R +   N + N  + A+ +   D I+ Y++ IG   + +I H     + C+LL  N    + +   C  +    +K   + +   C       +  T    LG+I+ M     +  T E   + D F+QA GL++++HEP    D    G +VEPGK  ++ +  V+W   NTP +PC++ +I K +       ++YT D C + E  K I  +C+C   Y+ +  +P       + +C   +  SD  E+  R+ CL  ++     K+ +   KC +RCTYMTYE  +S   W  + W L+W+         L++N    IN+ +S  F+Q++         N TNL    +D            ++V+ R+S  ++ K E   ++   L+SR+GGL S T+GIT +   EI EFL  ++Q 
Sbjct:   74 KTKNVFILFCSTTSMKGMNKITRGPK-PLRFLWLSFVMTMSTVLIVSSCLLVRDFMLYDVNINIEVRLASQTPFPSITICHHHPFSMEAYKYWRENKILSPSTFNRKMRNLTHSNLMGNRVMEAEGISNYDVISVYYQNIGYNDSMLIGHQKDIFLSCMLLRNNM---ISYEENCSKLEEYEVKMFSHHEHFNCYTFEAKVDKIT---TLGIIVSMGPPPDYSAT-EQAFIVDTFRQAQGLKVIVHEPGVPPDIDNGGVHVEPGKLNEISYRPVEWKLENTPTKPCFN-DIKKERYNDLERFYNYTQDMCLSSEEQKRIIDECHCIFIYNPRLQIP----TKKLPYCGNFLEDSDLSELNHRIECLTNIQEDVNFKKKLESEKCFQRCTYMTYETSISITKWRATEWHLHWIRLQLLTFRQLKNNPQ--INATESTYFKQWLKYW------NATNLTVIDEDRKERFLANDNFAYIVLRRESDNSVRKYERLVISPYVLVSRIGGLCSFTVGITASFFVEILEFLYLYYQS 583          
BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. Planmine SMEST
Match: SMESG000043119.1 (SMESG000043119.1)

HSP 1 Score: 184.882 bits (468), Expect = 4.434e-50
Identity = 140/500 (28.00%), Postives = 251/500 (50.20%), Query Frame = 3
Query:  246 NTTVHAKKLQKR---ESLIIKFCSNSSIRGLSRISANQNFSLKSIWLIFXXXXXXXXXXXXXXXXFEYLEYNTLINSRENHEMITIFPGITLCNHYPFHMDANKLWQSAEVLSPLKFNSIIRQMVKDNYLKN-FSLAKLLFTSDTITSYFETIGSFKAQMISHNSSQIMYCLLLLKNSKIRVGHNNECGII----IKTVPNSQFLTCQNIR-IHSNYSTNAVALGLIIHMDDLSKHLNTLELGLVQDVFKQAHGLRILLHEPDTLADFSLDGFNVEPGKFTDVKFSAVKWIKINTPKEPCWSQEIIXXXXXXXXXXXXYTYDTCKNEEIGKLIYKQCNCYSSKYPLPFDIDENNVTFCSKI----NLSDSLEVIKRLSCLDQLESLEPIKQIMSENKCIRRCTYMTYECHLSTAHWALSNWKLYWL----MTMNDALNALESNKHESINSAKSIFQQYISQSETNLSKNVTN----LIKTSDDLFLVINRQSFMTLEKVE 1682
            N+  H K ++K    ++  I FCS  SIRG+++I       L+ +WL F+L MS +L   S  L  +++ Y+  IN++   + +T FP +T+C+H+PF     ++W+S + +SP  FN  +R +  D  L N    A+ +   D I+ Y++ +   +A  + HNSS  + C+ LL+N +I    N  C  +    IK + + +   C        + S+N   LG+I+ +    KH + +E   + D F+QA GL++++HE  TL D    G +VEPGK  ++ +   +W   NTP +PC + +  +       N ++YT   C      + I  QC+C     P P   +E ++ +C  I    NLS+    +K   CL  + + +  +Q   + KC  RC YMT++  +S   W  + W LYWL     ++ +    L++N + ++  +++     I  ++ +L K        L+K  +  ++V+ R+S  +++K E
Sbjct:   43 NSISHGKIIKKDFQPKNFFILFCSTISIRGINKIIKGPR-PLRLLWLCFVLIMSAILITSSCLLVRDFMLYDVNINTKLEIDSMTPFPALTVCHHHPFSHRGYRMWKSGKAMSPSYFNRKMRNLTLDQLLLNDVESAETISYYDGISIYYQNLPYEQAIQMGHNSSIFLTCMYLLEN-QIYFAEN--CTKLEFYRIKLLSHHEHFNCYTFEPTQPHVSSNLDMLGIIVSLGPEPKHFD-MEQSFIIDTFRQAQGLKVIVHESGTLPDIDEAGLHVEPGKMNEIIYRPNQWQLTNTPAKPCIN-DTSRIAYVDLANTYNYTKHLCLKYAEQEDIMNQCHCMFIYNPRPMMPNE-SMPYCGSILKDFNLSNIYSYVK---CLSDVLNQKSKRQQWEKEKCFHRCNYMTFDSTISITKWRATEWHLYWLRQQITSLGEMKQFLKANPNRNVTESQAFKTWLIYGNKKDLRKTGLKANEFLLKDDNFAYIVLRRESKDSVKKYE 532          
BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. Planmine SMEST
Match: SMESG000062815.1 (SMESG000062815.1)

HSP 1 Score: 180.644 bits (457), Expect = 1.531e-48
Identity = 131/509 (25.74%), Postives = 248/509 (48.72%), Query Frame = 3
Query:  246 NTTVHAKKLQKRESLIIKFCSNSSIRGLSRISANQNFSLKSIWLIFXXXXXXXXXXXXXXXXFEYLEYNTLINSRENHEMITIFPGITLCNHYPFHMDANKLWQSAEVLSPLKFNSIIR--------QMVKDNYLK---NFSLAKLLFT-SDTITSYFETIGSFKAQMISHNSSQIMYCLLLLKNSKIRVGHNNECGIIIKTVPNSQFLTCQNIRIHSNYSTNAVALGLIIHMDDLSKHLNTLELGLVQDVFKQAHGLRILLHEPDTLADFSLDGFNVEPGKFTDVKFSAVKWIKINTPKEPCWSQEIIXXXXXXXXXXXXYTYDTCKNEEIGKLIYKQCNCYSSKYPLPFDIDENNVTFCSKINLSDSLEVIKRLSCLDQL--ESLEPIKQIMSENKCIRRCTYMTYECHLSTAHWALSNWKLYWLMTMNDALNALESNKHESIN--------SAKSIFQQYISQSETNLS-KNVTNLIKTSDDL-------FLVINRQSFMTLEKVE 1682
            N+ +  KK ++   +I KF +N+SIRG SRI  ++   L+++W++F++S    L V    +  +Y +Y+  I +    +  T FP +T CNH PF   A +LW+ ++V+SP +FN + R         MV+        +F+    L T +D ++ Y++ + +  +  + HN S I  C+           H  +  +I+K + +  +  C  +  H  Y++    LGLII +    +       G + D+F+QA+GLR+++HEP++  +   +G  +EPG+  ++ +     IK++T ++PC ++       +  +N F Y  D C N E+ + I  +C C    YP  +      + +C  +      +++ R +C+ ++  E+ +    + ++ KCI  C+ + Y    S   W  ++W+LYWL  + DA     +    +IN        + + + Q   S+ ET  + KN++  I  S+ L       F+V+ R++  T  K E
Sbjct:    2 NSVIGNKKNKQCFEVIRKFFANTSIRGFSRIVKSETTFLRTLWILFVVSTITFLIVSIFKVVIDYRQYSVNIQTYIQIDNATPFPALTFCNHQPFSERAYQLWEESKVMSPTQFNELFRSEALKQFKDMVRTKMTPKDSDFNHPLFLTTINDRLSVYYQNLPTTVSSELGHNISIIKNCVWSYGQHMAFDNHCQDDMLIVKNISHPSYFNCFTVEPHPKYASIFSRLGLIIWLGPDEQTNIKHRQGFLFDIFEQAYGLRVIIHEPNSYPNIESEGVQIEPGRLNELNYQPELNIKVDTERKPCINEP--DRIYRDLDNVFKYDIDLCFNMELQQRIITECKCIYGYYPR-YLHPSKELPYCGYLEPEKYHDLLFRKNCITKIFNEAPDIKSNLKADKKCIHSCSSIEYTTTTSVTKWRPTDWQLYWLKEVLDAWAQYYNLMARNINIPSNNMTTTDRIMLQNLTSRIETFFTRKNLSEFIPESEKLLFNERYTFVVVKRKANNTFIKEE 507          
The following BLAST results are available for this feature:
BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 1
Match NameE-valueIdentityDescription
sp|Q25011|FANA_CORAP6.290e-1120.39FMRFamide-activated amiloride-sensitive sodium cha... [more]
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BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0R3SH185.106e-5128.95Uncharacterized protein OS=Hymenolepis diminuta OX... [more]
A0A1I8G5D03.631e-5026.11G_PROTEIN_RECEP_F1_2 domain-containing protein OS=... [more]
A0A068XZW89.316e-5028.87FMRFamide activated amiloride sensitive sodium OS=... [more]
U6JC631.184e-4928.87FMRFamide activated amiloride sensitive sodium OS=... [more]
A0A0R3WN073.970e-4928.76Uncharacterized protein OS=Hydatigena taeniaeformi... [more]
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BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000004049.10.000e+099.64SMESG000004049.1[more]
SMESG000060702.11.076e-5629.71SMESG000060702.1[more]
SMESG000039581.13.212e-5329.57SMESG000039581.1[more]
SMESG000043119.14.434e-5028.00SMESG000043119.1[more]
SMESG000062815.11.531e-4825.74SMESG000062815.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30032830 ID=SMED30032830|Name=FMRFamide-activated amiloride-sensitive sodium channel|organism=Schmidtea mediterranea sexual|type=transcript|length=1939bp
CGTAACTGGTGTATAATCGCACTGAGAATGAATTTATTCCAGTGATAACT
TTTAATATTATAAACCAATTATTTTTATTCATTATACTGTACAATCAAGA
TGCAGTAAAACAAAAGTTTATATAATTATTTATATATTGTCTTTATTGTT
TTTAGGGAATTATGACAAAACCGGAAAAGATTTATGTGAGAAACGGTATA
ATTGCATTCCATACAAAAGGTAAACAAATAGTCAAATATCAAAACAATAC
GACAGTACACGCAAAGAAACTGCAAAAAAGAGAATCTCTAATTATCAAGT
TTTGTTCGAATTCTTCAATCAGAGGGTTAAGCAGAATCAGCGCAAATCAA
AATTTCTCATTAAAGTCAATTTGGTTAATATTTTTATTGTCGATGTCTGT
TTTATTAACGGTTGGGAGTTTGAGTTTAACCTTCGAATACCTGGAGTATA
ACACGTTGATTAATAGTCGAGAGAATCACGAAATGATAACGATATTTCCA
GGAATAACCTTATGCAACCATTATCCTTTCCATATGGACGCCAACAAATT
ATGGCAATCCGCCGAAGTTCTGTCGCCTTTGAAGTTCAATTCCATAATAA
GACAGATGGTGAAGGATAACTATTTAAAAAACTTTTCTCTAGCGAAATTA
CTTTTTACTAGTGACACAATCACATCTTATTTCGAAACAATTGGATCATT
CAAAGCTCAAATGATAAGCCACAATTCAAGCCAAATCATGTATTGTTTGT
TGTTGTTAAAGAATTCCAAAATCCGAGTTGGCCATAATAACGAATGTGGA
ATCATAATCAAAACCGTTCCCAATAGTCAGTTCCTTACTTGCCAAAATAT
CCGAATTCATTCCAATTATTCAACAAATGCCGTCGCACTGGGACTTATCA
TTCATATGGATGATTTGTCGAAACATTTGAATACTTTGGAACTTGGATTG
GTTCAAGATGTATTCAAACAAGCTCACGGATTGAGAATATTACTTCATGA
ACCGGACACGTTAGCAGACTTCAGTTTAGATGGATTTAATGTGGAGCCCG
GCAAGTTTACTGATGTCAAGTTTAGTGCTGTAAAATGGATAAAAATTAAT
ACTCCCAAAGAGCCATGTTGGTCTCAAGAGATCATCAAAAGTAAAGACAA
AAAATTCAACAACAATTTCTCCTACACTTATGACACTTGTAAAAATGAAG
AAATAGGGAAATTAATTTATAAACAATGCAACTGTTATTCATCAAAATAT
CCATTACCGTTTGATATAGACGAAAATAATGTTACGTTTTGTTCAAAAAT
TAACCTTTCAGATTCTCTGGAAGTAATCAAACGACTGAGTTGTCTCGATC
AACTGGAATCCCTAGAGCCCATCAAACAAATCATGTCGGAAAATAAATGC
ATCCGTCGATGTACATATATGACCTATGAATGCCATTTGTCAACCGCTCA
TTGGGCGTTATCCAATTGGAAGCTGTATTGGTTAATGACAATGAACGATG
CGCTAAATGCTCTCGAATCAAACAAGCACGAAAGCATTAACAGCGCAAAA
TCCATTTTTCAACAATACATCAGCCAATCAGAAACGAATTTATCAAAAAA
TGTCACGAATTTAATTAAAACCAGTGATGATTTATTTCTTGTAATTAACC
GACAGTCTTTTATGACTCTGGAAAAAGTCGAAGTTTTCAGTTTAACCCGA
AGCGCATTATTAAGTAGACTCGGTGGACTTTCATCTATAACGTTGGGAAT
TACTTTTACTACGATTTTTGAAATTGCAGAATTTTTAATAACATTTTTTC
AGGGAATTCAATTTCGAAACATTAAAAACCTTAGGAGATCATAGTTTTGA
AATTACTCAATTTTCCGATTAATTATTTTTAATTTTATTGATTAATTACA
AAGTCTGAATAATTAAAAATAATAAAAATATTGTTCGGT
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protein sequence of SMED30032830-orf-1

>SMED30032830-orf-1 ID=SMED30032830-orf-1|Name=SMED30032830-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=561bp
MTKPEKIYVRNGIIAFHTKGKQIVKYQNNTTVHAKKLQKRESLIIKFCSN
SSIRGLSRISANQNFSLKSIWLIFLLSMSVLLTVGSLSLTFEYLEYNTLI
NSRENHEMITIFPGITLCNHYPFHMDANKLWQSAEVLSPLKFNSIIRQMV
KDNYLKNFSLAKLLFTSDTITSYFETIGSFKAQMISHNSSQIMYCLLLLK
NSKIRVGHNNECGIIIKTVPNSQFLTCQNIRIHSNYSTNAVALGLIIHMD
DLSKHLNTLELGLVQDVFKQAHGLRILLHEPDTLADFSLDGFNVEPGKFT
DVKFSAVKWIKINTPKEPCWSQEIIKSKDKKFNNNFSYTYDTCKNEEIGK
LIYKQCNCYSSKYPLPFDIDENNVTFCSKINLSDSLEVIKRLSCLDQLES
LEPIKQIMSENKCIRRCTYMTYECHLSTAHWALSNWKLYWLMTMNDALNA
LESNKHESINSAKSIFQQYISQSETNLSKNVTNLIKTSDDLFLVINRQSF
MTLEKVEVFSLTRSALLSRLGGLSSITLGITFTTIFEIAEFLITFFQGIQ
FRNIKNLRRS*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000099neuron
Vocabulary: INTERPRO
TermDefinition
IPR001873ENaC
Vocabulary: cellular component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: biological process
TermDefinition
GO:0006814sodium ion transport
GO:0006810transport
GO:0006811ion transport
GO:0035725sodium ion transmembrane transport
Vocabulary: molecular function
TermDefinition
GO:0005272sodium channel activity
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001873Epithelial sodium channelPRINTSPR01078AMINACHANNELcoord: 413..433
score: 25.71
coord: 108..124
score: 36.47
coord: 273..291
score: 26.32
coord: 349..366
score: 31.11
IPR001873Epithelial sodium channelPFAMPF00858ASCcoord: 47..541
e-value: 2.7E-44
score: 151.8
IPR001873Epithelial sodium channelPANTHERPTHR11690AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATEDcoord: 46..546
NoneNo IPR availableGENE3DG3DSA:1.10.3590.10coord: 121..273
e-value: 1.1E-28
score: 102.4
NoneNo IPR availableGENE3DG3DSA:2.60.470.10coord: 98..507
e-value: 1.1E-28
score: 102.4
NoneNo IPR availableGENE3DG3DSA:1.10.287.770coord: 69..539
e-value: 1.1E-28
score: 102.4
NoneNo IPR availableGENE3DG3DSA:1.10.287.820coord: 311..417
e-value: 1.1E-28
score: 102.4
NoneNo IPR availablePANTHERPTHR11690:SF222PICKPOCKET 6-RELATEDcoord: 46..546
NoneNo IPR availableTMHMMTMhelixcoord: 69..91
NoneNo IPR availableTMHMMTMhelixcoord: 527..549