SCO-spondin

Overview


Name	SCO-spondin
Smed ID	SMED30032818
Length (bp)	2338

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of SCO-spondin (SMED30032818) t-SNE clustered cells

Violin plots show distribution of expression levels for SCO-spondin (SMED30032818) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SCO-spondin (SMED30032818) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SCO-spondin (SMED30032818) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30032818

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 41

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
parapharyngeal region	SMED30032818	h1SMcG0018856	SmedASXL_074463	SmedAsxl_ww_GCZZ01	PMID:27034770 Currie et al., 2016
parapharyngeal region	SMED30032818	h1SMcG0018856	SmedASXL_019902	SmedAsxl_ww_GCZZ01	PMID:27034770 Currie et al., 2016
parapharyngeal region	SMED30032818	h1SMcG0018856	SmedASXL_025596	SmedAsxl_ww_GCZZ01	PMID:27034770 Currie et al., 2016
parapharyngeal region	SMED30032818	h1SMcG0018856	SmedASXL_015921	SmedAsxl_ww_GCZZ01	PMID:27034770 Currie et al., 2016
parapharyngeal region	SMED30032818	h1SMcG0018856	SmedASXL_015920	SmedAsxl_ww_GCZZ01	PMID:27034770 Currie et al., 2016
parapharyngeal region	SMED30032818	h1SMcG0018856	SmedASXL_015919	SmedAsxl_ww_GCZZ01	PMID:27034770 Currie et al., 2016
muscle cell	SMED30032818	h1SMcG0018856	dd_Smed_v4_1647_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
nervous system	SMED30032818	h1SMcG0018856	dd_Smed_v4_10746_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cephalic ganglia	SMED30032818	h1SMcG0018856	dd_Smed_v4_10746_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
nervous system	SMED30032818	h1SMcG0018855	dd_Smed_v4_10746_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cephalic ganglia	SMED30032818	h1SMcG0018855	dd_Smed_v4_10746_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30032818	h1SMcG0018856	Contig46457	uc_Smed_v2	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30032818	h1SMcG0018856	Contig46457	newmark_ests	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30032818	h1SMcG0018856	Contig45454	uc_Smed_v2	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30032818	h1SMcG0018856	Contig45454	newmark_ests	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30032818	h1SMcG0018854	Contig14068	newmark_ests	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30032818	h1SMcG0018854	Contig14068	uc_Smed_v2	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30032818	h1SMcG0018855	Contig10526	newmark_ests	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30032818	h1SMcG0018855	Contig10526	uc_Smed_v2	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30032818	h1SMcG0018856	Contig10526	newmark_ests	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30032818	h1SMcG0018856	Contig10526	uc_Smed_v2	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30032818	h1SMcG0018853	Contig14068	newmark_ests	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30032818	h1SMcG0018853	Contig14068	uc_Smed_v2	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30032818	h1SMcG0018855	Contig14068	newmark_ests	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30032818	h1SMcG0018855	Contig14068	uc_Smed_v2	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30032818	h1SMcG0018856	Contig14068	newmark_ests	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30032818	h1SMcG0018856	Contig14068	uc_Smed_v2	PMID:29674431 Fincher et al., 2018
gut	SMED30032818	h1SMcG0018856	dd_Smed_v4_651_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
muscle cell	SMED30032818	h1SMcG0018856	dd_Smed_v4_651_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchymal cell	SMED30032818	h1SMcG0018856	dd_Smed_v4_651_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parapharyngeal region	SMED30032818	h1SMcG0018856	dd_Smed_v6_651_0_1	dd_Smed_v6	PMID:28171748 Stückemann et al., 2017
parapharyngeal region	SMED30032818	h1SMcG0018856	dd_Smed_v6_1647_0_1	dd_Smed_v6	PMID:28171748 Stückemann et al., 2017
parapharyngeal region	SMED30032818	h1SMcG0018856	dd_Smed_v6_10746_0_1	dd_Smed_v6	PMID:28171748 Stückemann et al., 2017
parapharyngeal region	SMED30032818	h1SMcG0018855	dd_Smed_v6_10746_0_1	dd_Smed_v6	PMID:28171748 Stückemann et al., 2017
parapharyngeal region	SMED30032818	h1SMcG0018856	dd_Smed_v6_12625_0_1	dd_Smed_v6	PMID:28171748 Stückemann et al., 2017
head region	SMED30032818	h1SMcG0018856	OX_Smed_1.0.05555	ox_Smed_v2	PMID:24238224 Kao et al., 2013
reproductive organ	SMED30032818	h1SMcG0018856	Contig46551	uc_Smed_v2	PMID:28434803 Rouhana et al., 2017
reproductive organ	SMED30032818	h1SMcG0018856	Contig46551	newmark_ests	PMID:28434803 Rouhana et al., 2017
epidermis	SMED30032818	h1SMcG0018856	dd_Smed_v4_1647_0_1	dd_Smed_v4	PMID:28292427 Wurtzel et al., 2017
Category 2 cell	SMED30032818	h1SMcG0018856	dd_Smed_v4_651_0_1	dd_Smed_v4	PMID:28292427 Wurtzel et al., 2017
gut	SMED30032818	h1SMcG0018856	dd_Smed_v4_651_0_1	dd_Smed_v4	PMID:30962434 Cote et al., 2019

Note: Hover over icons to view figure legend

Homology

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BLAST of SCO-spondin vs. TrEMBL
Match: A0A1I8G0U9 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.837e-23
Identity = 169/634 (26.66%), Postives = 266/634 (41.96%), Query Frame = 3

Query:  147 SRGSEKFEFNFDQTDKNGEQFEYMKVSIRTNVGYTL--TVKNLIVKVCYESVSTAQTSAPTQEVTTSVCKEDSTDIITNCLMKKCINGTWTHRKVCLLTCSEKTHKLVENDNQCCEC---LPXXXXXXXXXXXXXXXXXPFCKPPLIHTFCVKPTCESMCEAQQLSNCTRQECKPGCECPENLFFNGKD-CVSRKECMCLDENGGIRKNGEEWTINCKNYVC-DGIVTKRIFNDCQGVSLNCPP-EFQIMVDCCMVCNIXXXXXXXPHIS----------VCKF----ENQTLQ--VGETVIR-KVDFCEDDTCVCNQVGGLTCTR---NGDKLRNCKESCSSKKCDGLIVPRNEKCICECNCLXXXXXXXXXXXXXXXKCDLPCD--IGDLENLELNQFKKYCNLTNLICG---ECPSTDFRYIDSAT--GIQYCLG-----ACCKFNGKKIKAGESVPQLTNNGTEIPCSYCQCLINGRFKCMKDDNXXXXXXXXXXXXXXXXXXXXXXXVEESVFQT--CRKQICLKFQENCLKDGLCDGSICECKEP-LVFNGTDCINVKECPCLDPITRKQFKVGESWIDATDECRIHLCKGNEIETKEIRKECPILECPEGCIKTIVEERNKCCPICS 1919
            S G     F+ + TD  G     ++V+     G  +  +V  L++  C+E      ++      TT +C      +I+ C+ + C +G W  +K C + C      +  + + CC+C      +T  + TTT    TTTP C  P+  + C++   +      + S+  +  C+ GC+CP     N  + CV  ++C C   +G +R  G+ W ++C  Y C +  ++      C+  S+ CP     +  DCC  C     T                 VC +     N+T++  + ET +   V       C C     + C     +  +   C ESC  K      V  N    C C C  S +            C+LPC+  +G L+   L    K    T   C      P      + SAT  G ++C         C +NGK++     V ++ + G+ IPC  C C  +    C    NC  TTT+   TT+    +  K   EESV  T  CR++IC   + +C+  G C+   CECK   L FNGT C+N   C C D     + K GE W + TD C+ H+C  N+I+T + R +CP   CP   ++ +     KCC IC+
Sbjct: 1953 SSGLVSLSFSNETTD--GVSATAVRVTFPRGSGVKVNPSVSGLLISACFEV-----STTVVAPTTTPICASGDKKVISECISQVCESGAWIRKKSCSIECGSSCSIVHFSGDACCKCSCGTTTTTRVVTTTTAPPTTTTPMCAAPMEPSDCMRKCRKCHYIEPECSSEGKFPCESGCQCPSGYRMNSTNHCVKSEDCSCRSPDGKVRSAGDVWVVDCIRYTCANNTISNLGRVPCR--SVTCPAGSMMVTADCCPSCVTKPPTTGPETTLPPTTTVAPKRVCHYLDPATNRTVEKSINETWVETAVGTSCKRVCSCTTAAMVECKSVAISAAEKAQCLESCQKKYPTDKDVKANFDSSCRCGCTSSCTELKV--------CELPCNETVGSLDEQNLYCLSKGLFKTEPKCTCSEALPGYGSSEVRSATFGGAKHCFAQKTCTKSCNYNGKRVPIHGVVKEVDSTGSVIPCRECTCGESFTMSCNTVKNCTVTTTEAPKTTTAPGCSCAKP-YEESVNSTGKCREKICHYLKGSCVSRGECN---CECKGAYLFFNGTTCVNQANCYCKDENGALR-KNGEKWQNPTDPCKTHMCVDNQIQTSDRRPDCPKFVCPPDSVRQV--PPGKCCAICT 2562

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BLAST of SCO-spondin vs. TrEMBL
Match: A0A267DLR6 (Uncharacterized protein (Fragment) OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig026350g2 PE=4 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.945e-23
Identity = 176/683 (25.77%), Postives = 281/683 (41.14%), Query Frame = 3

Query:    3 EISFVIKLTPKSXXXXXXXXXXXXXXXXXXXXXXFGKKSDEIVESQYKSRGSEKF-EFNFDQTDKNGEQFEYMKVSIRTNVGYTL--TVKNLIVKVCYESVSTAQTSAPTQEVTTSVCKEDSTDIITNCLMKKCINGTWTHRKVCLLTCSEKTHKLVENDNQCCEC---LPXXXXXXXXXXXXXXXXXPFCKPPLIHTFCVKPTCESMCEAQQLSNCTRQECKPGCECPENLFFNGKD-CVSRKECMCLDENGGIRKNGEEWTINCKNYVC-DGIVTKRIFNDCQGVSLNCPP-EFQIMVDCCMVC----------NIXXXXXXXPHISVCKF----ENQTLQ--VGETVIR-KVDFCEDDTCVCNQVGGLTCTR---NGDKLRNCKESCSSKKCDGLIVPRNEKCICECNCLXXXXXXXXXXXXXXXKCDLPCD--IGDLENLELNQFKKYCNLTNLICG---ECPSTDFRYIDSAT--GIQYCLG-----ACCKFNGKKIKAGESVPQLTNNGTEIPCSYCQCLINGRFKCMKDDNXXXXXXXXXXXXXXXXXXXXXXXVEESVFQT--CRKQICLKFQENCLKDGLCDGSICECKEP-LVFNGTDCINVKECPCLDPITRKQFKVGESWIDATDECRIHLCKGNEIETKEIRKECPILECPEGCIKTIVEERNKCCPICS 1919
            E   V  +TP+  +   I  LE+       V + F   SD     +  +  S      +F     +G     ++V+     G  +  +V  L++  C+E      ++      TT +C      +I+ C+ + C +G W  +K C + C      +  + + CC+C      +T  + TTT    TTTP C  P+  + C++   +      + S+  +  C+ GC+CP     N  + CV  ++C C   +G +R  G+ W ++C  Y C +  ++      C+  S+ CP     +  DCC  C               T T     VC +     N+T++  + ET +   V       C C     + C     +  +   C E C  K      V  N    C C C  S +            C+LPC+  +G L+   L    K    T   C      P      + SAT  G ++C         C +NGK++     V ++ + G+ IPC  C C  +    C    NC  TTT+   TT+    +  K   EESV  T  CR++IC   + +C+  G C+   CECK   L FNGT C+N   C C D     + K GE W + TD C+ H+C  N+I+T + R +CP   CP   ++ +     KCC +C+
Sbjct: 1921 EPRLVFAITPRPGSRTIITKLELTATRARSVEVEFTSGSDIWYSKRVATPSSSGLVSLSFSNETTDGVSATAVRVTFPRGSGVKVNPSVSGLLISACFE-----VSTTVVAPTTTPICASGDKKVISECISQVCESGAWIRKKSCSIECGSSCSIVHFSGDACCKCSCGTTTTTRVVTTTTAPPTTTTPMCAAPMEPSDCMRKCRKCHYIEPECSSEGKFPCESGCQCPSGYRMNSTNHCVKSEDCSCRSPDGKVRSAGDVWVVDCIRYTCANNTISNLGRVPCK--SVTCPAGSMMVTADCCPSCVTKPPTTGPETTLPPTTTVAPKRVCHYLDPATNRTVEKSINETWVETAVGTSCKRVCSCTTAAMVECKSVAISAAEKAQCLEICQKKYPTDKDVKANFDSSCRCGCTSSCTELKV--------CELPCNETVGSLDEQNLYCLSKGLFKTEPKCTCSEALPGYGSSEVRSATFGGAKHCFAQKTCTKSCNYNGKRVPIHGVVKEVDSTGSVIPCRECTCGESFTMSCNTVKNCTVTTTEAPKTTTAPGCSCAKP-YEESVNSTGKCREKICHYLKGSCVSRGECN---CECKGAYLFFNGTTCVNQANCYCKDENGALR-KNGEKWQNPTDPCKTHMCVDNQIQTSDRRPDCPKFVCPPDSVRQV--PPGKCCAVCT 2581

[Close]

BLAST of SCO-spondin vs. TrEMBL
Match: A0A267GUZ7 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig026350g1 PE=4 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.124e-22
Identity = 179/688 (26.02%), Postives = 283/688 (41.13%), Query Frame = 3

Query:    3 EISFVIKLTPKSXXXXXXXXXXXXXXXXXXXXXXFGKKSDEIVESQYKSRGSEKF-EFNFDQTDKNGEQFEYMKVSIRTNVGYTL--TVKNLIVKVCYESVSTAQTSAPTQEVTTSVCKEDSTDIITNCLMKKCINGTWTHRKVCLLTCSEKTHKLVENDNQCCEC---LPXXXXXXXXXXXXXXXXXPFCKPPLIHTFCVKPTCESMCEAQQLSNCTRQECKPGCECPENLFFNGKD-CVSRKECMCLDENGGIRKNGEEWTINCKNYVC-DGIVTKRIFNDCQGVSLNCPP-EFQIMVDCCMVCNIXXXXXXXPHIS----------VCKF----ENQTLQ--VGETVIR-KVDFCEDDTCVCNQVGGLTCTR---NGDKLRNCKESCSSKKCDGLIVPRNEKCICECNCLXXXXXXXXXXXXXXXKCDLPCD--IGDLENLELNQFKKYCNLTNLI-------CGEC-PSTDFRYIDSAT--GIQYCLG-----ACCKFNGKKIKAGESVPQLTNNGTEIPCSYCQCLINGRFKCMKDDNXXXXXXXXXXXXXXXXXXXXXXXVEESVFQT--CRKQICLKFQENCLKDGLCDGSICECKEP-LVFNGTDCINVKECPCLDPITRKQFKVGESWIDATDECRIHLCKGNEIETKEIRKECPILECPEGCIKTIVEERNKCCPICS 1919
            E   V  +TP+  +   I  LE+       V + F   SD     +  +  S      +F     +G     ++V+     G  +  +V  L++  C+E      ++      TT +C      +I+ C+ + C +G W  +K C + C      +  + + CC+C      +T  + TTT    TTTP C  P+  + C++   +      + S+  +  C+ GC+CP     N  + CV  ++C C   +G +R  G+ W ++C  Y C +  ++      C+  S+ CP     +  DCC  C     T                 VC +     N+T++  + ET +   V       C C     + C     +  +   C ESC  K      V  N    C C C  S +            C+LPC+  +G L+   L     YC    L        C E  P      + SAT  G ++C         C +NGK++     V ++ + G+ IPC  C C  +    C    NC  TTT+   TT+    +  K   EESV  T  CR++IC   + +C+  G C+   CECK   L FNGT C+N   C C D     + K GE W + TD C+ H+C  N+I+T + R +CP   CP   ++ +     KCC IC+
Sbjct: 1921 EPRLVFAITPRPGSRTIITKLELTATRARSVEVEFTSGSDIWYSKRVATPSSSGLVSLSFSNETTDGVSATAVRVTFPRGSGVKVNPSVSGLLISACFEV-----STTVVAPTTTPICASGDKKVISECISQVCESGAWIRKKSCSIECGSSCSIVHFSGDACCKCSCGTTTTTRVVTTTTAPPTTTTPMCAAPMEPSDCMRKCRKCHYIEPECSSEGKFPCESGCQCPSGYRMNSTNHCVKSEDCSCRSPDGKVRSAGDVWVVDCIRYTCANNTISNLGRVPCR--SVTCPAGSMMVTADCCPSCVTKPPTTGPETTLPPTTTVAPKRVCHYLDPATNRTVEKSINETWVETAVGTSCKRVCSCTTAAMVECKSVAISAAEKAQCLESCQKKYPTDKDVKANFDSSCRCGCTSSCTELKV--------CELPCNETVGSLDEQNL-----YCLSKGLFKTEPKCTCSEALPGYGSSEVRSATFGGAKHCFAQKTCTKSCNYNGKRVPIHGVVKEVDSTGSVIPCRECTCGESFTMSCNTVKNCTVTTTEAPKTTTAPGCSCAKP-YEESVNSTGKCREKICHYLKGSCVSRGECN---CECKGAYLFFNGTTCVNQANCYCKDENGALR-KNGEKWQNPTDPCKTHMCVDNQIQTSDRRPDCPKFVCPPDSVRQV--PPGKCCAICT 2581

[Close]

BLAST of SCO-spondin vs. TrEMBL
Match: A0A1I8GY38 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.916e-17
Identity = 154/580 (26.55%), Postives = 241/580 (41.55%), Query Frame = 3

Query:  270 IVKVCYESVSTAQTSAPTQEVTTSVCKEDSTD--IITNCLMKKCINGTWTHRKVCLLTCSEKTHKLVENDNQCCEC---LPXXXXXXXXXXXXXXXXXPFCKPPLIHTFCVKPTCESMCEAQQLSNCTRQECKPGCECPENLFFNGKDCVSRKECMCLDENGGIRKNGEEWTINCKNYVC-DGIVTKRIFNDCQGVSLNCPP-EFQIMVDCCMVC----------NIXXXXXXXPHISVCKF----ENQTLQ--VGETVIR-KVDFCEDDTCVCNQVGGLTCTR---NGDKLRNCKESCSSKKCDGLIVPRNEKCICECNCLXXXXXXXXXXXXXXXKCDLPCD--IGDLENLELNQFKKYCNLTNLICG---ECPSTDFRYIDSAT--GIQYCLG-----ACCKFNGKKIKAGESVPQLTNNGTEIPCSYCQCLINGRFKCMKDDNXXXXXXXXXXXXXXXXXXXXXXXVEESVFQT--CRKQICLKFQENCLKDGLCDGSICECKEP-LVFNGTDCINVKECPCLDPITRKQFKVGESWIDATDECRIHLCKGNEIETKEIRKECPILECPEGCIKTI 1883
            +V + + + +T   SA    VT    +  S D  +I+ C+ + C +G W  +K C + C      +  + + CC+C      +T  + TTT    TTTP C  P+  + C++   +      + S+  +  C+ GC               +K+C C   +G +R  G+ W ++C  Y C +  ++      C+  S+ CP     +  DCC  C               T T     VC +     N+T++  + ET +   V       C C     + C     +  +   C ESC  K      V  N    C C C  S +            C+LPC+  +G L+   L    K    T   C      P      + SAT  G ++C         C +NGK++     V ++ + G+ IPC  C C  +    C    NC  TTT+   TT+    +  K   EESV  T  CR++IC   + +C+  G C+   CECK   L FNGT C+N   C C D     + K GE W + TD C+ H+C  N+I+T + R +CP   CP   ++ +
Sbjct: 1963 LVSLSFSNETTDGVSATAVRVTFPAAQASSGDKKVISECISQVCESGAWIRKKSCSIECGSSCSIVHFSGDACCKCSCGTTTTTRVVTTTTAPPTTTTPMCAAPMEPSDCMRKCRKCHYIEPECSSEGKFPCESGCH--------------QKDCSCRSPDGKVRSAGDVWVVDCIRYTCANNTISNLGRVPCR--SVTCPAGSMMVTADCCPSCVTKPPTTGPETTLPPTTTVAPKRVCHYLDPATNRTVEKSINETWVETAVGTSCKRVCSCTTAAMVECKSVAISAAEKAQCLESCQKKYPTDKDVKANFDSSCRCGCTSSCTELKV--------CELPCNETVGSLDEQNLYCLSKGLFKTEPKCTCSEALPGYGSSEVRSATFGGAKHCFAQKTCTKSCNYNGKRVPIHGVVKEVDSTGSVIPCRECTCGESFTMSCNTVKNCTVTTTEAPKTTTAPGCSCAKP-YEESVNSTGKCREKICHYLKGSCVSRGECN---CECKGAYLFFNGTTCVNQANCYCKDENGALR-KNGEKWQNPTDPCKTHMCVDNQIQTSDRRPDCPKFVCPPDSVRQV 2513

[Close]

BLAST of SCO-spondin vs. TrEMBL
Match: A0A0L8FZQ8 (Uncharacterized protein (Fragment) OS=Octopus bimaculoides OX=37653 GN=OCBIM_22003392mg PE=4 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 7.223e-7
Identity = 55/169 (32.54%), Postives = 79/169 (46.75%), Query Frame = 3

Query:  345 CKEDSTDIITNCLMKKCINGTWTHRKVCLLTCSEKTHKLVENDNQCCECLPXXX----------------XXXXXXXXXXXXXXPFCKPPLIHTFCVKPTCESMCEAQQLSNCTRQE---CKPGCECPENLFFNGKDCVSRKECMCLDENGGIRKNGEEWTINCKNYVC 794
            C E+ T I+  C  + CI+G +     C   C++    LV  D +CC+C+ ++T                    T+     TTT  C+ PL  T C+K    + C   +  NCT      C+ GC+CP NL FNG  CV    C+CLD+ G +RK G+ W  +C  Y C
Sbjct:  999 CIENETRILNECFNEICIDGEFQRVPACNKKCADN-ETLVIRDKECCQCVALTTPVTRTNVYTTTRYSSGTQWTTSISPTQTTTGVCEEPLERTDCMKEC--TKCHLLE-PNCTPTGPFICETGCDCPVNLVFNGTHCVYPGSCICLDDEGNLRKPGDVWIKDCYEYTC 1163

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BLAST of SCO-spondin vs. Ensembl Sea Lamprey
Match: ENSPMAT00000000981.1 (pep scaffold:Pmarinus_7.0:GL476384:615201:646381:-1 gene:ENSPMAG00000000884.1 transcript:ENSPMAT00000000981.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 48.9062 bits (115), Expect = 4.284e-6
Identity = 25/73 (34.25%), Postives = 31/73 (42.47%), Query Frame = 3

Query:  549 PFCKPPLIHTFCVKPTCESMCEAQQLSNCTRQECKPGCECPENLFFNGKDCVSRKECMCLDENGGIRKNGEEW 767
            PF   P  H     P C + C    L     Q+C  GC C +    +G  CV  ++C CLD NG     GE W
Sbjct:  771 PFPCEPGSHYESCAPPCPATCSNASLPGGCNQQCAEGCVCDDGFVLSGDKCVPTEQCGCLDNNGHYHPLGESW 843

[Close]

BLAST of SCO-spondin vs. Planmine SMEST
Match: SMESG000025545.1 (SMESG000025545.1)

HSP 1 Score: 1318.52 bits (3411), Expect = 0.000e+0
Identity = 738/739 (99.86%), Postives = 739/739 (100.00%), Query Frame = 3

Query:    3 EISFVIKLTPKSXXXXXXXXXXXXXXXXXXXXXXFGKKSDEIVESQYKSRGSEKFEFNFDQTDKNGEQFEYMKVSIRTNVGYTLTVKNLIVKVCYESVSTAQTSAPTQEVTTSVCKEDSTDIITNCLMKKCINGTWTHRKVCLLTCSEKTHKLVENDNQCCECLPXXXXXXXXXXXXXXXXXPFCKPPLIHTFCVKPTCESMCEAQQLSNCTRQECKPGCECPENLFFNGKDCVSRKECMCLDENGGIRKNGEEWTINCKNYVCDGIVTKRIFNDCQGVSLNCPPEFQIMVDCCMVCNIXXXXXXXPHISVCKFENQTLQVGETVIRKVDFCEDDTCVCNQVGGLTCTRNGDKLRNCKESCSSKKCDGLIVPRNEKCICECNCLXXXXXXXXXXXXXXXKCDLPCDIGDLENLELNQFKKYCNLTNLICGECPSTDFRYIDSATGIQYCLGACCKFNGKKIKAGESVPQLTNNGTEIPCSYCQCLINGRFKCMKDDNXXXXXXXXXXXXXXXXXXXXXXXVEESVFQTCRKQICLKFQENCLKDGLCDGSICECKEPLVFNGTDCINVKECPCLDPITRKQFKVGESWIDATDECRIHLCKGNEIETKEIRKECPILECPEGCIKTIVEERNKCCPICSCNETTTSTKYVTITPTQSSISTAITTKPPNICTFVFCSEYTCENECLNQEGRAQNCNNLVCSSRLKEAFKNETVIFCTRIKQENCKSTSKQTSTVTNISE 2219
            EISFVIKLTPKSNT+VNIVNLEINVNINSIVTITFGKKSDEIVESQYKSRGSEKFEFNFDQTDKNGEQFEYMKVSIRTNVGYTLTVKNLIVKVCYESVSTAQTSAPTQEVTTSVCKEDSTDIITNCLMKKCINGTWTHRKVCLLTCSEKTHKLVENDNQCCECLPISTISIRTTTPVMATTTPFCKPPLIHTFCVKPTCESMCEAQQLSNCTRQECKPGCECPENLFFNGKDCVSRKECMCLDENGGIRKNGEEWTINCKNYVCDGIVTKRIFNDCQGVSLNCPPEFQIMVDCCMVCNITTTTATTPHISVCKFENQTLQVGETVIRKVDFCEDDTCVCNQVGGLTCTRNGDKLRNCKESCSSKKCDGLIVPRNEKCICECNCLPSSSIPPTPCSTYSYKCDLPCDIGDLENLELNQFKKYCNLTNLICGECPSTDFRYIDSATGIQYCLGACCKFNGKKIKAGESVPQLTNNGTEIPCSYCQCLINGRFKCMKDDNCVSTTTKTVTTTSIICPTTCKKIVEESVFQTCRKQICLKFQENCLKDGLCDGSICECKEPLVFNGTDCINVKECPCLDPITRKQFKVGESWIDATDECRIHLCKGNEIETKEIRKECPILECPEGCIKTIVEERNKCCPICSCNETTTSTKYVTITPTQSSISTAITTKPPNICTFVFCSEYTCENECLNQEGRAQNCNNLVCSSRLKEAFKNETVIFCTRIKQENCKSTSKQTSTVTNISE
Sbjct:  344 EISFVIKLTPKSNTKVNIVNLEINVNINSIVTITFGKKSDEIVESQYKSRGSEKFEFNFDQTDKNGEQFEYMKVSIRTNVGYTLTVKNLIVKVCYESVSTAQTSAPTQEVTTSVCKEDSTDIITNCLMKKCINGTWTHRKVCLLTCSEKTHKLVENDNQCCECLPISTISIRTTTPVMATTTPFCKPPLIHTFCVKPTCESMCEAQQLSNCTRQECKPGCECPENLFFNGKDCVSRKECMCLDENGGIRKNGEEWTINCKNYVCDGIVTKRIFNDCQGVSLNCPPEFQIMVDCCMVCNITTTTATTPHISVCKFENQTLQVGETVIRKVDFCEDDTCVCNQVGGLTCTRNGDKLRNCKESCSSKKCDGLIVPRNEKCICECNCLPSSSIPPTPCSTYSYKCDLPCDIGDLENLELNQFKKYCNLTNLICGECPSTDFRYIDSATGIQYCLGACCKFNGKKIKAGESVPQLTNNGTEIPCSYCQCLINGRFKCMKDDNCVSTTTKTVTTTSIICPTTCKKIVEESVFQTCRKQICLKFQENCLKDGLCDGSICECKEPLVFNGTDCINVKECPCLDPITRKQFKVGESWIDATDECRIHLCKGNEIETKEIRKECPILECPEGCIKTIVEERNKCCPICSCNETTTSTKYVTITPTQSSISTAITTKPPNICTFVFCSEYTCENECLNQEGRAQNCNNLVCSSRLKEAFKNETVIFCTRIKQENCKSTSKQTSTVTNISE 1082

HSP 2 Score: 101.293 bits (251), Expect = 1.859e-21
Identity = 73/96 (76.04%), Postives = 85/96 (88.54%), Query Frame = 3

Query:    3 EISFVIKLTPKSXXXXXXXXXXXXXXXXXXXXXXFGKKSDEIVESQYKSRGSEKFEFNFDQTDKNGEQFEYMKVSIRTNVGYTLTVKNLIVKVCYE 290
            EISFVIKLTPKSNTEVNIVNLEINVNINSIVT+TFGKKS+EI++ +YK  G+E  +F F++TDKNGEQFEY+KVS+ T  G  LTVKNL+VKVCYE
Sbjct:  177 EISFVIKLTPKSNTEVNIVNLEINVNINSIVTVTFGKKSEEIIQPEYKKTGTETIKFYFNKTDKNGEQFEYVKVSVITTDGKPLTVKNLLVKVCYE 272

HSP 3 Score: 72.0182 bits (175), Expect = 1.600e-12
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 3

Query: 2010 ICTFVFCSEYTCENECLNQEGRAQNCNNLVCSSRLKEAFKNETVIFCTRIKQENCKSTSKQTSTVT 2207
            ICT++FCSEYTC+ EC+  E R  +C+ L+C  R KE F+N+T I CTR  +ENC STS  +  +T
Sbjct: 6667 ICTYMFCSEYTCKGECVTGESRNVDCSKLICVGRSKEGFRNDTYIVCTRRIEENCVSTSTSSPVLT 6732

HSP 4 Score: 68.9366 bits (167), Expect = 1.450e-11
Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = 3

Query:  123 EIVESQYKSRGSEKFEFNFDQTDKNGEQFEYMKVSIRTNVGYTLTVKNLIVKVCYE 290
            +I+    K  G+E  +F F++TDKNGEQFEY+KVS+ T  G  LTVKNL+VKVCYE
Sbjct:   50 QILSPVRKKTGTETIKFYFNKTDKNGEQFEYVKVSVITTDGKPLTVKNLLVKVCYE 105

HSP 5 Score: 64.6994 bits (156), Expect = 2.672e-10
Identity = 30/63 (47.62%), Postives = 46/63 (73.02%), Query Frame = 3

Query: 2010 ICTFVFCSEYTCENECLNQEGRAQNCNNLVCSSRLKEAFKNETVIFCTRIKQENCKSTSKQTS 2198
            ICT+++CSEYTC+ EC+  E R  +C+ LVC    +EA+KN+T I CT+  +ENC ST+ +++
Sbjct: 6506 ICTYMYCSEYTCKGECVTGESRNVDCSKLVCVGLSEEAYKNDTYIVCTKRIEENCISTTTRST 6568

HSP 6 Score: 51.9878 bits (123), Expect = 2.639e-6
Identity = 27/58 (46.55%), Postives = 35/58 (60.34%), Query Frame = 3

Query: 2010 ICTFVFCSEYTCENECLNQEGRAQNCNNLVCSSRLKEAFKNETVIFCTRIKQENCKST 2183
            IC + +CS YTC   CLN E R ++C N +C + L E FKN+T I C    + NC ST
Sbjct: 1376 ICIYGYCSVYTCNKTCLNYEWR-KDCKNFLCKNPLTEIFKNDTYILCAGKVETNCGST 1432

[Close]

Query:    3 EISFVIKLTPKSXXXXXXXXXXXXXXXXXXXXXXFGKKSDEIVESQYKSRGSEKFEFNFDQTDKNGEQFEYMKVSIRTNVGYTLTVKNLIVKVCYESVSTAQTSAPTQEVTTSVCKEDSTDIITNCLMKKCINGTWTHRKVCLLTCSEKTHKLVENDNQCCECLPXXXXXXXXXXXXXXXXXPFCKPPLIHTFCVKPTCESMCEAQQLSNCTRQECKPGCECPENLFFNGKDCVSRKECMCLDENGGIRKNGEEWTINCKNYVCDGIVTKRIFNDCQGVSLNCPPEFQIMVDCCMVCNIXXXXXXXPHISVCKFENQTLQVGETVIRKVDFCEDDTCVCNQVGGLTCTRNGDKLRNCKESCSSKKCDGLIVPRNEKCICECNCLXXXXXXXXXXXXXXXKCDLPCDIGDLENLELNQFKKYCNLTNLICGECPSTDFRYIDSATGIQYCLGACCKFNGKKIKAGESVPQLTNNGTEIPCSYCQCLINGRFKCMKDDNXXXXXXXXXXXXXXXXXXXXXXXVEESVFQTCRKQICLKFQENCLKDGLCDGSICECKEPLVFNGTDCINVKECPCLDPITRKQFKVGESWIDATDECRIHLCKGNEIETKEIRKECPILECPEGCIKTIVEERNKCCPICSCNETTTSTKYVTITPTQSSISTAITTKPPNICTFVFCSEYTCENECLNQEGRAQNCNNLVCSSRLKEAFKNETVIFCTRIKQENCKSTSKQTSTVTNISE 2219
            EISFVIKLTPKSNT+VNIVNLEINVNINSIVTITFGKKSDEIVESQYKSRGSEKFEFNFDQTDKNGEQFEYMKVSIRTNVGYTLTVKNLIVKVCYESVSTAQTSAPTQEVTTSVCKEDSTDIITNCLMKKCINGTWTHRKVCLLTCSEKTHKLVENDNQCCECLPISTISIRTTTPVMATTTPFCKPPLIHTFCVKPTCESMCEAQQLSNCTRQECKPGCECPENLFFNGKDCVSRKECMCLDENGGIRKNGEEWTINCKNYVCDGIVTKRIFNDCQGVSLNCPPEFQIMVDCCMVCNITTTTATTPHISVCKFENQTLQVGETVIRKVDFCEDDTCVCNQVGGLTCTRNGDKLRNCKESCSSKKCDGLIVPRNEKCICECNCLPSSSIPPTPCSTYSYKCDLPCDIGDLENLELNQFKKYCNLTNLICGECPSTDFRYIDSATGIQYCLGACCKFNGKKIKAGESVPQLTNNGTEIPCSYCQCLINGRFKCMKDDNCVSTTTKTVTTTSIICPTTCKKIVEESVFQTCRKQICLKFQENCLKDGLCDGSICECKEPLVFNGTDCINVKECPCLDPITRKQFKVGESWIDATDECRIHLCKGNEIETKEIRKECPILECPEGCIKTIVEERNKCCPICSCNETTTSTKYVTITPTQSSISTAITTKPPNICTFVFCSEYTCENECLNQEGRAQNCNNLVCSSRLKEAFKNETVIFCTRIKQENCKSTSKQTSTVTNISE
Sbjct:  344 EISFVIKLTPKSNTKVNIVNLEINVNINSIVTITFGKKSDEIVESQYKSRGSEKFEFNFDQTDKNGEQFEYMKVSIRTNVGYTLTVKNLIVKVCYESVSTAQTSAPTQEVTTSVCKEDSTDIITNCLMKKCINGTWTHRKVCLLTCSEKTHKLVENDNQCCECLPISTISIRTTTPVMATTTPFCKPPLIHTFCVKPTCESMCEAQQLSNCTRQECKPGCECPENLFFNGKDCVSRKECMCLDENGGIRKNGEEWTINCKNYVCDGIVTKRIFNDCQGVSLNCPPEFQIMVDCCMVCNITTTTATTPHISVCKFENQTLQVGETVIRKVDFCEDDTCVCNQVGGLTCTRNGDKLRNCKESCSSKKCDGLIVPRNEKCICECNCLPSSSIPPTPCSTYSYKCDLPCDIGDLENLELNQFKKYCNLTNLICGECPSTDFRYIDSATGIQYCLGACCKFNGKKIKAGESVPQLTNNGTEIPCSYCQCLINGRFKCMKDDNCVSTTTKTVTTTSIICPTTCKKIVEESVFQTCRKQICLKFQENCLKDGLCDGSICECKEPLVFNGTDCINVKECPCLDPITRKQFKVGESWIDATDECRIHLCKGNEIETKEIRKECPILECPEGCIKTIVEERNKCCPICSCNETTTSTKYVTITPTQSSISTAITTKPPNICTFVFCSEYTCENECLNQEGRAQNCNNLVCSSRLKEAFKNETVIFCTRIKQENCKSTSKQTSTVTNISE 1082

HSP 2 Score: 101.293 bits (251), Expect = 1.859e-21
Identity = 73/96 (76.04%), Postives = 85/96 (88.54%), Query Frame = 3

Query:    3 EISFVIKLTPKSXXXXXXXXXXXXXXXXXXXXXXFGKKSDEIVESQYKSRGSEKFEFNFDQTDKNGEQFEYMKVSIRTNVGYTLTVKNLIVKVCYE 290
            EISFVIKLTPKSNTEVNIVNLEINVNINSIVT+TFGKKS+EI++ +YK  G+E  +F F++TDKNGEQFEY+KVS+ T  G  LTVKNL+VKVCYE
Sbjct:  177 EISFVIKLTPKSNTEVNIVNLEINVNINSIVTVTFGKKSEEIIQPEYKKTGTETIKFYFNKTDKNGEQFEYVKVSVITTDGKPLTVKNLLVKVCYE 272

HSP 3 Score: 72.0182 bits (175), Expect = 1.600e-12
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 3

Query: 2010 ICTFVFCSEYTCENECLNQEGRAQNCNNLVCSSRLKEAFKNETVIFCTRIKQENCKSTSKQTSTVT 2207
            ICT++FCSEYTC+ EC+  E R  +C+ L+C  R KE F+N+T I CTR  +ENC STS  +  +T
Sbjct: 6667 ICTYMFCSEYTCKGECVTGESRNVDCSKLICVGRSKEGFRNDTYIVCTRRIEENCVSTSTSSPVLT 6732

HSP 4 Score: 68.9366 bits (167), Expect = 1.450e-11
Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = 3

Query:  123 EIVESQYKSRGSEKFEFNFDQTDKNGEQFEYMKVSIRTNVGYTLTVKNLIVKVCYE 290
            +I+    K  G+E  +F F++TDKNGEQFEY+KVS+ T  G  LTVKNL+VKVCYE
Sbjct:   50 QILSPVRKKTGTETIKFYFNKTDKNGEQFEYVKVSVITTDGKPLTVKNLLVKVCYE 105

HSP 5 Score: 64.6994 bits (156), Expect = 2.672e-10
Identity = 30/63 (47.62%), Postives = 46/63 (73.02%), Query Frame = 3

Query: 2010 ICTFVFCSEYTCENECLNQEGRAQNCNNLVCSSRLKEAFKNETVIFCTRIKQENCKSTSKQTS 2198
            ICT+++CSEYTC+ EC+  E R  +C+ LVC    +EA+KN+T I CT+  +ENC ST+ +++
Sbjct: 6506 ICTYMYCSEYTCKGECVTGESRNVDCSKLVCVGLSEEAYKNDTYIVCTKRIEENCISTTTRST 6568

HSP 6 Score: 51.9878 bits (123), Expect = 2.639e-6
Identity = 27/58 (46.55%), Postives = 35/58 (60.34%), Query Frame = 3

Query: 2010 ICTFVFCSEYTCENECLNQEGRAQNCNNLVCSSRLKEAFKNETVIFCTRIKQENCKST 2183
            IC + +CS YTC   CLN E R ++C N +C + L E FKN+T I C    + NC ST
Sbjct: 1376 ICIYGYCSVYTCNKTCLNYEWR-KDCKNFLCKNPLTEIFKNDTYILCAGKVETNCGST 1432

[Close]

Query:    3 EISFVIKLTPKSXXXXXXXXXXXXXXXXXXXXXXFGKKSDEIVESQYKSRGSEKFEFNFDQTDKNGEQFEYMKVSIRTNVGYTLTVKNLIVKVCYESVSTAQTSAPTQEVTTSVCKEDSTDIITNCLMKKCINGTWTHRKVCLLTCSEKTHKLVENDNQCCECLPXXXXXXXXXXXXXXXXXPFCKPPLIHTFCVKPTCESMCEAQQLSNCTRQECKPGCECPENLFFNGKDCVSRKECMCLDENGGIRKNGEEWTINCKNYVCDGIVTKRIFNDCQGVSLNCPPEFQIMVDCCMVCNIXXXXXXXPHISVCKFENQTLQVGETVIRKVDFCEDDTCVCNQVGGLTCTRNGDKLRNCKESCSSKKCDGLIVPRNEKCICECNCLXXXXXXXXXXXXXXXKCDLPCDIGDLENLELNQFKKYCNLTNLICGECPSTDFRYIDSATGIQYCLGACCKFNGKKIKAGESVPQLTNNGTEIPCSYCQCLINGRFKCMKDDNXXXXXXXXXXXXXXXXXXXXXXXVEESVFQTCRKQICLKFQENCLKDGLCDGSICECKEPLVFNGTDCINVKECPCLDPITRKQFKVGESWIDATDECRIHLCKGNEIETKEIRKECPILECPEGCIKTIVEERNKCCPICSCNETTTSTKYVTITPTQSSISTAITTKPPNICTFVFCSEYTCENECLNQEGRAQNCNNLVCSSRLKEAFKNETVIFCTRIKQENCKSTSKQTSTVTNISE 2219
            EISFVIKLTPKSNT+VNIVNLEINVNINSIVTITFGKKSDEIVESQYKSRGSEKFEFNFDQTDKNGEQFEYMKVSIRTNVGYTLTVKNLIVKVCYESVSTAQTSAPTQEVTTSVCKEDSTDIITNCLMKKCINGTWTHRKVCLLTCSEKTHKLVENDNQCCECLPISTISIRTTTPVMATTTPFCKPPLIHTFCVKPTCESMCEAQQLSNCTRQECKPGCECPENLFFNGKDCVSRKECMCLDENGGIRKNGEEWTINCKNYVCDGIVTKRIFNDCQGVSLNCPPEFQIMVDCCMVCNITTTTATTPHISVCKFENQTLQVGETVIRKVDFCEDDTCVCNQVGGLTCTRNGDKLRNCKESCSSKKCDGLIVPRNEKCICECNCLPSSSIPPTPCSTYSYKCDLPCDIGDLENLELNQFKKYCNLTNLICGECPSTDFRYIDSATGIQYCLGACCKFNGKKIKAGESVPQLTNNGTEIPCSYCQCLINGRFKCMKDDNCVSTTTKTVTTTSIICPTTCKKIVEESVFQTCRKQICLKFQENCLKDGLCDGSICECKEPLVFNGTDCINVKECPCLDPITRKQFKVGESWIDATDECRIHLCKGNEIETKEIRKECPILECPEGCIKTIVEERNKCCPICSCNETTTSTKYVTITPTQSSISTAITTKPPNICTFVFCSEYTCENECLNQEGRAQNCNNLVCSSRLKEAFKNETVIFCTRIKQENCKSTSKQTSTVTNISE
Sbjct:  342 EISFVIKLTPKSNTKVNIVNLEINVNINSIVTITFGKKSDEIVESQYKSRGSEKFEFNFDQTDKNGEQFEYMKVSIRTNVGYTLTVKNLIVKVCYESVSTAQTSAPTQEVTTSVCKEDSTDIITNCLMKKCINGTWTHRKVCLLTCSEKTHKLVENDNQCCECLPISTISIRTTTPVMATTTPFCKPPLIHTFCVKPTCESMCEAQQLSNCTRQECKPGCECPENLFFNGKDCVSRKECMCLDENGGIRKNGEEWTINCKNYVCDGIVTKRIFNDCQGVSLNCPPEFQIMVDCCMVCNITTTTATTPHISVCKFENQTLQVGETVIRKVDFCEDDTCVCNQVGGLTCTRNGDKLRNCKESCSSKKCDGLIVPRNEKCICECNCLPSSSIPPTPCSTYSYKCDLPCDIGDLENLELNQFKKYCNLTNLICGECPSTDFRYIDSATGIQYCLGACCKFNGKKIKAGESVPQLTNNGTEIPCSYCQCLINGRFKCMKDDNCVSTTTKTVTTTSIICPTTCKKIVEESVFQTCRKQICLKFQENCLKDGLCDGSICECKEPLVFNGTDCINVKECPCLDPITRKQFKVGESWIDATDECRIHLCKGNEIETKEIRKECPILECPEGCIKTIVEERNKCCPICSCNETTTSTKYVTITPTQSSISTAITTKPPNICTFVFCSEYTCENECLNQEGRAQNCNNLVCSSRLKEAFKNETVIFCTRIKQENCKSTSKQTSTVTNISE 1080

HSP 2 Score: 101.293 bits (251), Expect = 1.875e-21
Identity = 73/96 (76.04%), Postives = 85/96 (88.54%), Query Frame = 3

Query:    3 EISFVIKLTPKSXXXXXXXXXXXXXXXXXXXXXXFGKKSDEIVESQYKSRGSEKFEFNFDQTDKNGEQFEYMKVSIRTNVGYTLTVKNLIVKVCYE 290
            EISFVIKLTPKSNTEVNIVNLEINVNINSIVT+TFGKKS+EI++ +YK  G+E  +F F++TDKNGEQFEY+KVS+ T  G  LTVKNL+VKVCYE
Sbjct:  175 EISFVIKLTPKSNTEVNIVNLEINVNINSIVTVTFGKKSEEIIQPEYKKTGTETIKFYFNKTDKNGEQFEYVKVSVITTDGKPLTVKNLLVKVCYE 270

HSP 3 Score: 72.0182 bits (175), Expect = 1.600e-12
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 3

Query: 2010 ICTFVFCSEYTCENECLNQEGRAQNCNNLVCSSRLKEAFKNETVIFCTRIKQENCKSTSKQTSTVT 2207
            ICT++FCSEYTC+ EC+  E R  +C+ L+C  R KE F+N+T I CTR  +ENC STS  +  +T
Sbjct: 6665 ICTYMFCSEYTCKGECVTGESRNVDCSKLICVGRSKEGFRNDTYIVCTRRIEENCVSTSTSSPVLT 6730

HSP 4 Score: 68.1662 bits (165), Expect = 3.004e-11
Identity = 32/49 (65.31%), Postives = 39/49 (79.59%), Query Frame = 3

Query:  144 KSRGSEKFEFNFDQTDKNGEQFEYMKVSIRTNVGYTLTVKNLIVKVCYE 290
            K  G+E  +F F++TDKNGEQFEY+KVS+ T  G  LTVKNL+VKVCYE
Sbjct:   55 KKTGTETIKFYFNKTDKNGEQFEYVKVSVITTDGKPLTVKNLLVKVCYE 103

HSP 5 Score: 64.6994 bits (156), Expect = 2.672e-10
Identity = 30/63 (47.62%), Postives = 46/63 (73.02%), Query Frame = 3

Query: 2010 ICTFVFCSEYTCENECLNQEGRAQNCNNLVCSSRLKEAFKNETVIFCTRIKQENCKSTSKQTS 2198
            ICT+++CSEYTC+ EC+  E R  +C+ LVC    +EA+KN+T I CT+  +ENC ST+ +++
Sbjct: 6504 ICTYMYCSEYTCKGECVTGESRNVDCSKLVCVGLSEEAYKNDTYIVCTKRIEENCISTTTRST 6566

HSP 6 Score: 51.9878 bits (123), Expect = 2.594e-6
Identity = 27/58 (46.55%), Postives = 35/58 (60.34%), Query Frame = 3

Query: 2010 ICTFVFCSEYTCENECLNQEGRAQNCNNLVCSSRLKEAFKNETVIFCTRIKQENCKST 2183
            IC + +CS YTC   CLN E R ++C N +C + L E FKN+T I C    + NC ST
Sbjct: 1374 ICIYGYCSVYTCNKTCLNYEWR-KDCKNFLCKNPLTEIFKNDTYILCAGKVETNCGST 1430

[Close]

Query:    3 EISFVIKLTPKSXXXXXXXXXXXXXXXXXXXXXXFGKKSDEIVESQYKSRGSEKFEFNFDQTDKNGEQFEYMKVSIRTNVGYTLTVKNLIVKVCYESVSTAQTSAPTQEVTTSVCKEDSTDIITNCLMKKCINGTWTHRKVCLLTCSEKTHKLVENDNQCCECLPXXXXXXXXXXXXXXXXXPFCKPPLIHTFCVKPTCESMCEAQQLSNCTRQECKPGCECPENLFFNGKDCVSRKECMCLDENGGIRKNGEEWTINCKNYVCDGIVTKRIFNDCQGVSLNCPPEFQIMVDCCMVCNIXXXXXXXPHISVCKFENQTLQVGETVIRKVDFCEDDTCVCNQVGGLTCTRNGDKLRNCKESCSSKKCDGLIVPRNEKCICECNCLXXXXXXXXXXXXXXXKCDLPCDIGDLENLELNQFKKYCNLTNLICGECPSTDFRYIDSATGIQYCLGACCKFNGKKIKAGESVPQLTNNGTEIPCSYCQCLINGRFKCMKDDNXXXXXXXXXXXXXXXXXXXXXXXVEESVFQTCRKQICLKFQENCLKDGLCDGSICECKEPLVFNGTDCINVKECPCLDPITRKQFKVGESWIDATDECRIHLCKGNEIETKEIRKECPILECPEGCIKTIVEERNKCCPICSCNETTTSTKYVTITPTQSSISTAITTKPPNICTFVFCSEYTCENECLNQEGRAQNCNNLVCSSRLKEAFKNETVIFCTRIKQENCKSTSKQTSTVTNISE 2219
            EISFVIKLTPKSNT+VNIVNLEINVNINSIVTITFGKKSDEIVESQYKSRGSEKFEFNFDQTDKNGEQFEYMKVSIRTNVGYTLTVKNLIVKVCYESVSTAQTSAPTQEVTTSVCKEDSTDIITNCLMKKCINGTWTHRKVCLLTCSEKTHKLVENDNQCCECLPISTISIRTTTPVMATTTPFCKPPLIHTFCVKPTCESMCEAQQLSNCTRQECKPGCECPENLFFNGKDCVSRKECMCLDENGGIRKNGEEWTINCKNYVCDGIVTKRIFNDCQGVSLNCPPEFQIMVDCCMVCNITTTTATTPHISVCKFENQTLQVGETVIRKVDFCEDDTCVCNQVGGLTCTRNGDKLRNCKESCSSKKCDGLIVPRNEKCICECNCLPSSSIPPTPCSTYSYKCDLPCDIGDLENLELNQFKKYCNLTNLICGECPSTDFRYIDSATGIQYCLGACCKFNGKKIKAGESVPQLTNNGTEIPCSYCQCLINGRFKCMKDDNCVSTTTKTVTTTSIICPTTCKKIVEESVFQTCRKQICLKFQENCLKDGLCDGSICECKEPLVFNGTDCINVKECPCLDPITRKQFKVGESWIDATDECRIHLCKGNEIETKEIRKECPILECPEGCIKTIVEERNKCCPICSCNETTTSTKYVTITPTQSSISTAITTKPPNICTFVFCSEYTCENECLNQEGRAQNCNNLVCSSRLKEAFKNETVIFCTRIKQENCKSTSKQTSTVTNISE
Sbjct:  342 EISFVIKLTPKSNTKVNIVNLEINVNINSIVTITFGKKSDEIVESQYKSRGSEKFEFNFDQTDKNGEQFEYMKVSIRTNVGYTLTVKNLIVKVCYESVSTAQTSAPTQEVTTSVCKEDSTDIITNCLMKKCINGTWTHRKVCLLTCSEKTHKLVENDNQCCECLPISTISIRTTTPVMATTTPFCKPPLIHTFCVKPTCESMCEAQQLSNCTRQECKPGCECPENLFFNGKDCVSRKECMCLDENGGIRKNGEEWTINCKNYVCDGIVTKRIFNDCQGVSLNCPPEFQIMVDCCMVCNITTTTATTPHISVCKFENQTLQVGETVIRKVDFCEDDTCVCNQVGGLTCTRNGDKLRNCKESCSSKKCDGLIVPRNEKCICECNCLPSSSIPPTPCSTYSYKCDLPCDIGDLENLELNQFKKYCNLTNLICGECPSTDFRYIDSATGIQYCLGACCKFNGKKIKAGESVPQLTNNGTEIPCSYCQCLINGRFKCMKDDNCVSTTTKTVTTTSIICPTTCKKIVEESVFQTCRKQICLKFQENCLKDGLCDGSICECKEPLVFNGTDCINVKECPCLDPITRKQFKVGESWIDATDECRIHLCKGNEIETKEIRKECPILECPEGCIKTIVEERNKCCPICSCNETTTSTKYVTITPTQSSISTAITTKPPNICTFVFCSEYTCENECLNQEGRAQNCNNLVCSSRLKEAFKNETVIFCTRIKQENCKSTSKQTSTVTNISE 1080

HSP 2 Score: 101.293 bits (251), Expect = 1.843e-21
Identity = 73/96 (76.04%), Postives = 85/96 (88.54%), Query Frame = 3

Query:    3 EISFVIKLTPKSXXXXXXXXXXXXXXXXXXXXXXFGKKSDEIVESQYKSRGSEKFEFNFDQTDKNGEQFEYMKVSIRTNVGYTLTVKNLIVKVCYE 290
            EISFVIKLTPKSNTEVNIVNLEINVNINSIVT+TFGKKS+EI++ +YK  G+E  +F F++TDKNGEQFEY+KVS+ T  G  LTVKNL+VKVCYE
Sbjct:  175 EISFVIKLTPKSNTEVNIVNLEINVNINSIVTVTFGKKSEEIIQPEYKKTGTETIKFYFNKTDKNGEQFEYVKVSVITTDGKPLTVKNLLVKVCYE 270

HSP 3 Score: 72.0182 bits (175), Expect = 1.628e-12
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 3

Query: 2010 ICTFVFCSEYTCENECLNQEGRAQNCNNLVCSSRLKEAFKNETVIFCTRIKQENCKSTSKQTSTVT 2207
            ICT++FCSEYTC+ EC+  E R  +C+ L+C  R KE F+N+T I CTR  +ENC STS  +  +T
Sbjct: 6646 ICTYMFCSEYTCKGECVTGESRNVDCSKLICVGRSKEGFRNDTYIVCTRRIEENCVSTSTSSPVLT 6711

HSP 4 Score: 68.1662 bits (165), Expect = 2.978e-11
Identity = 32/49 (65.31%), Postives = 39/49 (79.59%), Query Frame = 3

Query:  144 KSRGSEKFEFNFDQTDKNGEQFEYMKVSIRTNVGYTLTVKNLIVKVCYE 290
            K  G+E  +F F++TDKNGEQFEY+KVS+ T  G  LTVKNL+VKVCYE
Sbjct:   55 KKTGTETIKFYFNKTDKNGEQFEYVKVSVITTDGKPLTVKNLLVKVCYE 103

HSP 5 Score: 65.0846 bits (157), Expect = 2.627e-10
Identity = 30/63 (47.62%), Postives = 46/63 (73.02%), Query Frame = 3

Query: 2010 ICTFVFCSEYTCENECLNQEGRAQNCNNLVCSSRLKEAFKNETVIFCTRIKQENCKSTSKQTS 2198
            ICT+++CSEYTC+ EC+  E R  +C+ LVC    +EA+KN+T I CT+  +ENC ST+ +++
Sbjct: 6485 ICTYMYCSEYTCKGECVTGESRNVDCSKLVCVGLSEEAYKNDTYIVCTKRIEENCISTTTRST 6547

HSP 6 Score: 51.6026 bits (122), Expect = 2.661e-6
Identity = 27/58 (46.55%), Postives = 35/58 (60.34%), Query Frame = 3

Query: 2010 ICTFVFCSEYTCENECLNQEGRAQNCNNLVCSSRLKEAFKNETVIFCTRIKQENCKST 2183
            IC + +CS YTC   CLN E R ++C N +C + L E FKN+T I C    + NC ST
Sbjct: 1374 ICIYGYCSVYTCNKTCLNYEWR-KDCKNFLCKNPLTEIFKNDTYILCAGKVETNCGST 1430

[Close]

BLAST of SCO-spondin vs. Planmine SMEST
Match: SMESG000025545.1 (SMESG000025545.1)

HSP 1 Score: 1317.75 bits (3409), Expect = 0.000e+0
Identity = 738/739 (99.86%), Postives = 739/739 (100.00%), Query Frame = 3

Query:    3 EISFVIKLTPKSXXXXXXXXXXXXXXXXXXXXXXFGKKSDEIVESQYKSRGSEKFEFNFDQTDKNGEQFEYMKVSIRTNVGYTLTVKNLIVKVCYESVSTAQTSAPTQEVTTSVCKEDSTDIITNCLMKKCINGTWTHRKVCLLTCSEKTHKLVENDNQCCECLPXXXXXXXXXXXXXXXXXPFCKPPLIHTFCVKPTCESMCEAQQLSNCTRQECKPGCECPENLFFNGKDCVSRKECMCLDENGGIRKNGEEWTINCKNYVCDGIVTKRIFNDCQGVSLNCPPEFQIMVDCCMVCNIXXXXXXXPHISVCKFENQTLQVGETVIRKVDFCEDDTCVCNQVGGLTCTRNGDKLRNCKESCSSKKCDGLIVPRNEKCICECNCLXXXXXXXXXXXXXXXKCDLPCDIGDLENLELNQFKKYCNLTNLICGECPSTDFRYIDSATGIQYCLGACCKFNGKKIKAGESVPQLTNNGTEIPCSYCQCLINGRFKCMKDDNXXXXXXXXXXXXXXXXXXXXXXXVEESVFQTCRKQICLKFQENCLKDGLCDGSICECKEPLVFNGTDCINVKECPCLDPITRKQFKVGESWIDATDECRIHLCKGNEIETKEIRKECPILECPEGCIKTIVEERNKCCPICSCNETTTSTKYVTITPTQSSISTAITTKPPNICTFVFCSEYTCENECLNQEGRAQNCNNLVCSSRLKEAFKNETVIFCTRIKQENCKSTSKQTSTVTNISE 2219
            EISFVIKLTPKSNT+VNIVNLEINVNINSIVTITFGKKSDEIVESQYKSRGSEKFEFNFDQTDKNGEQFEYMKVSIRTNVGYTLTVKNLIVKVCYESVSTAQTSAPTQEVTTSVCKEDSTDIITNCLMKKCINGTWTHRKVCLLTCSEKTHKLVENDNQCCECLPISTISIRTTTPVMATTTPFCKPPLIHTFCVKPTCESMCEAQQLSNCTRQECKPGCECPENLFFNGKDCVSRKECMCLDENGGIRKNGEEWTINCKNYVCDGIVTKRIFNDCQGVSLNCPPEFQIMVDCCMVCNITTTTATTPHISVCKFENQTLQVGETVIRKVDFCEDDTCVCNQVGGLTCTRNGDKLRNCKESCSSKKCDGLIVPRNEKCICECNCLPSSSIPPTPCSTYSYKCDLPCDIGDLENLELNQFKKYCNLTNLICGECPSTDFRYIDSATGIQYCLGACCKFNGKKIKAGESVPQLTNNGTEIPCSYCQCLINGRFKCMKDDNCVSTTTKTVTTTSIICPTTCKKIVEESVFQTCRKQICLKFQENCLKDGLCDGSICECKEPLVFNGTDCINVKECPCLDPITRKQFKVGESWIDATDECRIHLCKGNEIETKEIRKECPILECPEGCIKTIVEERNKCCPICSCNETTTSTKYVTITPTQSSISTAITTKPPNICTFVFCSEYTCENECLNQEGRAQNCNNLVCSSRLKEAFKNETVIFCTRIKQENCKSTSKQTSTVTNISE
Sbjct:  344 EISFVIKLTPKSNTKVNIVNLEINVNINSIVTITFGKKSDEIVESQYKSRGSEKFEFNFDQTDKNGEQFEYMKVSIRTNVGYTLTVKNLIVKVCYESVSTAQTSAPTQEVTTSVCKEDSTDIITNCLMKKCINGTWTHRKVCLLTCSEKTHKLVENDNQCCECLPISTISIRTTTPVMATTTPFCKPPLIHTFCVKPTCESMCEAQQLSNCTRQECKPGCECPENLFFNGKDCVSRKECMCLDENGGIRKNGEEWTINCKNYVCDGIVTKRIFNDCQGVSLNCPPEFQIMVDCCMVCNITTTTATTPHISVCKFENQTLQVGETVIRKVDFCEDDTCVCNQVGGLTCTRNGDKLRNCKESCSSKKCDGLIVPRNEKCICECNCLPSSSIPPTPCSTYSYKCDLPCDIGDLENLELNQFKKYCNLTNLICGECPSTDFRYIDSATGIQYCLGACCKFNGKKIKAGESVPQLTNNGTEIPCSYCQCLINGRFKCMKDDNCVSTTTKTVTTTSIICPTTCKKIVEESVFQTCRKQICLKFQENCLKDGLCDGSICECKEPLVFNGTDCINVKECPCLDPITRKQFKVGESWIDATDECRIHLCKGNEIETKEIRKECPILECPEGCIKTIVEERNKCCPICSCNETTTSTKYVTITPTQSSISTAITTKPPNICTFVFCSEYTCENECLNQEGRAQNCNNLVCSSRLKEAFKNETVIFCTRIKQENCKSTSKQTSTVTNISE 1082

HSP 2 Score: 101.293 bits (251), Expect = 1.891e-21
Identity = 73/96 (76.04%), Postives = 85/96 (88.54%), Query Frame = 3

Query:    3 EISFVIKLTPKSXXXXXXXXXXXXXXXXXXXXXXFGKKSDEIVESQYKSRGSEKFEFNFDQTDKNGEQFEYMKVSIRTNVGYTLTVKNLIVKVCYE 290
            EISFVIKLTPKSNTEVNIVNLEINVNINSIVT+TFGKKS+EI++ +YK  G+E  +F F++TDKNGEQFEY+KVS+ T  G  LTVKNL+VKVCYE
Sbjct:  177 EISFVIKLTPKSNTEVNIVNLEINVNINSIVTVTFGKKSEEIIQPEYKKTGTETIKFYFNKTDKNGEQFEYVKVSVITTDGKPLTVKNLLVKVCYE 272

HSP 3 Score: 72.0182 bits (175), Expect = 1.713e-12
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 3

Query: 2010 ICTFVFCSEYTCENECLNQEGRAQNCNNLVCSSRLKEAFKNETVIFCTRIKQENCKSTSKQTSTVT 2207
            ICT++FCSEYTC+ EC+  E R  +C+ L+C  R KE F+N+T I CTR  +ENC STS  +  +T
Sbjct: 6687 ICTYMFCSEYTCKGECVTGESRNVDCSKLICVGRSKEGFRNDTYIVCTRRIEENCVSTSTSSPVLT 6752

HSP 4 Score: 68.9366 bits (167), Expect = 1.462e-11
Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = 3

Query:  123 EIVESQYKSRGSEKFEFNFDQTDKNGEQFEYMKVSIRTNVGYTLTVKNLIVKVCYE 290
            +I+    K  G+E  +F F++TDKNGEQFEY+KVS+ T  G  LTVKNL+VKVCYE
Sbjct:   50 QILSPVRKKTGTETIKFYFNKTDKNGEQFEYVKVSVITTDGKPLTVKNLLVKVCYE 105

HSP 5 Score: 64.6994 bits (156), Expect = 2.788e-10
Identity = 30/63 (47.62%), Postives = 46/63 (73.02%), Query Frame = 3

Query: 2010 ICTFVFCSEYTCENECLNQEGRAQNCNNLVCSSRLKEAFKNETVIFCTRIKQENCKSTSKQTS 2198
            ICT+++CSEYTC+ EC+  E R  +C+ LVC    +EA+KN+T I CT+  +ENC ST+ +++
Sbjct: 6526 ICTYMYCSEYTCKGECVTGESRNVDCSKLVCVGLSEEAYKNDTYIVCTKRIEENCISTTTRST 6588

HSP 6 Score: 51.6026 bits (122), Expect = 2.776e-6
Identity = 27/58 (46.55%), Postives = 35/58 (60.34%), Query Frame = 3

Query: 2010 ICTFVFCSEYTCENECLNQEGRAQNCNNLVCSSRLKEAFKNETVIFCTRIKQENCKST 2183
            IC + +CS YTC   CLN E R ++C N +C + L E FKN+T I C    + NC ST
Sbjct: 1376 ICIYGYCSVYTCNKTCLNYEWR-KDCKNFLCKNPLTEIFKNDTYILCAGKVETNCGST 1432

The following BLAST results are available for this feature:

BLAST of SCO-spondin vs. Ensembl Human
BLAST of SCO-spondin vs. Ensembl Celegans
BLAST of SCO-spondin vs. Ensembl Fly
BLAST of SCO-spondin vs. Ensembl Zebrafish
BLAST of SCO-spondin vs. Ensembl Xenopus
BLAST of SCO-spondin vs. Ensembl Mouse
BLAST of SCO-spondin vs. UniProt/SwissProt
BLAST of SCO-spondin vs. TrEMBL
BLAST of SCO-spondin vs. Ensembl Cavefish
BLAST of SCO-spondin vs. Ensembl Sea Lamprey
BLAST of SCO-spondin vs. Ensembl Yeast
BLAST of SCO-spondin vs. Ensembl Nematostella
BLAST of SCO-spondin vs. Ensembl Medaka
BLAST of SCO-spondin vs. Planmine SMEST

BLAST of SCO-spondin vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SCO-spondin vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SCO-spondin vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SCO-spondin vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SCO-spondin vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SCO-spondin vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SCO-spondin vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SCO-spondin vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A1I8G0U9	6.837e-23	26.66	Uncharacterized protein OS=Macrostomum lignano OX=...	[more]
A0A267DLR6	8.945e-23	25.77	Uncharacterized protein (Fragment) OS=Macrostomum ...	[more]
A0A267GUZ7	4.124e-22	26.02	Uncharacterized protein OS=Macrostomum lignano OX=...	[more]
A0A1I8GY38	1.916e-17	26.55	Uncharacterized protein OS=Macrostomum lignano OX=...	[more]
A0A0L8FZQ8	7.223e-7	32.54	Uncharacterized protein (Fragment) OS=Octopus bima...	[more]

BLAST of SCO-spondin vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SCO-spondin vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1


Match Name	E-value	Identity	Description
ENSPMAT00000000981.1	4.284e-6	34.25	pep scaffold:Pmarinus_7.0:GL476384:615201:646381:-...	[more]

BLAST of SCO-spondin vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SCO-spondin vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SCO-spondin vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SCO-spondin vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000025545.1	1.859e-21	99.86	SMESG000025545.1	[more]
SMESG000025545.1	1.859e-21	99.86	SMESG000025545.1	[more]
SMESG000025545.1	1.875e-21	99.86	SMESG000025545.1	[more]
SMESG000025545.1	1.843e-21	99.86	SMESG000025545.1	[more]
SMESG000025545.1	1.891e-21	99.86	SMESG000025545.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30032818 ID=SMED30032818|Name=SCO-spondin|organism=Schmidtea mediterranea sexual|type=transcript|length=2338bp
ATGAAATCAGCTTTGTTATCAAATTGACACCGAAATCAAACACAGAAGTG
AACATTGTCAACCTAGAAATCAATGTCAACATAAACTCAATAGTGACAAT
TACATTCGGAAAGAAGAGTGATGAAATCGTCGAATCACAATATAAATCAC
GGGGCTCAGAAAAATTTGAATTTAATTTCGACCAAACCGACAAAAACGGA
GAACAATTTGAATACATGAAAGTTTCGATTCGAACAAATGTTGGATATAC
TCTGACAGTCAAAAATCTGATAGTGAAAGTTTGCTATGAGAGTGTATCGA
CAGCTCAAACCTCTGCTCCTACTCAGGAAGTCACAACATCGGTTTGCAAG
GAAGACTCCACCGATATAATCACTAACTGTTTGATGAAAAAATGCATTAA
CGGGACTTGGACCCATCGTAAAGTCTGCTTACTGACCTGTTCTGAGAAAA
CTCATAAATTGGTTGAAAATGATAATCAATGCTGCGAATGTTTGCCTATA
TCCACAATTTCAATCCGAACCACCACGCCTGTAATGGCAACCACCACTCC
ATTCTGTAAACCACCATTAATTCACACATTCTGTGTAAAACCGACTTGTG
AATCCATGTGCGAAGCTCAACAACTCTCAAATTGTACGCGACAAGAGTGC
AAACCTGGGTGTGAGTGTCCTGAAAACCTGTTTTTCAACGGCAAGGATTG
TGTCTCAAGAAAAGAATGCATGTGCTTAGATGAAAATGGTGGAATTAGAA
AGAATGGTGAAGAATGGACAATAAATTGCAAGAATTATGTATGCGATGGT
ATTGTGACCAAACGAATATTCAATGATTGTCAAGGAGTATCTCTAAATTG
CCCCCCAGAATTCCAAATTATGGTAGATTGCTGCATGGTATGTAACATTA
CCACGACTACGGCAACTACTCCTCACATTTCTGTATGCAAATTTGAAAAT
CAAACTTTACAAGTTGGTGAAACAGTAATACGAAAAGTTGATTTCTGTGA
GGACGACACTTGCGTTTGCAACCAAGTTGGAGGATTAACCTGTACCAGAA
ATGGAGACAAACTCCGAAATTGCAAAGAAAGTTGCTCATCTAAAAAATGT
GACGGATTGATCGTACCGAGAAATGAAAAATGTATCTGCGAATGCAATTG
CTTGCCATCATCCAGTATTCCCCCCACTCCATGCTCAACATATAGCTACA
AGTGTGATTTGCCTTGCGACATCGGAGATTTGGAAAACCTGGAATTGAAT
CAGTTCAAAAAATATTGTAATCTCACCAATCTTATTTGCGGTGAATGCCC
ATCTACCGATTTTCGCTACATTGACAGTGCCACAGGAATTCAATACTGTC
TTGGCGCATGCTGTAAATTTAATGGAAAGAAAATTAAAGCCGGTGAAAGT
GTACCTCAATTAACAAATAATGGCACTGAGATTCCGTGTAGCTATTGCCA
ATGTCTCATTAATGGCAGATTTAAATGCATGAAAGATGACAACTGTGTAT
CAACAACTACAAAAACTGTGACTACTACATCTATCATTTGTCCAACTACA
TGTAAGAAAATCGTCGAAGAATCAGTTTTTCAAACTTGTAGAAAACAAAT
TTGCCTCAAATTTCAGGAAAATTGTTTGAAAGATGGCTTATGTGATGGAT
CAATATGCGAATGCAAAGAACCTCTTGTTTTTAATGGAACAGATTGCATC
AATGTCAAAGAATGCCCATGCTTAGATCCAATTACTAGAAAGCAATTTAA
AGTTGGAGAATCATGGATAGATGCAACGGACGAATGCAGAATTCATTTAT
GTAAAGGAAACGAAATAGAAACCAAAGAAATACGAAAAGAATGTCCCATA
TTAGAATGTCCAGAAGGGTGCATTAAAACCATTGTTGAAGAGAGAAATAA
ATGTTGTCCAATATGCTCATGTAATGAAACTACAACGTCTACAAAATATG
TCACAATTACACCAACTCAATCTTCGATATCAACAGCAATCACAACCAAA
CCACCAAATATTTGCACATTCGTGTTCTGTTCAGAGTATACTTGTGAAAA
TGAATGCCTAAATCAGGAAGGAAGAGCACAAAATTGTAATAATCTAGTCT
GTTCTAGTCGTTTAAAAGAAGCCTTTAAAAACGAAACCGTAATATTTTGT
ACTCGGATTAAACAAGAAAATTGTAAATCAACATCAAAACAAACAAGCAC
AGTTACAAATATTTCAGAAACAACCAAAACTTCAACCGTTTTTCCACCAA
CCATCACAACAACATCAACAGATGTTCCATTAACCACCACAACGATCTCA
ACAAGTACTCAAACGATCACCACAGCAACATCAACAGC

protein sequence of SMED30032818-orf-1

>SMED30032818-orf-1 ID=SMED30032818-orf-1|Name=SMED30032818-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=778bp
EISFVIKLTPKSNTEVNIVNLEINVNINSIVTITFGKKSDEIVESQYKSR
GSEKFEFNFDQTDKNGEQFEYMKVSIRTNVGYTLTVKNLIVKVCYESVST
AQTSAPTQEVTTSVCKEDSTDIITNCLMKKCINGTWTHRKVCLLTCSEKT
HKLVENDNQCCECLPISTISIRTTTPVMATTTPFCKPPLIHTFCVKPTCE
SMCEAQQLSNCTRQECKPGCECPENLFFNGKDCVSRKECMCLDENGGIRK
NGEEWTINCKNYVCDGIVTKRIFNDCQGVSLNCPPEFQIMVDCCMVCNIT
TTTATTPHISVCKFENQTLQVGETVIRKVDFCEDDTCVCNQVGGLTCTRN
GDKLRNCKESCSSKKCDGLIVPRNEKCICECNCLPSSSIPPTPCSTYSYK
CDLPCDIGDLENLELNQFKKYCNLTNLICGECPSTDFRYIDSATGIQYCL
GACCKFNGKKIKAGESVPQLTNNGTEIPCSYCQCLINGRFKCMKDDNCVS
TTTKTVTTTSIICPTTCKKIVEESVFQTCRKQICLKFQENCLKDGLCDGS
ICECKEPLVFNGTDCINVKECPCLDPITRKQFKVGESWIDATDECRIHLC
KGNEIETKEIRKECPILECPEGCIKTIVEERNKCCPICSCNETTTSTKYV
TITPTQSSISTAITTKPPNICTFVFCSEYTCENECLNQEGRAQNCNNLVC
SSRLKEAFKNETVIFCTRIKQENCKSTSKQTSTVTNISETTKTSTVFPPT
ITTTSTDVPLTTTTISTSTQTITTATST

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **molecular function**
Term	Definition
GO:0004930	G-protein coupled receptor activity
GO:0050840	extracellular matrix binding

Vocabulary: **biological process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway
GO:0007399	nervous system development
GO:0030154	cell differentiation
GO:0007155	cell adhesion
GO:0007339	binding of sperm to zona pellucida

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000020	protonephridia
PLANA:0000418	head
PLANA:0000420	parapharyngeal region
PLANA:0002075	pigment cell

Vocabulary: **cellular component**
Term	Definition
GO:0005886	plasma membrane
GO:0016020	membrane
GO:0016021	integral component of membrane

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:2.10.25.10		coord: 172..286 e-value: 2.8E-9 score: 39.2

Main menu

SCO-spondin

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 41

Owlery

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