SMED30032788
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30032788 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 7
Alignments
SMED30032788 aligns in the following genomic locations:
Homology
BLAST of SMED30032788 vs. Ensembl Celegans
Match: pig-1 (Maternal embryonic leucine zipper kinase [Source:UniProtKB/Swiss-Prot;Acc:U4PR86]) HSP 1 Score: 47.3654 bits (111), Expect = 1.747e-8 Identity = 42/156 (26.92%), Postives = 80/156 (51.28%), Query Frame = -3 Query: 377 ELLFLEQLSQYEYVPKLITYIDENNWSTVVMEYLDGDWMDLHDYTMQFPY--ESPXXXXXXXXXXXXXKMSEIGYYHRDIKPKNIMVNEETLEVKLIDL------EDVLFDQYDIPICNSTLGTLGFQSPEIFGDVPYNLKQSLVCNIGCVAYFCL 820 E+ L LS ++ + +L YI+ + +VMEY G ++ DY ++ ES + + L+ + + GY HRD+KP+N+++ E+ L +KLID E D++++ C G+ + +PE+ + Y ++ V ++G + Y L Sbjct: 57 EMDALRNLS-HQNICRLYHYIETEDKFFIVMEYCSGG--EMFDYIVRKERLEESEARHFFRQLVSAIAFVHSQGYAHRDLKPENLLLTED-LHLKLIDFGLCAKTEKGRIDKHNLDTC---CGSPAYAAPELIQGLQYKGNEADVWSMGILLYTLL 205 HSP 2 Score: 29.261 bits (64), Expect = 1.747e-8 Identity = 11/33 (33.33%), Postives = 19/33 (57.58%), Query Frame = -2 Query: 264 SELARSFITDCIKLDPDERIEFGDLLSHDWQHH 362 S L++ + +++ P+ RI LL HDW +H Sbjct: 235 SPLSKQLLRAMLQVVPERRISVKKLLEHDWLNH 267
BLAST of SMED30032788 vs. Ensembl Celegans
Match: pig-1 (Maternal embryonic leucine zipper kinase [Source:UniProtKB/Swiss-Prot;Acc:U4PR86]) HSP 1 Score: 47.3654 bits (111), Expect = 1.761e-8 Identity = 42/156 (26.92%), Postives = 80/156 (51.28%), Query Frame = -3 Query: 377 ELLFLEQLSQYEYVPKLITYIDENNWSTVVMEYLDGDWMDLHDYTMQFPY--ESPXXXXXXXXXXXXXKMSEIGYYHRDIKPKNIMVNEETLEVKLIDL------EDVLFDQYDIPICNSTLGTLGFQSPEIFGDVPYNLKQSLVCNIGCVAYFCL 820 E+ L LS ++ + +L YI+ + +VMEY G ++ DY ++ ES + + L+ + + GY HRD+KP+N+++ E+ L +KLID E D++++ C G+ + +PE+ + Y ++ V ++G + Y L Sbjct: 57 EMDALRNLS-HQNICRLYHYIETEDKFFIVMEYCSGG--EMFDYIVRKERLEESEARHFFRQLVSAIAFVHSQGYAHRDLKPENLLLTED-LHLKLIDFGLCAKTEKGRIDKHNLDTC---CGSPAYAAPELIQGLQYKGNEADVWSMGILLYTLL 205 HSP 2 Score: 29.261 bits (64), Expect = 1.761e-8 Identity = 11/33 (33.33%), Postives = 19/33 (57.58%), Query Frame = -2 Query: 264 SELARSFITDCIKLDPDERIEFGDLLSHDWQHH 362 S L++ + +++ P+ RI LL HDW +H Sbjct: 235 SPLSKQLLRAMLQVVPERRISVKKLLEHDWLNH 267
BLAST of SMED30032788 vs. Ensembl Celegans
Match: pig-1 (Maternal embryonic leucine zipper kinase [Source:UniProtKB/Swiss-Prot;Acc:U4PR86]) HSP 1 Score: 47.3654 bits (111), Expect = 1.775e-8 Identity = 42/156 (26.92%), Postives = 80/156 (51.28%), Query Frame = -3 Query: 377 ELLFLEQLSQYEYVPKLITYIDENNWSTVVMEYLDGDWMDLHDYTMQFPY--ESPXXXXXXXXXXXXXKMSEIGYYHRDIKPKNIMVNEETLEVKLIDL------EDVLFDQYDIPICNSTLGTLGFQSPEIFGDVPYNLKQSLVCNIGCVAYFCL 820 E+ L LS ++ + +L YI+ + +VMEY G ++ DY ++ ES + + L+ + + GY HRD+KP+N+++ E+ L +KLID E D++++ C G+ + +PE+ + Y ++ V ++G + Y L Sbjct: 57 EMDALRNLS-HQNICRLYHYIETEDKFFIVMEYCSGG--EMFDYIVRKERLEESEARHFFRQLVSAIAFVHSQGYAHRDLKPENLLLTED-LHLKLIDFGLCAKTEKGRIDKHNLDTC---CGSPAYAAPELIQGLQYKGNEADVWSMGILLYTLL 205 HSP 2 Score: 29.261 bits (64), Expect = 1.775e-8 Identity = 11/33 (33.33%), Postives = 19/33 (57.58%), Query Frame = -2 Query: 264 SELARSFITDCIKLDPDERIEFGDLLSHDWQHH 362 S L++ + +++ P+ RI LL HDW +H Sbjct: 235 SPLSKQLLRAMLQVVPERRISVKKLLEHDWLNH 267
BLAST of SMED30032788 vs. Ensembl Celegans
Match: pig-1 (Maternal embryonic leucine zipper kinase [Source:UniProtKB/Swiss-Prot;Acc:U4PR86]) HSP 1 Score: 47.3654 bits (111), Expect = 1.863e-8 Identity = 42/156 (26.92%), Postives = 80/156 (51.28%), Query Frame = -3 Query: 377 ELLFLEQLSQYEYVPKLITYIDENNWSTVVMEYLDGDWMDLHDYTMQFPY--ESPXXXXXXXXXXXXXKMSEIGYYHRDIKPKNIMVNEETLEVKLIDL------EDVLFDQYDIPICNSTLGTLGFQSPEIFGDVPYNLKQSLVCNIGCVAYFCL 820 E+ L LS ++ + +L YI+ + +VMEY G ++ DY ++ ES + + L+ + + GY HRD+KP+N+++ E+ L +KLID E D++++ C G+ + +PE+ + Y ++ V ++G + Y L Sbjct: 57 EMDALRNLS-HQNICRLYHYIETEDKFFIVMEYCSGG--EMFDYIVRKERLEESEARHFFRQLVSAIAFVHSQGYAHRDLKPENLLLTED-LHLKLIDFGLCAKTEKGRIDKHNLDTC---CGSPAYAAPELIQGLQYKGNEADVWSMGILLYTLL 205 HSP 2 Score: 29.261 bits (64), Expect = 1.863e-8 Identity = 11/33 (33.33%), Postives = 19/33 (57.58%), Query Frame = -2 Query: 264 SELARSFITDCIKLDPDERIEFGDLLSHDWQHH 362 S L++ + +++ P+ RI LL HDW +H Sbjct: 235 SPLSKQLLRAMLQVVPERRISVKKLLEHDWLNH 267
BLAST of SMED30032788 vs. Ensembl Celegans
Match: nekl-2 (Serine/threonine-protein kinase nekl-2 [Source:UniProtKB/Swiss-Prot;Acc:O01775]) HSP 1 Score: 49.6766 bits (117), Expect = 1.008e-6 Identity = 44/148 (29.73%), Postives = 71/148 (47.97%), Query Frame = -3 Query: 374 PKLITYIDE---NNWSTVVMEYLDG--------DWMDLHDYTMQ--FPYESPXXXXXXXXXXXXXKMSEIGYYHRDIKPKNIMVNEETLEVKLIDLEDVLFDQYDIPICNSTLGTLGFQSPEIFGDVPYNLKQSLVCNIGCVAYFCLK 778 P +I YID +N +VM+Y +G D + D M+ FP E + ++I + M + HRD+KP+NI++N +KL D + + ++ +GT + SPEI PYN K + ++GCV Y L+ Sbjct: 63 PLIIGYIDSFIMDNQLGIVMQYAEGGTLERLINDQRAIKDSNMREYFP-EKTVLDYFTQILIALNHMHQKNIVHRDLKPQNILMNRRKTVLKLSDF-GISKELGTKSAASTVIGTPNYLSPEICESRPYNQKSDM-WSLGCVLYELLQ 207
BLAST of SMED30032788 vs. Ensembl Fly
Match: fu (gene:FBgn0001079 transcript:FBtr0074602) HSP 1 Score: 43.5134 bits (101), Expect = 9.490e-6 Identity = 25/87 (28.74%), Postives = 44/87 (50.57%), Query Frame = -3 Query: 362 HRDIKPKNIMVNEETLEVKLIDLEDVLFDQYDIPICNSTLGTLGFQSPEIFGDVPYNLKQSLVCNIGCVAY--------FCLKSIFH 598 HRD+KP+N+++ ++ + KL D + S GT + +PE+ + PY+ + + ++GC+AY FC SI H Sbjct: 123 HRDLKPQNVLL-DKNMHAKLCDFGLARNMTLGTHVLTSIKGTPLYMAPELLAEQPYD-HHADMWSLGCIAYESMAGQPPFCASSILH 207 HSP 2 Score: 24.2534 bits (51), Expect = 9.490e-6 Identity = 13/33 (39.39%), Postives = 19/33 (57.58%), Query Frame = -2 Query: 273 NLSSELARSFITDCIKLDPDERIEFGDLLSHDW 371 L+SE RSF+ ++ DP RI + LL H + Sbjct: 222 TLTSE-CRSFLQGLLEKDPGLRISWTQLLCHPF 253
BLAST of SMED30032788 vs. Ensembl Zebrafish
Match: pimr68 (Pim proto-oncogene, serine/threonine kinase, related 68 [Source:ZFIN;Acc:ZDB-GENE-070912-431]) HSP 1 Score: 44.2838 bits (103), Expect = 2.268e-8 Identity = 31/87 (35.63%), Postives = 43/87 (49.43%), Query Frame = -3 Query: 365 GYYHRDIKPKNIMVNEETLEVKLID------LEDVLFDQYDIPICNSTLGTLGFQSPEIFGDVPYNLKQSLVCNIGCVAYFCLKSIF 607 G +HRDIK N++VN ETLEVKLID L +D Y GT + PE Y+ K + V ++G + + + S F Sbjct: 117 GVFHRDIKMSNLLVNVETLEVKLIDFGCGDLLRTSSYDTYK--------GTERYCPPEFIEMGEYHGKAATVWSLGVLLFRMITSFF 195 HSP 2 Score: 32.7278 bits (73), Expect = 2.268e-8 Identity = 12/25 (48.00%), Postives = 19/25 (76.00%), Query Frame = -2 Query: 273 SFITDCIKLDPDERIEFGDLLSHDW 347 SFI C+K +P++R+ +LLSH+W Sbjct: 220 SFIRGCLKSNPEKRLPLDELLSHNW 244
BLAST of SMED30032788 vs. Ensembl Zebrafish
Match: pimr72 (Pim proto-oncogene, serine/threonine kinase, related 72 [Source:ZFIN;Acc:ZDB-GENE-091118-122]) HSP 1 Score: 44.669 bits (104), Expect = 2.402e-7 Identity = 29/76 (38.16%), Postives = 41/76 (53.95%), Query Frame = -3 Query: 386 GYYHRDIKPKNIMVNEETLEVKLIDL--EDVLFDQYDIPICNSTLGTLGFQSPEIFGDVPYNLKQSLVCNIGCVAY 607 G HRDIK +N+++N+ETLEVKLID D+L C GT + PE Y+ K + V ++G + Y Sbjct: 135 GVLHRDIKLENLLINKETLEVKLIDFGCGDLLKTSAYTTFC----GTEDYCPPEFRSSGRYHGKAATVWSLGVLLY 206 HSP 2 Score: 28.8758 bits (63), Expect = 2.402e-7 Identity = 13/35 (37.14%), Postives = 19/35 (54.29%), Query Frame = -2 Query: 273 KINLSSELARSFITDCIKLDPDERIEFGDLLSHDW 377 K LS+E + + C++ P +RI G L SH W Sbjct: 229 KSGLSTECCQ-LVQSCLQRSPRKRIALGKLSSHRW 262
BLAST of SMED30032788 vs. Ensembl Zebrafish
Match: pimr74 (Pim proto-oncogene, serine/threonine kinase, related 74 [Source:ZFIN;Acc:ZDB-GENE-120215-19]) HSP 1 Score: 44.669 bits (104), Expect = 4.129e-7 Identity = 29/76 (38.16%), Postives = 41/76 (53.95%), Query Frame = -3 Query: 386 GYYHRDIKPKNIMVNEETLEVKLIDL--EDVLFDQYDIPICNSTLGTLGFQSPEIFGDVPYNLKQSLVCNIGCVAY 607 G HRDIK +N+++N+ETLEVKLID D+L C GT + PE Y+ K + V ++G + Y Sbjct: 134 GVLHRDIKLENLLINKETLEVKLIDFGCGDLLKTSAYTTFC----GTEDYCPPEFRSSGRYHGKAATVWSLGVLLY 205 HSP 2 Score: 28.1054 bits (61), Expect = 4.129e-7 Identity = 13/35 (37.14%), Postives = 18/35 (51.43%), Query Frame = -2 Query: 273 KINLSSELARSFITDCIKLDPDERIEFGDLLSHDW 377 K LS E + + C++ P +RI G L SH W Sbjct: 228 KSGLSKECCQ-LVQSCLQRSPRKRIALGKLSSHRW 261
BLAST of SMED30032788 vs. Ensembl Zebrafish
Match: pimr73 (Pim proto-oncogene, serine/threonine kinase, related 73 [Source:ZFIN;Acc:ZDB-GENE-120215-17]) HSP 1 Score: 44.669 bits (104), Expect = 4.227e-7 Identity = 29/76 (38.16%), Postives = 41/76 (53.95%), Query Frame = -3 Query: 386 GYYHRDIKPKNIMVNEETLEVKLIDL--EDVLFDQYDIPICNSTLGTLGFQSPEIFGDVPYNLKQSLVCNIGCVAY 607 G HRDIK +N+++N+ETLEVKLID D+L C GT + PE Y+ K + V ++G + Y Sbjct: 138 GVLHRDIKLENLLINKETLEVKLIDFGCGDLLKTSAYTTFC----GTEDYCPPEFRSSGRYHGKAATVWSLGVLLY 209 HSP 2 Score: 27.7202 bits (60), Expect = 4.227e-7 Identity = 13/35 (37.14%), Postives = 18/35 (51.43%), Query Frame = -2 Query: 273 KINLSSELARSFITDCIKLDPDERIEFGDLLSHDW 377 K LS E + + C++ P +RI G L SH W Sbjct: 232 KSGLSKECCQ-LVQSCLQRSPRKRIALGKLSSHRW 265
BLAST of SMED30032788 vs. Ensembl Zebrafish
Match: pimr70 (Pim proto-oncogene, serine/threonine kinase, related 70 [Source:ZFIN;Acc:ZDB-GENE-120215-28]) HSP 1 Score: 44.669 bits (104), Expect = 4.303e-7 Identity = 29/76 (38.16%), Postives = 41/76 (53.95%), Query Frame = -3 Query: 386 GYYHRDIKPKNIMVNEETLEVKLIDL--EDVLFDQYDIPICNSTLGTLGFQSPEIFGDVPYNLKQSLVCNIGCVAY 607 G HRDIK +N+++N+ETLEVKLID D+L C GT + PE Y+ K + V ++G + Y Sbjct: 129 GVLHRDIKLENLLINKETLEVKLIDFGCGDLLKTSAYTTFC----GTEDYCPPEFRSSGRYHGKAATVWSLGVLLY 200 HSP 2 Score: 28.1054 bits (61), Expect = 4.303e-7 Identity = 13/35 (37.14%), Postives = 18/35 (51.43%), Query Frame = -2 Query: 273 KINLSSELARSFITDCIKLDPDERIEFGDLLSHDW 377 K LS E + + C++ P +RI G L SH W Sbjct: 223 KPGLSKECCQ-LVQSCLQRSPRKRIALGKLSSHRW 256
BLAST of SMED30032788 vs. UniProt/SwissProt
Match: sp|U4PR86|MELK_CAEEL (Maternal embryonic leucine zipper kinase OS=Caenorhabditis elegans OX=6239 GN=pig-1 PE=1 SV=1) HSP 1 Score: 47.3654 bits (111), Expect = 1.767e-7 Identity = 42/156 (26.92%), Postives = 80/156 (51.28%), Query Frame = -3 Query: 377 ELLFLEQLSQYEYVPKLITYIDENNWSTVVMEYLDGDWMDLHDYTMQFPY--ESPXXXXXXXXXXXXXKMSEIGYYHRDIKPKNIMVNEETLEVKLIDL------EDVLFDQYDIPICNSTLGTLGFQSPEIFGDVPYNLKQSLVCNIGCVAYFCL 820 E+ L LS ++ + +L YI+ + +VMEY G ++ DY ++ ES + + L+ + + GY HRD+KP+N+++ E+ L +KLID E D++++ C G+ + +PE+ + Y ++ V ++G + Y L Sbjct: 57 EMDALRNLS-HQNICRLYHYIETEDKFFIVMEYCSGG--EMFDYIVRKERLEESEARHFFRQLVSAIAFVHSQGYAHRDLKPENLLLTED-LHLKLIDFGLCAKTEKGRIDKHNLDTC---CGSPAYAAPELIQGLQYKGNEADVWSMGILLYTLL 205 HSP 2 Score: 29.261 bits (64), Expect = 1.767e-7 Identity = 11/33 (33.33%), Postives = 19/33 (57.58%), Query Frame = -2 Query: 264 SELARSFITDCIKLDPDERIEFGDLLSHDWQHH 362 S L++ + +++ P+ RI LL HDW +H Sbjct: 235 SPLSKQLLRAMLQVVPERRISVKKLLEHDWLNH 267
BLAST of SMED30032788 vs. TrEMBL
Match: A0A2P1ERR9 (PIM-1-like protein OS=Schmidtea mediterranea OX=79327 PE=2 SV=1) HSP 1 Score: 207.223 bits (526), Expect = 9.222e-63 Identity = 110/150 (73.33%), Postives = 130/150 (86.67%), Query Frame = -3 Query: 374 RELLFLEQLSQYEYVPKLITYIDENNWSTVVMEYLDGDWMDLHDYTMQFPYESPXXXXXXXXXXXXXKMSEIGYYHRDIKPKNIMVNEETLEVKLIDLEDVLFDQYDIPICNSTLGTLGFQSPEIFGDVPYNLKQSLVCNIGCVAYFCLK 823 +EL FLE+LSQYEYVPKLI YIDENNWSTV MEY+ GDWMDL Y ++F E +KTI++NLI IVYKMS+IGYYHRDIKP+NIMVN+ TLE+KLIDLED+L+D+ +IP C S LGTLGFQSPE +G VPYNLKQSLV NIGC+AYFC++ Sbjct: 12 KELFFLEELSQYEYVPKLIEYIDENNWSTVAMEYIGGDWMDLSYYLVEFEGEKLVKTIMRNLISIVYKMSDIGYYHRDIKPENIMVNQRTLEIKLIDLEDMLYDENEIPKCISELGTLGFQSPETYGKVPYNLKQSLVFNIGCLAYFCIE 161 HSP 2 Score: 62.3882 bits (150), Expect = 1.074e-7 Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = -2 Query: 273 FKTKLSLQHWMCSIFLSKINLSSELARSFITDCIKLDPDERIEFGDLLSHDW 428 F TK+ Q + L ++ +SS+LARSFIT+CIKLDP+ERIEF DLL HDW Sbjct: 166 FDTKIETQKCL----LPEMKVSSKLARSFITECIKLDPNERIEFDDLLFHDW 213
BLAST of SMED30032788 vs. TrEMBL
Match: A0A507BQU4 (Protein kinase domain-containing protein OS=Synchytrium microbalum OX=1806994 GN=SmJEL517_g04701 PE=4 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 2.998e-8 Identity = 51/156 (32.69%), Postives = 82/156 (52.56%), Query Frame = -3 Query: 377 ELLFLEQLS-QYEYVPKLITYIDENNWST---VVMEYLDGDWMDLHDYT-MQFP-YESPXXXXXXXXXXXXXKMSEIGYYHRDIKPKNIMVNEETLEVKLIDLEDVLFDQYDIPICNSTL--GTLGFQSPEIFGDVPYNLKQSLVCNIGCVAYFCL 820 E+ + QL+ Q P ++ YI+ ++T +VMEYL DW+DL+DY + P E + I ++ + + ++GY H D+K +NIM+N +T EVK+ID IP ++L GT F +PE +PY + V +G + Y L Sbjct: 478 EIHLMRQLAIQQPPHPAIVKYIEHFEYNTRYIIVMEYLGEDWVDLYDYVEVHGPVREDHSREIFTQIVDAIEFLHKLGYSHNDVKDENIMINTKTREVKIIDFGSAT---PLIPGQTASLFFGTKKFAAPEAVQGLPYYPEAQEVWALGALLYVLL 630
BLAST of SMED30032788 vs. TrEMBL
Match: A0A1Y2CTR7 (Kinase-like protein (Fragment) OS=Rhizoclosmatium globosum OX=329046 GN=BCR33DRAFT_656547 PE=3 SV=1) HSP 1 Score: 61.2326 bits (147), Expect = 4.578e-7 Identity = 44/144 (30.56%), Postives = 74/144 (51.39%), Query Frame = -3 Query: 377 PKLITYIDE---NNWSTVVMEYLDGDWMDLHDYTMQFP--YESPXXXXXXXXXXXXXKMSEIGYYHRDIKPKNIMVNEETLEVKLIDLEDVL----FDQYDIPICNSTLGTLGFQSPE-IFGDVPYNLKQSLVCNIGCVAYFCL 778 P LI Y + N ++MEY+ +W+DL+DY ++ E I ++++ + + IGYYH DIK +N+M++ +T ++KLID D +C + GT F +PE + GD PYN + +G + + L Sbjct: 73 PNLINYYEHFELNGKFMIIMEYMGENWIDLYDYIEEYGPVREDVSMEIFRSIVETLVFLHSIGYYHNDIKDENVMIHSKTRQIKLIDFGSATPVPGPDDKTPNLCENFYGTKKFAAPEAVLGD-PYNPEMQESWALGTLLFVLL 215
BLAST of SMED30032788 vs. TrEMBL
Match: A0A1Y2BGF1 (Kinase-like protein (Fragment) OS=Rhizoclosmatium globosum OX=329046 GN=BCR33DRAFT_665162 PE=3 SV=1) HSP 1 Score: 61.2326 bits (147), Expect = 4.709e-7 Identity = 44/144 (30.56%), Postives = 74/144 (51.39%), Query Frame = -3 Query: 377 PKLITYIDE---NNWSTVVMEYLDGDWMDLHDYTMQFP--YESPXXXXXXXXXXXXXKMSEIGYYHRDIKPKNIMVNEETLEVKLIDLEDVL----FDQYDIPICNSTLGTLGFQSPE-IFGDVPYNLKQSLVCNIGCVAYFCL 778 P LI Y + N ++MEY+ +W+DL+DY ++ E I ++++ + + IGYYH DIK +N+M++ +T ++KLID D +C + GT F +PE + GD PYN + +G + + L Sbjct: 73 PNLINYYEHFELNGKFMIIMEYMGENWIDLYDYIEEYGPVREDVSMEIFRSIVETLVFLHSIGYYHNDIKDENVMIHSKTRQIKLIDFGSATPVPGPDDKTPNLCENFYGTKKFAAPEAVLGD-PYNPEMQESWALGTLLFVLL 215
BLAST of SMED30032788 vs. TrEMBL
Match: A0A060T9H3 (ARAD1C44660p OS=Blastobotrys adeninivorans OX=409370 GN=GNLVRS02_ARAD1C44660g PE=3 SV=1) HSP 1 Score: 47.3654 bits (111), Expect = 6.366e-7 Identity = 44/152 (28.95%), Postives = 74/152 (48.68%), Query Frame = -3 Query: 377 ELLFLEQLSQ-YEYVPKLITYIDENNWSTVVMEYLDGDWMDLHDYTMQFPYESPXXXXXXXXXXXXXKMSEIGYYHRDIKPKNI--MVNEETLEVKLIDLE-DVLFDQYDIPICNSTLGTLGFQSPEIFGDVPYNLKQSLVCNIGCVAYFCL 820 E++ L++LSQ ++ V LI Y + N +V +Y G + Y YES +I+ + V + G HRD+KP+N+ + +E E+ + D + D+ + +T GT + +PEIF ++ K V IG + YF L Sbjct: 61 EIVVLKRLSQGHKNVLTLIDYFETANNLYLVTDYARGGELFDRIYNKGSFYESNAAAMIRQITAGVAYLHSHGIVHRDLKPENLLFLTPDEDSELMIADFGLSRIIDEEKFRMLTTTCGTPAYMAPEIFQKTGHH-KPVDVWAIGVITYFLL 211 HSP 2 Score: 35.039 bits (79), Expect = 6.366e-7 Identity = 15/33 (45.45%), Postives = 20/33 (60.61%), Query Frame = -2 Query: 264 SELARSFITDCIKLDPDERIEFGDLLSHDWQHH 362 S+ AR FIT C+K+DP ER+ L H + H Sbjct: 246 SDTARDFITRCLKIDPSERMTAQQCLEHPFLAH 278
BLAST of SMED30032788 vs. Ensembl Cavefish
Match: ENSAMXT00000009626.2 (serine/threonine-protein kinase pim-1-like [Source:NCBI gene;Acc:111194017]) HSP 1 Score: 47.7506 bits (112), Expect = 7.322e-7 Identity = 29/76 (38.16%), Postives = 41/76 (53.95%), Query Frame = -3 Query: 386 EIGYYHRDIKPKNIMVNEETLEVKLIDLEDVLFDQYDIPICNSTLGTLGFQSPEIFGDVPYNLKQSLVCNIGCVAY 613 E G +HRDIKP N ++N +TLE+KLID D + NS GT + PE Y+ K + V ++G + Y Sbjct: 227 ERGVFHRDIKPGNFLINPQTLELKLIDFG--CADWVKLEGNNSYAGTRVYCPPEYLIKRRYHAKPATVWSLGVMLY 300 HSP 2 Score: 23.8682 bits (50), Expect = 7.322e-7 Identity = 7/16 (43.75%), Postives = 12/16 (75.00%), Query Frame = -2 Query: 273 DPDERIEFGDLLSHDW 320 +P++R FG +L+H W Sbjct: 341 NPNKRPCFGQILNHSW 356
BLAST of SMED30032788 vs. Ensembl Cavefish
Match: ENSAMXT00000030133.1 (serine/threonine-protein kinase pim-3-like [Source:NCBI gene;Acc:103028120]) HSP 1 Score: 48.521 bits (114), Expect = 2.612e-6 Identity = 47/151 (31.13%), Postives = 72/151 (47.68%), Query Frame = -3 Query: 386 ELLFLEQLSQ--YEYVPKLITYIDENNWSTVVMEYLDGDWMDLHDY---TMQFPYESPXXXXXXXXXXXXXKMSEIGYYHRDIKPKNIMVNEETLEVKLIDLE-DVLFDQYDIPICNSTLGTLGFQSPEIFGDVPYNLKQSLVCNIGCVAY 820 E+ +E++S+ + + +LI + DE VVME MDL D+ F E + I+ I V + + G HRDIK +N ++N T EVKL+D F + ++ N +GT F PE F Y+ S V ++G Y Sbjct: 114 EVALIEKMSEPPVKSIIQLIQWFDEPERYIVVMELFR-PCMDLLDFMCSKRGFFTEKKARHIMVQAIKAVTECHKRGVLHRDIKLENFLINTNTFEVKLVDFGCGDFFTEREL---NHYIGTEEFCPPEFFLSRSYHAAPSTVWSLGVFLY 260
BLAST of SMED30032788 vs. Ensembl Cavefish
Match: ENSAMXT00000043607.1 (pep primary_assembly:Astyanax_mexicanus-2.0:20:33833945:33836628:-1 gene:ENSAMXG00000042906.1 transcript:ENSAMXT00000043607.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 44.669 bits (104), Expect = 4.095e-6 Identity = 28/78 (35.90%), Postives = 42/78 (53.85%), Query Frame = -3 Query: 386 MSEIGYYHRDIKPKNIMVNEETLEVKLIDLEDVLFDQYDIPICNSTLGTLGFQSPEIFGDVPYNLKQSLVCNIGCVAY 619 M E HRD+K NI+V + VK+ D + +CNS +GTL + SPE+ + Y+ K+S V ++G V Y Sbjct: 152 MHEQDIVHRDLKCDNILVTADG-NVKIADFG---LSRVTKGLCNSMVGTLWYVSPEVIREKKYDAKKSDVWSLGIVLY 225 HSP 2 Score: 24.2534 bits (51), Expect = 4.095e-6 Identity = 10/29 (34.48%), Postives = 14/29 (48.28%), Query Frame = -2 Query: 273 ELARSFITDCIKLDPDERIEFGDLLSHDW 359 E R+ I D ++LDP R + H W Sbjct: 259 ESCRALILDMLQLDPSARPTVKKVSEHPW 287
BLAST of SMED30032788 vs. Ensembl Cavefish
Match: ENSAMXT00000040711.1 (serine/threonine-protein kinase pim-1-like [Source:NCBI gene;Acc:103035777]) HSP 1 Score: 43.1282 bits (100), Expect = 5.108e-6 Identity = 27/76 (35.53%), Postives = 40/76 (52.63%), Query Frame = -3 Query: 398 GYYHRDIKPKNIMVNEETLEVKLID------LEDVLFDQYDIPICNSTLGTLGFQSPEIFGDVPYNLKQSLVCNIG 607 G HRDIKP+N ++N TLE+KLID L+ ++ Y GT + PE+F Y+ K + V ++G Sbjct: 178 GVLHRDIKPENFLINPNTLELKLIDFGCGDWLKKYGYNLYS--------GTFEYVPPELFRKRRYHSKTATVWSLG 245 HSP 2 Score: 25.409 bits (54), Expect = 5.108e-6 Identity = 9/26 (34.62%), Postives = 14/26 (53.85%), Query Frame = -2 Query: 267 FITDCIKLDPDERIEFGDLLSHDWQH 344 I C++ P +R ++L HDW H Sbjct: 282 LIRQCLQYIPAKRPTIREILKHDWLH 307
BLAST of SMED30032788 vs. Planmine SMEST
Match: SMESG000061865.1 (SMESG000061865.1) HSP 1 Score: 278.1 bits (710), Expect = 1.121e-94 Identity = 149/150 (99.33%), Postives = 150/150 (100.00%), Query Frame = -3 Query: 374 RELLFLEQLSQYEYVPKLITYIDENNWSTVVMEYLDGDWMDLHDYTMQFPYESPXXXXXXXXXXXXXKMSEIGYYHRDIKPKNIMVNEETLEVKLIDLEDVLFDQYDIPICNSTLGTLGFQSPEIFGDVPYNLKQSLVCNIGCVAYFCLK 823 RELLFLEQLSQYEYVPKLITYIDENNWSTVVMEYLDGDWMDLHDYTMQFPYESPIKTIIKNLIIIVYKMSEIGYYHRDIKPKNIMVNEETLEVKLIDLEDVLFDQYDIPICNSTLGTLGFQSPEIFGDVPYNLKQSLVCNIGCVAYFCL+ Sbjct: 66 RELLFLEQLSQYEYVPKLITYIDENNWSTVVMEYLDGDWMDLHDYTMQFPYESPIKTIIKNLIIIVYKMSEIGYYHRDIKPKNIMVNEETLEVKLIDLEDVLFDQYDIPICNSTLGTLGFQSPEIFGDVPYNLKQSLVCNIGCVAYFCLE 215
BLAST of SMED30032788 vs. Planmine SMEST
Match: SMESG000061880.1 (SMESG000061880.1) HSP 1 Score: 278.87 bits (712), Expect = 9.548e-94 Identity = 151/156 (96.79%), Postives = 152/156 (97.44%), Query Frame = -3 Query: 356 RELLFLEQLSQYEYVPKLITYIDENNWSTVVMEYLDGDWMDLHDYTMQFPYESPXXXXXXXXXXXXXKMSEIGYYHRDIKPKNIMVNEETLEVKLIDLEDVLFDQYDIPICNSTLGTLGFQSPEIFGDVPYNLKQSLVCNIGCVAYFCLKSIFHQN 823 RELLFLEQLSQYEYVPKLITYIDENNWSTVVMEYLDGDWMDLHDYTMQFPYESPIKTIIKNLIIIVYKMSEIGYYHRDIKPKNIMVNEETLEVKLIDLEDVLFDQYDIPICNSTLGTLGFQSPEIFGDVPYNLKQSLVCNIGCVAYFCL+ F N Sbjct: 66 RELLFLEQLSQYEYVPKLITYIDENNWSTVVMEYLDGDWMDLHDYTMQFPYESPIKTIIKNLIIIVYKMSEIGYYHRDIKPKNIMVNEETLEVKLIDLEDVLFDQYDIPICNSTLGTLGFQSPEIFGDVPYNLKQSLVCNIGCVAYFCLEFQFPFN 221 HSP 2 Score: 69.707 bits (169), Expect = 1.398e-13 Identity = 35/54 (64.81%), Postives = 40/54 (74.07%), Query Frame = -2 Query: 273 LQFKTKLSLQHWMCSIFLSKINLSSELARSFITDCIKLDPDERIEFGDLLSHDW 434 QF ++ C+ L KINLSS+LARSFITDCIK DPDERIEFGDLL H+W Sbjct: 216 FQFPFNSKIETKKCN--LPKINLSSDLARSFITDCIKPDPDERIEFGDLLFHNW 267
BLAST of SMED30032788 vs. Planmine SMEST
Match: SMESG000032312.1 (SMESG000032312.1) HSP 1 Score: 254.988 bits (650), Expect = 6.611e-85 Identity = 136/150 (90.67%), Postives = 141/150 (94.00%), Query Frame = -3 Query: 374 RELLFLEQLSQYEYVPKLITYIDENNWSTVVMEYLDGDWMDLHDYTMQFPYESPXXXXXXXXXXXXXKMSEIGYYHRDIKPKNIMVNEETLEVKLIDLEDVLFDQYDIPICNSTLGTLGFQSPEIFGDVPYNLKQSLVCNIGCVAYFCLK 823 RELLFLEQLSQYEYVPKLITYIDENNWSTVVMEYL GDWMDL +TM FP E PIKTIIKNLIIIVY+MSEIGYYHRDIKP+NIMVN+ETLEVKLIDLED LFDQYDIPICNSTLGTLGFQSPEIFGDVPYNLKQSLVC GCVAYFCL+ Sbjct: 66 RELLFLEQLSQYEYVPKLITYIDENNWSTVVMEYLGGDWMDLSKFTMAFPIEKPIKTIIKNLIIIVYEMSEIGYYHRDIKPENIMVNKETLEVKLIDLEDALFDQYDIPICNSTLGTLGFQSPEIFGDVPYNLKQSLVCTFGCVAYFCLE 215 HSP 2 Score: 78.1814 bits (191), Expect = 6.611e-85 Identity = 36/40 (90.00%), Postives = 38/40 (95.00%), Query Frame = -2 Query: 264 LSKINLSSELARSFITDCIKLDPDERIEFGDLLSHDWQHH 383 L KINLSSELARSFITDCIKLDPDERIEFGDLLSHDW ++ Sbjct: 231 LPKINLSSELARSFITDCIKLDPDERIEFGDLLSHDWLYN 270
BLAST of SMED30032788 vs. Planmine SMEST
Match: SMESG000000218.1 (SMESG000000218.1) HSP 1 Score: 228.409 bits (581), Expect = 8.593e-74 Identity = 119/153 (77.78%), Postives = 138/153 (90.20%), Query Frame = -3 Query: 365 RELLFLEQLSQYEYVPKLITYIDENNWSTVVMEYLDGDWMDLHDYTMQFPYESPXXXXXXXXXXXXXKMSEIGYYHRDIKPKNIMVNEETLEVKLIDLEDVLFDQYDIPICNSTLGTLGFQSPEIFGDVPYNLKQSLVCNIGCVAYFCLKSIF 823 +ELLFLEQLSQYEYVPKLI YIDENNWSTVVMEYL+GDWM+L ++TM+F E IK I+ NLI+IVY+MS++GYYHRDIKP+NIM+N ET EVKLIDLEDVL++ D+PICNSTLGT+G+QSPEIFGDVPYNLKQSLV NIGCVAYFCL+ F Sbjct: 85 KELLFLEQLSQYEYVPKLIKYIDENNWSTVVMEYLNGDWMNLGEFTMRFADEKLIKIIMINLILIVYEMSDLGYYHRDIKPENIMINRETFEVKLIDLEDVLYNIDDMPICNSTLGTIGYQSPEIFGDVPYNLKQSLVFNIGCVAYFCLEFQF 237 HSP 2 Score: 63.1586 bits (152), Expect = 2.490e-11 Identity = 27/37 (72.97%), Postives = 32/37 (86.49%), Query Frame = -2 Query: 273 LSKINLSSELARSFITDCIKLDPDERIEFGDLLSHDW 383 L K+ +SSELA+SFI +CIKLDPDERIEFG+ LSH W Sbjct: 250 LPKMKVSSELAQSFIANCIKLDPDERIEFGEFLSHQW 286
BLAST of SMED30032788 vs. Planmine SMEST
Match: SMESG000061809.1 (SMESG000061809.1) HSP 1 Score: 211.075 bits (536), Expect = 3.893e-67 Identity = 111/150 (74.00%), Postives = 132/150 (88.00%), Query Frame = -3 Query: 374 RELLFLEQLSQYEYVPKLITYIDENNWSTVVMEYLDGDWMDLHDYTMQFPYESPXXXXXXXXXXXXXKMSEIGYYHRDIKPKNIMVNEETLEVKLIDLEDVLFDQYDIPICNSTLGTLGFQSPEIFGDVPYNLKQSLVCNIGCVAYFCLK 823 +EL FLE+LSQYEYVPKLI YIDENNWSTV MEY+ GDWMDL Y ++F E +KTI++NLI IVYKMS+IGYYHRDIKP+NIMVN++TLE+KLIDLED+L+D+ +IPIC S LGTLGFQSPE +G VPYNLKQSLV NIGC+AYFC++ Sbjct: 66 KELFFLEELSQYEYVPKLIEYIDENNWSTVAMEYIGGDWMDLSYYLVEFEGEKLVKTIMRNLISIVYKMSDIGYYHRDIKPENIMVNQKTLEIKLIDLEDMLYDENEIPICISELGTLGFQSPETYGKVPYNLKQSLVFNIGCLAYFCIE 215 HSP 2 Score: 63.929 bits (154), Expect = 1.272e-11 Identity = 32/52 (61.54%), Postives = 39/52 (75.00%), Query Frame = -2 Query: 273 FKTKLSLQHWMCSIFLSKINLSSELARSFITDCIKLDPDERIEFGDLLSHDW 428 F TK+ Q + L ++ +SS+LARSFIT+CIKLDPDERIEF DLL HDW Sbjct: 220 FDTKIETQKCL----LPEMKVSSKLARSFITECIKLDPDERIEFDDLLFHDW 267 The following BLAST results are available for this feature:
BLAST of SMED30032788 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SMED30032788 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 5
BLAST of SMED30032788 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 1
BLAST of SMED30032788 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of SMED30032788 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of SMED30032788 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SMED30032788 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 1
BLAST of SMED30032788 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30032788 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 4
BLAST of SMED30032788 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30032788 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30032788 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SMED30032788 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of SMED30032788 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30032788 ID=SMED30032788|Name=SMED30032788|organism=Schmidtea mediterranea sexual|type=transcript|length=825bpback to top protein sequence of SMED30032788-orf-1 >SMED30032788-orf-1 ID=SMED30032788-orf-1|Name=SMED30032788-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=157bp RELLFLEQLSQYEYVPKLITYIDENNWSTVVMEYLDGDWMDLHDYTMQFPback to top protein sequence of SMED30032788-orf-2 >SMED30032788-orf-2 ID=SMED30032788-orf-2|Name=SMED30032788-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=109bp FDLKMSMAMEIVEVPTYISVDEMNTSKTVDGGNKKKVKMKQRNWEEEIIFback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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