SMED30032656

Overview
NameSMED30032656
Smed IDSMED30032656
Length (bp)3042
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30032656 (SMED30032656) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30032656 (SMED30032656) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30032656 (SMED30032656) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30032656 (SMED30032656) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30032656

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 3

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
nervous systemSMED30032656 dd_Smed_v4_5277_1_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30032656 dd_Smed_v4_5277_1_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30032656 dd_Smed_v4_5277_1_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of SMED30032656 vs. Planmine SMEST
Match: SMESG000020958.1 (SMESG000020958.1)

HSP 1 Score: 322.398 bits (825), Expect = 3.790e-93
Identity = 228/309 (73.79%), Postives = 249/309 (80.58%), Query Frame = 2 
Query: 1775 MQNHNNDAGVDXXXXXXXXXXSIVAVRHQYEELKQKHEALQTKYARIKGTWAPPDVVKVLRQKIERLTRARDELVTESRAQRLLIKEQSIALRRAFTDTELQAYIPASIRARQLEIIPASHLPVSNELPSSSGSRNPIPEILSPSIETVVPQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTGTDPMEISCPTNXXXXXXXXXXXXXXXXXILYAPDVIFRSPARSIHINLIDEDPESFPVTHILDGLGLGAEDIAVLTGEVPNSSLAQEIAGPSTRREETQFLDPPPYRPRKRKHFPTDIDG 2701
            + N+N+D+G+  LP+IPRLPPSIVAVRHQYEELKQKHE LQ KY RIKGTWAPPD +KVLR+KIERLTRARDEL+TESRAQRLLIKEQS ALRRAFTDTELQA +P SIRA QL+IIPA HLP +N   S S SRNPIPE  S  +E +V QP++ +  SA   RTRRRPNRNRRRRERRRRVEE LTG +  E  CP + PPPPYQEFEFPEFDPDILYAPDV FRSPARSIHINLIDED ES P  H LD LGLG EDIAVLTGEVP + + QEIAGPSTRREE Q   PPPYRP K  HF   I G
Sbjct:  896 VMNNNHDSGLTGLPKIPRLPPSIVAVRHQYEELKQKHEMLQAKYDRIKGTWAPPDAIKVLRRKIERLTRARDELITESRAQRLLIKEQSTALRRAFTDTELQACVPGSIRASQLDIIPAYHLPTANVSSSPSVSRNPIPETPSLPVEPIVSQPSIGNAESAAITRTRRRPNRNRRRRERRRRVEEDLTGLELTEAPCPISGPPPPYQEFEFPEFDPDILYAPDVTFRSPARSIHINLIDEDLESSPAIHTLDRLGLGIEDIAVLTGEVPTAIVTQEIAGPSTRREENQLSSPPPYRPMKNVHFVETIWG 1204
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BLAST of SMED30032656 vs. Planmine SMEST
Match: SMESG000009535.1 (SMESG000009535.1)

HSP 1 Score: 282.722 bits (722), Expect = 1.155e-84
Identity = 188/287 (65.51%), Postives = 219/287 (76.31%), Query Frame = 2 
Query: 1838 SIVAVRHQYEELKQKHEALQTKYARIKGTWAPPDVVKVLRQKIERLTRARDELVTESRAQRLLIKEQSIALRRAFTDTELQAYIPASIRARQLEIIPASHLPVSNELPSSSGSRNPIPEILSPSIETVVPQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTGTDPMEISCPTNXXXXXXXXXXXXXXXXXILYAPDVIFRSPARSIHINLIDEDPESFPVTHILDGLGLGAEDIAVLTGEVPNSSLAQEIAGPSTRREETQFLDPPPYRPRKRKHFPTDID 2698
            SIVAVRHQYEEL++K++AL  KY R+KGTWA PDV+K LRQKIERLTRARDELVTESR QRLLI+EQS ALRRAFTD EL+  +P ++RA QLEIIPA H+PV   LPS   S     E  +P+   VV QP      + T   TRRRPNRNRRRR+RRRR EE+  G +  E+S  T DPPPPY+EFEFP+ DPDI YAP+V+FRSP  SIHINL+DEDP  FPVT +LDGLGLG E+IA+L GEVP    +QE+AGPSTR EE +   PPPYRP KRK+FPTDID
Sbjct:   53 SIVAVRHQYEELQRKYDALHAKYERVKGTWASPDVIKSLRQKIERLTRARDELVTESRIQRLLIREQSTALRRAFTDIELRTLVPGNVRASQLEIIPAHHIPVMGILPSLPVSNPSTSEARAPAATPVVSQPPTGAVETPTISTTRRRPNRNRRRRDRRRREEELSQGVETSELSRQTGDPPPPYEEFEFPDLDPDICYAPNVVFRSPVPSIHINLVDEDPNPFPVTQVLDGLGLGTEEIAILMGEVPQIVSSQEVAGPSTRGEENRPTSPPPYRPMKRKYFPTDID 339
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BLAST of SMED30032656 vs. Planmine SMEST
Match: SMESG000015007.1 (SMESG000015007.1)

HSP 1 Score: 228.794 bits (582), Expect = 1.544e-67
Identity = 148/290 (51.03%), Postives = 188/290 (64.83%), Query Frame = 2 
Query: 1838 SIVAVRHQYEELKQKHEALQTKYARIKGTWAPPDVVKVLRQKIERLTRARDELVTESRAQRLLIKEQSIALRRAFTDTELQAYIPASIRARQLEIIPASHLPVSNELPSSSGSRNPIPEILSPSIETVVPQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTGTDPMEISCPTNXXXXXXXXXXXXXXXXXILYAPDVIFRSPARSIHINLIDEDPESFPVTHILDGLGLGAEDIAVLTGEVPNSSLAQEIAGPSTRREETQFLDPPPYRPRKRKHFPTDIDGDD 2707
            S+VA+R +YEELK +H AL+ KY R+KGTWAPP+ V+ L Q+I RLT AR+EL+ ESR+QRLLIKEQ+ ALR+AFTD ELQ ++P S+RA QL IIPA HLP++   P+ + S   +P + SP I  +                       +RR    RRR +     T+P+E  C  +D PP YQEFE P  DPDILYAP+V F S A  IHINL+DED +   V  +LD LGL  EDIAVLTG+ P  S + EIAGPSTR +      PPPYRP KR++ PTD+D +D
Sbjct:   21 SVVAMRQKYEELKLQHAALRAKYERVKGTWAPPETVRGLLQEIARLTEAREELIAESRSQRLLIKEQATALRQAFTDVELQTHVPGSVRAHQLNIIPAHHLPITKLPPTPTAST--LPSMESPQIPVM----------------ESPAHPAHRRPNRNRRRSDRRRRETEPIEGPCRVDDLPPHYQEFEIPGLDPDILYAPNVTFPSRASLIHINLVDEDSDPPQVVRVLDRLGLDLEDIAVLTGDTPMVSHSIEIAGPSTRVDGNCHASPPPYRPAKRRYLPTDMDAED 292
[Close]
BLAST of SMED30032656 vs. Planmine SMEST
Match: SMESG000075471.1 (SMESG000075471.1)

HSP 1 Score: 181.415 bits (459), Expect = 2.179e-48
Identity = 127/311 (40.84%), Postives = 162/311 (52.09%), Query Frame = 2 
Query: 1838 SIVAVRHQYEELKQKHEALQTKYARIKGTWAPPDVVKVLRQKIERLTRARDELVTESRAQRLLIKEQSIALRRAFTDTELQAYIPASIRARQLEIIPASHLPVSNELPSSSGSR--NPIPEILSPSIETVVPQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTGTDPMEISCPTNXXXXXXXXXXXXXXXXXILYAPDVIFRSPARSIHINLIDEDPESFPVTHILDGLGLGAEDIAVLTGEVPNSSLAQEIAGPSTRREETQFLDPPPYRPRKRKHFPTDIDGDD*WEFELVCDANRTSEWKSC 2764
            S++A+R + EEL+ KH +L+TKY RIKGTW+ P+V + L +K ERLTRARDEL+ ESR+QRLLIKEQ  ALR+AFTD EL+                        ++P S G+R  N IPE   P +E   P PT+    S              + +    +      G    EI                   DP+ILYAP   F   A  IHINL+DED +S  V+ +LD LGL  +DIAVLT  VP  S   EIAGPSTR E    ++PPPYRP KR+  PTDI   +      V ++    EW S 
Sbjct:   21 SVIALRQRLEELEAKHNSLRTKYERIKGTWSSPEVTQGLHRKKERLTRARDELIAESRSQRLLIKEQVTALRQAFTDEELRT-----------------------QVPGSVGARQLNIIPEHHLPIVE---PPPTLSALFSLPQATVAETSVNPSQSKATTSQGSGAPPGNGEFEIPG----------------LDPNILYAPTATFPPLATQIHINLMDEDSDSPGVSQVLDRLGLNLDDIAVLTDSVPQISPQVEIAGPSTRIEGNHSVNPPPYRPAKRRCLPTDIRESEGPSRSSVSNSAHLLEWHSA 289

HSP 2 Score: 77.7962 bits (190), Expect = 1.784e-14
Identity = 44/94 (46.81%), Postives = 57/94 (60.64%), Query Frame = 2 
Query: 2426 ILYAPDVIFRSPARSIHINLIDEDPESFPVTHILDGLGLGAEDIAVLTGEVPNSSLAQEIAGPSTRREETQFLDPPPYRPRKRKHFPTDIDGDD 2707
            I+YAP +I  SPARSI+INL+++  E+  + H L+ LGL   +I VLTG VP S       GPSTR E     +PP  R  KR+  P DID +D
Sbjct:  439 IIYAPSMINHSPARSIYINLVEDATEAPSLNHALEQLGLYIGEITVLTGRVPMSPPPANEPGPSTRVELNVITNPPLRRQPKRRCLPVDIDAED 532
[Close]
BLAST of SMED30032656 vs. Planmine SMEST
Match: SMESG000059849.1 (SMESG000059849.1)

HSP 1 Score: 182.185 bits (461), Expect = 2.944e-47
Identity = 143/290 (49.31%), Postives = 187/290 (64.48%), Query Frame = 2 
Query: 1838 SIVAVRHQYEELKQKHEALQTKYARIKGTWAPPDVVKVLRQKIERLTRARDELVTESRAQRLLIKEQSIALRRAFTDTELQAYIPASIRARQLEIIPASHLPVSNELPSSSGSRNPIPEILSPSIETVVPQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTGTDPMEISCPTNXXXXXXXXXXXXXXXXXILYAPDVIFRSPARSIHINLIDEDPESFPVTHILDGLGLGAEDIAVLTGEVPNSSLAQEIAGPSTRREETQFLDPPPYRPRKRKHFPTDIDGDD 2707
            SI+A R + E+L+++H A Q KY ++KGTW  PD  K L QKI RL+R RD+L+ ESR QR+LIKEQ   LR+ FTD EL+A IP S+ AR L IIPA HL  S E P  + S  P P +++ S +T V +P         S   RRR NRNRRRRE+RRR   + + T+P        D PPPYQEFEFP+ + DI+YAP V+  SPARSIHI+L+DE  E+  V   L+ L L  ++IAVLTG +P      +  GPS+R +    ++PPPYRP KR+ FPTD+D D+
Sbjct:  501 SIIATRQRLEQLEEEHAAHQKKYQKVKGTWLSPDAAKKLYQKISRLSRVRDDLIIESRGQRILIKEQGTTLRQIFTDAELRARIPGSVLARNLNIIPAQHL--SLETPPVTLS-TPTP-VIAESSQTPVAEP--------RSGAARRRLNRNRRRREQRRRAASLFSATEPSNAPYSIQDLPPPYQEFEFPDMEADIIYAPIVVLHSPARSIHIDLVDEVDETPTVNRSLERLMLDPDEIAVLTGRLPERLPLPDEPGPSSRIDFNIHINPPPYRPAKRRCFPTDMDADE 778
The following BLAST results are available for this feature:
BLAST of SMED30032656 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032656 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032656 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032656 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032656 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032656 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032656 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032656 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032656 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032656 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032656 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032656 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032656 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032656 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000020958.13.790e-9373.79SMESG000020958.1[more]
SMESG000009535.11.155e-8465.51SMESG000009535.1[more]
SMESG000015007.11.544e-6751.03SMESG000015007.1[more]
SMESG000075471.12.179e-4840.84SMESG000075471.1[more]
SMESG000059849.12.944e-4749.31SMESG000059849.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30032656 ID=SMED30032656|Name=SMED30032656|organism=Schmidtea mediterranea sexual|type=transcript|length=3042bp
AAAATTACAAAAATATTTTGAAATTAATAAAATAATTAAAAAACCCTAAA
AATGGCGAAAAATCGCCTATTGGTCGCACACATGCACGAAAATACTATAA
ATACAGTGATGAATTTCATTATTTTTAACTTTTTATGCCATTAAAATTTT
ACGATTGTCAAGATAAAGAAAACTCTTCAAACGTAAGGAATTTATTTTTT
GTATAGGTTTTGTCTTAGTCTTTATGTTTTCTTTATAAGGTTAATACGAA
CTCAATAAATGTCTCATTCACTTCTGTGTTAATTAAATTATATTTATATT
TATCGTCCGACCATTAAAATCTTATATATATCGTATGGTAATAGCTGGTC
CATGGGACGGATCTCGGGCTAACTAGTGGGTGAAAACCCTTAGTTGGGCT
CGCGGGTCATGCCTCGTGGACCCCTCGGCAGTCCGCAGTCGGGTCTGGCG
ATTATGCACAGGACCGCTACGCAGGGCGCCGTTGTATACTCGGGGCGGCT
TCTGAAATATGTGGCCGGAACGAGTCGGAATAAAATCAGGGAAGATGCGA
CAGCAGAGAAAAGGGGGAATTTAGGCATGATCGCAACTAGATCATACGAA
TCATTTTCTTTCGGACATCGCAATAAGAAATGGGTAGCAGGGGTAAGAGT
AGGAATAGTTGATGAACCAATATCATAAGATTTCCGTGCAAAATAATCTC
GTAAACCCGTTAAAATGAGCAAACCCAAGGAAGAATGGTTACGGGAATGT
CAGCACGAACGACAAAACACAAAAACTTCTACCCGACCAGATAGAATTGT
GAAATGGTGACAGTGGGGGACCCAAAACATTTAAATCGAAAATCAATAAA
TTTGCACAAGTAGTCAATAGTTATGCCTGAGTGCGTATGAGATTTTCAAG
AAATGATCTAGTGTAACGCGATGTACAATAAATTTAAATTAAAGTTGGTA
TAGAATTTTAGCAAATCAATAGAACGTGACCAATTTCGTGACATTTTTAG
ATGCACCATAGAGATAACAACAGCGATAAGTGTAGCAAATAACACGAACA
TAACGGCGAGAGTAATAACACTACTCACCACGAGTACAACAGAACCAATA
AAATAAAATAAAATAAAATATAACAATGATAGGAAAGGGTAATAATTGCA
CGGGTGTAACAAAAATAAATAATATAGTACGTGGAATCAGGGCAAATAGT
AGTAATAGCTATAATAACTTCAATGGATATAATACTAGAGATCGAACGAA
ACGGATTATCAAAATTTAATAGCGACAATAAATTCCATAAACAAGATAAC
CGTAATGAATGAAATCAAGAAAATACCTACAATGCCCATGGTAAGTATAA
TAACAATTAGGAACTAATTTGGAATAGATGGCGTTTAGTCTAGAGATAAT
CATTGAGGAAAGTATGCCGAAACCACAGAAATTCAATCATTTCTTAAACG
AATACCTATGTCGTGATAGAATAAACGAAAATGCTCACAGAGTAATTAAA
TAAAACGTTCAGTCGTTTGATCACAAATGGGATAAATTAGGGTTAGTCGA
CTCTGTAATAATTAGCGCACGACCTATCGTAGTACGCCCGAAGATACCTT
AGCGATACATAATAATGACAAACGGTTAAATTACGAGGAAATTTCAAGGG
GAATAACAGTAATAAGGATTTAGCCATTAAACTGCCACCCTGCCTCTCGC
CAAGGTTCCCGTATTCTATCACCACTTTATTTCTCAGGAGGCTTCCCTTA
TTCTTCCTTTGTTTTCTTTTTAGGATGCAGAATCATAATAACGACGCCGG
AGTGGACAGATTGCCGAGAATACCCCGACTTCCCCCGTCAATCGTGGCCG
TCCGCCACCAATATGAGGAATTAAAGCAAAAACACGAGGCACTCCAGACC
AAATATGCACGAATAAAGGGCACCTGGGCTCCGCCCGATGTCGTCAAAGT
GTTAAGACAGAAGATCGAGCGGCTCACTCGAGCACGAGACGAGCTGGTCA
CCGAATCCCGTGCTCAGCGGCTGCTCATCAAAGAGCAATCAATTGCACTC
CGCCGTGCATTTACGGATACCGAACTCCAAGCTTACATCCCGGCAAGTAT
CCGAGCCAGGCAATTGGAAATAATACCAGCTTCCCACCTTCCTGTCTCAA
ATGAATTGCCTTCATCCTCAGGCTCCAGGAACCCAATCCCTGAAATTCTC
AGTCCGTCTATCGAGACTGTTGTCCCTCAACCAACTGTTAGGGACACAAG
GAGTGCTACTAGCGTACGGACTCGCCGGCGACCGAATAGAAATCGGCGTC
GTCGCGAGCGGCGCCGACGAGTGGAAGAGGTCCTCACTGGAACGGACCCT
ATGGAGATCTCCTGTCCGACCAACGATCCGCCTCCACCTTACCAGGAGTT
TGAATTTCCGGAATTCGACCCGGATATCCTCTACGCTCCCGATGTAATAT
TCCGATCACCGGCCCGATCTATTCACATAAATTTGATCGACGAGGATCCG
GAATCTTTCCCGGTCACCCACATCCTCGATGGGCTTGGGCTCGGAGCGGA
AGATATCGCCGTTCTTACGGGCGAAGTGCCTAATTCTAGTCTGGCACAAG
AAATCGCAGGTCCCTCAACCAGAAGAGAAGAGACCCAATTCTTAGACCCT
CCGCCATATAGGCCAAGGAAACGAAAACATTTTCCCACCGATATCGATGG
AGACGATTAATGGGAATTCGAATTAGTGTGTGATGCAAATAGAACGTCGG
AGTGGAAATCCTGTCCCATAGAAACTTGACATGACTAAATTTTGCACAAC
ATTTTGTTTCGTTGATGAGATGAATCCAATTGTTAATAATATGATGTTTT
CTTTTGTTTTCGTTTTATTTCCTGATGTTGGGATAGTTAAATGAATGAGT
TTATAAGCGGCGTAGCGGGATTAAGTGGATTAAACTATGGTAAACTCATG
TTAGGAATAGATGATTATCCATAATCTTCTCTCCGAGGGTTGTCGCGAAT
GGGTAACCAAGGGGTGAAAGCGTAAGCCCTTCTAACGGCAGC
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protein sequence of SMED30032656-orf-1

>SMED30032656-orf-1 ID=SMED30032656-orf-1|Name=SMED30032656-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=312bp
MQNHNNDAGVDRLPRIPRLPPSIVAVRHQYEELKQKHEALQTKYARIKGT
WAPPDVVKVLRQKIERLTRARDELVTESRAQRLLIKEQSIALRRAFTDTE
LQAYIPASIRARQLEIIPASHLPVSNELPSSSGSRNPIPEILSPSIETVV
PQPTVRDTRSATSVRTRRRPNRNRRRRERRRRVEEVLTGTDPMEISCPTN
DPPPPYQEFEFPEFDPDILYAPDVIFRSPARSIHINLIDEDPESFPVTHI
LDGLGLGAEDIAVLTGEVPNSSLAQEIAGPSTRREETQFLDPPPYRPRKR
KHFPTDIDGDD*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000099neuron
PLANA:0000101muscle cell