Protocadherin gamma
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Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30032627 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 5
Homology
BLAST of Protocadherin gamma vs. Ensembl Human
Match: PCDH11Y (protocadherin 11 Y-linked [Source:HGNC Symbol;Acc:HGNC:15813]) HSP 1 Score: 207.223 bits (526), Expect = 7.098e-54 Identity = 217/800 (27.12%), Postives = 352/800 (44.00%), Query Frame = 3
Query: 243 YWIKENQPPGLVVGNLLDNL-----PYKQYFISPGYHFVLQKESEEFFSLKPGSS-MLTTSKLIDLESLCGS----SDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSV----SKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKD--KTSRLQFIIVPTINVEIAKTFAI-SDQGIIYLIKHLDYETAPKYEIPVRVTDGEF-SSNGRVEVVIIDVNDCAP----QFTLNPEN--LVISENTLTKTLLGNIVVYDQDS-------AYVDSGIECREGSPNDAMRFDITENNS----ERTKKINI-YLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFAD 2534
Y I+E P +++GNLL +L P K + + V + ++ + + TT ID E LC C+ ++V ++ D+ F + ++I ++ED+NDN P F +I E LP A D D+ IN +Y L ++ F V D P LI+ KELD E DT+ + + + +P R + ++ + + + D NDN P F ++ V I EN + + QL ATD D + +++ F ++ + F + + G+I + + LD E P +++ V +DG + V V + DVND P ++ +NP N +V+SEN T + I V D+D+ + D I R P + +F + EN + E TK+ I L + + +N + + ++ NDN+P FT + V + EN P L+ VSATD D G N++I Y + + F +D +G + ++ LDREK+D Y T++A D + + TS TV + +ID ND +P + F V EN P +G + TD D G N +++ + T G + +SFDRE Q ++ + D G + SS V I ++D NDN P V P YNYS V + + + +F D D G N +V +S+ + + LF ++ I L +D V + A D G P S VI+ F +
Sbjct: 49 YTIREEIPENVLIGNLLKDLNLSLIPNKSLTTTMQFKLVYKTGDVPLIRIEEDTGEIFTTGARIDREKLCAGIPRDEHCF-----YEVEVAILPDEIF-RLVKIRFLIEDINDNAPLFPATVINISIPE-NSAINSKYTLPAAVDPDVG-INGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAI-LQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVLASDGGLMPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRL-RPVFSNQF-LLENAAYLDYESTKEYAIKLLAADAGKPPLNQSAMLFIKVKDE--------------------NDNAPVFTQSFVTVSIPENNSPGIQLMKVSATDADSGPNAEINYLLGPDAPPE-FSLDRRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPL--TSNVTVFVSIIDQNDNSPVFTHNEYKFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQT-GVIRPNISFDRE--KQESYTFYVKAED-GGRVSRSSSAKVTINVVDVNDNKPVFIVPP-----YNYSYE-------LVLPSTNPGTVVFQVIAVDNDTGMNAEVRYSI----VGGNTRDLFAIDQETGNITLMEKCDVTDLGLHRVLVKANDLGQPDSLFSVVIVNLFVN 794 HSP 2 Score: 111.694 bits (278), Expect = 3.961e-24 Identity = 135/507 (26.63%), Postives = 226/507 (44.58%), Query Frame = 3
Query: 1104 YEIPVRVTDGEFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREG-SPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISD---HTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRI------NESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFI--------FTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSP---IFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADIPPRLIDQN 2561
YE+ V + E ++ +I D+ND AP F N+ I EN+ + D D +G++ E + D+ E E K + + +E+DR++ D + D G R ++T + ++V D NDN P F T+ V + EN + + ATD D G N++I + S+ + ++ F ++ +G I + LDRE+ +++ V+A+D + R A V ++V DVND P I N +T + EN P+ T I + TD D NG+ F L P FS+ F LL N + L D ES + +++++ D G+ L+ + IK+ DENDN+P T +TVS E+ NSP + + +D D GPN ++ Y + + F L+ + + + + +++L T++AKD G PP ++ + V +IDQN
Sbjct: 129 YEVEVAILPDEIFRLVKIRFLIEDINDNAPLFPATVINISIPENSAINSKYTLPAAVDPDVGI--NGVQNYELIKSQNIFGLDVIE-TPEGDKMPQLIVQKELDREE--KDTYVMKVKVEDGGFPQR-SSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVLASDGGLMPAR----AMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLRP-VFSNQF-LLENAAYL-----DYESTKE--YAIKLLAADAGKP-PLNQSAMLFIKVKDENDNAPVF-----------------TQSFVTVSIPEN-NSPGIQLMKVSATDADSGPNAEIN-----YLLGPDAPPEFSLDRRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVS-------IIDQN 585 HSP 3 Score: 95.5153 bits (236), Expect = 3.904e-19 Identity = 141/585 (24.10%), Postives = 230/585 (39.32%), Query Frame = 3
Query: 849 ITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKD----KTSRLQFIIVPTI-NVEIAKTFAISDQGIIYLIKHLDYETAPKYEIPVRVTDGEF---SSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRF---DITENNSERTKKIN-----IYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYV------VRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADI 2537
I +I+DINDN P F ++ + I EN +N + A D D + I I +++ +T + + K LD E Y + V+V DG F SS ++V + D ND P F + I EN T + + D D N + F ++ N + R +N I + + +DR++ + ++ +D G+ A V + V D NDN P + V V + EN+ + ++ TDKD N ++ F + + N + LD E Y + ++A D + + A + I V D ND AP +S T S+ EN G + K+ ATD D G N + + L P A + G L DRE + K+ I +D G L+S V + I+D+NDNSP + +N + V + + + T +D D G N V S+ L N F ++ I+ S+ + + + A+D G R +S + + D+
Sbjct: 146 IRFLIEDINDNAPLFPATVINISIPENSAINSKYTLPAAVDPDVGINGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLHATDADIGE------------NAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLL--VLASDGGL---MPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLRPVFSNQFLLENAAYLDYESTKEYAIKLLAADAGKPPLNQS--AMLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLMKVSATDADSGPNAEINYLLGPDAPPEFSLDRRTGMLTVVKKLDRE--KEDKYLFTILAKDNGVP-PLTSNVTVFVSIIDQNDNSP--------VFTHN-------EYKFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSI------LDENDDFTIDSQTGVIRPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDV 687
BLAST of Protocadherin gamma vs. Ensembl Human
Match: PCDH11Y (protocadherin 11 Y-linked [Source:HGNC Symbol;Acc:HGNC:15813]) HSP 1 Score: 207.223 bits (526), Expect = 7.098e-54 Identity = 217/800 (27.12%), Postives = 352/800 (44.00%), Query Frame = 3
Query: 243 YWIKENQPPGLVVGNLLDNL-----PYKQYFISPGYHFVLQKESEEFFSLKPGSS-MLTTSKLIDLESLCGS----SDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSV----SKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKD--KTSRLQFIIVPTINVEIAKTFAI-SDQGIIYLIKHLDYETAPKYEIPVRVTDGEF-SSNGRVEVVIIDVNDCAP----QFTLNPEN--LVISENTLTKTLLGNIVVYDQDS-------AYVDSGIECREGSPNDAMRFDITENNS----ERTKKINI-YLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFAD 2534
Y I+E P +++GNLL +L P K + + V + ++ + + TT ID E LC C+ ++V ++ D+ F + ++I ++ED+NDN P F +I E LP A D D+ IN +Y L ++ F V D P LI+ KELD E DT+ + + + +P R + ++ + + + D NDN P F ++ V I EN + + QL ATD D + +++ F ++ + F + + G+I + + LD E P +++ V +DG + V V + DVND P ++ +NP N +V+SEN T + I V D+D+ + D I R P + +F + EN + E TK+ I L + + +N + + ++ NDN+P FT + V + EN P L+ VSATD D G N++I Y + + F +D +G + ++ LDREK+D Y T++A D + + TS TV + +ID ND +P + F V EN P +G + TD D G N +++ + T G + +SFDRE Q ++ + D G + SS V I ++D NDN P V P YNYS V + + + +F D D G N +V +S+ + + LF ++ I L +D V + A D G P S VI+ F +
Sbjct: 49 YTIREEIPENVLIGNLLKDLNLSLIPNKSLTTTMQFKLVYKTGDVPLIRIEEDTGEIFTTGARIDREKLCAGIPRDEHCF-----YEVEVAILPDEIF-RLVKIRFLIEDINDNAPLFPATVINISIPE-NSAINSKYTLPAAVDPDVG-INGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAI-LQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVLASDGGLMPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRL-RPVFSNQF-LLENAAYLDYESTKEYAIKLLAADAGKPPLNQSAMLFIKVKDE--------------------NDNAPVFTQSFVTVSIPENNSPGIQLMKVSATDADSGPNAEINYLLGPDAPPE-FSLDRRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPL--TSNVTVFVSIIDQNDNSPVFTHNEYKFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQT-GVIRPNISFDRE--KQESYTFYVKAED-GGRVSRSSSAKVTINVVDVNDNKPVFIVPP-----YNYSYE-------LVLPSTNPGTVVFQVIAVDNDTGMNAEVRYSI----VGGNTRDLFAIDQETGNITLMEKCDVTDLGLHRVLVKANDLGQPDSLFSVVIVNLFVN 794 HSP 2 Score: 111.694 bits (278), Expect = 3.961e-24 Identity = 135/507 (26.63%), Postives = 226/507 (44.58%), Query Frame = 3
Query: 1104 YEIPVRVTDGEFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREG-SPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISD---HTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRI------NESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFI--------FTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSP---IFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADIPPRLIDQN 2561
YE+ V + E ++ +I D+ND AP F N+ I EN+ + D D +G++ E + D+ E E K + + +E+DR++ D + D G R ++T + ++V D NDN P F T+ V + EN + + ATD D G N++I + S+ + ++ F ++ +G I + LDRE+ +++ V+A+D + R A V ++V DVND P I N +T + EN P+ T I + TD D NG+ F L P FS+ F LL N + L D ES + +++++ D G+ L+ + IK+ DENDN+P T +TVS E+ NSP + + +D D GPN ++ Y + + F L+ + + + + +++L T++AKD G PP ++ + V +IDQN
Sbjct: 129 YEVEVAILPDEIFRLVKIRFLIEDINDNAPLFPATVINISIPENSAINSKYTLPAAVDPDVGI--NGVQNYELIKSQNIFGLDVIE-TPEGDKMPQLIVQKELDREE--KDTYVMKVKVEDGGFPQR-SSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVLASDGGLMPAR----AMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLRP-VFSNQF-LLENAAYL-----DYESTKE--YAIKLLAADAGKP-PLNQSAMLFIKVKDENDNAPVF-----------------TQSFVTVSIPEN-NSPGIQLMKVSATDADSGPNAEIN-----YLLGPDAPPEFSLDRRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVS-------IIDQN 585 HSP 3 Score: 95.5153 bits (236), Expect = 3.904e-19 Identity = 141/585 (24.10%), Postives = 230/585 (39.32%), Query Frame = 3
Query: 849 ITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKD----KTSRLQFIIVPTI-NVEIAKTFAISDQGIIYLIKHLDYETAPKYEIPVRVTDGEF---SSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRF---DITENNSERTKKIN-----IYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYV------VRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADI 2537
I +I+DINDN P F ++ + I EN +N + A D D + I I +++ +T + + K LD E Y + V+V DG F SS ++V + D ND P F + I EN T + + D D N + F ++ N + R +N I + + +DR++ + ++ +D G+ A V + V D NDN P + V V + EN+ + ++ TDKD N ++ F + + N + LD E Y + ++A D + + A + I V D ND AP +S T S+ EN G + K+ ATD D G N + + L P A + G L DRE + K+ I +D G L+S V + I+D+NDNSP + +N + V + + + T +D D G N V S+ L N F ++ I+ S+ + + + A+D G R +S + + D+
Sbjct: 146 IRFLIEDINDNAPLFPATVINISIPENSAINSKYTLPAAVDPDVGINGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLHATDADIGE------------NAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLL--VLASDGGL---MPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLRPVFSNQFLLENAAYLDYESTKEYAIKLLAADAGKPPLNQS--AMLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLMKVSATDADSGPNAEINYLLGPDAPPEFSLDRRTGMLTVVKKLDRE--KEDKYLFTILAKDNGVP-PLTSNVTVFVSIIDQNDNSP--------VFTHN-------EYKFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSI------LDENDDFTIDSQTGVIRPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDV 687
BLAST of Protocadherin gamma vs. Ensembl Human
Match: PCDH11Y (protocadherin 11 Y-linked [Source:HGNC Symbol;Acc:HGNC:15813]) HSP 1 Score: 206.838 bits (525), Expect = 9.734e-54 Identity = 217/800 (27.12%), Postives = 352/800 (44.00%), Query Frame = 3
Query: 243 YWIKENQPPGLVVGNLLDNL-----PYKQYFISPGYHFVLQKESEEFFSLKPGSS-MLTTSKLIDLESLCGS----SDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSV----SKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKD--KTSRLQFIIVPTINVEIAKTFAI-SDQGIIYLIKHLDYETAPKYEIPVRVTDGEF-SSNGRVEVVIIDVNDCAP----QFTLNPEN--LVISENTLTKTLLGNIVVYDQDS-------AYVDSGIECREGSPNDAMRFDITENNS----ERTKKINI-YLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFAD 2534
Y I+E P +++GNLL +L P K + + V + ++ + + TT ID E LC C+ ++V ++ D+ F + ++I ++ED+NDN P F +I E LP A D D+ IN +Y L ++ F V D P LI+ KELD E DT+ + + + +P R + ++ + + + D NDN P F ++ V I EN + + QL ATD D + +++ F ++ + F + + G+I + + LD E P +++ V +DG + V V + DVND P ++ +NP N +V+SEN T + I V D+D+ + D I R P + +F + EN + E TK+ I L + + +N + + ++ NDN+P FT + V + EN P L+ VSATD D G N++I Y + + F +D +G + ++ LDREK+D Y T++A D + + TS TV + +ID ND +P + F V EN P +G + TD D G N +++ + T G + +SFDRE Q ++ + D G + SS V I ++D NDN P V P YNYS V + + + +F D D G N +V +S+ + + LF ++ I L +D V + A D G P S VI+ F +
Sbjct: 60 YTIREEIPENVLIGNLLKDLNLSLIPNKSLTTTMQFKLVYKTGDVPLIRIEEDTGEIFTTGARIDREKLCAGIPRDEHCF-----YEVEVAILPDEIF-RLVKIRFLIEDINDNAPLFPATVINISIPE-NSAINSKYTLPAAVDPDVG-INGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAI-LQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVLASDGGLMPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRL-RPVFSNQF-LLENAAYLDYESTKEYAIKLLAADAGKPPLNQSAMLFIKVKDE--------------------NDNAPVFTQSFVTVSIPENNSPGIQLMKVSATDADSGPNAEINYLLGPDAPPE-FSLDRRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPL--TSNVTVFVSIIDQNDNSPVFTHNEYKFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQT-GVIRPNISFDRE--KQESYTFYVKAED-GGRVSRSSSAKVTINVVDVNDNKPVFIVPP-----YNYSYE-------LVLPSTNPGTVVFQVIAVDNDTGMNAEVRYSI----VGGNTRDLFAIDQETGNITLMEKCDVTDLGLHRVLVKANDLGQPDSLFSVVIVNLFVN 805 HSP 2 Score: 111.694 bits (278), Expect = 4.582e-24 Identity = 135/507 (26.63%), Postives = 226/507 (44.58%), Query Frame = 3
Query: 1104 YEIPVRVTDGEFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREG-SPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISD---HTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRI------NESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFI--------FTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSP---IFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADIPPRLIDQN 2561
YE+ V + E ++ +I D+ND AP F N+ I EN+ + D D +G++ E + D+ E E K + + +E+DR++ D + D G R ++T + ++V D NDN P F T+ V + EN + + ATD D G N++I + S+ + ++ F ++ +G I + LDRE+ +++ V+A+D + R A V ++V DVND P I N +T + EN P+ T I + TD D NG+ F L P FS+ F LL N + L D ES + +++++ D G+ L+ + IK+ DENDN+P T +TVS E+ NSP + + +D D GPN ++ Y + + F L+ + + + + +++L T++AKD G PP ++ + V +IDQN
Sbjct: 140 YEVEVAILPDEIFRLVKIRFLIEDINDNAPLFPATVINISIPENSAINSKYTLPAAVDPDVGI--NGVQNYELIKSQNIFGLDVIE-TPEGDKMPQLIVQKELDREE--KDTYVMKVKVEDGGFPQR-SSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVLASDGGLMPAR----AMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLRP-VFSNQF-LLENAAYL-----DYESTKE--YAIKLLAADAGKP-PLNQSAMLFIKVKDENDNAPVF-----------------TQSFVTVSIPEN-NSPGIQLMKVSATDADSGPNAEIN-----YLLGPDAPPEFSLDRRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVS-------IIDQN 596 HSP 3 Score: 95.5153 bits (236), Expect = 4.172e-19 Identity = 141/585 (24.10%), Postives = 230/585 (39.32%), Query Frame = 3
Query: 849 ITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKD----KTSRLQFIIVPTI-NVEIAKTFAISDQGIIYLIKHLDYETAPKYEIPVRVTDGEF---SSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRF---DITENNSERTKKIN-----IYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYV------VRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADI 2537
I +I+DINDN P F ++ + I EN +N + A D D + I I +++ +T + + K LD E Y + V+V DG F SS ++V + D ND P F + I EN T + + D D N + F ++ N + R +N I + + +DR++ + ++ +D G+ A V + V D NDN P + V V + EN+ + ++ TDKD N ++ F + + N + LD E Y + ++A D + + A + I V D ND AP +S T S+ EN G + K+ ATD D G N + + L P A + G L DRE + K+ I +D G L+S V + I+D+NDNSP + +N + V + + + T +D D G N V S+ L N F ++ I+ S+ + + + A+D G R +S + + D+
Sbjct: 157 IRFLIEDINDNAPLFPATVINISIPENSAINSKYTLPAAVDPDVGINGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLHATDADIGE------------NAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLL--VLASDGGL---MPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLRPVFSNQFLLENAAYLDYESTKEYAIKLLAADAGKPPLNQS--AMLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLMKVSATDADSGPNAEINYLLGPDAPPEFSLDRRTGMLTVVKKLDRE--KEDKYLFTILAKDNGVP-PLTSNVTVFVSIIDQNDNSP--------VFTHN-------EYKFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSI------LDENDDFTIDSQTGVIRPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDV 698
BLAST of Protocadherin gamma vs. Ensembl Human
Match: PCDH11Y (protocadherin 11 Y-linked [Source:HGNC Symbol;Acc:HGNC:15813]) HSP 1 Score: 207.994 bits (528), Expect = 9.820e-54 Identity = 218/804 (27.11%), Postives = 355/804 (44.15%), Query Frame = 3
Query: 243 YWIKENQPPGLVVGNLLDNL-----PYKQYFISPGYHFVLQKESEEFFSLKPGSS-MLTTSKLIDLESLCGS----SDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSID----LPRAFDKDLSLINNQISYSLQETSTYFHFSV----SKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKD--KTSRLQFIIVPTINVEIAKTFAI-SDQGIIYLIKHLDYETAPKYEIPVRVTDGEF-SSNGRVEVVIIDVNDCAP----QFTLNPEN--LVISENTLTKTLLGNIVVYDQDS-------AYVDSGIECREGSPNDAMRFDITENNS----ERTKKINI-YLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFAD 2534
Y I+E P +++GNLL +L P K + + V + ++ + + TT ID E LC C+ ++V ++ D+ F + ++I ++ED+NDN P F +I E +I+ LP A D D+ IN +Y L ++ F V D P LI+ KELD E DT+ + + + +P R + ++ + + + D NDN P F ++ V I EN + + QL ATD D + +++ F ++ + F + + G+I + + LD E P +++ V +DG + V V + DVND P ++ +NP N +V+SEN T + I V D+D+ + D I R P + +F + EN + E TK+ I L + + +N + + ++ NDN+P FT + V + EN P L+ VSATD D G N++I Y + + F +D +G + ++ LDREK+D Y T++A D + + TS TV + +ID ND +P + F V EN P +G + TD D G N +++ + T G + +SFDRE Q ++ + D G + SS V I ++D NDN P V P YNYS V + + + +F D D G N +V +S+ + + LF ++ I L +D V + A D G P S VI+ F +
Sbjct: 60 YTIREEIPENVLIGNLLKDLNLSLIPNKSLTTTMQFKLVYKTGDVPLIRIEEDTGEIFTTGARIDREKLCAGIPRDEHCF-----YEVEVAILPDEIF-RLVKIRFLIEDINDNAPLFPATVINISIPE-----NSAINSKYTLPAAVDPDVG-INGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAI-LQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVLASDGGLMPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRL-RPVFSNQF-LLENAAYLDYESTKEYAIKLLAADAGKPPLNQSAMLFIKVKDE--------------------NDNAPVFTQSFVTVSIPENNSPGIQLMKVSATDADSGPNAEINYLLGPDAPPE-FSLDRRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPL--TSNVTVFVSIIDQNDNSPVFTHNEYKFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQT-GVIRPNISFDRE--KQESYTFYVKAED-GGRVSRSSSAKVTINVVDVNDNKPVFIVPP-----YNYSYE-------LVLPSTNPGTVVFQVIAVDNDTGMNAEVRYSI----VGGNTRDLFAIDQETGNITLMEKCDVTDLGLHRVLVKANDLGQPDSLFSVVIVNLFVN 805 HSP 2 Score: 112.079 bits (279), Expect = 3.716e-24 Identity = 135/507 (26.63%), Postives = 226/507 (44.58%), Query Frame = 3
Query: 1104 YEIPVRVTDGEFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREG-SPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISD---HTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRI------NESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFI--------FTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSP---IFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADIPPRLIDQN 2561
YE+ V + E ++ +I D+ND AP F N+ I EN+ + D D +G++ E + D+ E E K + + +E+DR++ D + D G R ++T + ++V D NDN P F T+ V + EN + + ATD D G N++I + S+ + ++ F ++ +G I + LDRE+ +++ V+A+D + R A V ++V DVND P I N +T + EN P+ T I + TD D NG+ F L P FS+ F LL N + L D ES + +++++ D G+ L+ + IK+ DENDN+P T +TVS E+ NSP + + +D D GPN ++ Y + + F L+ + + + + +++L T++AKD G PP ++ + V +IDQN
Sbjct: 140 YEVEVAILPDEIFRLVKIRFLIEDINDNAPLFPATVINISIPENSAINSKYTLPAAVDPDVGI--NGVQNYELIKSQNIFGLDVIE-TPEGDKMPQLIVQKELDREE--KDTYVMKVKVEDGGFPQR-SSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVLASDGGLMPAR----AMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLRP-VFSNQF-LLENAAYL-----DYESTKE--YAIKLLAADAGKP-PLNQSAMLFIKVKDENDNAPVF-----------------TQSFVTVSIPEN-NSPGIQLMKVSATDADSGPNAEIN-----YLLGPDAPPEFSLDRRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVS-------IIDQN 596 HSP 3 Score: 97.4413 bits (241), Expect = 1.125e-19 Identity = 141/585 (24.10%), Postives = 230/585 (39.32%), Query Frame = 3
Query: 849 ITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKD----KTSRLQFIIVPTI-NVEIAKTFAISDQGIIYLIKHLDYETAPKYEIPVRVTDGEF---SSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRF---DITENNSERTKKIN-----IYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYV------VRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADI 2537
I +I+DINDN P F ++ + I EN +N + A D D + I I +++ +T + + K LD E Y + V+V DG F SS ++V + D ND P F + I EN T + + D D N + F ++ N + R +N I + + +DR++ + ++ +D G+ A V + V D NDN P + V V + EN+ + ++ TDKD N ++ F + + N + LD E Y + ++A D + + A + I V D ND AP +S T S+ EN G + K+ ATD D G N + + L P A + G L DRE + K+ I +D G L+S V + I+D+NDNSP + +N + V + + + T +D D G N V S+ L N F ++ I+ S+ + + + A+D G R +S + + D+
Sbjct: 157 IRFLIEDINDNAPLFPATVINISIPENSAINSKYTLPAAVDPDVGINGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLHATDADIGE------------NAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLL--VLASDGGL---MPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLRPVFSNQFLLENAAYLDYESTKEYAIKLLAADAGKPPLNQS--AMLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLMKVSATDADSGPNAEINYLLGPDAPPEFSLDRRTGMLTVVKKLDRE--KEDKYLFTILAKDNGVP-PLTSNVTVFVSIIDQNDNSP--------VFTHN-------EYKFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSI------LDENDDFTIDSQTGVIRPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDV 698
BLAST of Protocadherin gamma vs. Ensembl Human
Match: PCDH11Y (protocadherin 11 Y-linked [Source:HGNC Symbol;Acc:HGNC:15813]) HSP 1 Score: 206.838 bits (525), Expect = 1.116e-53 Identity = 217/800 (27.12%), Postives = 352/800 (44.00%), Query Frame = 3
Query: 243 YWIKENQPPGLVVGNLLDNL-----PYKQYFISPGYHFVLQKESEEFFSLKPGSS-MLTTSKLIDLESLCGS----SDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSV----SKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKD--KTSRLQFIIVPTINVEIAKTFAI-SDQGIIYLIKHLDYETAPKYEIPVRVTDGEF-SSNGRVEVVIIDVNDCAP----QFTLNPEN--LVISENTLTKTLLGNIVVYDQDS-------AYVDSGIECREGSPNDAMRFDITENNS----ERTKKINI-YLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFAD 2534
Y I+E P +++GNLL +L P K + + V + ++ + + TT ID E LC C+ ++V ++ D+ F + ++I ++ED+NDN P F +I E LP A D D+ IN +Y L ++ F V D P LI+ KELD E DT+ + + + +P R + ++ + + + D NDN P F ++ V I EN + + QL ATD D + +++ F ++ + F + + G+I + + LD E P +++ V +DG + V V + DVND P ++ +NP N +V+SEN T + I V D+D+ + D I R P + +F + EN + E TK+ I L + + +N + + ++ NDN+P FT + V + EN P L+ VSATD D G N++I Y + + F +D +G + ++ LDREK+D Y T++A D + + TS TV + +ID ND +P + F V EN P +G + TD D G N +++ + T G + +SFDRE Q ++ + D G + SS V I ++D NDN P V P YNYS V + + + +F D D G N +V +S+ + + LF ++ I L +D V + A D G P S VI+ F +
Sbjct: 60 YTIREEIPENVLIGNLLKDLNLSLIPNKSLTTTMQFKLVYKTGDVPLIRIEEDTGEIFTTGARIDREKLCAGIPRDEHCF-----YEVEVAILPDEIF-RLVKIRFLIEDINDNAPLFPATVINISIPE-NSAINSKYTLPAAVDPDVG-INGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAI-LQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVLASDGGLMPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRL-RPVFSNQF-LLENAAYLDYESTKEYAIKLLAADAGKPPLNQSAMLFIKVKDE--------------------NDNAPVFTQSFVTVSIPENNSPGIQLMKVSATDADSGPNAEINYLLGPDAPPE-FSLDRRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPL--TSNVTVFVSIIDQNDNSPVFTHNEYKFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQT-GVIRPNISFDRE--KQESYTFYVKAED-GGRVSRSSSAKVTINVVDVNDNKPVFIVPP-----YNYSYE-------LVLPSTNPGTVVFQVIAVDNDTGMNAEVRYSI----VGGNTRDLFAIDQETGNITLMEKCDVTDLGLHRVLVKANDLGQPDSLFSVVIVNLFVN 805 HSP 2 Score: 95.5153 bits (236), Expect = 4.518e-19 Identity = 141/585 (24.10%), Postives = 230/585 (39.32%), Query Frame = 3
Query: 849 ITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKD----KTSRLQFIIVPTI-NVEIAKTFAISDQGIIYLIKHLDYETAPKYEIPVRVTDGEF---SSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRF---DITENNSERTKKIN-----IYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYV------VRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADI 2537
I +I+DINDN P F ++ + I EN +N + A D D + I I +++ +T + + K LD E Y + V+V DG F SS ++V + D ND P F + I EN T + + D D N + F ++ N + R +N I + + +DR++ + ++ +D G+ A V + V D NDN P + V V + EN+ + ++ TDKD N ++ F + + N + LD E Y + ++A D + + A + I V D ND AP +S T S+ EN G + K+ ATD D G N + + L P A + G L DRE + K+ I +D G L+S V + I+D+NDNSP + +N + V + + + T +D D G N V S+ L N F ++ I+ S+ + + + A+D G R +S + + D+
Sbjct: 157 IRFLIEDINDNAPLFPATVINISIPENSAINSKYTLPAAVDPDVGINGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLHATDADIGE------------NAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLL--VLASDGGL---MPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLRPVFSNQFLLENAAYLDYESTKEYAIKLLAADAGKPPLNQS--AMLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLMKVSATDADSGPNAEINYLLGPDAPPEFSLDRRTGMLTVVKKLDRE--KEDKYLFTILAKDNGVP-PLTSNVTVFVSIIDQNDNSP--------VFTHN-------EYKFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSI------LDENDDFTIDSQTGVIRPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDV 698
BLAST of Protocadherin gamma vs. Ensembl Celegans
Match: fmi-1 (FlaMIngo (Cadherin plus 7TM domain) homolog [Source:UniProtKB/TrEMBL;Acc:A0A0K3AUS4]) HSP 1 Score: 153.295 bits (386), Expect = 4.334e-37 Identity = 165/583 (28.30%), Postives = 260/583 (44.60%), Query Frame = 3
Query: 516 LRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAISDQGIIYLIKHLDYETAPKYEIPVRVTD-GEFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRR-FSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQ---QYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGS------LLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDN 2231
L IN+I D+ND+ P A ++E + G+ + A D+D S N I YS++ + F + +D ++ K LD ET + L + A + PS T S I +V+ DINDN P F + Y V I E + QI+ LKA D D+ ++ + I + E+ I DQG I + K + + TD G V V I DVN AP F +P ++ I E++ + + D D G R D+ +F + +S +I ++ ++DR+ DR FSVI+ + + + + + D NDNSPQFT + Y + E++ + VSA D D G N + YF+++ + Q F++D SG + LDRE+ + + A D + S T+ + DVND AP + + EN P+G+ +G ++A D D G N F + A + F++ + +LT+ FD E+ + KF + LSS V I + D NDN P + DF+ N DN
Sbjct: 465 LTINVI--DINDHAPTLIAAQKMITLEENV-AIGEEVGRVYAIDED-SGPNGIIKYSMEGSE---DFIIDEDSG-LIKTTKLLDRETTARYSLKVTARDMGTPSLNT-STTIAVVLKDINDNAPTFDKKEYNVTISEEMPRGSQIITLKAVDNDEDQKITYRI-EEADREVFSILDIGDQGAILSVSGELKRQDHKVRVEISATDQGGLQGRCVVNVFIDDVNS-APYFNDHPFSVKIPEHSPIGYPVITLKAEDH-----DRGDNARIVYSIDSSQFFRIDPSSG-----DISVSSDLDRE----DRATFSVIVTASDHASPPLNTSTQIEVILDDINDNSPQFTSSSYAATISEDIPVGTSFLQVSAIDADIGPNGIVDYFLNESSSSPSIQLFRLDRTSGTLRVSSKLDREQFAVIVLPIFARDRGTPSLSAASEITLTLS--DVNDNAPTFEQLSYDLYIAENSPVGSTVGTIVARDADEGDNADISFRIFGGADAKLFDIEEDAEQNGVVRILTRAEFDYEAKAN-KFFFELQ----ASSGQLSSTVPVRIHVSDVNDNKPALK---DFVILMNRFDN 1012 HSP 2 Score: 146.362 bits (368), Expect = 6.912e-35 Identity = 203/797 (25.47%), Postives = 356/797 (44.67%), Query Frame = 3
Query: 210 DSSSLSFGTIKYWIKENQPPGLVVGNLLDNLPYKQYFISPGYHFVLQKE---SEEFFSLKPGSSMLTTSKLIDLESLCGSSDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDL-SLINNQISYSLQETSTYFHFSV-SKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSR-PTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAISDQGIIY------LIKHLDYETAPKYEIPVRVTDG---EFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGI--ECREGSPNDAMRFDITENNSE-RTKKINIYLNQEIDRDQINGDRRFSV-IICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKID-ENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFEL-LTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADI 2537
D++++ F KY +KE P + ++ ++ P Y+ ++ + S+ F+L S + +K +D E L +V A D + + V DV DN P F+ SY I+E P + L F +DL S N +I YSL E + ++ +K G ++ LD ET+ RL +IA ++ P R TA + IT+V D+NDN P F+ Y V ILEN+ + I +KATD+D F ++ +A + I I Y L + +D + +P + +R DG SS + + +ID+ND AP + + + EN +G + D+DS +GI EGS + F I E++ +T K+ +DR+ R+S+ + DMG + + T+ + + D NDN+P F +Y V + E + +I + A D D+ + +I Y I + + + +D + G I+ + + + +V + ATD + R V++ + DVN AP N+ + + E+ PIG + L A D D G N + ++++ S F F + ++G + DRE + FS+ +T D L++ T + + + D NDNSP+ + ++ + T+S+ + + D D GPNG V + + S S QLF L+ T +++ + ++ + A+D+G+P + I + +D+
Sbjct: 159 DANAVHFQQEKY-VKE-LPEDTPIETIIASVKASHASSQPLYYSMVAPQDSRSQNLFTLDTMSGEIRLAKSMDREVL--------DKHILKVTAYERVDPTISASTTVVVHVLDVQDNSPIFEKDSYFGEIRE--DAPIGTTVL-SVFARDLDSGENGEIEYSLGEGNGKNLLAINAKSG--VIQTAAPLDRETLSLIRLDVIASDKGTPKRESTAMVEITVV--DVNDNAPVFASDSYNVTILENITIPAVIATVKATDED------FGTNGKVHYSMASSSGIGGLTIDYSTGEVTLRERIDAKNSPITAV-IRAKDGAQPALSSTVPLTINVIDINDHAPTLIAAQKMITLEENVAIGEEVGRVYAIDEDSG--PNGIIKYSMEGSED----FIIDEDSGLIKTTKL-------LDRETT---ARYSLKVTARDMGTPS-LNTSTTIAVVLKDINDNAPTFDKKEYNVTISEEMPRGSQIITLKAVDNDE--DQKITYRIEEADREVFSILDIGDQGAILSVSGELKRQDHKVRVEISATDQGGLQGR----CVVNVFIDDVNS-APYFNDHPFSVKIPEHSPIGYPVITLKAEDHDRGDNARIVYSIDSSQF---FRIDPSSGDISVSSDLDRE--DRATFSVIVTASDHASP-PLNTSTQIEVILDDINDNSPQFT---------------SSSYAATISEDIPVGTSFLQVSAIDADIGPNGIVDYFLN-ESSSSPSIQLFRLDRTSGTLRVSSKLDREQFAVIVLPIFARDRGTPSLSAASEITLTLSDV 885 HSP 3 Score: 101.293 bits (251), Expect = 3.536e-21 Identity = 141/557 (25.31%), Postives = 246/557 (44.17%), Query Frame = 3
Query: 354 ESEEFFSLKPGSSMLTTSKLIDLESLCGSSDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQET-STYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAIS-DQGIIYLIKHLDYETAPKYEIPVRVTDGE---FSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQD---SAYVDSGIECREGSPN-DAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVII----CNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDY-YQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTL 1982
E E F + S ++ T+KL+D E+ S +V A M I ++++D+NDN P F Y I E + + I L +A D D + +I+Y ++E F D IL + EL + R+ + A +Q + + IDD+N + P F+ + V I E+ + + ++ LKA D D+ + + +++ ++ F I G I + LD E + + V +D +++ ++EV++ D+ND +PQFT + ISE+ T + D D + VD + SP+ R D T + ++ ++DR+Q F+VI+ D G + +A +TLT+ D NDN+P F Y + + EN + + A D D+G N+ I + I + F I+E++ + ++ L R + DY + +L + + +ST V IHV DVND P + + + + ++N + IG + A D D QN + L
Sbjct: 519 EGSEDFIIDEDSGLIKTTKLLDRETTARYS--------LKVTARDMGTPSLNTSTTIAVVLKDINDNAPTFDKKEYNVTISEEMPRGSQIITL-KAVDNDE---DQKITYRIEEADREVFSILDIGDQGAILSVSGELKRQDHKV-RVEISATDQG---GLQGRCVVNVFIDDVN-SAPYFNDHPFSVKIPEHSPIGYPVITLKAEDHDRGDNARIVY----SIDSSQFFRIDPSSGDISVSSDLDREDRATFSVIVTASDHASPPLNTSTQIEVILDDINDNSPQFTSSSYAATISEDIPVGTSFLQVSAIDADIGPNGIVDYFLNESSSSPSIQLFRLDRTSGT--------LRVSSKLDREQ------FAVIVLPIFARDRGTPS-LSAASEITLTLSDVNDNAPTFEQLSYDLYIAENSPVGSTVGTIVARDADEGDNADISFRIFGGADAKLFDIEEDAEQNGVVRILTRAEFDYEAKANKFFFELQASSGQLSSTVPVRIHVSDVNDNKPALKDFVILMNRFDNVQMARQIGFIPAFDPD--QNATLEYFL 1037
BLAST of Protocadherin gamma vs. Ensembl Celegans
Match: fmi-1 (FlaMIngo (Cadherin plus 7TM domain) homolog [Source:UniProtKB/TrEMBL;Acc:A0A0K3AUS4]) HSP 1 Score: 153.295 bits (386), Expect = 4.970e-37 Identity = 165/583 (28.30%), Postives = 260/583 (44.60%), Query Frame = 3
Query: 516 LRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAISDQGIIYLIKHLDYETAPKYEIPVRVTD-GEFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRR-FSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQ---QYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGS------LLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDN 2231
L IN+I D+ND+ P A ++E + G+ + A D+D S N I YS++ + F + +D ++ K LD ET + L + A + PS T S I +V+ DINDN P F + Y V I E + QI+ LKA D D+ ++ + I + E+ I DQG I + K + + TD G V V I DVN AP F +P ++ I E++ + + D D G R D+ +F + +S +I ++ ++DR+ DR FSVI+ + + + + + D NDNSPQFT + Y + E++ + VSA D D G N + YF+++ + Q F++D SG + LDRE+ + + A D + S T+ + DVND AP + + EN P+G+ +G ++A D D G N F + A + F++ + +LT+ FD E+ + KF + LSS V I + D NDN P + DF+ N DN
Sbjct: 106 LTINVI--DINDHAPTLIAAQKMITLEENV-AIGEEVGRVYAIDED-SGPNGIIKYSMEGSE---DFIIDEDSG-LIKTTKLLDRETTARYSLKVTARDMGTPSLNT-STTIAVVLKDINDNAPTFDKKEYNVTISEEMPRGSQIITLKAVDNDEDQKITYRI-EEADREVFSILDIGDQGAILSVSGELKRQDHKVRVEISATDQGGLQGRCVVNVFIDDVNS-APYFNDHPFSVKIPEHSPIGYPVITLKAEDH-----DRGDNARIVYSIDSSQFFRIDPSSG-----DISVSSDLDRE----DRATFSVIVTASDHASPPLNTSTQIEVILDDINDNSPQFTSSSYAATISEDIPVGTSFLQVSAIDADIGPNGIVDYFLNESSSSPSIQLFRLDRTSGTLRVSSKLDREQFAVIVLPIFARDRGTPSLSAASEITLTLS--DVNDNAPTFEQLSYDLYIAENSPVGSTVGTIVARDADEGDNADISFRIFGGADAKLFDIEEDAEQNGVVRILTRAEFDYEAKAN-KFFFELQ----ASSGQLSSTVPVRIHVSDVNDNKPALK---DFVILMNRFDN 653 HSP 2 Score: 139.428 bits (350), Expect = 9.110e-33 Identity = 177/709 (24.96%), Postives = 310/709 (43.72%), Query Frame = 3
Query: 522 INIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAI-SDQGIIYLIKHLDYETAPKYEIPVRVTD---GEFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINI-------YLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELL----TNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSM------KIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADIPPRLIDQNISMGSFSN 2585
+ I V DVNDN P F + SY I E I P I +A D+D N ++ YS+ +S ++ + + + +DA+ +I A + P+ ++++P+TI + DIND+ P + + + ENV + ++ ++ A D+D S II ++E ++ F I D G+I K LD ET +Y + V D +++ + VV+ D+ND AP F N+ ISE + + + D D + + + I E + E ++I ++ E+ R + R + + G+ R + +++P F + V++ E+ YP+I + A D D G N++I Y I Q+F+ID +SG I LDRE + + V V A+D A + +TST + + + D+ND +P+ S ++ E+ P+GT ++ A D DIG NG + L S+ S +L T+G+L DRE + + L I RD G LS+ + + + + D NDN+P + +Y+ + +++ S + D D+G N ++F + K++ I + Q + + +A ++ N+F L A ++ + D P L D I M F N
Sbjct: 2 VEITVVDVNDNAPVFASDSYNVTILENITIPA-VIATVKATDEDFG-TNGKVHYSMASSSGIGGLTIDYSTGEV-TLRERIDAKNSPITAVIR-AKDGAQPAL-SSTVPLTINVIDINDHAPTLIAAQKMITLEENVAIGEEVGRVYAIDED--SGPNGII--KYSMEGSEDFIIDEDSGLIKTTKLLDRETTARYSLKVTARDMGTPSLNTSTTIAVVLKDINDNAPTFDKKEYNVTISEEMPRGSQIITLKAVDNDE--------------DQKITYRIEEADREVFSILDIGDQGAILSVSGELKRQ--DHKVRVEISATDQGGLQGRCVVNVFIDDV-----NSAPYFNDHPFSVKIPEHSPIGYPVITLKAEDHDRGDNARIVYSIDS---SQFFRIDPSSGDISVSSDLDREDRATFSVIVTASDHASPPL-NTST-QIEVILDDINDNSPQFTSSSYAATISEDIPVGTSFLQVSAIDADIGPNGIVDYFLNESSSSPSIQLFRLDRTSGTLRVSSKLDREQFAVI--VLPIFARDRGTP-SLSAASEITLTLSDVNDNAPTFEQL-----SYD----------LYIAENSPVGSTVGTIVARDADEGDNADISFRIFGGADAKLFDIEEDAEQNGVVRILTRA----EFDYEAKANKFFFELQASSGQLSSTVPVRIHVSDVNDNKPALKDFVILMNRFDN 653 HSP 3 Score: 101.293 bits (251), Expect = 4.016e-21 Identity = 140/557 (25.13%), Postives = 245/557 (43.99%), Query Frame = 3
Query: 354 ESEEFFSLKPGSSMLTTSKLIDLESLCGSSDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQET-STYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAIS-DQGIIYLIKHLDYETAPKYEIPVRVTDGE---FSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQD---SAYVDSGIECREGSPN-DAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVII----CNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDY-YQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTL 1982
E E F + S ++ T+KL+D E+ +V A M I ++++D+NDN P F Y I E + + I L +A D D + +I+Y ++E F D IL + EL + R+ + A +Q + + IDD+N + P F+ + V I E+ + + ++ LKA D D+ + + +++ ++ F I G I + LD E + + V +D +++ ++EV++ D+ND +PQFT + ISE+ T + D D + VD + SP+ R D T + ++ ++DR+Q F+VI+ D G + +A +TLT+ D NDN+P F Y + + EN + + A D D+G N+ I + I + F I+E++ + ++ L R + DY + +L + + +ST V IHV DVND P + + + + ++N + IG + A D D QN + L
Sbjct: 160 EGSEDFIIDEDSGLIKTTKLLDRET--------TARYSLKVTARDMGTPSLNTSTTIAVVLKDINDNAPTFDKKEYNVTISEEMPRGSQIITL-KAVDNDE---DQKITYRIEEADREVFSILDIGDQGAILSVSGELKRQDHKV-RVEISATDQG---GLQGRCVVNVFIDDVN-SAPYFNDHPFSVKIPEHSPIGYPVITLKAEDHDRGDNARIVY----SIDSSQFFRIDPSSGDISVSSDLDREDRATFSVIVTASDHASPPLNTSTQIEVILDDINDNSPQFTSSSYAATISEDIPVGTSFLQVSAIDADIGPNGIVDYFLNESSSSPSIQLFRLDRTSGT--------LRVSSKLDREQ------FAVIVLPIFARDRGTPS-LSAASEITLTLSDVNDNAPTFEQLSYDLYIAENSPVGSTVGTIVARDADEGDNADISFRIFGGADAKLFDIEEDAEQNGVVRILTRAEFDYEAKANKFFFELQASSGQLSSTVPVRIHVSDVNDNKPALKDFVILMNRFDNVQMARQIGFIPAFDPD--QNATLEYFL 678
BLAST of Protocadherin gamma vs. Ensembl Celegans
Match: hmr-1 (Cadherin-related hmr-1 [Source:UniProtKB/Swiss-Prot;Acc:Q967F4]) HSP 1 Score: 149.058 bits (375), Expect = 1.029e-35 Identity = 185/617 (29.98%), Postives = 278/617 (45.06%), Query Frame = 3
Query: 474 VVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKE-------IIYGPGKSIDLPRAFDKDLSLINNQISYSL------QETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLP------ITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAI-SDQGIIYLIKHLDYETAPKYEIPVRVTDGEFSSNGRVEVVIIDVNDCAPQFTLNP-ENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECR-EGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQING--DRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQF--TLTDYVVRVKENLKPQYP----LIDVSATDKDDGV--NSQIKYFISDH---THQQYFKIDENSGKIIGIQSLDRE--KQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTN--------GSLLTKVSFDRESLSQV-KFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKI 2186
+ + V K F+ E+R DVND P F +T I E + GK I +A D D N++ Y + +ET HF + + I K D E ID + L + A +++ + P A+ P + IVI+D+NDN P F + Y + E+ H ++ +KA D DK S L++ ++ I F + +D G I++ + LD+E + +Y + + +DG ++ V + I DVND APQF VI E+ +L N+ D D S I R EG D + F I + + I L + +DRD G F V +D G N V + V D NDNSP F L Y ++EN +P + +DV A D DD N+ I+Y I + + F+ID+N+GKI ++SLDRE + + + V A D + A V I V D+ND AP ++ SV E PIG + A D D + +FT S S YF + T+ G L K D E ++Q F L I V D + ++ AV + ++D ND++P I
Sbjct: 1187 MTSRVASTKTFVVEVR------DVNDVVPQFTVDLFTGTIDEEMTPNEHLEKTNGKPIVTVKAIDTDSDGPQNEVHYRIVGEANGEETK---HFRIDELTGEIFPNEK-FDREKIDMYILTVEASDRSVSALPGANGPNKDNVKVQIVINDVNDNAPSFEEQKYIGRVKESEGEGHDVITIKAHDLDKHSNLRYHLIGAGGGRIP--FGVRTDSGTIFVKEPLDFEASDQYHLVLIASDGRHNATTNVYIHIEDVNDNAPQFEQQKYATTVIEEDVDIPKVLFNVHATDADQDEKSSRIVYRLEGQGADEV-FRIGKYSG------TIELVKALDRDPPAGVPSWNFVVQAIDDDG--NGLVGYADVQVNVRDINDNSPIFPERLFGY---IEENREPIHSDGVYFMDVQARDFDDPTTENANIEYGIVRNKLINGESVFRIDQNTGKIFAMRSLDREISSEREFIIEVRANDRGVPS--REGFANVTIKVTDMNDNAPFFEKTRYEGSVEETAPIGAAVMSFSAFDAD-EEAKDNVFTYQLSEESDYFYVTTDKDSKQSSVGVLRVKQPLDYEDVTQRDGFHLGIRVSDGRHD----AEAAVHVALVDRNDHAPHI 1772 HSP 2 Score: 139.428 bits (350), Expect = 7.822e-33 Identity = 180/660 (27.27%), Postives = 285/660 (43.18%), Query Frame = 3
Query: 516 LRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKE-LDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILE-NVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAISD-QGIIYLIKHLDYE---TAPKYEIPVRVTDGEFSSNG-----RVEVVIIDVNDCAPQFTLNPENLV--ISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITEN---NSERTKKIN-----IYLNQEIDRDQINGDRRFSV-IICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQI-KYFISDHTHQQYFKIDENSGKI-IGI----QSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPD-FIAAYNYSDNNTTDCSITVSKTESTN---------SPIFPFT------FSDLDDGPNGQVAFSMKIYPI 2363
+++ I++ DVNDN P F+ Y +KE G+ D+ DL +N + + F V D I + KE LD E D + L+LIA + R A+ + I I+D+NDN P+F Q Y ++E +V++ + + ATD D+ + I+ + F I G I L+K LD + P + V+ D + NG V+V + D+ND +P F PE L I EN + + + VY D D E N + + I N N E +I+ I+ + +DR +I+ +R F + + ND G+ +R NDN+P F T Y V+E ++ SA D D+ + Y +S+ + Y D++S + +G+ Q LD E D Q + +++ RH + A VH+ ++D ND AP I+ + V E+ P GT IG+ ATD D G +F S F + +G+L + DRE ++ ++L I D I + V + + D NDN P+ +P I N N C I + ++ SP F ++ F+ DG NG SM I P+
Sbjct: 1319 VKVQIVINDVNDNAPSFEEQKYIGRVKE---SEGEGHDVITIKAHDLDKHSNLRYHLIGAGGGRIPFGVRTDSGTIFV--KEPLDFEASDQYHLVLIASD----GRHNATTNVYIHIEDVNDNAPQFEQQKYATTVIEEDVDIPKVLFNVHATDADQDEKSSRIVYRLEGQGADEVFRIGKYSGTIELVKALDRDPPAGVPSWNFVVQAIDDD--GNGLVGYADVQVNVRDINDNSPIF---PERLFGYIEEN---REPIHSDGVYFMDVQARDFDDPTTE---NANIEYGIVRNKLINGESVFRIDQNTGKIFAMRSLDR-EISSEREFIIEVRANDRGVPSREGFANVTIKVTDM-NDNAPFFEKTRYEGSVEETAPIGAAVMSFSAFDADEEAKDNVFTYQLSEESDYFYVTTDKDSKQSSVGVLRVKQPLDYE--DVTQRDGFHLGIRVSDGRHDAEAAVHVALVDRNDHAPHIHGATE-HRVREDVPRGTSIGRYTATDRDAGDTARFRINR-QSDPKRQFTIDQDGTLRVAHTLDREDIA--VYNLIIEAYDNSNNI---GRQMVAVYLQDVNDNGPEPYTVPRPCIFRENTPVNQLGTCEIRATDRDTAEFGPPFTMEVSPSFKYSQYLNVIFNANGDGGNG----SMTITPL 1943 HSP 3 Score: 119.783 bits (299), Expect = 9.665e-27 Identity = 193/800 (24.12%), Postives = 331/800 (41.38%), Query Frame = 3
Query: 339 FVLQKESEEFFSLKPGSSMLTTSK--LIDLESLCGSSDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETST----------YFHFSVSKDGKPILIIIKELDAETIDTHRLI--LIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVP---ILENVELNHQILQLKAT------DKDKTSRLQFIIVPTINVEIA-KTFAISDQG----IIYLIKHLDYETAPKYEIPVRVTD--GEFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENT-----LTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDIT-ENNSERTKKIN-------IYLNQEIDRDQIN--------GDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKY-FISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRI-NESLNTFSVYENQPIGTVIGKLIATDCDIGQ-NGKFIFTLIPSAFSHYFELLT-NGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIH-LSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDD--GPNGQVAFSM---------KIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADI 2537
+ Q ES + F + + +LT S + D E+ ++ V A D+ I + ++ V D+NDN P F+ SY ++ G S+ AFD D + N +I+YSL+ +T +F + G+ + +IK + + T + I +IA + P +S +T+ + D P++ S P + ENVELN IL+ +A + D +L P E + F + G + +++ LDYE Y + + TD +S V + DVND PQFT++ I E L KT IV I+ P + + + I E N E TK I+ N++ DR++I+ DR S + G N V + + D NDN+P F Y+ RVKE+ + +I + A D D +S ++Y I + F + +SG I + LD E D Y + ++A+D RH +T V+IH+ DVND AP+ + T + E+ I V+ + ATD D + + + ++ L F + +G++ + DR+ + V S V+ I ++ + L V + + D NDNSP + P+ + + Y + N S D DD N + + + ++ I + ++F + ++ I +R F++ + A D+G P RE + ++ D+
Sbjct: 910 YYTQSESRKAFVIDRQTGVLTPSPHVVFDRET--------RPREDVTVKATDRGDRPLIGFCQFSVEVVDINDNSPQFERPSYETSVSR-FEAVGTSVITVFAFDNDAAH-NAEITYSLEIDTTAGEEHQNDLDFFELVNRRSGE--ITLIKPI---PMKTQKFIFNVIADDNGIPEALQSSAQVTLNVLDKQQKAPKWQTSPDCKPGITVDENVELNKVILRCRAVSSGDSRNSDVIYKLTASGGPGNKAESKFRQFNKFENGNEWVEVVIMEGLDYEQVNNYTLTLTATDMTSRVASTKTFVVEVRDVNDVVPQFTVDLFTGTIDEEMTPNEHLEKTNGKPIVTV--------KAIDTDSDGPQNEVHYRIVGEANGEETKHFRIDELTGEIFPNEKFDREKIDMYILTVEASDRSVSAL----PGANGPNKDNVKVQIVINDVNDNAPSFEEQKYIGRVKESEGEGHDVITIKAHDLDK--HSNLRYHLIGAGGGRIPFGVRTDSGTIFVKEPLDFEASDQYHLVLIASDG-----RHNATTNVYIHIEDVNDNAPQFEQQKYATTVIEEDVDIPKVLFNVHATDADQDEKSSRIVYRLEGQGADEVFRIGKYSGTIELVKALDRDPPAGVP-SWNFVVQAIDDDGNGLVGYADVQVNVRDINDNSP---IFPERL--FGYIEENR-------EPIHSDGVYFMDVQARDFDDPTTENANIEYGIVRNKLINGESVFRIDQNTGKIFAMRSLDREISSER--------EFIIEVRANDRGVPSREGFANVTIKVTDM 1654 HSP 4 Score: 94.3597 bits (233), Expect = 5.350e-19 Identity = 153/606 (25.25%), Postives = 254/606 (41.91%), Query Frame = 3
Query: 528 IIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLP-----RAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKE---LDAETIDTHRLILIAWNQNYPSRPTASL-PITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAISDQ-------------GIIYLIKHLDYETAPKYEIPVRVTDG----EFSSNGRVEVVIIDVNDCAPQFTLNPE---NLVISENT-LTKTLLGNIVVYDQDSAYVDS--GIECREGSPNDA----MRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQ--------YPLIDVSATDKD-DGVNSQIKYFI---SDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTS-----TATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKI 2186
I +EDVN+N P F + + +I +I+ G K+ D P A D D S N I YSL T + + D + ++ D ET + + A ++ RP ++ + DINDN P+F + Y + + ++ + A D D + T ++EI T Q G I LIK + +T K+ V D S+ +V + ++D AP++ +P+ + + EN L K +L V DS D + G N A +F+ EN +E + + + + +D +Q+N + DM +R +T T + V D ND PQFT+ + + E + P P++ V A D D DG +++ Y I ++ ++F+IDE +G+I + DREK D Y +TV A+D +++ + + V I + DVND AP E V E++ G + + A D D N ++ + +G++ K D E+ Q L I + ++ T V I I D NDN+P+
Sbjct: 853 IGIEDVNNNKPEFPDCAKYSDIAKIMEGTYKT-DPPTIVKVEATDDDSSA-NGDIVYSLYYTQSESRKAFVIDRQTGVLTPSPHVVFDRETRPREDVTVKATDRG--DRPLIGFCQFSVEVVDINDNSPQFERPSYETSVSRFEAVGTSVITVFAFDNDAAHNAEI----TYSLEIDTTAGEEHQNDLDFFELVNRRSGEITLIKPIPMKTQ-KFIFNVIADDNGIPEALQSSAQVTLNVLDKQQKAPKWQTSPDCKPGITVDENVELNKVILRCRAVSSGDSRNSDVIYKLTASGGPGNKAESKFRQFNKFENGNEW---VEVVIMEGLDYEQVN--NYTLTLTATDM--TSRVASTKTFVVEVRDVNDVVPQFTVDLFTGTIDEEMTPNEHLEKTNGKPIVTVKAIDTDSDGPQNEVHYRIVGEANGEETKHFRIDELTGEIFPNEKFDREKIDMYILTVEASDRSVSALPGANGPNKDNVKVQIVINDVNDNAPSFEEQKYIGRVKESEGEGHDVITIKAHDLDKHSNLRYHLIGAGGGRIPFGVRTDSGTIFVKEPLDFEASDQYHLVL------IASDGRHNATTNVYIHIEDVNDNAPQF 1436 HSP 5 Score: 77.411 bits (189), Expect = 7.138e-14 Identity = 88/339 (25.96%), Postives = 143/339 (42.18%), Query Frame = 3
Query: 1524 NDNSPQFTLTDYVVRVKENLKPQYPLIDVSATD----KDDGVNSQIKYFISDHTHQ---QYFKIDENSGKIIGIQSLDREKQ---DYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLR--ITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFS-MKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSD----GNRFLVTLIAKDKGS 2489
++ PQF +Y V V E+ Y ++DV A +D I Y + T + ++F+ID ++G I + LD + +++ V A E S + I + DVND P L T V E+ P+ I K+ A D D G N + + S +H F + +NG + KV D + L++ F R +T RD GE + LSS + I+ + ND S F+ Y + V++ +P+ D D +V +S M S + LF ++ +KL+ +D N +T+I +D GS
Sbjct: 524 DERPPQFAKQEYEVTVSEDNLVDYSVVDVKAQSFRSFEDGRSKGPITYSLEGDTPEDETKWFRIDPSTGIIHLTRLLDFDDPALPKLHKLKVTA-----REDNRESHVDLTIRIDDVNDNVPTFTRPLYTAQVREDIPLNQTILKVTAVDKDTGDNSRITY----SVDNHNFSINSNGEISAKVRLDADQLNERHFVYRFNVTARDHGEPVSLSSSAMIHIRTENTNDESAV------FLPTSQY--------TAFVAEDAQGGTPVIQIQARDAD---RDEVTYSFMDKNGRSTQKMNLFSIDEHTGLVKLRHGVSAADLAEAENPINLTVIVQDDGS 836 HSP 6 Score: 76.6406 bits (187), Expect = 1.194e-13 Identity = 122/521 (23.42%), Postives = 207/521 (39.73%), Query Frame = 3
Query: 786 HRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDK--TSRLQFIIVPTINVEIAKTFAISDQGIIYLIKHLDYETAPK----YEIPVRVTD-GE---FSSNGRVEVVIIDVNDCAPQFTLNPE-NLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQE-------------IDRDQINGDRRFSVIICNDMGI----NNRXXXXXXXXXXXXXXNDNSPQF----TLTDYVVRVKENLKPQYP-LIDVSATDKDDGVNSQIKY--FISDHTHQQYFKIDENSGKIIGIQSL--DREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTL---IPSAFSH-----YFELLTNGS----LLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPD 2201
H+L + A N S + +TI IDD+NDN P F++ +Y + E++ LN IL++ A DKD SR+ + + F+I+ G I LD + + Y V D GE SS+ + + + ND + F + ++E+ T + I D D D + + + N T+K+N++ E D + +VI+ +D + T+ T+ + + D N+N P+F +D ++ K P ++ V ATD D N I Y + + ++ F ID +G + + DRE + VTV ATD + + V+D+ND +P+ SV + +GT + + A D D N + ++L + H +FEL+ S L+ + + KF + D G L S V + +LD+ +PK PD
Sbjct: 611 HKLKVTAREDNRESH----VDLTIRIDDVNDNVPTFTRPLYTAQVREDIPLNQTILKVTAVDKDTGDNSRITYSV-------DNHNFSINSNGEISAKVRLDADQLNERHFVYRFNVTARDHGEPVSLSSSAMIHIRTENTNDESAVFLPTSQYTAFVAEDAQGGTPVIQIQARDAD---------------RDEVTYSFMDKNGRSTQKMNLFSIDEHTGLVKLRHGVSAADLAEAENPINLTVIVQDDGSCCVYPSKTHTSYATLLIGIEDVNNNKPEFPDCAKYSDIAKIMEGTYKTDPPTIVKVEATDDDSSANGDIVYSLYYTQSESRKAFVIDRQTGVLTPSPHVVFDRETRPREDVTVKATDRGDRPL--IGFCQFSVEVVDINDNSPQFERPSYETSVSRFEAVGTSVITVFAFDNDAAHNAEITYSLEIDTTAGEEHQNDLDFFELVNRRSGEITLIKPIPMKTQ-----KFIFNVIADDNGIPEALQSSAQVTLNVLDKQQKAPKWQTSPD 1098 HSP 7 Score: 76.2554 bits (186), Expect = 1.462e-13 Identity = 156/653 (23.89%), Postives = 280/653 (42.88%), Query Frame = 3
Query: 333 YHFVLQKESEEFFSLKPGSSMLTTSKLIDLESLCGSSDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPR------AFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAE---TIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQ----ILQLKATDKD----KTSRLQFIIVPTINVEIAKTFAI-SDQGIIYLIKHLDYETAPKYE--IPVRVTD-GEFSSNG--RVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQF-TLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPI---GTVIGKLIATDCDIGQNG-KFIFTLIPS-AFSHYFELL-------TNGSL-LTKV-SFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNS 2177
YH + F ++ S + + +D E+ SD Y+ + L+ D + + I +EDVNDN P F+ Y + E + +D+P+ A D D +++I Y L+ F + K I ++K LD + + + ++ A + + + + + + DINDN P F + ++ I EN E H + ++A D D + + +++ IV + F I + G I+ ++ LD E + + E I VR D G S G V + + D+ND AP F + E + + +D D D+ + +D + T+ +S+++ + + Q +D + + F + I G R A V + ++D ND++P T++ RV+E++ + +ATD+D G ++ + +Q F ID++ G + +LDRE Y + + A D + N R V +++ DVND P EN P+ GT ++ ATD D + G F + PS +S Y ++ NGS+ +T + FDRE+ K L I + + + ++ +V + I D NDN+
Sbjct: 1370 YHLIGAGGGRIPFGVRTDSGTIFVKEPLDFEA----SDQYH-------LVLIASDGRHNATTNVYIHIEDVNDNAPQFEQQKYATTVIE------EDVDIPKVLFNVHATDADQDEKSSRIVYRLEGQGADEVFRIGKYSGTIE-LVKALDRDPPAGVPSWNFVVQAIDDD-GNGLVGYADVQVNVRDINDNSPIFPERLFGY-IEENREPIHSDGVYFMDVQARDFDDPTTENANIEYGIVRNKLINGESVFRIDQNTGKIFAMRSLDREISSEREFIIEVRANDRGVPSREGFANVTIKVTDMNDNAPFFEKTRYEGSVEETAPIGAAVMSFSAFDADEEAKDNVFTYQLSEESDYF-YVTTDKDSKQSSVGVLRVKQPLDYEDVTQRDGFHLGIRVSDG---RHDAEAAVHVALVDRNDHAPHIHGATEH--RVREDVPRGTSIGRYTATDRDAGDTARFRINRQSDPKRQ-FTIDQD-GTLRVAHTLDREDIAVYNLIIEAYDNSNNIGRQ----MVAVYLQDVNDNGPEPYTVPRPCIFRENTPVNQLGTC--EIRATDRDTAEFGPPFTMEVSPSFKYSQYLNVIFNANGDGGNGSMTITPLQEFDREAPVPGKI-LEIPLI-LADRAGRRNEASVHVIIGDLNDNT 1986 HSP 8 Score: 67.3958 bits (163), Expect = 8.930e-11 Identity = 167/735 (22.72%), Postives = 300/735 (40.82%), Query Frame = 3
Query: 351 KESEEFFSLKPGSSMLTTSKLIDLESLCGSSDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGP-GKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETID----THRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRF-SQSIYRVPILENVELNHQILQLKATDKDKTS-RLQFIIVPTINVEIAKTFAISDQ-GIIYLIKHLDYETAPKYEIPVRVT-----DGE--------FSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKI--NIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXX-------------------NDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFI-----SDHTHQQ---YFK-IDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNT---FSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPS------AFSHY--FELLTNGSLLTKV----SFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSK-TESTNS-PIFPFTFSDLD-DGPNGQVAFSM 2348
++ ++F + P + ++ ++L+D + + + + R+ + + I ++DVNDN P F YT ++E I P ++I A DKD N++I+YS+ +FS++ +G+ + LDA+ ++ +R + A + P ++S I I ++ ND F S Y + E+ + ++Q++A D D+ F+ + + F+I + G++ L + + E P+ +T DG +S + + I DVN+ P+F P+ S+ + K + G Y D P ++ + T+++S I ++Y Q R DR+ V+ + + +R T NDNSPQF Y V +I V A D D N++I Y + + HQ +F+ ++ SG+I I+ + + Q + V+A D I E S+A V ++V+D AP+ S + +V EN + VI + A +N I+ L S A S + F NG+ +V D E ++ ++L +T D+ + S+KT V +++ D ND P+ +V D T D +T ++ E TN PI D D DGP +V + +
Sbjct: 579 EDETKWFRIDPSTGIIHLTRLLDFDDPA--------LPKLHKLKVTAREDNRESHVDLTIRIDDVNDNVPTFTRPLYTAQVREDI--PLNQTILKVTAVDKDTG-DNSRITYSVDN----HNFSINSNGEISAKV--RLDADQLNERHFVYRFNVTARDHGEPVSLSSSAMIHIRTENTNDESAVFLPTSQYTAFVAEDAQGGTPVIQIQARDADRDEVTYSFMDKNGRSTQKMNLFSIDEHTGLVKLRHGVSAADLAEAENPINLTVIVQDDGSCCVYPSKTHTSYATLLIGIEDVNNNKPEF---PDCAKYSD--IAKIMEG---TYKTD--------------PPTIVKVEATDDDSSANGDIVYSLYYTQSESRKAFVIDRQTGVLTPSPHVVFDRETRPREDVTVKATDRGDRPLIGFCQFSVEVVDINDNSPQFERPSYETSVSRFEAVGTSVITVFAFDNDAAHNAEITYSLEIDTTAGEEHQNDLDFFELVNRRSGEITLIKPIPMKTQKFI-FNVIADDNGIPEALQ-SSAQVTLNVLDKQQKAPKWQTSPDCKPGITVDENVELNKVILRCRAVSSGDSRNSDVIYKLTASGGPGNKAESKFRQFNKFENGNEWVEVVIMEGLDYEQVN--NYTLTLTATDMTSRV-ASTKTFV-VEVRDVNDVVPQFTV--DLFTG-------TIDEEMTPNEHLEKTNGKPIVTVKAIDTDSDGPQNEVHYRI 1259 HSP 9 Score: 59.6918 bits (143), Expect = 1.883e-8 Identity = 84/310 (27.10%), Postives = 136/310 (43.87%), Query Frame = 3
Query: 1524 NDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLD----REKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVND-CAPRINESLNTFSVYENQPIGTVIGKLIATDCD--------IGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKT-----AVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSP-IFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLN 2396
NDN P FT Y +V+E++ ++ V+A DKD G NS+I Y + +H F I+ N G+I LD E+ Y+ V A D + +S+A +HI + ND A + S T V E+ GT + ++ A D D + +NG+ + + + L+ L VS + ++ +L + V+D G SKT + I I D N+N P+ PD A Y +D + + T T+ P I +D D NG + +S+ Y +S + F ++
Sbjct: 636 NDNVPTFTRPLYTAQVREDIPLNQTILKVTAVDKDTGDNSRITYSVDNHN----FSINSN-GEISAKVRLDADQLNERHFVYRFNVTARDHG-EPVSLSSSAMIHIRTENTNDESAVFLPTSQYTAFVAEDAQGGTPVIQIQARDADRDEVTYSFMDKNGRSTQKMNLFSIDEHTGLV---KLRHGVSAADLAEAENPINLTVIVQDDGSCCVYPSKTHTSYATLLIGIEDVNNNKPE---FPD-CAKY-------SDIAKIMEGTYKTDPPTIVKVEATDDDSSANGDIVYSL--YYTQSESRKAFVID 923
BLAST of Protocadherin gamma vs. Ensembl Celegans
Match: hmr-1 (Cadherin-related hmr-1 [Source:UniProtKB/Swiss-Prot;Acc:Q967F4]) HSP 1 Score: 149.058 bits (375), Expect = 1.029e-35 Identity = 185/617 (29.98%), Postives = 278/617 (45.06%), Query Frame = 3
Query: 474 VVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKE-------IIYGPGKSIDLPRAFDKDLSLINNQISYSL------QETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLP------ITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAI-SDQGIIYLIKHLDYETAPKYEIPVRVTDGEFSSNGRVEVVIIDVNDCAPQFTLNP-ENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECR-EGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQING--DRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQF--TLTDYVVRVKENLKPQYP----LIDVSATDKDDGV--NSQIKYFISDH---THQQYFKIDENSGKIIGIQSLDRE--KQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTN--------GSLLTKVSFDRESLSQV-KFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKI 2186
+ + V K F+ E+R DVND P F +T I E + GK I +A D D N++ Y + +ET HF + + I K D E ID + L + A +++ + P A+ P + IVI+D+NDN P F + Y + E+ H ++ +KA D DK S L++ ++ I F + +D G I++ + LD+E + +Y + + +DG ++ V + I DVND APQF VI E+ +L N+ D D S I R EG D + F I + + I L + +DRD G F V +D G N V + V D NDNSP F L Y ++EN +P + +DV A D DD N+ I+Y I + + F+ID+N+GKI ++SLDRE + + + V A D + A V I V D+ND AP ++ SV E PIG + A D D + +FT S S YF + T+ G L K D E ++Q F L I V D + ++ AV + ++D ND++P I
Sbjct: 1187 MTSRVASTKTFVVEVR------DVNDVVPQFTVDLFTGTIDEEMTPNEHLEKTNGKPIVTVKAIDTDSDGPQNEVHYRIVGEANGEETK---HFRIDELTGEIFPNEK-FDREKIDMYILTVEASDRSVSALPGANGPNKDNVKVQIVINDVNDNAPSFEEQKYIGRVKESEGEGHDVITIKAHDLDKHSNLRYHLIGAGGGRIP--FGVRTDSGTIFVKEPLDFEASDQYHLVLIASDGRHNATTNVYIHIEDVNDNAPQFEQQKYATTVIEEDVDIPKVLFNVHATDADQDEKSSRIVYRLEGQGADEV-FRIGKYSG------TIELVKALDRDPPAGVPSWNFVVQAIDDDG--NGLVGYADVQVNVRDINDNSPIFPERLFGY---IEENREPIHSDGVYFMDVQARDFDDPTTENANIEYGIVRNKLINGESVFRIDQNTGKIFAMRSLDREISSEREFIIEVRANDRGVPS--REGFANVTIKVTDMNDNAPFFEKTRYEGSVEETAPIGAAVMSFSAFDAD-EEAKDNVFTYQLSEESDYFYVTTDKDSKQSSVGVLRVKQPLDYEDVTQRDGFHLGIRVSDGRHD----AEAAVHVALVDRNDHAPHI 1772 HSP 2 Score: 139.428 bits (350), Expect = 7.822e-33 Identity = 180/660 (27.27%), Postives = 285/660 (43.18%), Query Frame = 3
Query: 516 LRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKE-LDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILE-NVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAISD-QGIIYLIKHLDYE---TAPKYEIPVRVTDGEFSSNG-----RVEVVIIDVNDCAPQFTLNPENLV--ISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITEN---NSERTKKIN-----IYLNQEIDRDQINGDRRFSV-IICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQI-KYFISDHTHQQYFKIDENSGKI-IGI----QSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPD-FIAAYNYSDNNTTDCSITVSKTESTN---------SPIFPFT------FSDLDDGPNGQVAFSMKIYPI 2363
+++ I++ DVNDN P F+ Y +KE G+ D+ DL +N + + F V D I + KE LD E D + L+LIA + R A+ + I I+D+NDN P+F Q Y ++E +V++ + + ATD D+ + I+ + F I G I L+K LD + P + V+ D + NG V+V + D+ND +P F PE L I EN + + + VY D D E N + + I N N E +I+ I+ + +DR +I+ +R F + + ND G+ +R NDN+P F T Y V+E ++ SA D D+ + Y +S+ + Y D++S + +G+ Q LD E D Q + +++ RH + A VH+ ++D ND AP I+ + V E+ P GT IG+ ATD D G +F S F + +G+L + DRE ++ ++L I D I + V + + D NDN P+ +P I N N C I + ++ SP F ++ F+ DG NG SM I P+
Sbjct: 1319 VKVQIVINDVNDNAPSFEEQKYIGRVKE---SEGEGHDVITIKAHDLDKHSNLRYHLIGAGGGRIPFGVRTDSGTIFV--KEPLDFEASDQYHLVLIASD----GRHNATTNVYIHIEDVNDNAPQFEQQKYATTVIEEDVDIPKVLFNVHATDADQDEKSSRIVYRLEGQGADEVFRIGKYSGTIELVKALDRDPPAGVPSWNFVVQAIDDD--GNGLVGYADVQVNVRDINDNSPIF---PERLFGYIEEN---REPIHSDGVYFMDVQARDFDDPTTE---NANIEYGIVRNKLINGESVFRIDQNTGKIFAMRSLDR-EISSEREFIIEVRANDRGVPSREGFANVTIKVTDM-NDNAPFFEKTRYEGSVEETAPIGAAVMSFSAFDADEEAKDNVFTYQLSEESDYFYVTTDKDSKQSSVGVLRVKQPLDYE--DVTQRDGFHLGIRVSDGRHDAEAAVHVALVDRNDHAPHIHGATE-HRVREDVPRGTSIGRYTATDRDAGDTARFRINR-QSDPKRQFTIDQDGTLRVAHTLDREDIA--VYNLIIEAYDNSNNI---GRQMVAVYLQDVNDNGPEPYTVPRPCIFRENTPVNQLGTCEIRATDRDTAEFGPPFTMEVSPSFKYSQYLNVIFNANGDGGNG----SMTITPL 1943 HSP 3 Score: 119.783 bits (299), Expect = 9.665e-27 Identity = 193/800 (24.12%), Postives = 331/800 (41.38%), Query Frame = 3
Query: 339 FVLQKESEEFFSLKPGSSMLTTSK--LIDLESLCGSSDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETST----------YFHFSVSKDGKPILIIIKELDAETIDTHRLI--LIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVP---ILENVELNHQILQLKAT------DKDKTSRLQFIIVPTINVEIA-KTFAISDQG----IIYLIKHLDYETAPKYEIPVRVTD--GEFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENT-----LTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDIT-ENNSERTKKIN-------IYLNQEIDRDQIN--------GDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKY-FISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRI-NESLNTFSVYENQPIGTVIGKLIATDCDIGQ-NGKFIFTLIPSAFSHYFELLT-NGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIH-LSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDD--GPNGQVAFSM---------KIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADI 2537
+ Q ES + F + + +LT S + D E+ ++ V A D+ I + ++ V D+NDN P F+ SY ++ G S+ AFD D + N +I+YSL+ +T +F + G+ + +IK + + T + I +IA + P +S +T+ + D P++ S P + ENVELN IL+ +A + D +L P E + F + G + +++ LDYE Y + + TD +S V + DVND PQFT++ I E L KT IV I+ P + + + I E N E TK I+ N++ DR++I+ DR S + G N V + + D NDN+P F Y+ RVKE+ + +I + A D D +S ++Y I + F + +SG I + LD E D Y + ++A+D RH +T V+IH+ DVND AP+ + T + E+ I V+ + ATD D + + + ++ L F + +G++ + DR+ + V S V+ I ++ + L V + + D NDNSP + P+ + + Y + N S D DD N + + + ++ I + ++F + ++ I +R F++ + A D+G P RE + ++ D+
Sbjct: 910 YYTQSESRKAFVIDRQTGVLTPSPHVVFDRET--------RPREDVTVKATDRGDRPLIGFCQFSVEVVDINDNSPQFERPSYETSVSR-FEAVGTSVITVFAFDNDAAH-NAEITYSLEIDTTAGEEHQNDLDFFELVNRRSGE--ITLIKPI---PMKTQKFIFNVIADDNGIPEALQSSAQVTLNVLDKQQKAPKWQTSPDCKPGITVDENVELNKVILRCRAVSSGDSRNSDVIYKLTASGGPGNKAESKFRQFNKFENGNEWVEVVIMEGLDYEQVNNYTLTLTATDMTSRVASTKTFVVEVRDVNDVVPQFTVDLFTGTIDEEMTPNEHLEKTNGKPIVTV--------KAIDTDSDGPQNEVHYRIVGEANGEETKHFRIDELTGEIFPNEKFDREKIDMYILTVEASDRSVSAL----PGANGPNKDNVKVQIVINDVNDNAPSFEEQKYIGRVKESEGEGHDVITIKAHDLDK--HSNLRYHLIGAGGGRIPFGVRTDSGTIFVKEPLDFEASDQYHLVLIASDG-----RHNATTNVYIHIEDVNDNAPQFEQQKYATTVIEEDVDIPKVLFNVHATDADQDEKSSRIVYRLEGQGADEVFRIGKYSGTIELVKALDRDPPAGVP-SWNFVVQAIDDDGNGLVGYADVQVNVRDINDNSP---IFPERL--FGYIEENR-------EPIHSDGVYFMDVQARDFDDPTTENANIEYGIVRNKLINGESVFRIDQNTGKIFAMRSLDREISSER--------EFIIEVRANDRGVPSREGFANVTIKVTDM 1654 HSP 4 Score: 94.3597 bits (233), Expect = 5.350e-19 Identity = 153/606 (25.25%), Postives = 254/606 (41.91%), Query Frame = 3
Query: 528 IIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLP-----RAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKE---LDAETIDTHRLILIAWNQNYPSRPTASL-PITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAISDQ-------------GIIYLIKHLDYETAPKYEIPVRVTDG----EFSSNGRVEVVIIDVNDCAPQFTLNPE---NLVISENT-LTKTLLGNIVVYDQDSAYVDS--GIECREGSPNDA----MRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQ--------YPLIDVSATDKD-DGVNSQIKYFI---SDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTS-----TATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKI 2186
I +EDVN+N P F + + +I +I+ G K+ D P A D D S N I YSL T + + D + ++ D ET + + A ++ RP ++ + DINDN P+F + Y + + ++ + A D D + T ++EI T Q G I LIK + +T K+ V D S+ +V + ++D AP++ +P+ + + EN L K +L V DS D + G N A +F+ EN +E + + + + +D +Q+N + DM +R +T T + V D ND PQFT+ + + E + P P++ V A D D DG +++ Y I ++ ++F+IDE +G+I + DREK D Y +TV A+D +++ + + V I + DVND AP E V E++ G + + A D D N ++ + +G++ K D E+ Q L I + ++ T V I I D NDN+P+
Sbjct: 853 IGIEDVNNNKPEFPDCAKYSDIAKIMEGTYKT-DPPTIVKVEATDDDSSA-NGDIVYSLYYTQSESRKAFVIDRQTGVLTPSPHVVFDRETRPREDVTVKATDRG--DRPLIGFCQFSVEVVDINDNSPQFERPSYETSVSRFEAVGTSVITVFAFDNDAAHNAEI----TYSLEIDTTAGEEHQNDLDFFELVNRRSGEITLIKPIPMKTQ-KFIFNVIADDNGIPEALQSSAQVTLNVLDKQQKAPKWQTSPDCKPGITVDENVELNKVILRCRAVSSGDSRNSDVIYKLTASGGPGNKAESKFRQFNKFENGNEW---VEVVIMEGLDYEQVN--NYTLTLTATDM--TSRVASTKTFVVEVRDVNDVVPQFTVDLFTGTIDEEMTPNEHLEKTNGKPIVTVKAIDTDSDGPQNEVHYRIVGEANGEETKHFRIDELTGEIFPNEKFDREKIDMYILTVEASDRSVSALPGANGPNKDNVKVQIVINDVNDNAPSFEEQKYIGRVKESEGEGHDVITIKAHDLDKHSNLRYHLIGAGGGRIPFGVRTDSGTIFVKEPLDFEASDQYHLVL------IASDGRHNATTNVYIHIEDVNDNAPQF 1436 HSP 5 Score: 77.411 bits (189), Expect = 7.138e-14 Identity = 88/339 (25.96%), Postives = 143/339 (42.18%), Query Frame = 3
Query: 1524 NDNSPQFTLTDYVVRVKENLKPQYPLIDVSATD----KDDGVNSQIKYFISDHTHQ---QYFKIDENSGKIIGIQSLDREKQ---DYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLR--ITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFS-MKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSD----GNRFLVTLIAKDKGS 2489
++ PQF +Y V V E+ Y ++DV A +D I Y + T + ++F+ID ++G I + LD + +++ V A E S + I + DVND P L T V E+ P+ I K+ A D D G N + + S +H F + +NG + KV D + L++ F R +T RD GE + LSS + I+ + ND S F+ Y + V++ +P+ D D +V +S M S + LF ++ +KL+ +D N +T+I +D GS
Sbjct: 524 DERPPQFAKQEYEVTVSEDNLVDYSVVDVKAQSFRSFEDGRSKGPITYSLEGDTPEDETKWFRIDPSTGIIHLTRLLDFDDPALPKLHKLKVTA-----REDNRESHVDLTIRIDDVNDNVPTFTRPLYTAQVREDIPLNQTILKVTAVDKDTGDNSRITY----SVDNHNFSINSNGEISAKVRLDADQLNERHFVYRFNVTARDHGEPVSLSSSAMIHIRTENTNDESAV------FLPTSQY--------TAFVAEDAQGGTPVIQIQARDAD---RDEVTYSFMDKNGRSTQKMNLFSIDEHTGLVKLRHGVSAADLAEAENPINLTVIVQDDGS 836 HSP 6 Score: 76.6406 bits (187), Expect = 1.194e-13 Identity = 122/521 (23.42%), Postives = 207/521 (39.73%), Query Frame = 3
Query: 786 HRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDK--TSRLQFIIVPTINVEIAKTFAISDQGIIYLIKHLDYETAPK----YEIPVRVTD-GE---FSSNGRVEVVIIDVNDCAPQFTLNPE-NLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQE-------------IDRDQINGDRRFSVIICNDMGI----NNRXXXXXXXXXXXXXXNDNSPQF----TLTDYVVRVKENLKPQYP-LIDVSATDKDDGVNSQIKY--FISDHTHQQYFKIDENSGKIIGIQSL--DREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTL---IPSAFSH-----YFELLTNGS----LLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPD 2201
H+L + A N S + +TI IDD+NDN P F++ +Y + E++ LN IL++ A DKD SR+ + + F+I+ G I LD + + Y V D GE SS+ + + + ND + F + ++E+ T + I D D D + + + N T+K+N++ E D + +VI+ +D + T+ T+ + + D N+N P+F +D ++ K P ++ V ATD D N I Y + + ++ F ID +G + + DRE + VTV ATD + + V+D+ND +P+ SV + +GT + + A D D N + ++L + H +FEL+ S L+ + + KF + D G L S V + +LD+ +PK PD
Sbjct: 611 HKLKVTAREDNRESH----VDLTIRIDDVNDNVPTFTRPLYTAQVREDIPLNQTILKVTAVDKDTGDNSRITYSV-------DNHNFSINSNGEISAKVRLDADQLNERHFVYRFNVTARDHGEPVSLSSSAMIHIRTENTNDESAVFLPTSQYTAFVAEDAQGGTPVIQIQARDAD---------------RDEVTYSFMDKNGRSTQKMNLFSIDEHTGLVKLRHGVSAADLAEAENPINLTVIVQDDGSCCVYPSKTHTSYATLLIGIEDVNNNKPEFPDCAKYSDIAKIMEGTYKTDPPTIVKVEATDDDSSANGDIVYSLYYTQSESRKAFVIDRQTGVLTPSPHVVFDRETRPREDVTVKATDRGDRPL--IGFCQFSVEVVDINDNSPQFERPSYETSVSRFEAVGTSVITVFAFDNDAAHNAEITYSLEIDTTAGEEHQNDLDFFELVNRRSGEITLIKPIPMKTQ-----KFIFNVIADDNGIPEALQSSAQVTLNVLDKQQKAPKWQTSPD 1098 HSP 7 Score: 76.2554 bits (186), Expect = 1.462e-13 Identity = 156/653 (23.89%), Postives = 280/653 (42.88%), Query Frame = 3
Query: 333 YHFVLQKESEEFFSLKPGSSMLTTSKLIDLESLCGSSDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPR------AFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAE---TIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQ----ILQLKATDKD----KTSRLQFIIVPTINVEIAKTFAI-SDQGIIYLIKHLDYETAPKYE--IPVRVTD-GEFSSNG--RVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQF-TLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPI---GTVIGKLIATDCDIGQNG-KFIFTLIPS-AFSHYFELL-------TNGSL-LTKV-SFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNS 2177
YH + F ++ S + + +D E+ SD Y+ + L+ D + + I +EDVNDN P F+ Y + E + +D+P+ A D D +++I Y L+ F + K I ++K LD + + + ++ A + + + + + + DINDN P F + ++ I EN E H + ++A D D + + +++ IV + F I + G I+ ++ LD E + + E I VR D G S G V + + D+ND AP F + E + + +D D D+ + +D + T+ +S+++ + + Q +D + + F + I G R A V + ++D ND++P T++ RV+E++ + +ATD+D G ++ + +Q F ID++ G + +LDRE Y + + A D + N R V +++ DVND P EN P+ GT ++ ATD D + G F + PS +S Y ++ NGS+ +T + FDRE+ K L I + + + ++ +V + I D NDN+
Sbjct: 1370 YHLIGAGGGRIPFGVRTDSGTIFVKEPLDFEA----SDQYH-------LVLIASDGRHNATTNVYIHIEDVNDNAPQFEQQKYATTVIE------EDVDIPKVLFNVHATDADQDEKSSRIVYRLEGQGADEVFRIGKYSGTIE-LVKALDRDPPAGVPSWNFVVQAIDDD-GNGLVGYADVQVNVRDINDNSPIFPERLFGY-IEENREPIHSDGVYFMDVQARDFDDPTTENANIEYGIVRNKLINGESVFRIDQNTGKIFAMRSLDREISSEREFIIEVRANDRGVPSREGFANVTIKVTDMNDNAPFFEKTRYEGSVEETAPIGAAVMSFSAFDADEEAKDNVFTYQLSEESDYF-YVTTDKDSKQSSVGVLRVKQPLDYEDVTQRDGFHLGIRVSDG---RHDAEAAVHVALVDRNDHAPHIHGATEH--RVREDVPRGTSIGRYTATDRDAGDTARFRINRQSDPKRQ-FTIDQD-GTLRVAHTLDREDIAVYNLIIEAYDNSNNIGRQ----MVAVYLQDVNDNGPEPYTVPRPCIFRENTPVNQLGTC--EIRATDRDTAEFGPPFTMEVSPSFKYSQYLNVIFNANGDGGNGSMTITPLQEFDREAPVPGKI-LEIPLI-LADRAGRRNEASVHVIIGDLNDNT 1986 HSP 8 Score: 67.3958 bits (163), Expect = 8.930e-11 Identity = 167/735 (22.72%), Postives = 300/735 (40.82%), Query Frame = 3
Query: 351 KESEEFFSLKPGSSMLTTSKLIDLESLCGSSDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGP-GKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETID----THRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRF-SQSIYRVPILENVELNHQILQLKATDKDKTS-RLQFIIVPTINVEIAKTFAISDQ-GIIYLIKHLDYETAPKYEIPVRVT-----DGE--------FSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKI--NIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXX-------------------NDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFI-----SDHTHQQ---YFK-IDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNT---FSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPS------AFSHY--FELLTNGSLLTKV----SFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSK-TESTNS-PIFPFTFSDLD-DGPNGQVAFSM 2348
++ ++F + P + ++ ++L+D + + + + R+ + + I ++DVNDN P F YT ++E I P ++I A DKD N++I+YS+ +FS++ +G+ + LDA+ ++ +R + A + P ++S I I ++ ND F S Y + E+ + ++Q++A D D+ F+ + + F+I + G++ L + + E P+ +T DG +S + + I DVN+ P+F P+ S+ + K + G Y D P ++ + T+++S I ++Y Q R DR+ V+ + + +R T NDNSPQF Y V +I V A D D N++I Y + + HQ +F+ ++ SG+I I+ + + Q + V+A D I E S+A V ++V+D AP+ S + +V EN + VI + A +N I+ L S A S + F NG+ +V D E ++ ++L +T D+ + S+KT V +++ D ND P+ +V D T D +T ++ E TN PI D D DGP +V + +
Sbjct: 579 EDETKWFRIDPSTGIIHLTRLLDFDDPA--------LPKLHKLKVTAREDNRESHVDLTIRIDDVNDNVPTFTRPLYTAQVREDI--PLNQTILKVTAVDKDTG-DNSRITYSVDN----HNFSINSNGEISAKV--RLDADQLNERHFVYRFNVTARDHGEPVSLSSSAMIHIRTENTNDESAVFLPTSQYTAFVAEDAQGGTPVIQIQARDADRDEVTYSFMDKNGRSTQKMNLFSIDEHTGLVKLRHGVSAADLAEAENPINLTVIVQDDGSCCVYPSKTHTSYATLLIGIEDVNNNKPEF---PDCAKYSD--IAKIMEG---TYKTD--------------PPTIVKVEATDDDSSANGDIVYSLYYTQSESRKAFVIDRQTGVLTPSPHVVFDRETRPREDVTVKATDRGDRPLIGFCQFSVEVVDINDNSPQFERPSYETSVSRFEAVGTSVITVFAFDNDAAHNAEITYSLEIDTTAGEEHQNDLDFFELVNRRSGEITLIKPIPMKTQKFI-FNVIADDNGIPEALQ-SSAQVTLNVLDKQQKAPKWQTSPDCKPGITVDENVELNKVILRCRAVSSGDSRNSDVIYKLTASGGPGNKAESKFRQFNKFENGNEWVEVVIMEGLDYEQVN--NYTLTLTATDMTSRV-ASTKTFV-VEVRDVNDVVPQFTV--DLFTG-------TIDEEMTPNEHLEKTNGKPIVTVKAIDTDSDGPQNEVHYRI 1259 HSP 9 Score: 59.6918 bits (143), Expect = 1.883e-8 Identity = 84/310 (27.10%), Postives = 136/310 (43.87%), Query Frame = 3
Query: 1524 NDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLD----REKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVND-CAPRINESLNTFSVYENQPIGTVIGKLIATDCD--------IGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKT-----AVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSP-IFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLN 2396
NDN P FT Y +V+E++ ++ V+A DKD G NS+I Y + +H F I+ N G+I LD E+ Y+ V A D + +S+A +HI + ND A + S T V E+ GT + ++ A D D + +NG+ + + + L+ L VS + ++ +L + V+D G SKT + I I D N+N P+ PD A Y +D + + T T+ P I +D D NG + +S+ Y +S + F ++
Sbjct: 636 NDNVPTFTRPLYTAQVREDIPLNQTILKVTAVDKDTGDNSRITYSVDNHN----FSINSN-GEISAKVRLDADQLNERHFVYRFNVTARDHG-EPVSLSSSAMIHIRTENTNDESAVFLPTSQYTAFVAEDAQGGTPVIQIQARDADRDEVTYSFMDKNGRSTQKMNLFSIDEHTGLV---KLRHGVSAADLAEAENPINLTVIVQDDGSCCVYPSKTHTSYATLLIGIEDVNNNKPE---FPD-CAKY-------SDIAKIMEGTYKTDPPTIVKVEATDDDSSANGDIVYSL--YYTQSESRKAFVID 923
BLAST of Protocadherin gamma vs. Ensembl Celegans
Match: cdh-1 (CaDHerin family [Source:UniProtKB/TrEMBL;Acc:Q5F4W0]) HSP 1 Score: 145.591 bits (366), Expect = 1.034e-34 Identity = 168/615 (27.32%), Postives = 280/615 (45.53%), Query Frame = 3
Query: 666 NNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAISD-QGIIYLIKHLDYETAPKYEIPVRVTDGEFSSN---GRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTN-GSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPK-ISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSP 2492
+ +I YSLQ H +V + I K D E +++ +IA N N S + SL I+I + D+NDN P F + Y + + E + +L + A+D D + F V + + +F+I+ G ++ K L ++ + V DG S+ + + +ID + PQF+ + + +E+ L +G++ + + SG + F I E+ + IY+ + +D D + +V++ + + + V + + D NDN PQF+ + + ++E+LK P V A+DKD N +++Y I +ID+ +G++ LD E Y++ V ATDL I +S T+ IHV+DVND AP +S T V EN P T++GK++A D D +NG+ ++ + + S YF + G++ TK S DRE +S V S I D G SS + I +LD NDN P +S+ P I V ++ I D D G NG V +Y L+S+ LF + + + L+R SD +++I D+G P
Sbjct: 572 SKRIRYSLQNQDE--HLTVDTMSGTVCIQ-KTFDFEKQKSYQTTVIATNAN--SETSTSL-ISIRLKDVNDNWPIFYPNEYHLTVREGPKPEEPLLVVSASDMDSGT---FGEVSYHILSESSSFSINPVTGEVFAQKPL---ARGRFHLVVSAKDGGGQSSENSANIHITVIDKDTKTPQFSRSKYEIRTTEDILPGIAIGSVGAMSKVKYSIYSG--------DQDHNFSIDEDTGK------IYVTRYLDADVHD-----TVLLNIQATLPSGESNQTQVVIFIEDHNDNPPQFSSSLVEISIREDLKLHEPFYVVQASDKDKKKNGEVRYSIISSHPGSSIEIDQFTGQLSTGSLLDYEATRNYKLRVKATDLGIPP--RSSNMTLFIHVLDVNDNAPEFEKSWYTMEVLENSPPKTIVGKVVARDKDSLENGQIVYRI--TNGSEYFGIDEKLGNVYTKRSIDREVISHVDIS--IVAEDKGVPPR-SSTASARISVLDVNDNPPSCLSITP-----------------IVVPAGSPLSTAIGTIVAMDPDKGLNGSV-----LYRAQLQSS-LFVVK-SNGDVYLRRQLNASDERHQRLSVIVSDQGVP 1124 HSP 2 Score: 97.4413 bits (241), Expect = 5.763e-20 Identity = 168/723 (23.24%), Postives = 299/723 (41.36%), Query Frame = 3
Query: 429 LCGSSDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTH--RLILIAWNQNYPSRPTASLPITIVID--DINDNEPRFSQSIYRVPILENVELNHQILQLKATDKD--KTSRLQFIIVPTINVEIAKTFAISDQGIIYLIKHLDYETAPKYEIPVRVTDGEF-SSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFEL------LTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKA--IKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADI---PP 2543
LCG D + E + L+ +D Q I E + + D+NDN P + ++ ++ G +++ A D DL N I YS+ +T S+ K+ I + TID + I P S + +V D D P+F +++++V I E+ + ++++ A + + R+++ + T + G + + K D+E Y+ V T+ +S + + + DVND P F N +L + E + L + D DS E +++ F I E ++ + + R RF +++ G + + +TV+D + +PQF+ + Y +R E++ P + V G S++KY I F IDE++GKI + LD + D + + AT L E T V I + D ND P+ + SL S+ E+ + + A+D D +NG+ +++I S E+ L+ GSLL D E+ K LR+ D+G SS + I +LD NDN+P +F ++ ++ V + + + D D NGQ+ + + +N Y + EK + KRS + + ++++A+DKG PPR ++ + D+ PP
Sbjct: 397 LCGILDRETAS-EHHLKFLLEKDGQIIIEHPQLLTIGDINDNAPQWHSSQIHISLNRT-QGGSRTL---TAKDPDLGQ-NGWIRYSVLDTEL---VSIDKETGRIFV------PNTIDCNIGSEIKFRVRAEDGGSPALSTDLQVVADLLDTESKPPQFEKALWQVEIPEDTPIGTCLVKVVANNSQCGNSKRIRYSLQNQDEHLTVDTMS----GTVCIQKTFDFEKQKSYQTTVIATNANSETSTSLISIRLKDVNDNWPIFYPNEYHLTVREGPKPEEPLLVVSASDMDSGTFG---EVSYHILSESSSFSINPVTGE------VFAQKPLARG------RFHLVVSAKDGGGQSSENSANIHITVIDKDTKTPQFSRSKYEIRTTEDILPGIAIGSV-------GAMSKVKYSIYSGDQDHNFSIDEDTGKIYVTRYLDADVHDTVLLNIQAT-LPSGESNQTQ---VVIFIEDHNDNPPQFSSSLVEISIREDLKLHEPFYVVQASDKDKKKNGEVRYSIISSHPGSSIEIDQFTGQLSTGSLL-----DYEATRNYK--LRVKATDLGIPPR-SSNMTLFIHVLDVNDNAP------EFEKSW---------YTMEVLENSPPKTIVGKVVARDKDSLENGQIVYRI--------TNGSEYFGIDEKLGNVYTKRSIDREVISHVDISIVAEDKGVPPRSSTASARISVLDVNDNPP 1043 HSP 3 Score: 87.0409 bits (214), Expect = 7.393e-17 Identity = 108/463 (23.33%), Postives = 199/463 (42.98%), Query Frame = 3
Query: 630 LPRA-FDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWN--QNYPSRPTASLPITIVIDDINDNEPRFSQSI-YRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAISDQ--GIIYLIKHLDYETAPKYEIPVRVTDGEFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTL-LGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSE--RTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVI--DVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLI 1985
LPR F L ++YS+ E + FSV +G ++ ELD E ++ + L +I Q +R + + ++++NDN P F S RVP EN+ + + + A D D + L++ +V + + F I DQ G I+L LD+E P++ + ++ TDG F + + + + D+ND AP F+ +S T + I +D D+ A+ + + + +S R + L ++ G+R + D G+ + T+ + + P F ++ V EN K + ++S + + + Y I D + F ID+ G++ +DRE++ ++ V NE+ + HVI D ND P S+ ++ G IG+++A+D D G+NG+ + ++
Sbjct: 1845 LPRGQFIAKLQPELAGLTYSIVEGNIDSAFSVDSEG--VIRTNLELDREILERYSLKVIGTGSGQQIGTR------VDVRVNNLNDNVPSFPMSKPRRVP--ENLRVGSYVATVGAKDVDNLAPLRYFLVSDSSGQTPTHFNI-DQFTGTIHLTAPLDFEVLPEHTLTIKATDGSFDTFTNLTIFVSDINDNAPTFSKPLYQTTVSPATFSPGQPFAKIEAHDLDA--------------RGALTYSLGQGSSSIFRVAPESGALFMKVLPPA--GERYLVTVTATDNGVPSFSTSVPVSVIIGEAEPTDKPGFEKAEFRFEVMENSKIGLQIGNLSGEE-----SREFHYRIQDPEASKIFSIDK-FGRLFVAGPIDREQRATHEFQVEID----NEMMTSQKVQCKCHVIVLDENDNLPVFTSVAYYLSLKDSMAHGQKIGQIMASDQDSGENGRVSYRIL 2270 HSP 4 Score: 86.6557 bits (213), Expect = 1.019e-16 Identity = 162/762 (21.26%), Postives = 310/762 (40.68%), Query Frame = 3
Query: 324 SPGYHFVLQKE-SEEFFSLKPGSSMLTTSKLIDLESLCGSSDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQ-ETSTYFHFSVSKDGKPI---LIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKD--KTSRLQFIIVPTINVEIAKTFAISDQGIIYLIKHLDYETAPKYEIPVRVTDGEFSSNGRVEVVIIDVNDCAPQFTLNP-ENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXX-----------------NDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFAD 2534
+P Y V E + +F + S ++T +D Y +F +VA+ + + + + I + V+D NDN P F + I E G S LP D D + LQ + F + K + + L++ +LD E D + L++ A + P++ L +I I D NDN P FS+S Y + N+ + ++ ++ATD D + SR+ + I T + FAIS G+I L +P D V+++ + +P + + + + +TL+ L I + + +SA++ E S ++ ++ R K+ + + + Q + + +++C GI +R TA+ +L+ NDN+PQ+ + + + + Q ++A D D G N I+Y + D + ID+ +G+I ++D + V A D + ++ V ++D P+ ++L + E+ PIGT + K++A + G + + ++L + H +G++ + +FD E Q + + + E +S + + I++ D NDN P + Y+ +TV + P+ + SD+D G G+V++ + L + F +N + ++ + RF + + AKD G E S I + D
Sbjct: 53 APKYFVVFPDEQTSKFLKVDERSGEISTIAHLD----------YEKRSKFDIVAVKVEESG--ETIDILVEVDDENDNAPSFADQVVKLEISEFAQ-LGTSFALPTVTDGDGPKFDVHRFVILQGNVNNVFKLASRKVNEQLQADLVVNGQLDREFRDKYELLIEAQDGGKPAK-IGQLRCSIEIIDANDNAPVFSRSRYTASVSANISIGSHLITVQATDADIGENSRISYDIKKT-SAPSNSNFAISQSGVITTTASL---------LPASTHD----------VIVVASDHGSPSLSSSAVVTITVLGSTLSSPPLDIIWLVESNSAHL------MENSTLGSIVARVSIAQQYRDTKLRLIGSSALCPQQTDQAHVYLLLLC---GILDRETASEHHLKFLLEKDGQIIIEHPQLLTIGDINDNAPQWHSSQIHISLN---RTQGGSRTLTAKDPDLGQNGWIRYSVLD---TELVSIDKETGRIFVPNTIDCNIGSEIKFRVRAEDGGSPAL--STDLQVVADLLDTESKPPQFEKALWQVEIPEDTPIGTCLVKVVANNSQCGNSKRIRYSL-QNQDEHLTVDTMSGTVCIQKTFDFE--KQKSYQTTVIATNANSE---TSTSLISIRLKDVNDNWPIF-----YPNEYH----------LTVREGPKPEEPLLVVSASDMDSGTFGEVSYHI------LSESSSFSINPVTGEVFAQKPLAR---GRFHLVVSAKDGGGQSSENSANIHITVID 733 HSP 5 Score: 85.8853 bits (211), Expect = 1.902e-16 Identity = 111/496 (22.38%), Postives = 221/496 (44.56%), Query Frame = 3
Query: 522 INIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDIN-DNEPRFSQSIYRVPILENVELNHQILQLKATD-KDKTSRLQFIIVPTINVEIAKTFAISDQGIIYLIKHLDYETAPKYEIPVRVTDGEFSSNGRVE----VVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVII-CNDMGINNRXXXXXXXXXXXXXX-NDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTAT-VHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTL 1982
+ I V D+NDN P F Y + + PG+ A D D ++YSL + S+ F V+ + + + + E + + + A + PS T S+P++++I + ++P F ++ +R ++EN ++ QI L + ++ R+Q + E +K F+I G +++ +D E +E V + D E ++ +V+ V+++D ND P FT L + ++ +G I+ DQDS + + R S ND +T N + ++N + + ++D + + +++ D G R + + + ++P F L Y V V E+ L + A+++ N + Y + + HQ ID +G++ LD E + +++ L++++ S + I V V++ AP +S T + + P G +G++ A D D G +G +++
Sbjct: 2015 LTIFVSDINDNAPTFSKPLYQTTVSPATFSPGQPFAKIEAHDLD---ARGALTYSLGQGSSSI-FRVAPESGALFMKVLPPAGE---RYLVTVTATDNGVPSFST-SVPVSVIIGEAEPTDKPGFEKAEFRFEVMENSKIGLQIGNLSGEESREFHYRIQ-------DPEASKIFSIDKFGRLFVAGPIDREQRATHEFQVEI-DNEMMTSQKVQCKCHVIVLDENDNLPVFTSVAYYLSLKDSMAHGQKIGQIMASDQDSGE-NGRVSYRILSGNDLNI--VTLNPDTGSIQLNEWNDAQLDEFP---NATWQILVEARDHGHPARAAVGKVQVSLKMSSWSGSAPFFVLPVYEVHVLEDTSVGTVLQKIRASNRLGMRNDGLLYSLKE--HQGKLGIDVKTGELTLKTHLDWESE-----PIISMYLSVSDGNGRSAVVPLKIVVEPVDEFAPVFTKSSYTLQIPISTPAGESVGQMQAIDEDGGVHGVVKYSI 2481 HSP 6 Score: 77.7962 bits (190), Expect = 5.461e-14 Identity = 147/583 (25.21%), Postives = 245/583 (42.02%), Query Frame = 3
Query: 885 PRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAISDQ-GIIYLIKHLDYETAPKYEIPVRVTDGEFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKI-NIYLNQEIDRDQ-ING--DRRF----SVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFI--SDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRIN-----ESLNTFSVYENQPIGTVIGKL-IAT---DCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQ--VKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSM---KIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADI---PPRL 2549
P F Q + + + E+ ++ +I + ++ + F++ P + + +K + ++ G I I HLDYE K++I V V E + V + D ND AP F L ISE T V D D G D RF I + N K+ + +N+++ D +NG DR F ++I G ++ ++DANDN+P F+ + Y V N+ LI V ATD D G NS+I Y I + F I + SG I SL + V VVA+D + +S+A V I V+ +P ++ ES N+ + EN +G+++ ++ IA D + G + +H + LL G L DRE+ S+ +KF L + I E L + I D NDN+P+ +++ I++++T+ + + T D D G NG + +S+ ++ I ++ ++F N + I G+ + A+D GSP T ++ D PP+
Sbjct: 20 PTFCQCLTKFTVPESAQIGTRIGWISGKREESAAPKYFVVFP--DEQTSKFLKVDERSGEISTIAHLDYEKRSKFDI-VAVKVEESGETIDILVEVDDENDNAPSFADQVVKLEISEFAQLGTSFALPTVTDGD------------GPKFDVHRFVILQGNVNNVFKLASRKVNEQLQADLVVNGQLDREFRDKYELLIEAQDGGKPAKIGQLRCSIEIIDANDNAPVFSRSRYTASVSANISIGSHLITVQATDADIGENSRISYDIKKTSAPSNSNFAISQ-SGVITTTASL--LPASTHDVIVVASDHGSPSL--SSSAVVTITVLGSTLSSPPLDIIWLVES-NSAHLMENSTLGSIVARVSIAQQYRDTKLRLIGSSALCPQQTDQAHVYLLLLCGIL------DRETASEHHLKFLLEKDGQIIIEHPQL-------LTIGDINDNAPQW---------------HSSQIHISLNRTQGGSRTL---TAKDPDLGQNGWIRYSVLDTELVSIDKETGRIFVPNTIDCNI----------GSEIKFRVRAEDGGSPALSTDLQVVADLLDTESKPPQF 540 HSP 7 Score: 63.929 bits (154), Expect = 8.795e-10 Identity = 117/542 (21.59%), Postives = 216/542 (39.85%), Query Frame = 3
Query: 519 RINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPIL-ENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAISDQGIIYLIKHLDYETAPKYEIPVRVTDG---EFSSNGRVEVVIIDVNDC-APQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKIN----IYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKI----IGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFEL---LTNGSLLTKVSFDRESLSQVKFSLRIT 2096
R+++ V ++NDN P F + + + + G + + D L +S S +T T HF++ + I + LD E + H L + A + ++ + +TI + DINDN P FS+ +Y+ + +++A D D L + ++ + F ++ + +K L +Y + V TD FS++ V V+I + P F + EN+ +GN+ SG E RE + I + + + I+ +++ IDR+Q F V I N+M + + V + NDN P FT Y + +K+++ + + A+D+D G N ++ Y I ++ ++G I LD +Q+ V A D V + + + AP + V E+ +GTV+ K+ A++ +N +++L H +L + G L K D ES + L ++
Sbjct: 1912 RVDVRVNNLNDNVPSFPMSKPRRVPENLRVGSYVATVGAKDVDNLAPLRYFLVSDSSGQTPT--HFNIDQFTGTIHLT-APLDFEVLPEHTLTIKATDGSFDTFTN----LTIFVSDINDNAPTFSKPLYQTTVSPATFSPGQPFAKIEAHDLDARGALTY----SLGQGSSSIFRVAPESGALFMKVLP-PAGERYLVTVTATDNGVPSFSTSVPVSVIIGEAEPTDKPGFEKAEFRFEVMENSKIGLQIGNL-----------SGEESRE------FHYRIQDPEASKIFSIDKFGRLFVAGPIDREQ-RATHEFQVEIDNEMMTSQKVQCKCHVIVLDE--NDNLPVFTSVAYYLSLKDSMAHGQKIGQIMASDQDSGENGRVSYRILSGNDLNIVTLNPDTGSIQLNEWNDAQLDEFPNATWQILVEARDHGHPARAAVGKVQVSLKMSSWSGSAPFFVLPVYEVHVLEDTSVGTVLQKIRASNRLGMRNDGLLYSLK----EHQGKLGIDVKTGELTLKTHLDWESEPIISMYLSVS 2417 HSP 8 Score: 58.151 bits (139), Expect = 5.605e-8 Identity = 115/515 (22.33%), Postives = 193/515 (37.48%), Query Frame = 3
Query: 1026 IAKTFAISDQGIIYLIKHLDYETAPKYEIPVRVTDGEFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGI---NNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVK-ENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVC---IKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQL--FYLNVTEKAIKLKRSWQQSDGNRF-----LVTLIAKDKGSPPRETSKVIMVQF 2528
I F++ +G+I LD E +Y + V T RV+V + ++ND P F ++ V EN + + + D D+ + S F+I + I+L +D F V+ + + I + F +T+ V D NDN+P F+ Y V P P + A D D + Y + + F++ SG + + + Y VTV ATD + + +V I + D P ++ F V EN IG IG L ++ +F + + S F + G L DRE + +F + I + ++S+ C + +LDENDN +P F + Y +++ + + I SD D G NG+V++ + L N L LN +I+L W + + F + + A+D G P R + V
Sbjct: 1870 IDSAFSVDSEGVIRTNLELDREILERYSLKVIGTGSGQQIGTRVDVRVNNLNDNVPSFPMSKPRRV-PENLRVGSYVATVGAKDVDNLAPLRYFLVSDSSGQTPTHFNIDQFTG------TIHLTAPLD---------FEVLPEHTLTIKATDGSFDTFTNLTIFVSDINDNAPTFSKPLYQTTVSPATFSPGQPFAKIEAHDLD--ARGALTYSLGQGS-SSIFRVAPESGALF--MKVLPPAGERYLVTVTATDNGVPSFSTSVPVSVIIGEAEPTD-KPGFEKAEFRFEVMENSKIGLQIGNLSGE-----ESREFHYRIQDPEASKIFSIDKFGRLFVAGPIDREQRATHEFQVEI------DNEMMTSQKVQCKCHVIVLDENDN------LPVFTSVAYY---------LSLKDSMAHGQKIGQIMASDQDSGENGRVSYRI------LSGNDLNIVTLNPDTGSIQLNE-WNDAQLDEFPNATWQILVEARDHGHPARAAVGKVQVSL 2329 HSP 9 Score: 55.0694 bits (131), Expect = 4.685e-7 Identity = 92/413 (22.28%), Postives = 176/413 (42.62%), Query Frame = 3
Query: 666 NNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKD--KTSRLQFIIVPTINVEIAKTFAISDQGIIYLIK----HLDYETAPKYEIPVRVTDGEFSSNGRVEVVIIDV-----NDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQS--LDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRI 1865
+ + Y +Q+ FS+ K G+ L + +D E TH + N+ S+ IV+D+ NDN P F+ Y + + +++ +I Q+ A+D+D + R+ + I+ ++ I D G I L + LD ++I V D + V V + + + AP F L + + E+T T+L I + R G ND + + + E+ + I++ + + ++ + + + + N +A + + V ++ +P FT + Y +++ + + + A D+D GV+ +KY ISD Q KI+E++G II +Q + R Q+TVVA + + +T + I DV P++
Sbjct: 2158 SREFHYRIQDPEASKIFSIDKFGR--LFVAGPIDREQRATHEFQVEIDNEMMTSQKVQCKCHVIVLDE-NDNLPVFTSVAYYLSLKDSMAHGQKIGQIMASDQDSGENGRVSYRILSGNDLNIVTLNP--DTGSIQLNEWNDAQLDEFPNATWQILVEARDHGHPARAAVGKVQVSLKMSSWSGSAPFFVLPVYEVHVLEDTSVGTVLQKIRASN------------RLGMRNDGLLYSLKEHQGKL--GIDVKTGELTLKTHLDWESEPIISMYLSVSDGNGRSAVVPLKIVVEPVDEFAPVFTKSSYTLQIPISTPAGESVGQMQAIDEDGGVHGVVKYSISD--RQSTVKIEEHTG-IIRLQKPLVSRRNLTIEQITVVAYSSPTKQSK--TTVYLEIGPFDVQPSLPKL 2546 HSP 10 Score: 54.299 bits (129), Expect = 8.308e-7 Identity = 40/137 (29.20%), Postives = 65/137 (47.45%), Query Frame = 3
Query: 1686 FKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESL-NTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRI 2093
F I+ +G I + LDRE + + ++ TD + TV + V D ND P+++ S + + E+ +G V+ + A+D DIGQNGKF F L+ + + G L+ + SL K LR+
Sbjct: 1673 FSINSTTGSI-SVLPLDREASQEHLLIIILTDGG----SRNDSCTVRVTVADQNDNKPQLDASTPSELEIAESSRVGDVLHRFRASDMDIGQNGKFSFELLEDSSGSLDLVPETGDLVLR---RLSSLQSWKIKLRV 1801
BLAST of Protocadherin gamma vs. Ensembl Fly
Match: stan (gene:FBgn0024836 transcript:FBtr0304899) HSP 1 Score: 182.956 bits (463), Expect = 6.163e-46 Identity = 212/818 (25.92%), Postives = 361/818 (44.13%), Query Frame = 3
Query: 249 IKENQPPGLVVGNLLDNLPYKQYFISPGYHFV--LQKESEEFFSLKPGSSMLTTSKLIDLESLCGSSDCYNGTKEFQVVAL--VMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILII---------IKELDAETIDTHRLILIAWN--QNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENV---ELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAI-SDQGIIYLIKHLDYETAPKYEIPVRVTDG---EFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSE-------RTKKINIYLNQEIDRDQINGDRRFSV-IICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGK--IIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTL---------IPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADI---PPRLIDQNISM 2570
+ E QP G V + P + Y V L S+ F + + ++TTS +D E + F+VVA + L++N++ D ND+ P F+ + +I+E G ++ RA D+D+ N +I Y ++ + + ++ PI I LD ET D++ L++ A + R TA+ + + + D NDN P+FS+ Y V + E+ ++ + ++ATD D+ + I I F+I S G + L+K LDYE+ Y + +R DG S+ ++ V +ID ND AP+F + + EN + + YD D EG+ N + + I+E + RT + + +DR++ RF+ ++ D G+ + ++ V NDN P F Y V E+ P P+ V+ATD D+ +S++ Y I+ + F I +G+ I QSLD +++ + +TV ATD + TATVHI++ D N+ AP + + SV+E+ P+GT + + ATD D+G N + ++L P FS + G+++T DRE+ S + L +T +D G LS T V I + D NDN+P P + A ++ + + + SD D G NG++ + + I S F ++ T I+ + + F +T IA DKGSPP ++ + ++ D+ PP I++
Sbjct: 368 VLEEQPAGAAVTTVRARDPEDSPVV---YSMVSLLDSRSQSLFKVDSRTGVVTTSASLDRELM--------DVHYFRVVATDDSFPPRSGTTTLQVNVL--DCNDHSPTFEAEQFEASIREGAT-VGSTVITLRATDQDIGK-NAEIEYGIEAVTDGAGLAQDQE-MPIFRIDSRSGVISTRSSLDRETSDSYHLLVTAADLASAQSERRTATASVQVKVLDDNDNYPQFSERTYTVQVPEDQWGGTEDNTVAHIRATDADQGNNAA-IRYAIIGGNTQSQFSIDSMSGDVSLVKPLDYESVRSYRLVIRAQDGGSPSRSNTTQLLVNVIDANDNAPRFYTSQFQESVLENVPVGYNIIRVQAYDSD-----------EGA-NAEITYSISERDDNFPLAVDPRTGWVQTI--KPLDREEQG---RFAFQVVAKDGGVPPKSASSSVVITVQDV-NDNDPAFNPKYYEANVGEDQPPGTPVTTVTATDPDE--DSRLHYEITTGNTRGRFAITSQNGRGLITIAQSLDYKQEKRFLLTVAATDSG----GRSDTATVHINITDANNFAPIFENAPYSASVFEDAPVGTTVLVVSATDSDVGVNAQITYSLNEESINGLGSPDPFSINPQ---TGAIVTNAPLDRETTS--GYLLTVTAKDGGNP-SLSDTTDVEIGVTDVNDNAPAFKS-PLYQA--------------SILEDALVGTSVIQVAASDPDVGLNGRIKYLLSDRDIEDGS---FVIDPTSGTIRTNKGLDRESVAVFHLTAIAVDKGSPPLSSTVEVQIRLEDVNDSPPTFASDKITL 1120 HSP 2 Score: 164.081 bits (414), Expect = 2.993e-40 Identity = 176/592 (29.73%), Postives = 273/592 (46.11%), Query Frame = 3
Query: 513 ELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGP-GKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAISDQ---GIIYLIKHLDYETAPKYEIPVRVTD-GEFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENN-----SERTKKIN-----IYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDH-THQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLT-----NGSLLTKVSFDRESLSQVKFSL--RITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYN 2219
+L +N+I D NDN P F + + +++ E + P G +I +A+D D N +I+YS+ E F +V + I K LD E ++A + P + +AS + I + D+NDN+P F+ Y + E+ + + ATD D+ SRL + I T N FAI+ Q G+I + + LDY+ ++ + V TD G S V + I D N+ AP F P + + E+ T + +VV DS D G+ N + + + E + S IN I N +DR+ +G + + + G N + T V + V D NDN+P F Y + E+ +I V+A+D D G+N +IKY +SD F ID SG I + LDRE + +T +A D + +ST V I + DVND P T V EN P+G+V+G++ A D D G N +++I S+ F L+T LLT D ES ++ +F L R + + H+ I + D NDN+P V+ DF +N
Sbjct: 674 QLLVNVI--DANDNAPRFYTSQFQESVLENV--PVGYNIIRVQAYDSDEG-ANAEITYSISERDDNFPLAVDPRTGWVQTI-KPLDREEQGRFAFQVVAKDGGVPPK-SASSSVVITVQDVNDNDPAFNPKYYEANVGEDQPPGTPVTTVTATDPDEDSRLHYEIT-TGNTR--GRFAITSQNGRGLITIAQSLDYKQEKRFLLTVAATDSGGRSDTATVHINITDANNFAPIFENAPYSASVFEDAPVGTTV--LVVSATDS---DVGV-------NAQITYSLNEESINGLGSPDPFSINPQTGAIVTNAPLDRETTSG---YLLTVTAKDGGNPSLSDTTDVEIGVTDVNDNAPAFKSPLYQASILEDALVGTSVIQVAASDPDVGLNGRIKYLLSDRDIEDGSFVIDPTSGTIRTNKGLDRESVAVFHLTAIAVDKGSPPL--SSTVEVQIRLEDVNDSPPTFASDKITLYVPENSPVGSVVGEIHAHDPDEGVNAVVHYSIIGGDDSNAFSLVTRPGSERAQLLTMTELDYES-TRKRFELVVRAASPPLRNDAHIE------ILVTDVNDNAP---VLRDFQVIFN 1228 HSP 3 Score: 150.599 bits (379), Expect = 4.891e-36 Identity = 172/695 (24.75%), Postives = 307/695 (44.17%), Query Frame = 3
Query: 531 IVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFD-KDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKD--KTSRLQFII-VPTINVEIAK-----TFAI-SDQGIIYLIKHLDYETAPKYEIPVRVTDGEFSSNGR------VEVVIIDVNDCAPQFTLNPENLVISENTLTKT---LLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKIN-----IYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLT-NGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPI-SLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADI 2537
+ ++ + P+F+ A Y ++ E G ++ RA D +D ++ + +S + + F S+ G ++ LD E +D H ++A + ++P R + + + + + D ND+ P F + I E + ++ L+ATD+D K + +++ I T +A+ F I S G+I LD ET+ Y + V D + + R V+V ++D ND PQF+ + + E+ T + +I D D N A+R+ I N++ I+ + L + +D + + R + ++I G + + T + + V+DANDN+P+F + + V EN+ Y +I V A D D+G N++I Y IS+ +D +G + I+ LDRE+Q + VVA D + +++++V I V DVND P N +V E+QP GT + + ATD D ++ + + + F + + NG L ++ + + +F L + D G S V I I D N+ +P P +A + D + VS T+S D G N Q+ +S+ I L S F +N AI + + +L+T+ AKD G+P + + + D+
Sbjct: 348 VRRELRNQSPYFEQALYVASVLEE-QPAGAAVTTVRARDPEDSPVVYSMVSLLDSRSQSLFKVD-SRTG--VVTTSASLDRELMDVHYFRVVATDDSFPPR-SGTTTLQVNVLDCNDHSPTFEAEQFEASIREGATVGSTVITLRATDQDIGKNAEIEYGIEAVTDGAGLAQDQEMPIFRIDSRSGVISTRSSLDRETSDSYHLLVTAADLASAQSERRTATASVQVKVLDDNDNYPQFSERTYTVQVPEDQWGGTEDNTVAHIRATDADQGN------------NAAIRYAIIGGNTQSQFSIDSMSGDVSLVKPLDYESV---RSYRLVIRAQDGGSPSRSNTTQLLVNVIDANDNAPRFYTSQFQESVLENVPVGYNIIRVQAYDSDEGANAEITYSISERDDNFPLAVDPRTGWVQTIKPLDREEQGRFAFQVVAKDGGVPP--KSASSSVVITVQDVNDNDPAFNPKYYEANVGEDQPPGTPVTTVTATDPD--EDSRLHYEITTGNTRGRFAITSQNGRGLITIAQSLDYKQEKRFLLTVAATDSGGR---SDTATVHINITDANNFAPIFENAP--YSASVFEDAPVGTTVLVVSATDS-------------DVGVNAQITYSLNEESINGLGSPDPFSINPQTGAIVTNAPLDRETTSGYLLTVTAKDGGNPSLSDTTDVEIGVTDV 1000 HSP 4 Score: 96.2857 bits (238), Expect = 1.624e-19 Identity = 152/651 (23.35%), Postives = 273/651 (41.94%), Query Frame = 3
Query: 369 FSLKPGSSMLTTSKLIDLESLCGSSDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSV-SKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEI------AKTFAISDQ-GIIYLIKHLDYETAPKYEIPVRVTDG---EFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKI------NIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSG----KIIGIQSLDREK-QDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFEL-LTNGSLLTKVSFD-------------RESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAA 2213
++ P + + T K +D E G FQVVA + I V+DVNDNDP F Y N+ E PG + A D D ++++ Y + +T F++ S++G+ ++ I + LD + + L+ +A + TA++ I I D N+ P F + Y + E+ + +L + ATD D Q I ++N E F+I+ Q G I LD ET Y + V DG S VE+ + DVND AP F I E+ L T + + D D N +++ +++ + E + I N+ +DR+ + ++ + D G + ++T V + + D ND+ P F + V EN + ++ A D D+GVN+ + Y I F + G +++ + LD E + +++ V A + H + I V DVND AP + + F+ + + IG++ A D D+ + K + ++ ++ L ++G L+ + + +++ K ++++VR I E++ +S T ++ +E SP ++ D +AA
Sbjct: 737 LAVDPRTGWVQTIKPLDREE--------QGRFAFQVVAKDGGVPPKSASSSVVITVQDVNDNDPAFNPKYYEANVGED-QPPGTPVTTVTATDPDE---DSRLHYEITTGNTRGRFAITSQNGRGLITIAQSLDYKQ-EKRFLLTVAATDSGGRSDTATVHINIT--DANNFAPIFENAPYSASVFEDAPVGTTVLVVSATDSDVGVNAQ--ITYSLNEESINGLGSPDPFSINPQTGAIVTNAPLDRETTSGYLLTVTAKDGGNPSLSDTTDVEIGVTDVNDNAPAFKSPLYQASILEDALVGTSVIQVAASDPDVGL------------NGRIKYLLSDRDIEDGSFVIDPTSGTIRTNKGLDRESVAVFHLTAIAV--DKG-SPPLSSTVEVQIRLEDVNDSPPTFASDKITLYVPENSPVGSVVGEIHAHDPDEGVNAVVHYSIIGGDDSNAFSLVTRPGSERAQLLTMTELDYESTRKRFELVVRAASPPLRNDAH-----IEILVTDVNDNAPVLRDFQVIFNNFRDHFPSGEIGRIPAFDADV--SDKLHYRILSGNNANLLRLNSSSGGLVLSPQLNTNVPKFATMEVSVSDGINEAKAIMQLSVRLITEDMLFNSVTVRLNEMTEEAFLSPLLNFFLDGLAA 1348
BLAST of Protocadherin gamma vs. Ensembl Fly
Match: stan (gene:FBgn0024836 transcript:FBtr0300578) HSP 1 Score: 182.956 bits (463), Expect = 6.163e-46 Identity = 212/818 (25.92%), Postives = 361/818 (44.13%), Query Frame = 3
Query: 249 IKENQPPGLVVGNLLDNLPYKQYFISPGYHFV--LQKESEEFFSLKPGSSMLTTSKLIDLESLCGSSDCYNGTKEFQVVAL--VMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILII---------IKELDAETIDTHRLILIAWN--QNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENV---ELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAI-SDQGIIYLIKHLDYETAPKYEIPVRVTDG---EFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSE-------RTKKINIYLNQEIDRDQINGDRRFSV-IICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGK--IIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTL---------IPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADI---PPRLIDQNISM 2570
+ E QP G V + P + Y V L S+ F + + ++TTS +D E + F+VVA + L++N++ D ND+ P F+ + +I+E G ++ RA D+D+ N +I Y ++ + + ++ PI I LD ET D++ L++ A + R TA+ + + + D NDN P+FS+ Y V + E+ ++ + ++ATD D+ + I I F+I S G + L+K LDYE+ Y + +R DG S+ ++ V +ID ND AP+F + + EN + + YD D EG+ N + + I+E + RT + + +DR++ RF+ ++ D G+ + ++ V NDN P F Y V E+ P P+ V+ATD D+ +S++ Y I+ + F I +G+ I QSLD +++ + +TV ATD + TATVHI++ D N+ AP + + SV+E+ P+GT + + ATD D+G N + ++L P FS + G+++T DRE+ S + L +T +D G LS T V I + D NDN+P P + A ++ + + + SD D G NG++ + + I S F ++ T I+ + + F +T IA DKGSPP ++ + ++ D+ PP I++
Sbjct: 368 VLEEQPAGAAVTTVRARDPEDSPVV---YSMVSLLDSRSQSLFKVDSRTGVVTTSASLDRELM--------DVHYFRVVATDDSFPPRSGTTTLQVNVL--DCNDHSPTFEAEQFEASIREGAT-VGSTVITLRATDQDIGK-NAEIEYGIEAVTDGAGLAQDQE-MPIFRIDSRSGVISTRSSLDRETSDSYHLLVTAADLASAQSERRTATASVQVKVLDDNDNYPQFSERTYTVQVPEDQWGGTEDNTVAHIRATDADQGNNAA-IRYAIIGGNTQSQFSIDSMSGDVSLVKPLDYESVRSYRLVIRAQDGGSPSRSNTTQLLVNVIDANDNAPRFYTSQFQESVLENVPVGYNIIRVQAYDSD-----------EGA-NAEITYSISERDDNFPLAVDPRTGWVQTI--KPLDREEQG---RFAFQVVAKDGGVPPKSASSSVVITVQDV-NDNDPAFNPKYYEANVGEDQPPGTPVTTVTATDPDE--DSRLHYEITTGNTRGRFAITSQNGRGLITIAQSLDYKQEKRFLLTVAATDSG----GRSDTATVHINITDANNFAPIFENAPYSASVFEDAPVGTTVLVVSATDSDVGVNAQITYSLNEESINGLGSPDPFSINPQ---TGAIVTNAPLDRETTS--GYLLTVTAKDGGNP-SLSDTTDVEIGVTDVNDNAPAFKS-PLYQA--------------SILEDALVGTSVIQVAASDPDVGLNGRIKYLLSDRDIEDGS---FVIDPTSGTIRTNKGLDRESVAVFHLTAIAVDKGSPPLSSTVEVQIRLEDVNDSPPTFASDKITL 1120 HSP 2 Score: 164.081 bits (414), Expect = 2.993e-40 Identity = 176/592 (29.73%), Postives = 273/592 (46.11%), Query Frame = 3
Query: 513 ELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGP-GKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAISDQ---GIIYLIKHLDYETAPKYEIPVRVTD-GEFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENN-----SERTKKIN-----IYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDH-THQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLT-----NGSLLTKVSFDRESLSQVKFSL--RITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYN 2219
+L +N+I D NDN P F + + +++ E + P G +I +A+D D N +I+YS+ E F +V + I K LD E ++A + P + +AS + I + D+NDN+P F+ Y + E+ + + ATD D+ SRL + I T N FAI+ Q G+I + + LDY+ ++ + V TD G S V + I D N+ AP F P + + E+ T + +VV DS D G+ N + + + E + S IN I N +DR+ +G + + + G N + T V + V D NDN+P F Y + E+ +I V+A+D D G+N +IKY +SD F ID SG I + LDRE + +T +A D + +ST V I + DVND P T V EN P+G+V+G++ A D D G N +++I S+ F L+T LLT D ES ++ +F L R + + H+ I + D NDN+P V+ DF +N
Sbjct: 674 QLLVNVI--DANDNAPRFYTSQFQESVLENV--PVGYNIIRVQAYDSDEG-ANAEITYSISERDDNFPLAVDPRTGWVQTI-KPLDREEQGRFAFQVVAKDGGVPPK-SASSSVVITVQDVNDNDPAFNPKYYEANVGEDQPPGTPVTTVTATDPDEDSRLHYEIT-TGNTR--GRFAITSQNGRGLITIAQSLDYKQEKRFLLTVAATDSGGRSDTATVHINITDANNFAPIFENAPYSASVFEDAPVGTTV--LVVSATDS---DVGV-------NAQITYSLNEESINGLGSPDPFSINPQTGAIVTNAPLDRETTSG---YLLTVTAKDGGNPSLSDTTDVEIGVTDVNDNAPAFKSPLYQASILEDALVGTSVIQVAASDPDVGLNGRIKYLLSDRDIEDGSFVIDPTSGTIRTNKGLDRESVAVFHLTAIAVDKGSPPL--SSTVEVQIRLEDVNDSPPTFASDKITLYVPENSPVGSVVGEIHAHDPDEGVNAVVHYSIIGGDDSNAFSLVTRPGSERAQLLTMTELDYES-TRKRFELVVRAASPPLRNDAHIE------ILVTDVNDNAP---VLRDFQVIFN 1228 HSP 3 Score: 150.599 bits (379), Expect = 4.891e-36 Identity = 172/695 (24.75%), Postives = 307/695 (44.17%), Query Frame = 3
Query: 531 IVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFD-KDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKD--KTSRLQFII-VPTINVEIAK-----TFAI-SDQGIIYLIKHLDYETAPKYEIPVRVTDGEFSSNGR------VEVVIIDVNDCAPQFTLNPENLVISENTLTKT---LLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKIN-----IYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLT-NGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPI-SLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADI 2537
+ ++ + P+F+ A Y ++ E G ++ RA D +D ++ + +S + + F S+ G ++ LD E +D H ++A + ++P R + + + + + D ND+ P F + I E + ++ L+ATD+D K + +++ I T +A+ F I S G+I LD ET+ Y + V D + + R V+V ++D ND PQF+ + + E+ T + +I D D N A+R+ I N++ I+ + L + +D + + R + ++I G + + T + + V+DANDN+P+F + + V EN+ Y +I V A D D+G N++I Y IS+ +D +G + I+ LDRE+Q + VVA D + +++++V I V DVND P N +V E+QP GT + + ATD D ++ + + + F + + NG L ++ + + +F L + D G S V I I D N+ +P P +A + D + VS T+S D G N Q+ +S+ I L S F +N AI + + +L+T+ AKD G+P + + + D+
Sbjct: 348 VRRELRNQSPYFEQALYVASVLEE-QPAGAAVTTVRARDPEDSPVVYSMVSLLDSRSQSLFKVD-SRTG--VVTTSASLDRELMDVHYFRVVATDDSFPPR-SGTTTLQVNVLDCNDHSPTFEAEQFEASIREGATVGSTVITLRATDQDIGKNAEIEYGIEAVTDGAGLAQDQEMPIFRIDSRSGVISTRSSLDRETSDSYHLLVTAADLASAQSERRTATASVQVKVLDDNDNYPQFSERTYTVQVPEDQWGGTEDNTVAHIRATDADQGN------------NAAIRYAIIGGNTQSQFSIDSMSGDVSLVKPLDYESV---RSYRLVIRAQDGGSPSRSNTTQLLVNVIDANDNAPRFYTSQFQESVLENVPVGYNIIRVQAYDSDEGANAEITYSISERDDNFPLAVDPRTGWVQTIKPLDREEQGRFAFQVVAKDGGVPP--KSASSSVVITVQDVNDNDPAFNPKYYEANVGEDQPPGTPVTTVTATDPD--EDSRLHYEITTGNTRGRFAITSQNGRGLITIAQSLDYKQEKRFLLTVAATDSGGR---SDTATVHINITDANNFAPIFENAP--YSASVFEDAPVGTTVLVVSATDS-------------DVGVNAQITYSLNEESINGLGSPDPFSINPQTGAIVTNAPLDRETTSGYLLTVTAKDGGNPSLSDTTDVEIGVTDV 1000 HSP 4 Score: 96.2857 bits (238), Expect = 1.624e-19 Identity = 152/651 (23.35%), Postives = 273/651 (41.94%), Query Frame = 3
Query: 369 FSLKPGSSMLTTSKLIDLESLCGSSDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSV-SKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEI------AKTFAISDQ-GIIYLIKHLDYETAPKYEIPVRVTDG---EFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKI------NIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSG----KIIGIQSLDREK-QDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFEL-LTNGSLLTKVSFD-------------RESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAA 2213
++ P + + T K +D E G FQVVA + I V+DVNDNDP F Y N+ E PG + A D D ++++ Y + +T F++ S++G+ ++ I + LD + + L+ +A + TA++ I I D N+ P F + Y + E+ + +L + ATD D Q I ++N E F+I+ Q G I LD ET Y + V DG S VE+ + DVND AP F I E+ L T + + D D N +++ +++ + E + I N+ +DR+ + ++ + D G + ++T V + + D ND+ P F + V EN + ++ A D D+GVN+ + Y I F + G +++ + LD E + +++ V A + H + I V DVND AP + + F+ + + IG++ A D D+ + K + ++ ++ L ++G L+ + + +++ K ++++VR I E++ +S T ++ +E SP ++ D +AA
Sbjct: 737 LAVDPRTGWVQTIKPLDREE--------QGRFAFQVVAKDGGVPPKSASSSVVITVQDVNDNDPAFNPKYYEANVGED-QPPGTPVTTVTATDPDE---DSRLHYEITTGNTRGRFAITSQNGRGLITIAQSLDYKQ-EKRFLLTVAATDSGGRSDTATVHINIT--DANNFAPIFENAPYSASVFEDAPVGTTVLVVSATDSDVGVNAQ--ITYSLNEESINGLGSPDPFSINPQTGAIVTNAPLDRETTSGYLLTVTAKDGGNPSLSDTTDVEIGVTDVNDNAPAFKSPLYQASILEDALVGTSVIQVAASDPDVGL------------NGRIKYLLSDRDIEDGSFVIDPTSGTIRTNKGLDRESVAVFHLTAIAV--DKG-SPPLSSTVEVQIRLEDVNDSPPTFASDKITLYVPENSPVGSVVGEIHAHDPDEGVNAVVHYSIIGGDDSNAFSLVTRPGSERAQLLTMTELDYESTRKRFELVVRAASPPLRNDAH-----IEILVTDVNDNAPVLRDFQVIFNNFRDHFPSGEIGRIPAFDADV--SDKLHYRILSGNNANLLRLNSSSGGLVLSPQLNTNVPKFATMEVSVSDGINEAKAIMQLSVRLITEDMLFNSVTVRLNEMTEEAFLSPLLNFFLDGLAA 1348
BLAST of Protocadherin gamma vs. Ensembl Fly
Match: stan (gene:FBgn0024836 transcript:FBtr0330601) HSP 1 Score: 182.57 bits (462), Expect = 6.580e-46 Identity = 210/816 (25.74%), Postives = 361/816 (44.24%), Query Frame = 3
Query: 249 IKENQPPGLVVGNLLDNLPYKQYFISPGYHFV--LQKESEEFFSLKPGSSMLTTSKLIDLESLCGSSDCYNGTKEFQVVAL--VMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILII---------IKELDAETIDTHRLILIAWN--QNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENV---ELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAI-SDQGIIYLIKHLDYETAPKYEIPVRVTDG---EFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKIN-----IYLNQEIDRDQINGDRRFSV-IICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGK--IIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTL---------IPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADI---PPRLIDQNISM 2570
+ E QP G V + P + Y V L S+ F + + ++TTS +D E + F+VVA + L++N++ D ND+ P F+ + +I+E G ++ RA D+D+ N +I Y ++ + + ++ PI I LD ET D++ L++ A + R TA+ + + + D NDN P+FS+ Y V + E+ ++ + ++ATD D+ + I I F+I S G + L+K LDYE+ Y + +R DG S+ ++ V +ID ND AP+F + + EN + + YD D EG+ N + + I+E + ++ + + +DR++ RF+ ++ D G+ + ++ V NDN P F Y V E+ P P+ V+ATD D+ +S++ Y I+ + F I +G+ I QSLD +++ + +TV ATD + TATVHI++ D N+ AP + + SV+E+ P+GT + + ATD D+G N + ++L P FS + G+++T DRE+ S + L +T +D G LS T V I + D NDN+P P + A ++ + + + SD D G NG++ + + I S F ++ T I+ + + F +T IA DKGSPP ++ + ++ D+ PP I++
Sbjct: 368 VLEEQPAGAAVTTVRARDPEDSPVV---YSMVSLLDSRSQSLFKVDSRTGVVTTSASLDRELM--------DVHYFRVVATDDSFPPRSGTTTLQVNVL--DCNDHSPTFEAEQFEASIREGAT-VGSTVITLRATDQDIGK-NAEIEYGIEAVTDGAGLAQDQE-MPIFRIDSRSGVISTRSSLDRETSDSYHLLVTAADLASAQSERRTATASVQVKVLDDNDNYPQFSERTYTVQVPEDQWGGTEDNTVAHIRATDADQGNNAA-IRYAIIGGNTQSQFSIDSMSGDVSLVKPLDYESVRSYRLVIRAQDGGSPSRSNTTQLLVNVIDANDNAPRFYTSQFQESVLENVPVGYNIIRVQAYDSD-----------EGA-NAEITYSISERDDNFPLAVDPRTGWVQTIKPLDREEQG---RFAFQVVAKDGGVPPKSASSSVVITVQDV-NDNDPAFNPKYYEANVGEDQPPGTPVTTVTATDPDE--DSRLHYEITTGNTRGRFAITSQNGRGLITIAQSLDYKQEKRFLLTVAATDSG----GRSDTATVHINITDANNFAPIFENAPYSASVFEDAPVGTTVLVVSATDSDVGVNAQITYSLNEESINGLGSPDPFSINPQ---TGAIVTNAPLDRETTS--GYLLTVTAKDGGNP-SLSDTTDVEIGVTDVNDNAPAFKS-PLYQA--------------SILEDALVGTSVIQVAASDPDVGLNGRIKYLLSDRDIEDGS---FVIDPTSGTIRTNKGLDRESVAVFHLTAIAVDKGSPPLSSTVEVQIRLEDVNDSPPTFASDKITL 1120 HSP 2 Score: 164.466 bits (415), Expect = 2.835e-40 Identity = 176/592 (29.73%), Postives = 273/592 (46.11%), Query Frame = 3
Query: 513 ELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGP-GKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAISDQ---GIIYLIKHLDYETAPKYEIPVRVTD-GEFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENN-----SERTKKIN-----IYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDH-THQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLT-----NGSLLTKVSFDRESLSQVKFSL--RITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYN 2219
+L +N+I D NDN P F + + +++ E + P G +I +A+D D N +I+YS+ E F +V + I K LD E ++A + P + +AS + I + D+NDN+P F+ Y + E+ + + ATD D+ SRL + I T N FAI+ Q G+I + + LDY+ ++ + V TD G S V + I D N+ AP F P + + E+ T + +VV DS D G+ N + + + E + S IN I N +DR+ +G + + + G N + T V + V D NDN+P F Y + E+ +I V+A+D D G+N +IKY +SD F ID SG I + LDRE + +T +A D + +ST V I + DVND P T V EN P+G+V+G++ A D D G N +++I S+ F L+T LLT D ES ++ +F L R + + H+ I + D NDN+P V+ DF +N
Sbjct: 674 QLLVNVI--DANDNAPRFYTSQFQESVLENV--PVGYNIIRVQAYDSDEG-ANAEITYSISERDDNFPLAVDPRTGWVQTI-KPLDREEQGRFAFQVVAKDGGVPPK-SASSSVVITVQDVNDNDPAFNPKYYEANVGEDQPPGTPVTTVTATDPDEDSRLHYEIT-TGNTR--GRFAITSQNGRGLITIAQSLDYKQEKRFLLTVAATDSGGRSDTATVHINITDANNFAPIFENAPYSASVFEDAPVGTTV--LVVSATDS---DVGV-------NAQITYSLNEESINGLGSPDPFSINPQTGAIVTNAPLDRETTSG---YLLTVTAKDGGNPSLSDTTDVEIGVTDVNDNAPAFKSPLYQASILEDALVGTSVIQVAASDPDVGLNGRIKYLLSDRDIEDGSFVIDPTSGTIRTNKGLDRESVAVFHLTAIAVDKGSPPL--SSTVEVQIRLEDVNDSPPTFASDKITLYVPENSPVGSVVGEIHAHDPDEGVNAVVHYSIIGGDDSNAFSLVTRPGSERAQLLTMTELDYES-TRKRFELVVRAASPPLRNDAHIE------ILVTDVNDNAP---VLRDFQVIFN 1228 HSP 3 Score: 150.599 bits (379), Expect = 4.872e-36 Identity = 172/695 (24.75%), Postives = 307/695 (44.17%), Query Frame = 3
Query: 531 IVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFD-KDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKD--KTSRLQFII-VPTINVEIAK-----TFAI-SDQGIIYLIKHLDYETAPKYEIPVRVTDGEFSSNGR------VEVVIIDVNDCAPQFTLNPENLVISENTLTKT---LLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKIN-----IYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLT-NGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPI-SLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADI 2537
+ ++ + P+F+ A Y ++ E G ++ RA D +D ++ + +S + + F S+ G ++ LD E +D H ++A + ++P R + + + + + D ND+ P F + I E + ++ L+ATD+D K + +++ I T +A+ F I S G+I LD ET+ Y + V D + + R V+V ++D ND PQF+ + + E+ T + +I D D N A+R+ I N++ I+ + L + +D + + R + ++I G + + T + + V+DANDN+P+F + + V EN+ Y +I V A D D+G N++I Y IS+ +D +G + I+ LDRE+Q + VVA D + +++++V I V DVND P N +V E+QP GT + + ATD D ++ + + + F + + NG L ++ + + +F L + D G S V I I D N+ +P P +A + D + VS T+S D G N Q+ +S+ I L S F +N AI + + +L+T+ AKD G+P + + + D+
Sbjct: 348 VRRELRNQSPYFEQALYVASVLEE-QPAGAAVTTVRARDPEDSPVVYSMVSLLDSRSQSLFKVD-SRTG--VVTTSASLDRELMDVHYFRVVATDDSFPPR-SGTTTLQVNVLDCNDHSPTFEAEQFEASIREGATVGSTVITLRATDQDIGKNAEIEYGIEAVTDGAGLAQDQEMPIFRIDSRSGVISTRSSLDRETSDSYHLLVTAADLASAQSERRTATASVQVKVLDDNDNYPQFSERTYTVQVPEDQWGGTEDNTVAHIRATDADQGN------------NAAIRYAIIGGNTQSQFSIDSMSGDVSLVKPLDYESV---RSYRLVIRAQDGGSPSRSNTTQLLVNVIDANDNAPRFYTSQFQESVLENVPVGYNIIRVQAYDSDEGANAEITYSISERDDNFPLAVDPRTGWVQTIKPLDREEQGRFAFQVVAKDGGVPP--KSASSSVVITVQDVNDNDPAFNPKYYEANVGEDQPPGTPVTTVTATDPD--EDSRLHYEITTGNTRGRFAITSQNGRGLITIAQSLDYKQEKRFLLTVAATDSGGR---SDTATVHINITDANNFAPIFENAP--YSASVFEDAPVGTTVLVVSATDS-------------DVGVNAQITYSLNEESINGLGSPDPFSINPQTGAIVTNAPLDRETTSGYLLTVTAKDGGNPSLSDTTDVEIGVTDV 1000 HSP 4 Score: 96.2857 bits (238), Expect = 1.642e-19 Identity = 152/651 (23.35%), Postives = 273/651 (41.94%), Query Frame = 3
Query: 369 FSLKPGSSMLTTSKLIDLESLCGSSDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSV-SKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEI------AKTFAISDQ-GIIYLIKHLDYETAPKYEIPVRVTDG---EFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKI------NIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSG----KIIGIQSLDREK-QDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFEL-LTNGSLLTKVSFD-------------RESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAA 2213
++ P + + T K +D E G FQVVA + I V+DVNDNDP F Y N+ E PG + A D D ++++ Y + +T F++ S++G+ ++ I + LD + + L+ +A + TA++ I I D N+ P F + Y + E+ + +L + ATD D Q I ++N E F+I+ Q G I LD ET Y + V DG S VE+ + DVND AP F I E+ L T + + D D N +++ +++ + E + I N+ +DR+ + ++ + D G + ++T V + + D ND+ P F + V EN + ++ A D D+GVN+ + Y I F + G +++ + LD E + +++ V A + H + I V DVND AP + + F+ + + IG++ A D D+ + K + ++ ++ L ++G L+ + + +++ K ++++VR I E++ +S T ++ +E SP ++ D +AA
Sbjct: 737 LAVDPRTGWVQTIKPLDREE--------QGRFAFQVVAKDGGVPPKSASSSVVITVQDVNDNDPAFNPKYYEANVGED-QPPGTPVTTVTATDPDE---DSRLHYEITTGNTRGRFAITSQNGRGLITIAQSLDYKQ-EKRFLLTVAATDSGGRSDTATVHINIT--DANNFAPIFENAPYSASVFEDAPVGTTVLVVSATDSDVGVNAQ--ITYSLNEESINGLGSPDPFSINPQTGAIVTNAPLDRETTSGYLLTVTAKDGGNPSLSDTTDVEIGVTDVNDNAPAFKSPLYQASILEDALVGTSVIQVAASDPDVGL------------NGRIKYLLSDRDIEDGSFVIDPTSGTIRTNKGLDRESVAVFHLTAIAV--DKG-SPPLSSTVEVQIRLEDVNDSPPTFASDKITLYVPENSPVGSVVGEIHAHDPDEGVNAVVHYSIIGGDDSNAFSLVTRPGSERAQLLTMTELDYESTRKRFELVVRAASPPLRNDAH-----IEILVTDVNDNAPVLRDFQVIFNNFRDHFPSGEIGRIPAFDADV--SDKLHYRILSGNNANLLRLNSSSGGLVLSPQLNTNVPKFATMEVSVSDGINEAKAIMQLSVRLITEDMLFNSVTVRLNEMTEEAFLSPLLNFFLDGLAA 1348
BLAST of Protocadherin gamma vs. Ensembl Fly
Match: stan (gene:FBgn0024836 transcript:FBtr0339463) HSP 1 Score: 182.57 bits (462), Expect = 7.578e-46 Identity = 210/816 (25.74%), Postives = 361/816 (44.24%), Query Frame = 3
Query: 249 IKENQPPGLVVGNLLDNLPYKQYFISPGYHFV--LQKESEEFFSLKPGSSMLTTSKLIDLESLCGSSDCYNGTKEFQVVAL--VMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILII---------IKELDAETIDTHRLILIAWN--QNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENV---ELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAI-SDQGIIYLIKHLDYETAPKYEIPVRVTDG---EFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKIN-----IYLNQEIDRDQINGDRRFSV-IICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGK--IIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTL---------IPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADI---PPRLIDQNISM 2570
+ E QP G V + P + Y V L S+ F + + ++TTS +D E + F+VVA + L++N++ D ND+ P F+ + +I+E G ++ RA D+D+ N +I Y ++ + + ++ PI I LD ET D++ L++ A + R TA+ + + + D NDN P+FS+ Y V + E+ ++ + ++ATD D+ + I I F+I S G + L+K LDYE+ Y + +R DG S+ ++ V +ID ND AP+F + + EN + + YD D EG+ N + + I+E + ++ + + +DR++ RF+ ++ D G+ + ++ V NDN P F Y V E+ P P+ V+ATD D+ +S++ Y I+ + F I +G+ I QSLD +++ + +TV ATD + TATVHI++ D N+ AP + + SV+E+ P+GT + + ATD D+G N + ++L P FS + G+++T DRE+ S + L +T +D G LS T V I + D NDN+P P + A ++ + + + SD D G NG++ + + I S F ++ T I+ + + F +T IA DKGSPP ++ + ++ D+ PP I++
Sbjct: 368 VLEEQPAGAAVTTVRARDPEDSPVV---YSMVSLLDSRSQSLFKVDSRTGVVTTSASLDRELM--------DVHYFRVVATDDSFPPRSGTTTLQVNVL--DCNDHSPTFEAEQFEASIREGAT-VGSTVITLRATDQDIGK-NAEIEYGIEAVTDGAGLAQDQE-MPIFRIDSRSGVISTRSSLDRETSDSYHLLVTAADLASAQSERRTATASVQVKVLDDNDNYPQFSERTYTVQVPEDQWGGTEDNTVAHIRATDADQGNNAA-IRYAIIGGNTQSQFSIDSMSGDVSLVKPLDYESVRSYRLVIRAQDGGSPSRSNTTQLLVNVIDANDNAPRFYTSQFQESVLENVPVGYNIIRVQAYDSD-----------EGA-NAEITYSISERDDNFPLAVDPRTGWVQTIKPLDREEQG---RFAFQVVAKDGGVPPKSASSSVVITVQDV-NDNDPAFNPKYYEANVGEDQPPGTPVTTVTATDPDE--DSRLHYEITTGNTRGRFAITSQNGRGLITIAQSLDYKQEKRFLLTVAATDSG----GRSDTATVHINITDANNFAPIFENAPYSASVFEDAPVGTTVLVVSATDSDVGVNAQITYSLNEESINGLGSPDPFSINPQ---TGAIVTNAPLDRETTS--GYLLTVTAKDGGNP-SLSDTTDVEIGVTDVNDNAPAFKS-PLYQA--------------SILEDALVGTSVIQVAASDPDVGLNGRIKYLLSDRDIEDGS---FVIDPTSGTIRTNKGLDRESVAVFHLTAIAVDKGSPPLSSTVEVQIRLEDVNDSPPTFASDKITL 1120 HSP 2 Score: 164.081 bits (414), Expect = 3.183e-40 Identity = 176/588 (29.93%), Postives = 271/588 (46.09%), Query Frame = 3
Query: 513 ELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGP-GKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAISDQ---GIIYLIKHLDYETAPKYEIPVRVTD-GEFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECR------EGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDH-THQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLT-----NGSLLTKVSFDRESLSQVKFSL--RITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYN 2219
+L +N+I D NDN P F + + +++ E + P G +I +A+D D N +I+YS+ E F +V + I K LD E ++A + P + +AS + I + D+NDN+P F+ Y + E+ + + ATD D+ SRL + I T N FAI+ Q G+I + + LDY+ ++ + V TD G S V + I D N+ AP F P + + E+ T + +VV DS D G+ + E S N D N + I N +DR+ +G + + + G N + T V + V D NDN+P F Y + E+ +I V+A+D D G+N +IKY +SD F ID SG I + LDRE + +T +A D + +ST V I + DVND P T V EN P+G+V+G++ A D D G N +++I S+ F L+T LLT D ES ++ +F L R + + H+ I + D NDN+P V+ DF +N
Sbjct: 674 QLLVNVI--DANDNAPRFYTSQFQESVLENV--PVGYNIIRVQAYDSDEG-ANAEITYSISERDDNFPLAVDPRTGWVQTI-KPLDREEQGRFAFQVVAKDGGVPPK-SASSSVVITVQDVNDNDPAFNPKYYEANVGEDQPPGTPVTTVTATDPDEDSRLHYEIT-TGNTR--GRFAITSQNGRGLITIAQSLDYKQEKRFLLTVAATDSGGRSDTATVHINITDANNFAPIFENAPYSASVFEDAPVGTTV--LVVSATDS---DVGVNAQITYSLNEESINGLGSPDPFSINPQTGA---IVTNAPLDRETTSG---YLLTVTAKDGGNPSLSDTTDVEIGVTDVNDNAPAFKSPLYQASILEDALVGTSVIQVAASDPDVGLNGRIKYLLSDRDIEDGSFVIDPTSGTIRTNKGLDRESVAVFHLTAIAVDKGSPPL--SSTVEVQIRLEDVNDSPPTFASDKITLYVPENSPVGSVVGEIHAHDPDEGVNAVVHYSIIGGDDSNAFSLVTRPGSERAQLLTMTELDYES-TRKRFELVVRAASPPLRNDAHIE------ILVTDVNDNAP---VLRDFQVIFN 1228 HSP 3 Score: 150.214 bits (378), Expect = 5.424e-36 Identity = 172/695 (24.75%), Postives = 307/695 (44.17%), Query Frame = 3
Query: 531 IVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFD-KDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKD--KTSRLQFII-VPTINVEIAK-----TFAI-SDQGIIYLIKHLDYETAPKYEIPVRVTDGEFSSNGR------VEVVIIDVNDCAPQFTLNPENLVISENTLTKT---LLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKIN-----IYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLT-NGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPI-SLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADI 2537
+ ++ + P+F+ A Y ++ E G ++ RA D +D ++ + +S + + F S+ G ++ LD E +D H ++A + ++P R + + + + + D ND+ P F + I E + ++ L+ATD+D K + +++ I T +A+ F I S G+I LD ET+ Y + V D + + R V+V ++D ND PQF+ + + E+ T + +I D D N A+R+ I N++ I+ + L + +D + + R + ++I G + + T + + V+DANDN+P+F + + V EN+ Y +I V A D D+G N++I Y IS+ +D +G + I+ LDRE+Q + VVA D + +++++V I V DVND P N +V E+QP GT + + ATD D ++ + + + F + + NG L ++ + + +F L + D G S V I I D N+ +P P +A + D + VS T+S D G N Q+ +S+ I L S F +N AI + + +L+T+ AKD G+P + + + D+
Sbjct: 348 VRRELRNQSPYFEQALYVASVLEE-QPAGAAVTTVRARDPEDSPVVYSMVSLLDSRSQSLFKVD-SRTG--VVTTSASLDRELMDVHYFRVVATDDSFPPR-SGTTTLQVNVLDCNDHSPTFEAEQFEASIREGATVGSTVITLRATDQDIGKNAEIEYGIEAVTDGAGLAQDQEMPIFRIDSRSGVISTRSSLDRETSDSYHLLVTAADLASAQSERRTATASVQVKVLDDNDNYPQFSERTYTVQVPEDQWGGTEDNTVAHIRATDADQGN------------NAAIRYAIIGGNTQSQFSIDSMSGDVSLVKPLDYESV---RSYRLVIRAQDGGSPSRSNTTQLLVNVIDANDNAPRFYTSQFQESVLENVPVGYNIIRVQAYDSDEGANAEITYSISERDDNFPLAVDPRTGWVQTIKPLDREEQGRFAFQVVAKDGGVPP--KSASSSVVITVQDVNDNDPAFNPKYYEANVGEDQPPGTPVTTVTATDPD--EDSRLHYEITTGNTRGRFAITSQNGRGLITIAQSLDYKQEKRFLLTVAATDSGGR---SDTATVHINITDANNFAPIFENAP--YSASVFEDAPVGTTVLVVSATDS-------------DVGVNAQITYSLNEESINGLGSPDPFSINPQTGAIVTNAPLDRETTSGYLLTVTAKDGGNPSLSDTTDVEIGVTDV 1000 HSP 4 Score: 96.2857 bits (238), Expect = 1.799e-19 Identity = 152/651 (23.35%), Postives = 273/651 (41.94%), Query Frame = 3
Query: 369 FSLKPGSSMLTTSKLIDLESLCGSSDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSV-SKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEI------AKTFAISDQ-GIIYLIKHLDYETAPKYEIPVRVTDG---EFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKI------NIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSG----KIIGIQSLDREK-QDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFEL-LTNGSLLTKVSFD-------------RESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAA 2213
++ P + + T K +D E G FQVVA + I V+DVNDNDP F Y N+ E PG + A D D ++++ Y + +T F++ S++G+ ++ I + LD + + L+ +A + TA++ I I D N+ P F + Y + E+ + +L + ATD D Q I ++N E F+I+ Q G I LD ET Y + V DG S VE+ + DVND AP F I E+ L T + + D D N +++ +++ + E + I N+ +DR+ + ++ + D G + ++T V + + D ND+ P F + V EN + ++ A D D+GVN+ + Y I F + G +++ + LD E + +++ V A + H + I V DVND AP + + F+ + + IG++ A D D+ + K + ++ ++ L ++G L+ + + +++ K ++++VR I E++ +S T ++ +E SP ++ D +AA
Sbjct: 737 LAVDPRTGWVQTIKPLDREE--------QGRFAFQVVAKDGGVPPKSASSSVVITVQDVNDNDPAFNPKYYEANVGED-QPPGTPVTTVTATDPDE---DSRLHYEITTGNTRGRFAITSQNGRGLITIAQSLDYKQ-EKRFLLTVAATDSGGRSDTATVHINIT--DANNFAPIFENAPYSASVFEDAPVGTTVLVVSATDSDVGVNAQ--ITYSLNEESINGLGSPDPFSINPQTGAIVTNAPLDRETTSGYLLTVTAKDGGNPSLSDTTDVEIGVTDVNDNAPAFKSPLYQASILEDALVGTSVIQVAASDPDVGL------------NGRIKYLLSDRDIEDGSFVIDPTSGTIRTNKGLDRESVAVFHLTAIAV--DKG-SPPLSSTVEVQIRLEDVNDSPPTFASDKITLYVPENSPVGSVVGEIHAHDPDEGVNAVVHYSIIGGDDSNAFSLVTRPGSERAQLLTMTELDYESTRKRFELVVRAASPPLRNDAH-----IEILVTDVNDNAPVLRDFQVIFNNFRDHFPSGEIGRIPAFDADV--SDKLHYRILSGNNANLLRLNSSSGGLVLSPQLNTNVPKFATMEVSVSDGINEAKAIMQLSVRLITEDMLFNSVTVRLNEMTEEAFLSPLLNFFLDGLAA 1348
BLAST of Protocadherin gamma vs. Ensembl Fly
Match: stan (gene:FBgn0024836 transcript:FBtr0303223) HSP 1 Score: 182.57 bits (462), Expect = 7.759e-46 Identity = 212/818 (25.92%), Postives = 361/818 (44.13%), Query Frame = 3
Query: 249 IKENQPPGLVVGNLLDNLPYKQYFISPGYHFV--LQKESEEFFSLKPGSSMLTTSKLIDLESLCGSSDCYNGTKEFQVVAL--VMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILII---------IKELDAETIDTHRLILIAWN--QNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENV---ELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAI-SDQGIIYLIKHLDYETAPKYEIPVRVTDG---EFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSE-------RTKKINIYLNQEIDRDQINGDRRFSV-IICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGK--IIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTL---------IPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADI---PPRLIDQNISM 2570
+ E QP G V + P + Y V L S+ F + + ++TTS +D E + F+VVA + L++N++ D ND+ P F+ + +I+E G ++ RA D+D+ N +I Y ++ + + ++ PI I LD ET D++ L++ A + R TA+ + + + D NDN P+FS+ Y V + E+ ++ + ++ATD D+ + I I F+I S G + L+K LDYE+ Y + +R DG S+ ++ V +ID ND AP+F + + EN + + YD D EG+ N + + I+E + RT + + +DR++ RF+ ++ D G+ + ++ V NDN P F Y V E+ P P+ V+ATD D+ +S++ Y I+ + F I +G+ I QSLD +++ + +TV ATD + TATVHI++ D N+ AP + + SV+E+ P+GT + + ATD D+G N + ++L P FS + G+++T DRE+ S + L +T +D G LS T V I + D NDN+P P + A ++ + + + SD D G NG++ + + I S F ++ T I+ + + F +T IA DKGSPP ++ + ++ D+ PP I++
Sbjct: 368 VLEEQPAGAAVTTVRARDPEDSPVV---YSMVSLLDSRSQSLFKVDSRTGVVTTSASLDRELM--------DVHYFRVVATDDSFPPRSGTTTLQVNVL--DCNDHSPTFEAEQFEASIREGAT-VGSTVITLRATDQDIGK-NAEIEYGIEAVTDGAGLAQDQE-MPIFRIDSRSGVISTRSSLDRETSDSYHLLVTAADLASAQSERRTATASVQVKVLDDNDNYPQFSERTYTVQVPEDQWGGTEDNTVAHIRATDADQGNNAA-IRYAIIGGNTQSQFSIDSMSGDVSLVKPLDYESVRSYRLVIRAQDGGSPSRSNTTQLLVNVIDANDNAPRFYTSQFQESVLENVPVGYNIIRVQAYDSD-----------EGA-NAEITYSISERDDNFPLAVDPRTGWVQTI--KPLDREEQG---RFAFQVVAKDGGVPPKSASSSVVITVQDV-NDNDPAFNPKYYEANVGEDQPPGTPVTTVTATDPDE--DSRLHYEITTGNTRGRFAITSQNGRGLITIAQSLDYKQEKRFLLTVAATDSG----GRSDTATVHINITDANNFAPIFENAPYSASVFEDAPVGTTVLVVSATDSDVGVNAQITYSLNEESINGLGSPDPFSINPQ---TGAIVTNAPLDRETTS--GYLLTVTAKDGGNP-SLSDTTDVEIGVTDVNDNAPAFKS-PLYQA--------------SILEDALVGTSVIQVAASDPDVGLNGRIKYLLSDRDIEDGS---FVIDPTSGTIRTNKGLDRESVAVFHLTAIAVDKGSPPLSSTVEVQIRLEDVNDSPPTFASDKITL 1120 HSP 2 Score: 164.081 bits (414), Expect = 3.205e-40 Identity = 176/592 (29.73%), Postives = 273/592 (46.11%), Query Frame = 3
Query: 513 ELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGP-GKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAISDQ---GIIYLIKHLDYETAPKYEIPVRVTD-GEFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENN-----SERTKKIN-----IYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDH-THQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLT-----NGSLLTKVSFDRESLSQVKFSL--RITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYN 2219
+L +N+I D NDN P F + + +++ E + P G +I +A+D D N +I+YS+ E F +V + I K LD E ++A + P + +AS + I + D+NDN+P F+ Y + E+ + + ATD D+ SRL + I T N FAI+ Q G+I + + LDY+ ++ + V TD G S V + I D N+ AP F P + + E+ T + +VV DS D G+ N + + + E + S IN I N +DR+ +G + + + G N + T V + V D NDN+P F Y + E+ +I V+A+D D G+N +IKY +SD F ID SG I + LDRE + +T +A D + +ST V I + DVND P T V EN P+G+V+G++ A D D G N +++I S+ F L+T LLT D ES ++ +F L R + + H+ I + D NDN+P V+ DF +N
Sbjct: 674 QLLVNVI--DANDNAPRFYTSQFQESVLENV--PVGYNIIRVQAYDSDEG-ANAEITYSISERDDNFPLAVDPRTGWVQTI-KPLDREEQGRFAFQVVAKDGGVPPK-SASSSVVITVQDVNDNDPAFNPKYYEANVGEDQPPGTPVTTVTATDPDEDSRLHYEIT-TGNTR--GRFAITSQNGRGLITIAQSLDYKQEKRFLLTVAATDSGGRSDTATVHINITDANNFAPIFENAPYSASVFEDAPVGTTV--LVVSATDS---DVGV-------NAQITYSLNEESINGLGSPDPFSINPQTGAIVTNAPLDRETTSG---YLLTVTAKDGGNPSLSDTTDVEIGVTDVNDNAPAFKSPLYQASILEDALVGTSVIQVAASDPDVGLNGRIKYLLSDRDIEDGSFVIDPTSGTIRTNKGLDRESVAVFHLTAIAVDKGSPPL--SSTVEVQIRLEDVNDSPPTFASDKITLYVPENSPVGSVVGEIHAHDPDEGVNAVVHYSIIGGDDSNAFSLVTRPGSERAQLLTMTELDYES-TRKRFELVVRAASPPLRNDAHIE------ILVTDVNDNAP---VLRDFQVIFN 1228 HSP 3 Score: 150.214 bits (378), Expect = 5.603e-36 Identity = 172/695 (24.75%), Postives = 307/695 (44.17%), Query Frame = 3
Query: 531 IVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFD-KDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKD--KTSRLQFII-VPTINVEIAK-----TFAI-SDQGIIYLIKHLDYETAPKYEIPVRVTDGEFSSNGR------VEVVIIDVNDCAPQFTLNPENLVISENTLTKT---LLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKIN-----IYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLT-NGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPI-SLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADI 2537
+ ++ + P+F+ A Y ++ E G ++ RA D +D ++ + +S + + F S+ G ++ LD E +D H ++A + ++P R + + + + + D ND+ P F + I E + ++ L+ATD+D K + +++ I T +A+ F I S G+I LD ET+ Y + V D + + R V+V ++D ND PQF+ + + E+ T + +I D D N A+R+ I N++ I+ + L + +D + + R + ++I G + + T + + V+DANDN+P+F + + V EN+ Y +I V A D D+G N++I Y IS+ +D +G + I+ LDRE+Q + VVA D + +++++V I V DVND P N +V E+QP GT + + ATD D ++ + + + F + + NG L ++ + + +F L + D G S V I I D N+ +P P +A + D + VS T+S D G N Q+ +S+ I L S F +N AI + + +L+T+ AKD G+P + + + D+
Sbjct: 348 VRRELRNQSPYFEQALYVASVLEE-QPAGAAVTTVRARDPEDSPVVYSMVSLLDSRSQSLFKVD-SRTG--VVTTSASLDRELMDVHYFRVVATDDSFPPR-SGTTTLQVNVLDCNDHSPTFEAEQFEASIREGATVGSTVITLRATDQDIGKNAEIEYGIEAVTDGAGLAQDQEMPIFRIDSRSGVISTRSSLDRETSDSYHLLVTAADLASAQSERRTATASVQVKVLDDNDNYPQFSERTYTVQVPEDQWGGTEDNTVAHIRATDADQGN------------NAAIRYAIIGGNTQSQFSIDSMSGDVSLVKPLDYESV---RSYRLVIRAQDGGSPSRSNTTQLLVNVIDANDNAPRFYTSQFQESVLENVPVGYNIIRVQAYDSDEGANAEITYSISERDDNFPLAVDPRTGWVQTIKPLDREEQGRFAFQVVAKDGGVPP--KSASSSVVITVQDVNDNDPAFNPKYYEANVGEDQPPGTPVTTVTATDPD--EDSRLHYEITTGNTRGRFAITSQNGRGLITIAQSLDYKQEKRFLLTVAATDSGGR---SDTATVHINITDANNFAPIFENAP--YSASVFEDAPVGTTVLVVSATDS-------------DVGVNAQITYSLNEESINGLGSPDPFSINPQTGAIVTNAPLDRETTSGYLLTVTAKDGGNPSLSDTTDVEIGVTDV 1000 HSP 4 Score: 96.2857 bits (238), Expect = 1.782e-19 Identity = 152/651 (23.35%), Postives = 273/651 (41.94%), Query Frame = 3
Query: 369 FSLKPGSSMLTTSKLIDLESLCGSSDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSV-SKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEI------AKTFAISDQ-GIIYLIKHLDYETAPKYEIPVRVTDG---EFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKI------NIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSG----KIIGIQSLDREK-QDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFEL-LTNGSLLTKVSFD-------------RESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAA 2213
++ P + + T K +D E G FQVVA + I V+DVNDNDP F Y N+ E PG + A D D ++++ Y + +T F++ S++G+ ++ I + LD + + L+ +A + TA++ I I D N+ P F + Y + E+ + +L + ATD D Q I ++N E F+I+ Q G I LD ET Y + V DG S VE+ + DVND AP F I E+ L T + + D D N +++ +++ + E + I N+ +DR+ + ++ + D G + ++T V + + D ND+ P F + V EN + ++ A D D+GVN+ + Y I F + G +++ + LD E + +++ V A + H + I V DVND AP + + F+ + + IG++ A D D+ + K + ++ ++ L ++G L+ + + +++ K ++++VR I E++ +S T ++ +E SP ++ D +AA
Sbjct: 737 LAVDPRTGWVQTIKPLDREE--------QGRFAFQVVAKDGGVPPKSASSSVVITVQDVNDNDPAFNPKYYEANVGED-QPPGTPVTTVTATDPDE---DSRLHYEITTGNTRGRFAITSQNGRGLITIAQSLDYKQ-EKRFLLTVAATDSGGRSDTATVHINIT--DANNFAPIFENAPYSASVFEDAPVGTTVLVVSATDSDVGVNAQ--ITYSLNEESINGLGSPDPFSINPQTGAIVTNAPLDRETTSGYLLTVTAKDGGNPSLSDTTDVEIGVTDVNDNAPAFKSPLYQASILEDALVGTSVIQVAASDPDVGL------------NGRIKYLLSDRDIEDGSFVIDPTSGTIRTNKGLDRESVAVFHLTAIAV--DKG-SPPLSSTVEVQIRLEDVNDSPPTFASDKITLYVPENSPVGSVVGEIHAHDPDEGVNAVVHYSIIGGDDSNAFSLVTRPGSERAQLLTMTELDYESTRKRFELVVRAASPPLRNDAH-----IEILVTDVNDNAPVLRDFQVIFNNFRDHFPSGEIGRIPAFDADV--SDKLHYRILSGNNANLLRLNSSSGGLVLSPQLNTNVPKFATMEVSVSDGINEAKAIMQLSVRLITEDMLFNSVTVRLNEMTEEAFLSPLLNFFLDGLAA 1348
BLAST of Protocadherin gamma vs. Ensembl Zebrafish
Match: pcdh1a (protocadherin 1a [Source:ZFIN;Acc:ZDB-GENE-091116-32]) HSP 1 Score: 226.483 bits (576), Expect = 2.614e-60 Identity = 219/792 (27.65%), Postives = 360/792 (45.45%), Query Frame = 3
Query: 225 SFGTIKYWIKENQPPGLVVGNLLDNLPYKQYFISPGYHFVLQKESEEFFSLKPGSSMLTTSKLIDLESLCGSSDCYNGTK----EFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQ---ETSTYFHFSVSKDGK---PILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKD--KTSRLQFIIVPTINVEIAKTFAI-SDQGIIYLIKHLDYETAPKYEIPVRVTD---GEFSSNGRVEVVIIDVNDCAPQFTLNPENLV--------ISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSV-IICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKY-FISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMV 2522
+ G I Y + E QPP ++G+L + Q G+ + L+ + + TT ID E+L DC N K EF+V + Q + + I V+D+NDN P F + T ++ E + G +P A DKD N Y+L E F V++D P LI++ LD E D++ L + A + P R +++L + +VI D NDN P+F +S Y + EN + H +LQ+KA D D +++ + I+ + K I GIIY+ LD E + V D SS V + + D ND AP + LV ISE+ T + + V D+D ++ + C ++++ + +K + +D +++ R + V I+ D G N ++T ++ + V D NDNSP F+ T + V E +P +++V A+D D G N+++ Y I+D + + F+ID NSG++ LDRE +D Y+ V A D + H TATV I V+D ND P+ S +FSV EN P + +G + D D G+N + ++ P + T G++L+ +SFDRE S F L+ G + SS V I +LDENDN+P ++ + I +S + +S + D+D G N ++ +S+ + LFY++ + I L + + + + D+G P R ++ +
Sbjct: 21 AVGGILYRVHEEQPPSTLIGSLAAD----QGLPDTGHLYKLEVGAPYLRVDGKTGDIFTTEIPIDRETL---KDCRNKGKPCFLEFEVSVTDLIQNQSPRLIEGRIEVQDINDNTPQFPSPVLTLSVPENTHM-GALFSIPLATDKDTER-NGVADYTLTAGPEAVALFGLQVAEDRGEKLPQLIVLGSLDRELKDSYDLTIKAVDGGNPPRYSSAL-LRVVIADANDNAPKFEKSSYEAEVAENSPIGHSVLQVKANDSDLGPNGEIEYTLHQAID-PVPKLLRIDRSSGIIYVKGPLDREEINNLKFYVVARDKGPSPKSSKTYVSIDVTDQNDNAPAVEIRGIGLVTHSDGVANISEDMPVGTAVALVQVSDKDEGE-NAVVTCVVAGDVPFQLRPASDSSVDNKRKYFLQTTTPLDYERV---RDYRVEIVAVDSG-NPALSSTNSLKVQVTDTNDNSPIFSPTLFEVEFAEENQPGEKVVEVVASDADSGTNAELVYSIIADSSTRGLFEIDPNSGEVRARSPLDREHKDRYEFRVTAADKGVPS--HRGTATVVIKVLDRNDNDPKFMLSGYSFSVLENMPPLSPVGMVTVQDMDEGENAQVQLSVEPDVGKFVIQNGT-GTILSSISFDREKESSYTFRLKAV---DGGDPPRSSYVGVTINVLDENDNAPVVT-------------KPSNSSFIRLSPMAAPDSVVEVVEAEDIDSGSNAELVYSIA----GGNPHDLFYISPSNGEITLTKELTRKHSGLHRLVIKVSDRGKPSRHAIALVHI 773
BLAST of Protocadherin gamma vs. Ensembl Zebrafish
Match: pcdh1a (protocadherin 1a [Source:ZFIN;Acc:ZDB-GENE-091116-32]) HSP 1 Score: 227.254 bits (578), Expect = 4.170e-60 Identity = 221/792 (27.90%), Postives = 360/792 (45.45%), Query Frame = 3
Query: 225 SFGTIKYWIKENQPPGLVVGNLLDNLPYKQYFISPGYHFVLQKESEEFFSLKPGSSMLTTSKLIDLESLCGSSDCYNGTK----EFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSL---QETSTYFHFSVSKDGK---PILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKD--KTSRLQFIIVPTINVEIAKTFAI-SDQGIIYLIKHLDYETAPKYEIPVRVTD---GEFSSNGRVEVVIIDVNDCAPQFTLNPENLV--------ISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSV-IICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKY-FISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMV 2522
+ G I Y + E QPP ++G+L + Q G+ + L+ + + TT ID E+L DC N K EF+V + Q + + I V+D+NDN P F + T ++ E + G +P A DKD N Y+L E F V++D P LI++ LD E D++ L + A + P R +++L + +VI D NDN P+F +S Y + EN + H +LQ+KA D D +++ + I+ + K I GIIY+ LD E + V D SS V + + D ND AP + LV ISE+ T + + V D+D ++ + C ++++ + +K + +D +++ R + V I+ D G N ++T ++ + V D NDNSP F+ T + V E +P +++V A+D D G N+++ Y I+D + + F+ID NSG++ LDRE +D Y+ V A D + H TATV I V+D ND P+ S +FSV EN P + +G + D D G+N + ++ P + T G++L+ +SFDRE S F L+ G + SS V I +LDENDN+P ++ P + S D + V + E D+D G N ++ +S+ + LFY++ + I L + + + + D+G P R ++ +
Sbjct: 21 AVGGILYRVHEEQPPSTLIGSLAAD----QGLPDTGHLYKLEVGAPYLRVDGKTGDIFTTEIPIDRETL---KDCRNKGKPCFLEFEVSVTDLIQNQSPRLIEGRIEVQDINDNTPQFPSPVLTLSVPENTHM-GALFSIPLATDKDTER-NGVADYTLTAGPEAVALFGLQVAEDRGEKLPQLIVLGSLDRELKDSYDLTIKAVDGGNPPRYSSAL-LRVVIADANDNAPKFEKSSYEAEVAENSPIGHSVLQVKANDSDLGPNGEIEYTLHQAID-PVPKLLRIDRSSGIIYVKGPLDREEINNLKFYVVARDKGPSPKSSKTYVSIDVTDQNDNAPAVEIRGIGLVTHSDGVANISEDMPVGTAVALVQVSDKDEGE-NAVVTCVVAGDVPFQLRPASDSSVDNKRKYFLQTTTPLDYERV---RDYRVEIVAVDSG-NPALSSTNSLKVQVTDTNDNSPIFSPTLFEVEFAEENQPGEKVVEVVASDADSGTNAELVYSIIADSSTRGLFEIDPNSGEVRARSPLDREHKDRYEFRVTAADKGVPS--HRGTATVVIKVLDRNDNDPKFMLSGYSFSVLENMPPLSPVGMVTVQDMDEGENAQVQLSVEPDVGKFVIQNGT-GTILSSISFDREKESSYTFRLKAV---DGGDPPRSSYVGVTINVLDENDNAPVVTK-PSNSSFIRLSPMAAPDSVVEVVEAE------------DIDSGSNAELVYSIA----GGNPHDLFYISPSNGEITLTKELTRKHSGLHRLVIKVSDRGKPSRHAIALVHI 773
BLAST of Protocadherin gamma vs. Ensembl Zebrafish
Match: CT030123.1 (protocadherin 1b [Source:NCBI gene;Acc:572016]) HSP 1 Score: 213.001 bits (541), Expect = 7.427e-56 Identity = 220/791 (27.81%), Postives = 374/791 (47.28%), Query Frame = 3
Query: 234 TIKYWIKENQPPGLVVGNLLDNLPYKQYFISPGYHFVLQKESEEFFSLKPGSSMLTTSKLIDLESLCGSSDCYNGTK---EFQV--VALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQ---ETSTYFHFSVSKDGK---PILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFII-VPTINVEIAKTFAI-SDQGIIYLIKHLDYETAPKYEIPVRVTDG---EFSSNGRVEVVIIDVNDCAPQFTLNPENLV--------ISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSV-IICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHT-HQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNG--SLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMV 2522
TI Y + E QPP ++G+L + Q G+ + L+ + + TT ID ESL + + G EF+V L+ + E RI I+ D NDN P F + T +I E + G +P A D+D S N Y+L E + F V++D P LI++ LD E D++ L + + P R +++L + I I D NDN P+F +S Y + EN + H +LQ+KA D D + + + + + +I + GII++ +D E + V+ D SS V + + D ND AP + LV ISE+ T + + V D+D ++ + C +E ++R +K + +D ++I + + + I+ D G N ++T ++ + V D NDN+P F+ T Y V E +P ++DV ATD D G N+++ Y I+ + + F+I+ N+G++ + LDRE+ D+YQ V A D + +R TATV + V+D ND P+ + +FSV EN P + +G + D D G+N + ++ P ++ NG ++L+ +SFDRE S +S R+ D G+ SS + I +LDENDN+P ++ + ++Y + D T+ + ES + D+D G N ++ F++ + + LF ++ +E I L + + + + KDKG+PPR+T+ ++ +
Sbjct: 50 TILYQVTEEQPPNTLIGSLASD----QGLPDTGHLYKLEVGAPYLRVDGKTGDIYTTENSIDRESLKDCRNLFEGDPCFLEFEVSITDLMKGTGPRLIEGRIEIL--DENDNTPQFSSPVLTLSIPENTH-VGALFAIPVATDRD-SGSNGIADYALTTGPEATNLFSLQVAQDSDEKLPQLIVLGNLDRELRDSYDLNIKVVDGGSPPRQSSAL-LRITITDANDNVPKFERSHYEGELPENSPVGHSVLQVKANDSDMGPNGEVTYSLHQPSSPVMRLLSIDRNTGIIFVKGSVDREEISILKFYVQAKDNGPQSKSSKALVTITVKDQNDNAPSIRIRGIGLVTHEDGVANISEDMPVGTAVALVEVSDRDEGE-NAVVTCVVAGDVPFQLRSASETGNDRKRKYFLQTTTLLDYERI---KEYRIEIVAVDSG-NPALSSTNSLKVQVTDMNDNAPVFSPTLYEVEFFEENQPGDKVLDVVATDADSGTNAELTYSITGGSVPEGLFEINPNTGEVRVMSQLDREQLDHYQFLVAAADKGVPSLR--GTATVVVKVLDRNDNDPKFMLNGYSFSVQENMPPLSPVGMVTVNDHDEGENARVQLSVEPDNGKF---MIQNGTYTILSTISFDREKES--TYSFRLKAVDGGDPPR-SSYVGITINVLDENDNAPYVTKPAN--SSYKFLDPRTS----PETHVESVEA-------EDIDIGLNSELDFNI----VGGNPHGLFRIS-SEGEITLAKEFTPKHIGLHRLVVKVKDKGTPPRQTTALVHI 800
BLAST of Protocadherin gamma vs. Ensembl Zebrafish
Match: pcdh1b (protocadherin 1b [Source:ZFIN;Acc:ZDB-GENE-091015-2]) HSP 1 Score: 213.386 bits (542), Expect = 8.935e-56 Identity = 220/791 (27.81%), Postives = 374/791 (47.28%), Query Frame = 3
Query: 234 TIKYWIKENQPPGLVVGNLLDNLPYKQYFISPGYHFVLQKESEEFFSLKPGSSMLTTSKLIDLESLCGSSDCYNGTK---EFQV--VALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQ---ETSTYFHFSVSKDGK---PILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFII-VPTINVEIAKTFAI-SDQGIIYLIKHLDYETAPKYEIPVRVTDG---EFSSNGRVEVVIIDVNDCAPQFTLNPENLV--------ISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSV-IICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHT-HQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNG--SLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMV 2522
TI Y + E QPP ++G+L + Q G+ + L+ + + TT ID ESL + + G EF+V L+ + E RI I+ D NDN P F + T +I E + G +P A D+D S N Y+L E + F V++D P LI++ LD E D++ L + + P R +++L + I I D NDN P+F +S Y + EN + H +LQ+KA D D + + + + + +I + GII++ +D E + V+ D SS V + + D ND AP + LV ISE+ T + + V D+D ++ + C +E ++R +K + +D ++I + + + I+ D G N ++T ++ + V D NDN+P F+ T Y V E +P ++DV ATD D G N+++ Y I+ + + F+I+ N+G++ + LDRE+ D+YQ V A D + +R TATV + V+D ND P+ + +FSV EN P + +G + D D G+N + ++ P ++ NG ++L+ +SFDRE S +S R+ D G+ SS + I +LDENDN+P ++ + ++Y + D T+ + ES + D+D G N ++ F++ + + LF ++ +E I L + + + + KDKG+PPR+T+ ++ +
Sbjct: 32 TILYQVTEEQPPNTLIGSLASD----QGLPDTGHLYKLEVGAPYLRVDGKTGDIYTTENSIDRESLKDCRNLFEGDPCFLEFEVSITDLMKGTGPRLIEGRIEIL--DENDNTPQFSSPVLTLSIPENTH-VGALFAIPVATDRD-SGSNGIADYALTTGPEATNLFSLQVAQDSDEKLPQLIVLGNLDRELRDSYDLNIKVVDGGSPPRQSSAL-LRITITDANDNVPKFERSHYEGELPENSPVGHSVLQVKANDSDMGPNGEVTYSLHQPSSPVMRLLSIDRNTGIIFVKGSVDREEISILKFYVQAKDNGPQSKSSKALVTITVKDQNDNAPSIRIRGIGLVTHEDGVANISEDMPVGTAVALVEVSDRDEGE-NAVVTCVVAGDVPFQLRSASETGNDRKRKYFLQTTTLLDYERI---KEYRIEIVAVDSG-NPALSSTNSLKVQVTDMNDNAPVFSPTLYEVEFFEENQPGDKVLDVVATDADSGTNAELTYSITGGSVPEGLFEINPNTGEVRVMSQLDREQLDHYQFLVAAADKGVPSLR--GTATVVVKVLDRNDNDPKFMLNGYSFSVQENMPPLSPVGMVTVNDHDEGENARVQLSVEPDNGKF---MIQNGTYTILSTISFDREKES--TYSFRLKAVDGGDPPR-SSYVGITINVLDENDNAPYVTKPAN--SSYKFLDPRTS----PETHVESVEA-------EDIDIGLNSELDFNI----VGGNPHGLFRIS-SEGEITLAKEFTPKHIGLHRLVVKVKDKGTPPRQTTALVHI 782
BLAST of Protocadherin gamma vs. Ensembl Zebrafish
Match: CT030123.1 (protocadherin 1b [Source:NCBI gene;Acc:572016]) HSP 1 Score: 212.616 bits (540), Expect = 9.053e-56 Identity = 220/791 (27.81%), Postives = 374/791 (47.28%), Query Frame = 3
Query: 234 TIKYWIKENQPPGLVVGNLLDNLPYKQYFISPGYHFVLQKESEEFFSLKPGSSMLTTSKLIDLESLCGSSDCYNGTK---EFQV--VALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQ---ETSTYFHFSVSKDGK---PILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFII-VPTINVEIAKTFAI-SDQGIIYLIKHLDYETAPKYEIPVRVTDG---EFSSNGRVEVVIIDVNDCAPQFTLNPENLV--------ISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSV-IICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHT-HQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNG--SLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMV 2522
TI Y + E QPP ++G+L + Q G+ + L+ + + TT ID ESL + + G EF+V L+ + E RI I+ D NDN P F + T +I E + G +P A D+D S N Y+L E + F V++D P LI++ LD E D++ L + + P R +++L + I I D NDN P+F +S Y + EN + H +LQ+KA D D + + + + + +I + GII++ +D E + V+ D SS V + + D ND AP + LV ISE+ T + + V D+D ++ + C +E ++R +K + +D ++I + + + I+ D G N ++T ++ + V D NDN+P F+ T Y V E +P ++DV ATD D G N+++ Y I+ + + F+I+ N+G++ + LDRE+ D+YQ V A D + +R TATV + V+D ND P+ + +FSV EN P + +G + D D G+N + ++ P ++ NG ++L+ +SFDRE S +S R+ D G+ SS + I +LDENDN+P ++ + ++Y + D T+ + ES + D+D G N ++ F++ + + LF ++ +E I L + + + + KDKG+PPR+T+ ++ +
Sbjct: 32 TILYQVTEEQPPNTLIGSLASD----QGLPDTGHLYKLEVGAPYLRVDGKTGDIYTTENSIDRESLKDCRNLFEGDPCFLEFEVSITDLMKGTGPRLIEGRIEIL--DENDNTPQFSSPVLTLSIPENTH-VGALFAIPVATDRD-SGSNGIADYALTTGPEATNLFSLQVAQDSDEKLPQLIVLGNLDRELRDSYDLNIKVVDGGSPPRQSSAL-LRITITDANDNVPKFERSHYEGELPENSPVGHSVLQVKANDSDMGPNGEVTYSLHQPSSPVMRLLSIDRNTGIIFVKGSVDREEISILKFYVQAKDNGPQSKSSKALVTITVKDQNDNAPSIRIRGIGLVTHEDGVANISEDMPVGTAVALVEVSDRDEGE-NAVVTCVVAGDVPFQLRSASETGNDRKRKYFLQTTTLLDYERI---KEYRIEIVAVDSG-NPALSSTNSLKVQVTDMNDNAPVFSPTLYEVEFFEENQPGDKVLDVVATDADSGTNAELTYSITGGSVPEGLFEINPNTGEVRVMSQLDREQLDHYQFLVAAADKGVPSLR--GTATVVVKVLDRNDNDPKFMLNGYSFSVQENMPPLSPVGMVTVNDHDEGENARVQLSVEPDNGKF---MIQNGTYTILSTISFDREKES--TYSFRLKAVDGGDPPR-SSYVGITINVLDENDNAPYVTKPAN--SSYKFLDPRTS----PETHVESVEA-------EDIDIGLNSELDFNI----VGGNPHGLFRIS-SEGEITLAKEFTPKHIGLHRLVVKVKDKGTPPRQTTALVHI 782
BLAST of Protocadherin gamma vs. Ensembl Xenopus
Match: abhd8 (Xenopus tropicalis protocadherin gamma subfamily A, 3 (pcdhga3), mRNA. [Source:RefSeq mRNA;Acc:NM_001170512]) HSP 1 Score: 214.157 bits (544), Expect = 1.863e-56 Identity = 202/668 (30.24%), Postives = 324/668 (48.50%), Query Frame = 3
Query: 231 GTIKYWIKENQPPGLVVGNLLDNLPYKQYFISPGYHFVLQKESEEFFSLKPGSSMLTTSKLIDLESLCGSSDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSK--DGK--PILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTS--RLQFIIVPTINVEIAKTFAISDQ-GIIYLIKHLDYETAPKYEIPVRVTDG---EFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTH-----QQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRIN------ESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFEL-LTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDEN 2168
G ++Y + E PG VGN+ +L K +S + + S ++FS+ + LT ++ ID ESLCGSS + V +V+ D +Q R+ + V D+NDN P F A T I E++ PG L A D D N YSL + YF SV K DG P L++ K LD E I H LIL A + P R S I +V+ D+NDN P+F ++ ++ I ENV LN +LQL ATD+D+ + +++ I + FAI+ + G+I I +DYE + +EIPV+ D E + V V + DVND +P+ + + E+T+ T++G V DQDS +G E PN +F +++ ++ ++ +DR++++ + + +D+G + + L + D NDN P FT V+EN +P L VSA D D+G N+ + Y I+++ + ID SG I +S D E Q+ V A D + ++ S T++I ++D ND P I E + ++ P G ++ K+ A D D G N + +I + S F + G + T +F +E+ + ++ L ++V D G+ S + + + ILDE
Sbjct: 28 GQLRYSVVEESDPGTFVGNVAQDLGLKISDVSRRKLRMGSEGSRKYFSVNWENGALTVNEKIDRESLCGSSTICS-----LPVEVVIEDP--LQLHRLVVEVLDINDNSPVFSTAQRTIKILELLANPGTRYPLESAHDLDAG-ANGIKQYSLN-PNLYFSLSVKKRSDGTLIPELLLEKTLDREEIGEHHLILTAVDGGSPPRSGTSQ-IHVVVLDLNDNAPKFEKNSFKCTIHENVPLNTILLQLNATDRDEGANGEIEYSFDDHTPASIQRLFAINQKTGVISTIGPIDYEESSSFEIPVKARDKGVPELEGHCTVYVEVEDVNDNSPEILITSLMKAVPEDTVVGTVVGLFNVKDQDSG--QNGQVRLELPPNIPFKFKSFDDH------YSLVTDRTLDREKVS--QYIIELSASDLG-DPPLHTQHKIILNISDVNDNCPTFTHATVSASVQENNEPGQLLFQVSAFDPDEGENANLVYSIAENAATSTPISSFVYIDSKSGNIYAQRSFDYEHVQVLQIPVKAEDSGVPKM--FSNTTIYIFILDTNDNPPAIFHPDLSLEDPVERKIPKSSPAGYLVTKVTAVDADSGYNSWLSYNIIDATDSSLFHVSAQTGEIRTTRAF-QETDTPEQY-LTVSVSDHGKPPL--SASVILLVILDEG 668 HSP 2 Score: 123.25 bits (308), Expect = 9.452e-28 Identity = 129/501 (25.75%), Postives = 234/501 (46.71%), Query Frame = 3
Query: 1110 IPVRVTDGEFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNI-VVYDQDSAY-VDSGIE-CREGSPNDAMRFDIT-ENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTH---QQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSP---IFPFTFSDLDDGPNGQVAFSM-KIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADI---PPRLIDQNISM 2570
+PV V + R+ V ++D+ND +P F+ + I E LL N Y +SA+ +D+G ++ S N + F ++ + S+ T + L + +DR++I G+ ++ D G R + + + NDN+P+F + + EN+ L+ ++ATD+D+G N +I+Y DHT Q+ F I++ +G I I +D E+ +++ V A D + E+ TV++ V DVND +P I + +V E+ +GTV+G D D GQNG+ L P+ + + SL+T + DRE +SQ + + ++ D+G+ L ++ + + I D NDN P T +++ S E+ N P +F + D D+G N + +S+ + S + Y++ I +RS+ + + A+D G P ++ I + D PP + ++S+
Sbjct: 103 LPVEVVIEDPLQLHRLVVEVLDINDNSPVFSTAQRTIKILE------LLANPGTRYPLESAHDLDAGANGIKQYSLNPNLYFSLSVKKRSDGTLIPELLLEKTLDREEI-GEHHL-ILTAVDGGSPPRSGTSQIHVVVLDL-NDNAPKFEKNSFKCTIHENVPLNTILLQLNATDRDEGANGEIEYSFDDHTPASIQRLFAINQKTGVISTIGPIDYEESSSFEIPVKARDKGVPELE--GHCTVYVEVEDVNDNSPEILITSLMKAVPEDTVVGTVVGLFNVKDQDSGQNGQVRLELPPNIPFKFKSFDDHYSLVTDRTLDREKVSQ--YIIELSASDLGDP-PLHTQHKIILNISDVNDNCPTF-----------------THATVSASVQEN-NEPGQLLFQVSAFDPDEGENANLVYSIAENAATSTPISSFVYIDSKSGNIYAQRSFDYEHVQVLQIPVKAEDSGVPKMFSNTTIYIFILDTNDNPPAIFHPDLSL 571 HSP 3 Score: 103.99 bits (258), Expect = 9.155e-22 Identity = 143/600 (23.83%), Postives = 259/600 (43.17%), Query Frame = 3
Query: 837 ASLPITIVIDD-------------INDNEPRFSQSIYRVPILE---NVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAISDQGII---YLIKHLDYETAPKYEIPVRVTDG---EFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQE---------IDRDQINGDRRFSVII-CNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAF------SHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMV 2522
SLP+ +VI+D INDN P FS + + ILE N + + D Q+ + P + ++ SD +I L K LD E ++ + + DG S ++ VV++D+ND AP+F N I EN T+L + D+D EG+ N + + ++ +++ +NQ+ ID ++ F + + D G+ TV + V D NDNSP+ +T + V E+ + + D+D G N Q++ + + ++ D++ ++ ++LDREK Y + + A+DL + HT + +++ DVND P + + SV EN G ++ ++ A D D G+N ++++ +A S + +G++ + SFD E + ++ ++ D G + S T + I ILD NDN P I F + D + K+ + T D D G N +++++ I + LF+++ I+ R++Q++D +T+ D G PP S +++V
Sbjct: 101 CSLPVEVVIEDPLQLHRLVVEVLDINDNSPVFSTAQRTIKILELLANPGTRYPLESAHDLDAGANGIKQYSLNPNLYFSLSVK-KRSDGTLIPELLLEKTLDREEIGEHHLILTAVDGGSPPRSGTSQIHVVVLDLNDNAPKFEKNSFKCTIHENVPLNTILLQLNATDRD-----------EGA-NGEIEYSFDDHTPASIQRL-FAINQKTGVISTIGPIDYEE---SSSFEIPVKARDKGVP-ELEGHCTVYVEVEDVNDNSPEILITSLMKAVPEDTVVGTVVGLFNVKDQDSGQNGQVRLELPPNIPFKFKSFDDHY-SLVTDRTLDREKVSQYIIELSASDLG-DPPLHTQHKII-LNISDVNDNCPTFTHATVSASVQENNEPGQLLFQVSAFDPDEGENANLVYSIAENAATSTPISSFVYIDSKSGNIYAQRSFDYEHVQVLQIPVK--AEDSGVP-KMFSNTTIYIFILDTNDNPPAI-----FHPDLSLED----PVERKIPKSSPAGYLVTKVTAVDADSGYNSWLSYNI----IDATDSSLFHVSAQTGEIRTTRAFQETDTPEQYLTVSVSDHGKPPLSASVILLV 663
BLAST of Protocadherin gamma vs. Ensembl Xenopus
Match: ENSXETT00000027070.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:3:19099783:19110965:-1 gene:ENSXETG00000013163.1 transcript:ENSXETT00000027070.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 210.305 bits (534), Expect = 3.361e-55 Identity = 220/808 (27.23%), Postives = 377/808 (46.66%), Query Frame = 3
Query: 237 IKYWIKENQPPGLVVGNLLDNLPYKQYFISPGYHFVLQKESEEFFSLKPGSSMLTTSKLIDLESLCG-SSDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQI-SYSLQETSTYFHF--SVSKDGK--PILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFI-IVPTINVEIAKTFAIS-DQGIIYLIKHLDYETAPKYEIPVRVTD-GEFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYF-----ISDHTHQQYFKIDENSGKIIGIQSLDREK-QDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPS-----AFSHYFELLT-NGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSK----VIMVQFADIPPRLIDQNISMGSFSN 2585
++Y I E Q G V+GN+ ++L +S ++ + +++ ++ + L + ID E+LCG +C+ + A++ F IN+ ++DVNDN P F + + +I E+ G L A D DL NN I SY L + YF V+ DG+ P L++ K LD E ++ LIL A++ PS+ SL I IV+ DINDN P F++ YRV + ENV + ++ L ATD D+ S + + I + FAI+ + G + + LDYE A YE+ V D G S ++ + + DVND AP + + +I E++ T++ + + D DS + G ++++ F + ++ K + + ++DR++ + +++ I + + + T + T+ L + D NDN+P F DYV ++EN V ATD D N ++ Y I D Y I+ SG + +S D EK +++Y + A D ++ T+ T+ + + DVND AP + + EN P G+ ++ ATD DI +NGK ++ ++ S Y + T +G L + SFD ESL + F +++ +D G S+ V I I D+NDN+PKI Y D+ + + + D D G N +++ + + + + I++ R Q++D R + ++ KD G P ++ V+ F + P + +Q+I S SN
Sbjct: 34 LQYSIYEEQRLGYVIGNIANDLGVSAEELSSRKFHIVSRSKKQYLNVHLENGDLYVADRIDREALCGMQQNCF-----LNIEAVMESPLHF---YTINVEIQDVNDNSPSFSKSIFEISISELAV-VGTHFALGSAKDPDLG--NNSIQSYKLS-ANDYFGMLEKVNTDGRKYPELVLEKTLDREKKNSSVLILSAFDGGTPSKTGTSL-IRIVVTDINDNYPLFNKDTYRVTVSENVPIGFLVIDLHATDADEGSNAEITYLFNDIPENAQEVFAINPENGSVQITGKLDYEVATNYEMTVEAKDGGGLVSYCKLLIQVSDVNDNAPDILITSFSDIIPEDSRVGTVIALVNLDDLDSGENGEVV----GQISESLPFHLISSSGNYYKLVT---SMDLDREKTS---EYNITIKAEDKGSPQLTNSKTIRLILTDVNDNAPVFDKMDYVAYIQENNPSGNSFYRVHATDPDINENGKVVYMILTDIIEDIPISSYVSINTVSGVLYAQRSFDYEKLREFY---IQAEDKGSPQL--TNNKTIRLILTDVNDNAPVFEKMDYVAYIQENNPSGSSFFRVHATDSDINENGKVVYMILTDIIEDMPLSSYISINTVSGVLYAQRSFDYESLRE--FYIQVMAKDSGSPSR-SANATVKICITDQNDNAPKI--------LYPSQDSEAASVFEFIPHFSTKGYLVTKVVAVDADSGHNAWLSYHL----LQVPDPSFLIIGQNTGEIRITRDLQETDALRQRIVVMVKDNGYPMLSSTVTLNLVVAENFQQVLPEITNQHIDTESSSN 798
BLAST of Protocadherin gamma vs. Ensembl Xenopus
Match: pcdh17 (protocadherin 17 [Source:Xenbase;Acc:XB-GENE-480220]) HSP 1 Score: 200.675 bits (509), Expect = 1.301e-51 Identity = 220/803 (27.40%), Postives = 360/803 (44.83%), Query Frame = 3
Query: 237 IKYWIKENQPPGLVVGNLLDNLPYKQYFISPGYHFVLQKESEEFFSLKPGSSML----------TTSKLIDLESLCGSSDCYNGTKEFQVVALVMRD--KQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSL---QETSTYFHFSVSKD---GKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTF-AISD-----------QGIIYLIKHLDYETAPKYEIPVRVTD-GEFSSNGRVEVVII--DVNDCAPQFTLNPENLV--------ISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSV-IICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKY-FISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVI 2516
+ Y + E QPP +++G+L + Y +S+ + L+ G L TT ID ESL + G K F + M D + L I + D+NDN P F + T +I E G +P A D+D S +N SY L E F V++D +P LI++ LD E D++ L + + P+R +++L + I I D NDN P+F + Y + EN + H +LQ+KA D D+ +N EI +F SD G+I + +D E + V D G R +V I D ND P + LV ISE+ +T + + V D D V++ + C +++ S+ KK + +D + + + +++ I+ D G N ++T ++ + V D NDN+P F+ + V EN +++VSATD D G NSQ+ Y + D + + F I+ +SG+I LDRE++++Y VVA D I ++ TA+V I V+D ND P+ + FSV EN P + +G + D D G+N ++ P + + T G++L+ +SFDRE Q ++ R+ D G+ SS V I +LDENDN+P I V+P I +Y Y ++ +P+ D+D G N ++ +S+ S +LF ++ + L+++ + + + DKG P R + ++
Sbjct: 69 VAYRVPEEQPPNILIGSLASDYGYP--------------DSKHLYKLELGHPYLRVDGKTGDIYTTETSIDRESLRECQNLEPGEKCFLEFEVSMTDLMSPVPRLLDGQIEIMDINDNTPNFNSPVITLSIPENT-NIGMLFPIPAATDRD-SGVNGVSSYELIVGPEAQDLFGLQVAEDQDEKQPQLIVMGMLDREQRDSYDLTIKVQDGGTPARASSAL-LRISILDTNDNAPKFEKMAYEAELPENSPMGHSVLQVKANDSDQ----------GVNAEIDYSFHQASDTVRRLLHLDRSTGLITVQGPIDREDVGTLKFSVVAKDKGANPKTARTQVTITIRDTNDNKPVIEIRGFGLVTHQGGVANISEDVPVETPVALVQVSDIDEG-VNAAVTCVVAGDVPFQLKQVSDTGSDSKKKYFLQTTTALDYESV---KEYTIEIVAVDSG-NPPLSSTNSLKVQVTDVNDNAPVFSQSLMEVVFPENNDINDLVMEVSATDADSGPNSQLHYSILPDPSARGIFSINPDSGQIRVNTVLDREQREHYDFHVVAVDKGIPSLK--GTASVVITVLDRNDNDPKFMLNGYNFSVMENMPRLSPVGMVTVIDADKGENAHIHLSVEPESGEFVIQNGT-GTILSSISFDRE--HQSTYTFRLKAVDGGDPPR-SSYVGVTINVLDENDNAPVI-VVPSNI-SYKY-----------LTPQTHPGTPVNWVRAEDMDTGINAELDYSIA----SGNPFELFQISHNNGEVTLEKAIIRKHYGLHRLVVKVTDKGKPSRHGTALV 816 HSP 2 Score: 115.931 bits (289), Expect = 1.921e-25 Identity = 147/593 (24.79%), Postives = 246/593 (41.48%), Query Frame = 3
Query: 855 IVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDK----TSRLQFIIVPTINVEIAKTFAI-------SDQGIIYLIKHLDYETAPKYEIPVRVTDG---EFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDY--------VVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDE---NSGKIIGIQ---SLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLI--PSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTE---KAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFAD 2534
I I DINDN P F+ + + I EN + ATD+D S + I+ P E F + Q + ++ LD E Y++ ++V DG +S+ + + I+D ND AP+F + EN+ + + D D V++ I+ +D +R + + +R+ + I + IDR+ + G +FSV+ D G N + T NDN P + + V + E++ + P+ V +D D+GVN+ + ++ Q ++ + +S K +Q +LD E Y + +VA D + +ST ++ + V DVND AP ++SL EN I ++ ++ ATD D G N + ++++ PSA + +G + DRE F + + I L +V I +LD NDN PK + YN+S V + SP+ T D D G N + S + +S + N T +I R Q + + L A D G PPR + + + D
Sbjct: 164 IEIMDINDNTPNFNSPVITLSIPENTNIGMLFPIPAATDRDSGVNGVSSYELIVGP----EAQDLFGLQVAEDQDEKQPQLIVMGMLDREQRDSYDLTIKVQDGGTPARASSALLRISILDTNDNAPKFEKMAYEAELPENSPMGHSVLQVKANDSDQG-VNAEIDYSFHQASDTVRRLL---HLDRSTGL-ITVQGPIDREDV-GTLKFSVV-AKDKGANPKTARTQVTITIRDT-NDNKPVIEIRGFGLVTHQGGVANISEDVPVETPVALVQVSDIDEGVNAAVTCVVAGDVPFQLKQVSDTGSDSKKKYFLQTTTALDYESVKEYTIEIVAVDSGNPPL--SSTNSLKVQVTDVNDNAPVFSQSLMEVVFPENNDINDLVMEVSATDADSGPNSQLHYSILPDPSARGIFSINPDSGQIRVNTVLDREQREHYDFHVVAVDKGIPS---LKGTASVVITVLDRNDNDPKF-----MLNGYNFS----------VMENMPRLSPVGMVTVIDADKGENAHIHLS-----VEPESGEFVIQNGTGTILSSISFDREHQST----YTFRLKAVDGGDPPRSSYVGVTINVLD 715
BLAST of Protocadherin gamma vs. Ensembl Xenopus
Match: pcdh17 (protocadherin 17 [Source:Xenbase;Acc:XB-GENE-480220]) HSP 1 Score: 199.904 bits (507), Expect = 1.334e-51 Identity = 220/803 (27.40%), Postives = 360/803 (44.83%), Query Frame = 3
Query: 237 IKYWIKENQPPGLVVGNLLDNLPYKQYFISPGYHFVLQKESEEFFSLKPGSSML----------TTSKLIDLESLCGSSDCYNGTKEFQVVALVMRD--KQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSL---QETSTYFHFSVSKD---GKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTF-AISD-----------QGIIYLIKHLDYETAPKYEIPVRVTD-GEFSSNGRVEVVII--DVNDCAPQFTLNPENLV--------ISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSV-IICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKY-FISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVI 2516
+ Y + E QPP +++G+L + Y +S+ + L+ G L TT ID ESL + G K F + M D + L I + D+NDN P F + T +I E G +P A D+D S +N SY L E F V++D +P LI++ LD E D++ L + + P+R +++L + I I D NDN P+F + Y + EN + H +LQ+KA D D+ +N EI +F SD G+I + +D E + V D G R +V I D ND P + LV ISE+ +T + + V D D V++ + C +++ S+ KK + +D + + + +++ I+ D G N ++T ++ + V D NDN+P F+ + V EN +++VSATD D G NSQ+ Y + D + + F I+ +SG+I LDRE++++Y VVA D I ++ TA+V I V+D ND P+ + FSV EN P + +G + D D G+N ++ P + + T G++L+ +SFDRE Q ++ R+ D G+ SS V I +LDENDN+P I V+P I +Y Y ++ +P+ D+D G N ++ +S+ S +LF ++ + L+++ + + + DKG P R + ++
Sbjct: 69 VAYRVPEEQPPNILIGSLASDYGYP--------------DSKHLYKLELGHPYLRVDGKTGDIYTTETSIDRESLRECQNLEPGEKCFLEFEVSMTDLMSPVPRLLDGQIEIMDINDNTPNFNSPVITLSIPENT-NIGMLFPIPAATDRD-SGVNGVSSYELIVGPEAQDLFGLQVAEDQDEKQPQLIVMGMLDREQRDSYDLTIKVQDGGTPARASSAL-LRISILDTNDNAPKFEKMAYEAELPENSPMGHSVLQVKANDSDQ----------GVNAEIDYSFHQASDTVRRLLHLDRSTGLITVQGPIDREDVGTLKFSVVAKDKGANPKTARTQVTITIRDTNDNKPVIEIRGFGLVTHQGGVANISEDVPVETPVALVQVSDIDEG-VNAAVTCVVAGDVPFQLKQVSDTGSDSKKKYFLQTTTALDYESV---KEYTIEIVAVDSG-NPPLSSTNSLKVQVTDVNDNAPVFSQSLMEVVFPENNDINDLVMEVSATDADSGPNSQLHYSILPDPSARGIFSINPDSGQIRVNTVLDREQREHYDFHVVAVDKGIPSLK--GTASVVITVLDRNDNDPKFMLNGYNFSVMENMPRLSPVGMVTVIDADKGENAHIHLSVEPESGEFVIQNGT-GTILSSISFDRE--HQSTYTFRLKAVDGGDPPR-SSYVGVTINVLDENDNAPVI-VVPSNI-SYKY-----------LTPQTHPGTPVNWVRAEDMDTGINAELDYSIA----SGNPFELFQISHNNGEVTLEKAIIRKHYGLHRLVVKVTDKGKPSRHGTALV 816 HSP 2 Score: 115.931 bits (289), Expect = 2.134e-25 Identity = 147/593 (24.79%), Postives = 246/593 (41.48%), Query Frame = 3
Query: 855 IVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDK----TSRLQFIIVPTINVEIAKTFAI-------SDQGIIYLIKHLDYETAPKYEIPVRVTDG---EFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDY--------VVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDE---NSGKIIGIQ---SLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLI--PSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTE---KAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFAD 2534
I I DINDN P F+ + + I EN + ATD+D S + I+ P E F + Q + ++ LD E Y++ ++V DG +S+ + + I+D ND AP+F + EN+ + + D D V++ I+ +D +R + + +R+ + I + IDR+ + G +FSV+ D G N + T NDN P + + V + E++ + P+ V +D D+GVN+ + ++ Q ++ + +S K +Q +LD E Y + +VA D + +ST ++ + V DVND AP ++SL EN I ++ ++ ATD D G N + ++++ PSA + +G + DRE F + + I L +V I +LD NDN PK + YN+S V + SP+ T D D G N + S + +S + N T +I R Q + + L A D G PPR + + + D
Sbjct: 164 IEIMDINDNTPNFNSPVITLSIPENTNIGMLFPIPAATDRDSGVNGVSSYELIVGP----EAQDLFGLQVAEDQDEKQPQLIVMGMLDREQRDSYDLTIKVQDGGTPARASSALLRISILDTNDNAPKFEKMAYEAELPENSPMGHSVLQVKANDSDQG-VNAEIDYSFHQASDTVRRLL---HLDRSTGL-ITVQGPIDREDV-GTLKFSVV-AKDKGANPKTARTQVTITIRDT-NDNKPVIEIRGFGLVTHQGGVANISEDVPVETPVALVQVSDIDEGVNAAVTCVVAGDVPFQLKQVSDTGSDSKKKYFLQTTTALDYESVKEYTIEIVAVDSGNPPL--SSTNSLKVQVTDVNDNAPVFSQSLMEVVFPENNDINDLVMEVSATDADSGPNSQLHYSILPDPSARGIFSINPDSGQIRVNTVLDREQREHYDFHVVAVDKGIPS---LKGTASVVITVLDRNDNDPKF-----MLNGYNFS----------VMENMPRLSPVGMVTVIDADKGENAHIHLS-----VEPESGEFVIQNGTGTILSSISFDREHQST----YTFRLKAVDGGDPPRSSYVGVTINVLD 715
BLAST of Protocadherin gamma vs. Ensembl Xenopus
Match: pcdh17 (protocadherin 17 [Source:Xenbase;Acc:XB-GENE-480220]) HSP 1 Score: 200.29 bits (508), Expect = 1.740e-51 Identity = 220/803 (27.40%), Postives = 360/803 (44.83%), Query Frame = 3
Query: 237 IKYWIKENQPPGLVVGNLLDNLPYKQYFISPGYHFVLQKESEEFFSLKPGSSML----------TTSKLIDLESLCGSSDCYNGTKEFQVVALVMRD--KQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSL---QETSTYFHFSVSKD---GKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTF-AISD-----------QGIIYLIKHLDYETAPKYEIPVRVTD-GEFSSNGRVEVVII--DVNDCAPQFTLNPENLV--------ISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSV-IICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKY-FISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVI 2516
+ Y + E QPP +++G+L + Y +S+ + L+ G L TT ID ESL + G K F + M D + L I + D+NDN P F + T +I E G +P A D+D S +N SY L E F V++D +P LI++ LD E D++ L + + P+R +++L + I I D NDN P+F + Y + EN + H +LQ+KA D D+ +N EI +F SD G+I + +D E + V D G R +V I D ND P + LV ISE+ +T + + V D D V++ + C +++ S+ KK + +D + + + +++ I+ D G N ++T ++ + V D NDN+P F+ + V EN +++VSATD D G NSQ+ Y + D + + F I+ +SG+I LDRE++++Y VVA D I ++ TA+V I V+D ND P+ + FSV EN P + +G + D D G+N ++ P + + T G++L+ +SFDRE Q ++ R+ D G+ SS V I +LDENDN+P I V+P I +Y Y ++ +P+ D+D G N ++ +S+ S +LF ++ + L+++ + + + DKG P R + ++
Sbjct: 61 VAYRVPEEQPPNILIGSLASDYGYP--------------DSKHLYKLELGHPYLRVDGKTGDIYTTETSIDRESLRECQNLEPGEKCFLEFEVSMTDLMSPVPRLLDGQIEIMDINDNTPNFNSPVITLSIPENT-NIGMLFPIPAATDRD-SGVNGVSSYELIVGPEAQDLFGLQVAEDQDEKQPQLIVMGMLDREQRDSYDLTIKVQDGGTPARASSAL-LRISILDTNDNAPKFEKMAYEAELPENSPMGHSVLQVKANDSDQ----------GVNAEIDYSFHQASDTVRRLLHLDRSTGLITVQGPIDREDVGTLKFSVVAKDKGANPKTARTQVTITIRDTNDNKPVIEIRGFGLVTHQGGVANISEDVPVETPVALVQVSDIDEG-VNAAVTCVVAGDVPFQLKQVSDTGSDSKKKYFLQTTTALDYESV---KEYTIEIVAVDSG-NPPLSSTNSLKVQVTDVNDNAPVFSQSLMEVVFPENNDINDLVMEVSATDADSGPNSQLHYSILPDPSARGIFSINPDSGQIRVNTVLDREQREHYDFHVVAVDKGIPSLK--GTASVVITVLDRNDNDPKFMLNGYNFSVMENMPRLSPVGMVTVIDADKGENAHIHLSVEPESGEFVIQNGT-GTILSSISFDRE--HQSTYTFRLKAVDGGDPPR-SSYVGVTINVLDENDNAPVI-VVPSNI-SYKY-----------LTPQTHPGTPVNWVRAEDMDTGINAELDYSIA----SGNPFELFQISHNNGEVTLEKAIIRKHYGLHRLVVKVTDKGKPSRHGTALV 808 HSP 2 Score: 116.316 bits (290), Expect = 1.861e-25 Identity = 147/593 (24.79%), Postives = 246/593 (41.48%), Query Frame = 3
Query: 855 IVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDK----TSRLQFIIVPTINVEIAKTFAI-------SDQGIIYLIKHLDYETAPKYEIPVRVTDG---EFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDY--------VVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDE---NSGKIIGIQ---SLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLI--PSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTE---KAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFAD 2534
I I DINDN P F+ + + I EN + ATD+D S + I+ P E F + Q + ++ LD E Y++ ++V DG +S+ + + I+D ND AP+F + EN+ + + D D V++ I+ +D +R + + +R+ + I + IDR+ + G +FSV+ D G N + T NDN P + + V + E++ + P+ V +D D+GVN+ + ++ Q ++ + +S K +Q +LD E Y + +VA D + +ST ++ + V DVND AP ++SL EN I ++ ++ ATD D G N + ++++ PSA + +G + DRE F + + I L +V I +LD NDN PK + YN+S V + SP+ T D D G N + S + +S + N T +I R Q + + L A D G PPR + + + D
Sbjct: 156 IEIMDINDNTPNFNSPVITLSIPENTNIGMLFPIPAATDRDSGVNGVSSYELIVGP----EAQDLFGLQVAEDQDEKQPQLIVMGMLDREQRDSYDLTIKVQDGGTPARASSALLRISILDTNDNAPKFEKMAYEAELPENSPMGHSVLQVKANDSDQG-VNAEIDYSFHQASDTVRRLL---HLDRSTGL-ITVQGPIDREDV-GTLKFSVV-AKDKGANPKTARTQVTITIRDT-NDNKPVIEIRGFGLVTHQGGVANISEDVPVETPVALVQVSDIDEGVNAAVTCVVAGDVPFQLKQVSDTGSDSKKKYFLQTTTALDYESVKEYTIEIVAVDSGNPPL--SSTNSLKVQVTDVNDNAPVFSQSLMEVVFPENNDINDLVMEVSATDADSGPNSQLHYSILPDPSARGIFSINPDSGQIRVNTVLDREQREHYDFHVVAVDKGIPS---LKGTASVVITVLDRNDNDPKF-----MLNGYNFS----------VMENMPRLSPVGMVTVIDADKGENAHIHLS-----VEPESGEFVIQNGTGTILSSISFDREHQST----YTFRLKAVDGGDPPRSSYVGVTINVLD 707
BLAST of Protocadherin gamma vs. Ensembl Mouse
Match: Pcdh11x (protocadherin 11 X-linked [Source:MGI Symbol;Acc:MGI:2442849]) HSP 1 Score: 206.068 bits (523), Expect = 1.786e-53 Identity = 210/776 (27.06%), Postives = 351/776 (45.23%), Query Frame = 3
Query: 243 YWIKENQPPGLVVGNLLDNL-----PYKQYFISPGYHFVLQKESEEFFSLKPGSS-MLTTSKLIDLESLCGS----SDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSV----SKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKD--KTSRLQFIIVPTINVEIAKTFAI-SDQGIIYLIKHLDYETAPKYEIPVRVTDGEFSSNGRVEVV--IIDVNDCAP----QFTLNPEN--LVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSV-IICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSP 2492
Y ++E P +++G+LL +L P K + V + ++ G+ + TT ID E LC + C+ ++V V+ D+ F + ++I ++ED+NDN P F +I E LP A D D+ IN +Y L ++ F V D P LI+ KELD E DT+ + + + +P R + ++ + + + D NDN P F + V I EN + + QL ATD D + +R+ F ++ + F + + G+I + + LD E +P +++ V TDG S+ R V+ + D+ND P ++ +NP N +++SEN T + I V D+DS + + + C + + F + R N +L + R +++ ++ D G + + + V D NDN+P FT + + V EN P L +SATD D G N++I Y + + F +D+ +G + ++ LDREKQ+ Y TV+A D I + S ATV + V+D ND +P + F V E+ P +G + TD D G+N +++ + +G + +SFDRE Q ++ + D G + SS V I ++D NDN P I + P ++ + +T ++ +F D D G N +V +S+ + + LF + T I LK SD V + A D G P
Sbjct: 28 YTVREEMPENVLIGDLLKDLNLSLIPDKSLTTPMQFKLVYKTGDVPLIRIEEGTGEIFTTGARIDREKLCAGIVLDARCF-----YEVEVAVLPDEIF-RLVKIRFLIEDINDNAPLFPTTVINISIPEN-SAINSRYSLPAAIDPDIG-INGVQNYQLIKSQNIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAI-LQVSVADTNDNHPIFIEKEIEVSIPENAPIGSSVTQLHATDADIGENARIHFYFSNLVSNIAKRLFHLNTTTGLITVKEPLDREESPSHKLLVLATDGG-STPARATVLVNVTDINDNVPSIDIRYIVNPTNGTVLLSENAPLNTKIALITVMDKDSEH-NGRVTCFT---DHEVPFRL------RPVFSNQFLLETAAFLDFESTREYAIKLLAADAG-KPPLNQSSMLLIKVKDENDNAPVFTQSFISLSVPENNSPGAQLTKISATDADSGQNAEISYMLGFDAPPE-FNLDQRTGILTAVKKLDREKQEKYYFTVLAQDNGIPPL--MSNATVFVTVLDQNDNSPIFTHNEYNFYVPESLPKHGTVGLITVTDPDYGENSAVTLSIL-DVNDQFTIDPQSGVIRPNISFDRE--RQESYTFYVKAED-GGRVSRSSTARVTINVVDVNDNKP-IFIDPPSNYSFEWVLPSTNPGTV-----------VFKVVAIDDDIGMNAEVLYSI----VGGNTKGLFMIEQTSGNITLKEKCMVSDLGLHRVIVKANDLGQP 759 HSP 2 Score: 94.7449 bits (234), Expect = 5.428e-19 Identity = 101/354 (28.53%), Postives = 159/354 (44.92%), Query Frame = 3
Query: 1524 NDNSPQFTLTDYVVRVKEN--LKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKID-------ENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIF---TLIPSAFSHYFELLTNGSLLT-KVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQV-AFSMKIYPISLK---SNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFAD 2534
NDN+P F T + + EN + +Y L +A D D G+N Y + Q F +D + ++I + LDRE++D Y + V D + +STA + + V D ND P E S+ EN PIG+ + +L ATD DIG+N + F L+ + F L T L+T K DRE K L + D G ++ V + + D NDN P I + +I N T+ ++ +S+ N+ I T D D NG+V F+ P L+ SNQ +L T + + + + + + L+A D G PP S +++++ D
Sbjct: 133 NDNAPLFPTTVINISIPENSAINSRYSL--PAAIDPDIGINGVQNYQLIKS--QNIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQ--RSSTAILQVSVADTNDNHPIFIEKEIEVSIPENAPIGSSVTQLHATDADIGENARIHFYFSNLVSNIAKRLFHLNTTTGLITVKEPLDREESPSHK--LLVLATDGGST---PARATVLVNVTDINDNVPSIDI--RYIV-------NPTNGTVLLSENAPLNTKIALITVMDKDSEHNGRVTCFTDHEVPFRLRPVFSNQ--FLLETAAFLDFESTRE------YAIKLLAADAGKPPLNQSSMLLIKVKD 458 HSP 3 Score: 91.2781 bits (225), Expect = 5.564e-18 Identity = 144/586 (24.57%), Postives = 236/586 (40.27%), Query Frame = 3
Query: 849 ITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKD----KTSRLQFIIVPTI-NVEIAKTFAISDQGIIYLIKHLDYETAPKYEIPVRVTDGEF---SSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRF---DITENNSERTKKIN-----IYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTL------TDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKV-SFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADI 2537
I +I+DINDN P F ++ + I EN +N + A D D Q I I +++ +T + + K LD E Y + V+V DG F SS ++V + D ND P F + I EN + + + D D N + F ++ N ++R +N I + + +DR++ + +++ D G A TV + V D NDN P + T+ V + EN + ++ DKD N ++ F + + N + LD E Y + ++A D + +S + I V D ND AP +S + SV EN G + K+ ATD D GQN + + L A F L +LT V DRE Q K+ + +D G +S+ T V + +LD+NDNSP I +N + + V ++ + + T +D D G N V S+ L N F ++ I+ S+ + + + A+D G R ++ + + D+
Sbjct: 125 IRFLIEDINDNAPLFPTTVINISIPENSAINSRYSLPAAIDPDIGINGVQNYQLIKSQNIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQVSVADTNDNHPIFIEKEIEVSIPENAPIGSSVTQLHATDADIGE------------NARIHFYFSNLVSNIAKRLFHLNTTTGLITVKEPLDREESPSHKL--LVLATDGG---STPARATVLVNVTDINDNVPSIDIRYIVNPTNGTVLLSENAPLNTKIALITVMDKDSEHNGRVTCFTDHEVPFRLRPVFSNQFLLETAAFLDFESTREYAIKLLAADAGKPPLNQSSM--LLIKVKDENDNAPVFTQSFISLSVPENNSPGAQLTKISATDADSGQNAEISYMLGFDAPPE-FNLDQRTGILTAVKKLDRE--KQEKYYFTVLAQDNGIPPLMSNAT-VFVTVLDQNDNSP--------IFTHN-------EYNFYVPESLPKHGTVGLITVTDPDYGENSAVTLSI------LDVNDQFTIDPQSGVIRPNISFDRERQESYTFYVKAEDGGRVSRSSTARVTINVVDV 666 HSP 4 Score: 53.5286 bits (127), Expect = 2.150e-6 Identity = 72/302 (23.84%), Postives = 124/302 (41.06%), Query Frame = 3
Query: 1689 KIDENSGKIIGIQS-LDREK---------QDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGS------LLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSN---QLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADI 2537
+I+E +G+I + +DREK + +Y+V V I + + + D+ND AP ++ S+ EN I + A D DIG NG + LI S +++ L+ + DRE + + +++ V D G SS + + + D NDN P FI + +++ + S + +D D G N ++ F Y +L SN +LF+LN T I +K + + + ++A D GS P + ++V DI
Sbjct: 76 RIEEGTGEIFTTGARIDREKLCAGIVLDARCFYEVEVAVLPDEIFRL-----VKIRFLIEDINDNAPLFPTTVINISIPENSAINSRYSLPAAIDPDIGINGVQNYQLIKSQNIFGLDVIETPEGDKMPQLIVQKELDRE--EKDTYVMKVKVED-GGFPQRSSTAILQVSVADTNDNHPI------FIEK---------EIEVSIPENAPIGSSVTQLHATDADIGENARIHF----YFSNLVSNIAKRLFHLNTTTGLITVKEPLDREESPSHKLLVLATDGGSTPARAT--VLVNVTDI 348
BLAST of Protocadherin gamma vs. Ensembl Mouse
Match: Pcdh11x (protocadherin 11 X-linked [Source:MGI Symbol;Acc:MGI:2442849]) HSP 1 Score: 206.453 bits (524), Expect = 1.937e-53 Identity = 211/777 (27.16%), Postives = 353/777 (45.43%), Query Frame = 3
Query: 243 YWIKENQPPGLVVGNLLDNL-----PYKQYFISPGYHFVLQKESEEFFSLKPGSS-MLTTSKLIDLESLCGS----SDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSV----SKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKD--KTSRLQFIIVPTINVEIAKTFAI-SDQGIIYLIKHLDYETAPKYEIPVRVTDGEFSSNGRVEVV--IIDVNDCAP----QFTLNPEN--LVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSV-IICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFEL-LTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSP 2492
Y ++E P +++G+LL +L P K + V + ++ G+ + TT ID E LC + C+ ++V V+ D+ F + ++I ++ED+NDN P F +I E LP A D D+ IN +Y L ++ F V D P LI+ KELD E DT+ + + + +P R + ++ + + + D NDN P F + V I EN + + QL ATD D + +R+ F ++ + F + + G+I + + LD E +P +++ V TDG S+ R V+ + D+ND P ++ +NP N +++SEN T + I V D+DS + + + C + + F + R N +L + R +++ ++ D G + + + V D NDN+P FT + + V EN P L +SATD D G N++I Y + + F +D+ +G + ++ LDREKQ+ Y TV+A D I + S ATV + V+D ND +P + F V E+ P +G + TD D G+N +++ + F + +G + +SFDRE Q ++ + D G + SS V I ++D NDN P I + P ++ + +T ++ +F D D G N +V +S+ + + LF + T I LK SD V + A D G P
Sbjct: 28 YTVREEMPENVLIGDLLKDLNLSLIPDKSLTTPMQFKLVYKTGDVPLIRIEEGTGEIFTTGARIDREKLCAGIVLDARCF-----YEVEVAVLPDEIF-RLVKIRFLIEDINDNAPLFPTTVINISIPEN-SAINSRYSLPAAIDPDIG-INGVQNYQLIKSQNIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAI-LQVSVADTNDNHPIFIEKEIEVSIPENAPIGSSVTQLHATDADIGENARIHFYFSNLVSNIAKRLFHLNTTTGLITVKEPLDREESPSHKLLVLATDGG-STPARATVLVNVTDINDNVPSIDIRYIVNPTNGTVLLSENAPLNTKIALITVMDKDSEH-NGRVTCFT---DHEVPFRL------RPVFSNQFLLETAAFLDFESTREYAIKLLAADAG-KPPLNQSSMLLIKVKDENDNAPVFTQSFISLSVPENNSPGAQLTKISATDADSGQNAEISYMLGFDAPPE-FNLDQRTGILTAVKKLDREKQEKYYFTVLAQDNGIPPL--MSNATVFVTVLDQNDNSPIFTHNEYNFYVPESLPKHGTVGLITVTDPDYGENSAVTLSIL--DVNDQFTIDPQSGVIRPNISFDRE--RQESYTFYVKAED-GGRVSRSSTARVTINVVDVNDNKP-IFIDPPSNYSFEWVLPSTNPGTV-----------VFKVVAIDDDIGMNAEVLYSI----VGGNTKGLFMIEQTSGNITLKEKCMVSDLGLHRVIVKANDLGQP 759 HSP 2 Score: 94.3597 bits (233), Expect = 7.292e-19 Identity = 101/354 (28.53%), Postives = 159/354 (44.92%), Query Frame = 3
Query: 1524 NDNSPQFTLTDYVVRVKEN--LKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKID-------ENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIF---TLIPSAFSHYFELLTNGSLLT-KVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQV-AFSMKIYPISLK---SNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFAD 2534
NDN+P F T + + EN + +Y L +A D D G+N Y + Q F +D + ++I + LDRE++D Y + V D + +STA + + V D ND P E S+ EN PIG+ + +L ATD DIG+N + F L+ + F L T L+T K DRE K L + D G ++ V + + D NDN P I + +I N T+ ++ +S+ N+ I T D D NG+V F+ P L+ SNQ +L T + + + + + + L+A D G PP S +++++ D
Sbjct: 133 NDNAPLFPTTVINISIPENSAINSRYSL--PAAIDPDIGINGVQNYQLIKS--QNIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQ--RSSTAILQVSVADTNDNHPIFIEKEIEVSIPENAPIGSSVTQLHATDADIGENARIHFYFSNLVSNIAKRLFHLNTTTGLITVKEPLDREESPSHK--LLVLATDGGS---TPARATVLVNVTDINDNVPSIDI--RYIV-------NPTNGTVLLSENAPLNTKIALITVMDKDSEHNGRVTCFTDHEVPFRLRPVFSNQ--FLLETAAFLDFESTRE------YAIKLLAADAGKPPLNQSSMLLIKVKD 458 HSP 3 Score: 92.0485 bits (227), Expect = 3.682e-18 Identity = 144/586 (24.57%), Postives = 235/586 (40.10%), Query Frame = 3
Query: 849 ITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKD----KTSRLQFIIVPTI-NVEIAKTFAISDQGIIYLIKHLDYETAPKYEIPVRVTDGEF---SSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRF---DITENNSERTKKIN-----IYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTL------TDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKV-SFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADI 2537
I +I+DINDN P F ++ + I EN +N + A D D Q I I +++ +T + + K LD E Y + V+V DG F SS ++V + D ND P F + I EN + + + D D N + F ++ N ++R +N I + + +DR++ + ++ D G A TV + V D NDN P + T+ V + EN + ++ DKD N ++ F + + N + LD E Y + ++A D + +S + I V D ND AP +S + SV EN G + K+ ATD D GQN + + L A F L +LT V DRE Q K+ + +D G +S+ T V + +LD+NDNSP I +N + + V ++ + + T +D D G N V S+ L N F ++ I+ S+ + + + A+D G R ++ + + D+
Sbjct: 125 IRFLIEDINDNAPLFPTTVINISIPENSAINSRYSLPAAIDPDIGINGVQNYQLIKSQNIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQVSVADTNDNHPIFIEKEIEVSIPENAPIGSSVTQLHATDADIGE------------NARIHFYFSNLVSNIAKRLFHLNTTTGLITVKEPLDREESPSHKLL--VLATDGG---STPARATVLVNVTDINDNVPSIDIRYIVNPTNGTVLLSENAPLNTKIALITVMDKDSEHNGRVTCFTDHEVPFRLRPVFSNQFLLETAAFLDFESTREYAIKLLAADAGKPPLNQSSM--LLIKVKDENDNAPVFTQSFISLSVPENNSPGAQLTKISATDADSGQNAEISYMLGFDAPPE-FNLDQRTGILTAVKKLDRE--KQEKYYFTVLAQDNGIPPLMSNAT-VFVTVLDQNDNSP--------IFTHN-------EYNFYVPESLPKHGTVGLITVTDPDYGENSAVTLSI------LDVNDQFTIDPQSGVIRPNISFDRERQESYTFYVKAEDGGRVSRSSTARVTINVVDV 666 HSP 4 Score: 53.1434 bits (126), Expect = 2.636e-6 Identity = 69/300 (23.00%), Postives = 122/300 (40.67%), Query Frame = 3
Query: 1686 FKIDENSGKIIGIQS-LDREK---------QDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGS------LLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADI 2537
+I+E +G+I + +DREK + +Y+V V I + + + D+ND AP ++ S+ EN I + A D DIG NG + LI S +++ L+ + DRE + + +++ V D G SS + + + D NDN P FI + +++ + S + +D D G N ++ F +S + +LF+LN T I +K + + + ++A D GS P + ++V DI
Sbjct: 75 IRIEEGTGEIFTTGARIDREKLCAGIVLDARCFYEVEVAVLPDEIFRL-----VKIRFLIEDINDNAPLFPTTVINISIPENSAINSRYSLPAAIDPDIGINGVQNYQLIKSQNIFGLDVIETPEGDKMPQLIVQKELDRE--EKDTYVMKVKVEDGGFP-QRSSTAILQVSVADTNDNHPI------FIEK---------EIEVSIPENAPIGSSVTQLHATDADIGENARIHFYFSNL-VSNIAKRLFHLNTTTGLITVKEPLDREESPSHKLLVLATDGGSTPARAT--VLVNVTDI 348
BLAST of Protocadherin gamma vs. Ensembl Mouse
Match: Pcdh11x (protocadherin 11 X-linked [Source:MGI Symbol;Acc:MGI:2442849]) HSP 1 Score: 204.912 bits (520), Expect = 2.598e-53 Identity = 210/776 (27.06%), Postives = 351/776 (45.23%), Query Frame = 3
Query: 243 YWIKENQPPGLVVGNLLDNL-----PYKQYFISPGYHFVLQKESEEFFSLKPGSS-MLTTSKLIDLESLCGS----SDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSV----SKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKD--KTSRLQFIIVPTINVEIAKTFAI-SDQGIIYLIKHLDYETAPKYEIPVRVTDGEFSSNGRVEVV--IIDVNDCAP----QFTLNPEN--LVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSV-IICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSP 2492
Y ++E P +++G+LL +L P K + V + ++ G+ + TT ID E LC + C+ ++V V+ D+ F + ++I ++ED+NDN P F +I E LP A D D+ IN +Y L ++ F V D P LI+ KELD E DT+ + + + +P R + ++ + + + D NDN P F + V I EN + + QL ATD D + +R+ F ++ + F + + G+I + + LD E +P +++ V TDG S+ R V+ + D+ND P ++ +NP N +++SEN T + I V D+DS + + + C + + F + R N +L + R +++ ++ D G + + + V D NDN+P FT + + V EN P L +SATD D G N++I Y + + F +D+ +G + ++ LDREKQ+ Y TV+A D I + S ATV + V+D ND +P + F V E+ P +G + TD D G+N +++ + +G + +SFDRE Q ++ + D G + SS V I ++D NDN P + D + Y++ V + + + +F D D G N +V +S+ + + LF + T I LK SD V + A D G P
Sbjct: 28 YTVREEMPENVLIGDLLKDLNLSLIPDKSLTTPMQFKLVYKTGDVPLIRIEEGTGEIFTTGARIDREKLCAGIVLDARCF-----YEVEVAVLPDEIF-RLVKIRFLIEDINDNAPLFPTTVINISIPEN-SAINSRYSLPAAIDPDIG-INGVQNYQLIKSQNIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAI-LQVSVADTNDNHPIFIEKEIEVSIPENAPIGSSVTQLHATDADIGENARIHFYFSNLVSNIAKRLFHLNTTTGLITVKEPLDREESPSHKLLVLATDGG-STPARATVLVNVTDINDNVPSIDIRYIVNPTNGTVLLSENAPLNTKIALITVMDKDSEH-NGRVTCFT---DHEVPFRL------RPVFSNQFLLETAAFLDFESTREYAIKLLAADAG-KPPLNQSSMLLIKVKDENDNAPVFTQSFISLSVPENNSPGAQLTKISATDADSGQNAEISYMLGFDAPPE-FNLDQRTGILTAVKKLDREKQEKYYFTVLAQDNGIPPL--MSNATVFVTVLDQNDNSPIFTHNEYNFYVPESLPKHGTVGLITVTDPDYGENSAVTLSIL-DVNDQFTIDPQSGVIRPNISFDRE--RQESYTFYVKAED-GGRVSRSSTARVTINVVDVNDNKP---IFIDPPSNYSFE---------WVLPSTNPGTVVFKVVAIDDDIGMNAEVLYSI----VGGNTKGLFMIEQTSGNITLKEKCMVSDLGLHRVIVKANDLGQP 759 HSP 2 Score: 94.3597 bits (233), Expect = 6.728e-19 Identity = 101/354 (28.53%), Postives = 159/354 (44.92%), Query Frame = 3
Query: 1524 NDNSPQFTLTDYVVRVKEN--LKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKID-------ENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIF---TLIPSAFSHYFELLTNGSLLT-KVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQV-AFSMKIYPISLK---SNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFAD 2534
NDN+P F T + + EN + +Y L +A D D G+N Y + Q F +D + ++I + LDRE++D Y + V D + +STA + + V D ND P E S+ EN PIG+ + +L ATD DIG+N + F L+ + F L T L+T K DRE K L + D G ++ V + + D NDN P I + +I N T+ ++ +S+ N+ I T D D NG+V F+ P L+ SNQ +L T + + + + + + L+A D G PP S +++++ D
Sbjct: 133 NDNAPLFPTTVINISIPENSAINSRYSL--PAAIDPDIGINGVQNYQLIKS--QNIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQ--RSSTAILQVSVADTNDNHPIFIEKEIEVSIPENAPIGSSVTQLHATDADIGENARIHFYFSNLVSNIAKRLFHLNTTTGLITVKEPLDREESPSHK--LLVLATDGGST---PARATVLVNVTDINDNVPSIDI--RYIV-------NPTNGTVLLSENAPLNTKIALITVMDKDSEHNGRVTCFTDHEVPFRLRPVFSNQ--FLLETAAFLDFESTRE------YAIKLLAADAGKPPLNQSSMLLIKVKD 458 HSP 3 Score: 90.1225 bits (222), Expect = 1.332e-17 Identity = 144/586 (24.57%), Postives = 236/586 (40.27%), Query Frame = 3
Query: 849 ITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKD----KTSRLQFIIVPTI-NVEIAKTFAISDQGIIYLIKHLDYETAPKYEIPVRVTDGEF---SSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRF---DITENNSERTKKIN-----IYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTL------TDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKV-SFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADI 2537
I +I+DINDN P F ++ + I EN +N + A D D Q I I +++ +T + + K LD E Y + V+V DG F SS ++V + D ND P F + I EN + + + D D N + F ++ N ++R +N I + + +DR++ + +++ D G A TV + V D NDN P + T+ V + EN + ++ DKD N ++ F + + N + LD E Y + ++A D + +S + I V D ND AP +S + SV EN G + K+ ATD D GQN + + L A F L +LT V DRE Q K+ + +D G +S+ T V + +LD+NDNSP I +N + + V ++ + + T +D D G N V S+ L N F ++ I+ S+ + + + A+D G R ++ + + D+
Sbjct: 125 IRFLIEDINDNAPLFPTTVINISIPENSAINSRYSLPAAIDPDIGINGVQNYQLIKSQNIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQVSVADTNDNHPIFIEKEIEVSIPENAPIGSSVTQLHATDADIGE------------NARIHFYFSNLVSNIAKRLFHLNTTTGLITVKEPLDREESPSHKL--LVLATDGG---STPARATVLVNVTDINDNVPSIDIRYIVNPTNGTVLLSENAPLNTKIALITVMDKDSEHNGRVTCFTDHEVPFRLRPVFSNQFLLETAAFLDFESTREYAIKLLAADAGKPPLNQSSM--LLIKVKDENDNAPVFTQSFISLSVPENNSPGAQLTKISATDADSGQNAEISYMLGFDAPPE-FNLDQRTGILTAVKKLDRE--KQEKYYFTVLAQDNGIPPLMSNAT-VFVTVLDQNDNSP--------IFTHN-------EYNFYVPESLPKHGTVGLITVTDPDYGENSAVTLSI------LDVNDQFTIDPQSGVIRPNISFDRERQESYTFYVKAEDGGRVSRSSTARVTINVVDV 666 HSP 4 Score: 53.1434 bits (126), Expect = 2.779e-6 Identity = 72/302 (23.84%), Postives = 124/302 (41.06%), Query Frame = 3
Query: 1689 KIDENSGKIIGIQS-LDREK---------QDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGS------LLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSN---QLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADI 2537
+I+E +G+I + +DREK + +Y+V V I + + + D+ND AP ++ S+ EN I + A D DIG NG + LI S +++ L+ + DRE + + +++ V D G SS + + + D NDN P FI + +++ + S + +D D G N ++ F Y +L SN +LF+LN T I +K + + + ++A D GS P + ++V DI
Sbjct: 76 RIEEGTGEIFTTGARIDREKLCAGIVLDARCFYEVEVAVLPDEIFRL-----VKIRFLIEDINDNAPLFPTTVINISIPENSAINSRYSLPAAIDPDIGINGVQNYQLIKSQNIFGLDVIETPEGDKMPQLIVQKELDRE--EKDTYVMKVKVED-GGFPQRSSTAILQVSVADTNDNHPI------FIEK---------EIEVSIPENAPIGSSVTQLHATDADIGENARIHF----YFSNLVSNIAKRLFHLNTTTGLITVKEPLDREESPSHKLLVLATDGGSTPARAT--VLVNVTDI 348
BLAST of Protocadherin gamma vs. Ensembl Mouse
Match: Pcdh11x (protocadherin 11 X-linked [Source:MGI Symbol;Acc:MGI:2442849]) HSP 1 Score: 206.068 bits (523), Expect = 2.754e-53 Identity = 212/781 (27.14%), Postives = 356/781 (45.58%), Query Frame = 3
Query: 243 YWIKENQPPGLVVGNLLDNL-----PYKQYFISPGYHFVLQKESEEFFSLKPGSS-MLTTSKLIDLESLCGS----SDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSID----LPRAFDKDLSLINNQISYSLQETSTYFHFSV----SKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKD--KTSRLQFIIVPTINVEIAKTFAI-SDQGIIYLIKHLDYETAPKYEIPVRVTDGEFSSNGRVEVV--IIDVNDCAP----QFTLNPEN--LVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSV-IICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFEL-LTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSP 2492
Y ++E P +++G+LL +L P K + V + ++ G+ + TT ID E LC + C+ ++V V+ D+ F + ++I ++ED+NDN P F +I E +I+ LP A D D+ IN +Y L ++ F V D P LI+ KELD E DT+ + + + +P R + ++ + + + D NDN P F + V I EN + + QL ATD D + +R+ F ++ + F + + G+I + + LD E +P +++ V TDG S+ R V+ + D+ND P ++ +NP N +++SEN T + I V D+DS + + + C + + F + R N +L + R +++ ++ D G + + + V D NDN+P FT + + V EN P L +SATD D G N++I Y + + F +D+ +G + ++ LDREKQ+ Y TV+A D I + S ATV + V+D ND +P + F V E+ P +G + TD D G+N +++ + F + +G + +SFDRE Q ++ + D G + SS V I ++D NDN P I + P ++ + +T ++ +F D D G N +V +S+ + + LF + T I LK SD V + A D G P
Sbjct: 28 YTVREEMPENVLIGDLLKDLNLSLIPDKSLTTPMQFKLVYKTGDVPLIRIEEGTGEIFTTGARIDREKLCAGIVLDARCF-----YEVEVAVLPDEIF-RLVKIRFLIEDINDNAPLFPTTVINISIPE-----NSAINSRYSLPAAIDPDIG-INGVQNYQLIKSQNIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAI-LQVSVADTNDNHPIFIEKEIEVSIPENAPIGSSVTQLHATDADIGENARIHFYFSNLVSNIAKRLFHLNTTTGLITVKEPLDREESPSHKLLVLATDGG-STPARATVLVNVTDINDNVPSIDIRYIVNPTNGTVLLSENAPLNTKIALITVMDKDSEH-NGRVTCFT---DHEVPFRL------RPVFSNQFLLETAAFLDFESTREYAIKLLAADAG-KPPLNQSSMLLIKVKDENDNAPVFTQSFISLSVPENNSPGAQLTKISATDADSGQNAEISYMLGFDAPPE-FNLDQRTGILTAVKKLDREKQEKYYFTVLAQDNGIPPL--MSNATVFVTVLDQNDNSPIFTHNEYNFYVPESLPKHGTVGLITVTDPDYGENSAVTLSIL--DVNDQFTIDPQSGVIRPNISFDRE--RQESYTFYVKAED-GGRVSRSSTARVTINVVDVNDNKP-IFIDPPSNYSFEWVLPSTNPGTV-----------VFKVVAIDDDIGMNAEVLYSI----VGGNTKGLFMIEQTSGNITLKEKCMVSDLGLHRVIVKANDLGQP 759 HSP 2 Score: 93.9745 bits (232), Expect = 9.741e-19 Identity = 101/354 (28.53%), Postives = 159/354 (44.92%), Query Frame = 3
Query: 1524 NDNSPQFTLTDYVVRVKEN--LKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKID-------ENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIF---TLIPSAFSHYFELLTNGSLLT-KVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQV-AFSMKIYPISLK---SNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFAD 2534
NDN+P F T + + EN + +Y L +A D D G+N Y + Q F +D + ++I + LDRE++D Y + V D + +STA + + V D ND P E S+ EN PIG+ + +L ATD DIG+N + F L+ + F L T L+T K DRE K L + D G ++ V + + D NDN P I + +I N T+ ++ +S+ N+ I T D D NG+V F+ P L+ SNQ +L T + + + + + + L+A D G PP S +++++ D
Sbjct: 133 NDNAPLFPTTVINISIPENSAINSRYSL--PAAIDPDIGINGVQNYQLIKS--QNIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQ--RSSTAILQVSVADTNDNHPIFIEKEIEVSIPENAPIGSSVTQLHATDADIGENARIHFYFSNLVSNIAKRLFHLNTTTGLITVKEPLDREESPSHK--LLVLATDGGS---TPARATVLVNVTDINDNVPSIDI--RYIV-------NPTNGTVLLSENAPLNTKIALITVMDKDSEHNGRVTCFTDHEVPFRLRPVFSNQ--FLLETAAFLDFESTRE------YAIKLLAADAGKPPLNQSSMLLIKVKD 458 HSP 3 Score: 91.2781 bits (225), Expect = 5.926e-18 Identity = 144/586 (24.57%), Postives = 235/586 (40.10%), Query Frame = 3
Query: 849 ITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKD----KTSRLQFIIVPTI-NVEIAKTFAISDQGIIYLIKHLDYETAPKYEIPVRVTDGEF---SSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRF---DITENNSERTKKIN-----IYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTL------TDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKV-SFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADI 2537
I +I+DINDN P F ++ + I EN +N + A D D Q I I +++ +T + + K LD E Y + V+V DG F SS ++V + D ND P F + I EN + + + D D N + F ++ N ++R +N I + + +DR++ + ++ D G A TV + V D NDN P + T+ V + EN + ++ DKD N ++ F + + N + LD E Y + ++A D + +S + I V D ND AP +S + SV EN G + K+ ATD D GQN + + L A F L +LT V DRE Q K+ + +D G +S+ T V + +LD+NDNSP I +N + + V ++ + + T +D D G N V S+ L N F ++ I+ S+ + + + A+D G R ++ + + D+
Sbjct: 125 IRFLIEDINDNAPLFPTTVINISIPENSAINSRYSLPAAIDPDIGINGVQNYQLIKSQNIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQVSVADTNDNHPIFIEKEIEVSIPENAPIGSSVTQLHATDADIGE------------NARIHFYFSNLVSNIAKRLFHLNTTTGLITVKEPLDREESPSHKLL--VLATDGG---STPARATVLVNVTDINDNVPSIDIRYIVNPTNGTVLLSENAPLNTKIALITVMDKDSEHNGRVTCFTDHEVPFRLRPVFSNQFLLETAAFLDFESTREYAIKLLAADAGKPPLNQSSM--LLIKVKDENDNAPVFTQSFISLSVPENNSPGAQLTKISATDADSGQNAEISYMLGFDAPPE-FNLDQRTGILTAVKKLDRE--KQEKYYFTVLAQDNGIPPLMSNAT-VFVTVLDQNDNSP--------IFTHN-------EYNFYVPESLPKHGTVGLITVTDPDYGENSAVTLSI------LDVNDQFTIDPQSGVIRPNISFDRERQESYTFYVKAEDGGRVSRSSTARVTINVVDV 666 HSP 4 Score: 52.7582 bits (125), Expect = 3.286e-6 Identity = 69/300 (23.00%), Postives = 122/300 (40.67%), Query Frame = 3
Query: 1686 FKIDENSGKIIGIQS-LDREK---------QDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGS------LLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADI 2537
+I+E +G+I + +DREK + +Y+V V I + + + D+ND AP ++ S+ EN I + A D DIG NG + LI S +++ L+ + DRE + + +++ V D G SS + + + D NDN P FI + +++ + S + +D D G N ++ F +S + +LF+LN T I +K + + + ++A D GS P + ++V DI
Sbjct: 75 IRIEEGTGEIFTTGARIDREKLCAGIVLDARCFYEVEVAVLPDEIFRL-----VKIRFLIEDINDNAPLFPTTVINISIPENSAINSRYSLPAAIDPDIGINGVQNYQLIKSQNIFGLDVIETPEGDKMPQLIVQKELDRE--EKDTYVMKVKVEDGGFP-QRSSTAILQVSVADTNDNHPI------FIEK---------EIEVSIPENAPIGSSVTQLHATDADIGENARIHFYFSNL-VSNIAKRLFHLNTTTGLITVKEPLDREESPSHKLLVLATDGGSTPARAT--VLVNVTDI 348
BLAST of Protocadherin gamma vs. Ensembl Mouse
Match: Pcdh11x (protocadherin 11 X-linked [Source:MGI Symbol;Acc:MGI:2442849]) HSP 1 Score: 206.068 bits (523), Expect = 2.754e-53 Identity = 212/781 (27.14%), Postives = 356/781 (45.58%), Query Frame = 3
Query: 243 YWIKENQPPGLVVGNLLDNL-----PYKQYFISPGYHFVLQKESEEFFSLKPGSS-MLTTSKLIDLESLCGS----SDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSID----LPRAFDKDLSLINNQISYSLQETSTYFHFSV----SKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKD--KTSRLQFIIVPTINVEIAKTFAI-SDQGIIYLIKHLDYETAPKYEIPVRVTDGEFSSNGRVEVV--IIDVNDCAP----QFTLNPEN--LVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSV-IICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFEL-LTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSP 2492
Y ++E P +++G+LL +L P K + V + ++ G+ + TT ID E LC + C+ ++V V+ D+ F + ++I ++ED+NDN P F +I E +I+ LP A D D+ IN +Y L ++ F V D P LI+ KELD E DT+ + + + +P R + ++ + + + D NDN P F + V I EN + + QL ATD D + +R+ F ++ + F + + G+I + + LD E +P +++ V TDG S+ R V+ + D+ND P ++ +NP N +++SEN T + I V D+DS + + + C + + F + R N +L + R +++ ++ D G + + + V D NDN+P FT + + V EN P L +SATD D G N++I Y + + F +D+ +G + ++ LDREKQ+ Y TV+A D I + S ATV + V+D ND +P + F V E+ P +G + TD D G+N +++ + F + +G + +SFDRE Q ++ + D G + SS V I ++D NDN P I + P ++ + +T ++ +F D D G N +V +S+ + + LF + T I LK SD V + A D G P
Sbjct: 28 YTVREEMPENVLIGDLLKDLNLSLIPDKSLTTPMQFKLVYKTGDVPLIRIEEGTGEIFTTGARIDREKLCAGIVLDARCF-----YEVEVAVLPDEIF-RLVKIRFLIEDINDNAPLFPTTVINISIPE-----NSAINSRYSLPAAIDPDIG-INGVQNYQLIKSQNIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAI-LQVSVADTNDNHPIFIEKEIEVSIPENAPIGSSVTQLHATDADIGENARIHFYFSNLVSNIAKRLFHLNTTTGLITVKEPLDREESPSHKLLVLATDGG-STPARATVLVNVTDINDNVPSIDIRYIVNPTNGTVLLSENAPLNTKIALITVMDKDSEH-NGRVTCFT---DHEVPFRL------RPVFSNQFLLETAAFLDFESTREYAIKLLAADAG-KPPLNQSSMLLIKVKDENDNAPVFTQSFISLSVPENNSPGAQLTKISATDADSGQNAEISYMLGFDAPPE-FNLDQRTGILTAVKKLDREKQEKYYFTVLAQDNGIPPL--MSNATVFVTVLDQNDNSPIFTHNEYNFYVPESLPKHGTVGLITVTDPDYGENSAVTLSIL--DVNDQFTIDPQSGVIRPNISFDRE--RQESYTFYVKAED-GGRVSRSSTARVTINVVDVNDNKP-IFIDPPSNYSFEWVLPSTNPGTV-----------VFKVVAIDDDIGMNAEVLYSI----VGGNTKGLFMIEQTSGNITLKEKCMVSDLGLHRVIVKANDLGQP 759 HSP 2 Score: 93.9745 bits (232), Expect = 9.741e-19 Identity = 101/354 (28.53%), Postives = 159/354 (44.92%), Query Frame = 3
Query: 1524 NDNSPQFTLTDYVVRVKEN--LKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKID-------ENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIF---TLIPSAFSHYFELLTNGSLLT-KVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQV-AFSMKIYPISLK---SNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFAD 2534
NDN+P F T + + EN + +Y L +A D D G+N Y + Q F +D + ++I + LDRE++D Y + V D + +STA + + V D ND P E S+ EN PIG+ + +L ATD DIG+N + F L+ + F L T L+T K DRE K L + D G ++ V + + D NDN P I + +I N T+ ++ +S+ N+ I T D D NG+V F+ P L+ SNQ +L T + + + + + + L+A D G PP S +++++ D
Sbjct: 133 NDNAPLFPTTVINISIPENSAINSRYSL--PAAIDPDIGINGVQNYQLIKS--QNIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQ--RSSTAILQVSVADTNDNHPIFIEKEIEVSIPENAPIGSSVTQLHATDADIGENARIHFYFSNLVSNIAKRLFHLNTTTGLITVKEPLDREESPSHK--LLVLATDGGS---TPARATVLVNVTDINDNVPSIDI--RYIV-------NPTNGTVLLSENAPLNTKIALITVMDKDSEHNGRVTCFTDHEVPFRLRPVFSNQ--FLLETAAFLDFESTRE------YAIKLLAADAGKPPLNQSSMLLIKVKD 458 HSP 3 Score: 91.2781 bits (225), Expect = 5.926e-18 Identity = 144/586 (24.57%), Postives = 235/586 (40.10%), Query Frame = 3
Query: 849 ITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKD----KTSRLQFIIVPTI-NVEIAKTFAISDQGIIYLIKHLDYETAPKYEIPVRVTDGEF---SSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRF---DITENNSERTKKIN-----IYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTL------TDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKV-SFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADI 2537
I +I+DINDN P F ++ + I EN +N + A D D Q I I +++ +T + + K LD E Y + V+V DG F SS ++V + D ND P F + I EN + + + D D N + F ++ N ++R +N I + + +DR++ + ++ D G A TV + V D NDN P + T+ V + EN + ++ DKD N ++ F + + N + LD E Y + ++A D + +S + I V D ND AP +S + SV EN G + K+ ATD D GQN + + L A F L +LT V DRE Q K+ + +D G +S+ T V + +LD+NDNSP I +N + + V ++ + + T +D D G N V S+ L N F ++ I+ S+ + + + A+D G R ++ + + D+
Sbjct: 125 IRFLIEDINDNAPLFPTTVINISIPENSAINSRYSLPAAIDPDIGINGVQNYQLIKSQNIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQVSVADTNDNHPIFIEKEIEVSIPENAPIGSSVTQLHATDADIGE------------NARIHFYFSNLVSNIAKRLFHLNTTTGLITVKEPLDREESPSHKLL--VLATDGG---STPARATVLVNVTDINDNVPSIDIRYIVNPTNGTVLLSENAPLNTKIALITVMDKDSEHNGRVTCFTDHEVPFRLRPVFSNQFLLETAAFLDFESTREYAIKLLAADAGKPPLNQSSM--LLIKVKDENDNAPVFTQSFISLSVPENNSPGAQLTKISATDADSGQNAEISYMLGFDAPPE-FNLDQRTGILTAVKKLDRE--KQEKYYFTVLAQDNGIPPLMSNAT-VFVTVLDQNDNSP--------IFTHN-------EYNFYVPESLPKHGTVGLITVTDPDYGENSAVTLSI------LDVNDQFTIDPQSGVIRPNISFDRERQESYTFYVKAEDGGRVSRSSTARVTINVVDV 666 HSP 4 Score: 52.7582 bits (125), Expect = 3.286e-6 Identity = 69/300 (23.00%), Postives = 122/300 (40.67%), Query Frame = 3
Query: 1686 FKIDENSGKIIGIQS-LDREK---------QDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGS------LLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADI 2537
+I+E +G+I + +DREK + +Y+V V I + + + D+ND AP ++ S+ EN I + A D DIG NG + LI S +++ L+ + DRE + + +++ V D G SS + + + D NDN P FI + +++ + S + +D D G N ++ F +S + +LF+LN T I +K + + + ++A D GS P + ++V DI
Sbjct: 75 IRIEEGTGEIFTTGARIDREKLCAGIVLDARCFYEVEVAVLPDEIFRL-----VKIRFLIEDINDNAPLFPTTVINISIPENSAINSRYSLPAAIDPDIGINGVQNYQLIKSQNIFGLDVIETPEGDKMPQLIVQKELDRE--EKDTYVMKVKVEDGGFP-QRSSTAILQVSVADTNDNHPI------FIEK---------EIEVSIPENAPIGSSVTQLHATDADIGENARIHFYFSNL-VSNIAKRLFHLNTTTGLITVKEPLDREESPSHKLLVLATDGGSTPARAT--VLVNVTDI 348
BLAST of Protocadherin gamma vs. UniProt/SwissProt
Match: sp|Q6KEQ9|PC11X_PIG (Protocadherin-11 X-linked OS=Sus scrofa OX=9823 GN=PCDH11X PE=2 SV=1) HSP 1 Score: 208.379 bits (529), Expect = 2.288e-53 Identity = 213/779 (27.34%), Postives = 358/779 (45.96%), Query Frame = 3
Query: 243 YWIKENQPPGLVVGNLLDNL-----PYKQYFISPGYHFVLQKESEEFFSLKPGSS-MLTTSKLIDLESLCGS----SDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSID----LPRAFDKDLSLINNQISYSLQETSTYFHFSV--SKDGK--PILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKD--KTSRLQFIIVPTINVEIAKTFAI-SDQGIIYLIKHLDYETAPKYEIPVRVTDGEFS-SNGRVEVVIIDVNDCAP----QFTLNPEN--LVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSV-IICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSP 2492
Y I+E P +++G+LL +L P + + V + ++ G+ + TT ID E LC + C+ ++V V+ D+ F + ++I ++ED+NDN P F +I E +I+ LP D D IN +Y L + + F V + +G+ P LI+ KELD E DT+ + + + +P R + ++ + + + D NDN P F ++ V I EN + + QL ATD D + +++ F I+ K F + S G+I + + LD E +P +++ V +DG + + V V + D+ND P ++ +NP N +V+SEN T + I V D+D+ + + + C + + F + R N +L + R +++ ++ D G + + + V D NDN+P FT + V EN P L +SA D D G N++I Y + + F +D +G + ++ LDREKQ+ Y TV+A D + + + ATV + V+D ND +P + F V EN P +G + TD D G+N I +++ + + T G + +SFDRE Q ++ + D G I SS V I ++D NDN P + V+P + NYS V + + + +F D D G N ++ +SM + + LF ++ T I LK +D + + AKD G P
Sbjct: 28 YTIREEMPENVLIGDLLKDLNLSLIPDRSLTTPMQFKLVYKTGDVPLIRIEEGTGEIFTTGARIDREKLCAGIVVDAHCF-----YEVEVAVLPDEIF-RLVKIRFLIEDINDNAPLFPATVINISIPE-----NSAINSRYALPATIDPDTG-INGVQNYHLIKGQSIFGLDVIETPEGEKMPQLIVQKELDREEKDTYVMKIKVEDGGFPQRSSTAI-LQVSVADTNDNRPVFKENEIEVSIPENAPVGSSVTQLHATDADIGENAKIHFYFSNLISNMAKKLFHLNSTTGLITIKEPLDREESPNHKLLVLASDGGLTPARAMVLVNVTDINDNIPSIDIRYIINPINGTVVLSENAPLNTKIALITVTDKDADH-NGWVSCFT---DHEVPFRL------RPVFSNQFLLETAAYLDYESTREYAIKLLAADAG-KPPLNQSSMLLIKVKDENDNAPVFTQPFLSLSVPENNSPGTQLTKISAMDADSGRNAEINYLLGFDAPSE-FNLDHRTGILTAVKKLDREKQEKYSFTVLAKDNGMPPL--MTNATVLVTVLDQNDNSPVFTHNEYNFYVPENLPRHGTVGLITVTDPDYGENSAVILSILDANDDFTIDPQT-GVIQPNISFDRE--KQESYTFYVKAED-GGRISRSSTAKVTINVVDVNDNKP-VFVVP----SSNYSFE-------LVPPSTNPGTVVFTVVAIDNDTGMNAELRYSM----VGGNTKGLFIIDQTSGNITLKEKCVFADLGLHRLVVKAKDLGQP 759 HSP 2 Score: 106.686 bits (265), Expect = 8.414e-22 Identity = 125/495 (25.25%), Postives = 216/495 (43.64%), Query Frame = 3
Query: 1104 YEIPVRVTDGEFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAM-RFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISD---HTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPR------INESLNTFSVYENQPIGTVIGKLIATDCDIGQNG--------KFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFAD 2534
YE+ V V E ++ +I D+ND AP F N+ I EN+ + D D+ +G++ ++ D+ E E K + + +E+DR++ D I D G R ++T + ++V D NDN P F + V + EN + + ATD D G N++I ++ S+ + ++ F ++ +G I + LDRE+ +++ V+A+D + R A V ++V D+ND P IN T + EN P+ T I + TD D NG + F L P FS+ F L T L D ES + +++++ D G+ L+ + + IK+ DENDN+P F + S++V + S + + + D D G N ++ Y + + F L+ + + + ++ T++AKD G PP T+ ++V D
Sbjct: 108 YEVEVAVLPDEIFRLVKIRFLIEDINDNAPLFPATVINISIPENSAINSRYALPATIDPDTGI--NGVQNYHLIKGQSIFGLDVIE-TPEGEKMPQLIVQKELDREE--KDTYVMKIKVEDGGFPQR-SSTAILQVSVADTNDNRPVFKENEIEVSIPENAPVGSSVTQLHATDADIGENAKIHFYFSNLISNMAKKLFHLNSTTGLITIKEPLDREESPNHKLLVLASDGGLTPAR----AMVLVNVTDINDNIPSIDIRYIINPINGTVVLSENAPLNTKIALITVTDKDADHNGWVSCFTDHEVPFRLRP-VFSNQFLLETAAYL------DYESTRE--YAIKLLAADAGKP-PLNQSSMLLIKVKDENDNAPV------FTQPF---------LSLSVPENNSPGTQLTKISAMDADSGRNAEIN-----YLLGFDAPSEFNLDHRTGILTAVKKLDREKQEKYSFTVLAKDNGMPPLMTNATVLVTVLD 562 HSP 3 Score: 89.3521 bits (220), Expect = 1.613e-16 Identity = 138/586 (23.55%), Postives = 236/586 (40.27%), Query Frame = 3
Query: 849 ITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDK----TSRLQFIIVPTI-NVEIAKTFAISDQGIIYLIKHLDYETAPKYEIPVRVTDGEF---SSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRF---DITENNSERTKKIN-----IYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTL------TDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKV-SFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADI 2537
I +I+DINDN P F ++ + I EN +N + D D I +I +++ +T + + K LD E Y + ++V DG F SS ++V + D ND P F N + I EN + + + D D N + F ++ N +++ +N I + + +DR++ + ++ +D G+ A V + V D NDN P + + V + EN + ++ TDKD N + F + + N + LD E Y + ++A D + +S + I V D ND AP + + SV EN GT + K+ A D D G+N + + L A S F L +LT V DRE Q K+S + +D G +++ T V + +LD+NDNSP + +++ N V + + + T +D D G N V S+ L +N F ++ I+ S+ + + + A+D G R ++ + + D+
Sbjct: 125 IRFLIEDINDNAPLFPATVINISIPENSAINSRYALPATIDPDTGINGVQNYHLIKGQSIFGLDVIETPEGEKMPQLIVQKELDREEKDTYVMKIKVEDGGFPQRSSTAILQVSVADTNDNRPVFKENEIEVSIPENAPVGSSVTQLHATDADIGE------------NAKIHFYFSNLISNMAKKLFHLNSTTGLITIKEPLDREESPNHKLL--VLASDGGLT---PARAMVLVNVTDINDNIPSIDIRYIINPINGTVVLSENAPLNTKIALITVTDKDADHNGWVSCFTDHEVPFRLRPVFSNQFLLETAAYLDYESTREYAIKLLAADAGKPPLNQSSM--LLIKVKDENDNAPVFTQPFLSLSVPENNSPGTQLTKISAMDADSGRNAEINYLLGFDAPSE-FNLDHRTGILTAVKKLDRE--KQEKYSFTVLAKDNGMPPLMTNAT-VLVTVLDQNDNSP----------VFTHNEYN-----FYVPENLPRHGTVGLITVTDPDYGENSAVILSI------LDANDDFTIDPQTGVIQPNISFDREKQESYTFYVKAEDGGRISRSSTAKVTINVVDV 666
BLAST of Protocadherin gamma vs. UniProt/SwissProt
Match: sp|Q9BZA8|PC11Y_HUMAN (Protocadherin-11 Y-linked OS=Homo sapiens OX=9606 GN=PCDH11Y PE=1 SV=1) HSP 1 Score: 207.994 bits (528), Expect = 4.716e-53 Identity = 218/804 (27.11%), Postives = 355/804 (44.15%), Query Frame = 3
Query: 243 YWIKENQPPGLVVGNLLDNL-----PYKQYFISPGYHFVLQKESEEFFSLKPGSS-MLTTSKLIDLESLCGS----SDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSID----LPRAFDKDLSLINNQISYSLQETSTYFHFSV----SKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKD--KTSRLQFIIVPTINVEIAKTFAI-SDQGIIYLIKHLDYETAPKYEIPVRVTDGEF-SSNGRVEVVIIDVNDCAP----QFTLNPEN--LVISENTLTKTLLGNIVVYDQDS-------AYVDSGIECREGSPNDAMRFDITENNS----ERTKKINI-YLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFAD 2534
Y I+E P +++GNLL +L P K + + V + ++ + + TT ID E LC C+ ++V ++ D+ F + ++I ++ED+NDN P F +I E +I+ LP A D D+ IN +Y L ++ F V D P LI+ KELD E DT+ + + + +P R + ++ + + + D NDN P F ++ V I EN + + QL ATD D + +++ F ++ + F + + G+I + + LD E P +++ V +DG + V V + DVND P ++ +NP N +V+SEN T + I V D+D+ + D I R P + +F + EN + E TK+ I L + + +N + + ++ NDN+P FT + V + EN P L+ VSATD D G N++I Y + + F +D +G + ++ LDREK+D Y T++A D + + TS TV + +ID ND +P + F V EN P +G + TD D G N +++ + T G + +SFDRE Q ++ + D G + SS V I ++D NDN P V P YNYS V + + + +F D D G N +V +S+ + + LF ++ I L +D V + A D G P S VI+ F +
Sbjct: 60 YTIREEIPENVLIGNLLKDLNLSLIPNKSLTTTMQFKLVYKTGDVPLIRIEEDTGEIFTTGARIDREKLCAGIPRDEHCF-----YEVEVAILPDEIF-RLVKIRFLIEDINDNAPLFPATVINISIPE-----NSAINSKYTLPAAVDPDVG-INGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAI-LQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVLASDGGLMPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRL-RPVFSNQF-LLENAAYLDYESTKEYAIKLLAADAGKPPLNQSAMLFIKVKDE--------------------NDNAPVFTQSFVTVSIPENNSPGIQLMKVSATDADSGPNAEINYLLGPDAPPE-FSLDRRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPL--TSNVTVFVSIIDQNDNSPVFTHNEYKFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQT-GVIRPNISFDRE--KQESYTFYVKAED-GGRVSRSSSAKVTINVVDVNDNKPVFIVPP-----YNYSYE-------LVLPSTNPGTVVFQVIAVDNDTGMNAEVRYSI----VGGNTRDLFAIDQETGNITLMEKCDVTDLGLHRVLVKANDLGQPDSLFSVVIVNLFVN 805 HSP 2 Score: 112.079 bits (279), Expect = 1.784e-23 Identity = 135/507 (26.63%), Postives = 226/507 (44.58%), Query Frame = 3
Query: 1104 YEIPVRVTDGEFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREG-SPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISD---HTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRI------NESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFI--------FTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSP---IFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADIPPRLIDQN 2561
YE+ V + E ++ +I D+ND AP F N+ I EN+ + D D +G++ E + D+ E E K + + +E+DR++ D + D G R ++T + ++V D NDN P F T+ V + EN + + ATD D G N++I + S+ + ++ F ++ +G I + LDRE+ +++ V+A+D + R A V ++V DVND P I N +T + EN P+ T I + TD D NG+ F L P FS+ F LL N + L D ES + +++++ D G+ L+ + IK+ DENDN+P T +TVS E+ NSP + + +D D GPN ++ Y + + F L+ + + + + +++L T++AKD G PP ++ + V +IDQN
Sbjct: 140 YEVEVAILPDEIFRLVKIRFLIEDINDNAPLFPATVINISIPENSAINSKYTLPAAVDPDVGI--NGVQNYELIKSQNIFGLDVIE-TPEGDKMPQLIVQKELDREE--KDTYVMKVKVEDGGFPQR-SSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVLASDGGLMPAR----AMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLRP-VFSNQF-LLENAAYL-----DYESTKE--YAIKLLAADAGKP-PLNQSAMLFIKVKDENDNAPVF-----------------TQSFVTVSIPEN-NSPGIQLMKVSATDADSGPNAEIN-----YLLGPDAPPEFSLDRRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVS-------IIDQN 596 HSP 3 Score: 97.4413 bits (241), Expect = 5.404e-19 Identity = 141/585 (24.10%), Postives = 230/585 (39.32%), Query Frame = 3
Query: 849 ITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKD----KTSRLQFIIVPTI-NVEIAKTFAISDQGIIYLIKHLDYETAPKYEIPVRVTDGEF---SSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRF---DITENNSERTKKIN-----IYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYV------VRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADI 2537
I +I+DINDN P F ++ + I EN +N + A D D + I I +++ +T + + K LD E Y + V+V DG F SS ++V + D ND P F + I EN T + + D D N + F ++ N + R +N I + + +DR++ + ++ +D G+ A V + V D NDN P + V V + EN+ + ++ TDKD N ++ F + + N + LD E Y + ++A D + + A + I V D ND AP +S T S+ EN G + K+ ATD D G N + + L P A + G L DRE + K+ I +D G L+S V + I+D+NDNSP + +N + V + + + T +D D G N V S+ L N F ++ I+ S+ + + + A+D G R +S + + D+
Sbjct: 157 IRFLIEDINDNAPLFPATVINISIPENSAINSKYTLPAAVDPDVGINGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLHATDADIGE------------NAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLL--VLASDGGL---MPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLRPVFSNQFLLENAAYLDYESTKEYAIKLLAADAGKPPLNQS--AMLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLMKVSATDADSGPNAEINYLLGPDAPPEFSLDRRTGMLTVVKKLDRE--KEDKYLFTILAKDNGVP-PLTSNVTVFVSIIDQNDNSP--------VFTHN-------EYKFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSI------LDENDDFTIDSQTGVIRPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDV 698
BLAST of Protocadherin gamma vs. UniProt/SwissProt
Match: sp|Q6X862|PC11X_GORGO (Protocadherin-11 X-linked OS=Gorilla gorilla gorilla OX=9595 GN=PCDH11X PE=3 SV=1) HSP 1 Score: 202.601 bits (514), Expect = 2.392e-51 Identity = 211/793 (26.61%), Postives = 354/793 (44.64%), Query Frame = 3
Query: 243 YWIKENQPPGLVVGNLLDNL-----PYKQYFISPGYHFVLQKESEEFFSLKPGSS-MLTTSKLIDLESLCGS----SDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSID----LPRAFDKDLSLINNQISYSLQETSTYFHFSV----SKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKD--KTSRLQFIIVPTINVEIAKTFAI-SDQGIIYLIKHLDYETAPKYEIPVRVTDGEF-SSNGRVEVVIIDVNDCAP----QFTLNPEN--LVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSV-IICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFAD 2534
Y I+E P +++G+LL +L P K + + V + ++ + + TT ID E LC C+ ++V ++ D+ F + ++I ++ED+NDN P F +I E +I+ LP A D D+ IN +Y L ++ F V D P LI+ KELD E DT+ + + + +P R + ++ + + + D NDN P F ++ V I EN + + QL ATD D + +++ F ++ + F + + G+I + + LD E P +++ V +DG + V V + DVND P ++ +NP N +V+SEN T + I V D+D+ + + + C + + F + R N +L + + +++ ++ D G + + + V D NDN+P FT + V + EN P L VSATD D G N++I Y + + F +D +G + ++ LDREK+D Y T++A D + + TS TV + +ID ND +P + F V EN P +G + TD D G N +++ + T G + +SFDRE Q ++ + D G + SS V I ++D NDN P V P + Y+Y V + + + +F D D G N +V +S+ + + LF ++ I L +D V + A D G P S VI+ F +
Sbjct: 28 YTIREEMPENVLIGDLLKDLNLSLIPNKSLTTAMQFKLVYKTGDVPLIRIEEDTGEIFTTGARIDREKLCAGIPRDEHCF-----YEVEVAILPDEIF-RLVKIRFLIEDINDNAPLFPATVINISIPE-----NSAINSKYTLPAAVDPDVG-INGVQNYELIKSQNMFGLDVIETPEGDKMPQLIVQKELDREKKDTYVMKVKVEDGGFPQRSSTAI-LQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVLASDGGLMPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADH-NGRVTCFT---DHEIPFRL------RPVFSNQFLLETAAYLDYESTKEYAIKLLAADAG-KPPLNQSAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLTKVSATDADSGPNAEINYLLGPDAPPE-FSLDRRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPL--TSNVTVFVSIIDQNDNSPVFTHNEYNFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQT-GVIRPNISFDRE--KQESYTFYVKAED-GGRVSRSSSAKVTINVVDVNDNKPVFIVPP---SNYSYE---------LVLPSTNPGTVVFQVIAVDNDTGMNAEVRYSI----VGGNTRDLFAIDQETGNITLMEKCDVTDLGLHRVLVKANDLGQPDSLFSVVIVNLFVN 773 HSP 2 Score: 111.309 bits (277), Expect = 3.243e-23 Identity = 136/507 (26.82%), Postives = 224/507 (44.18%), Query Frame = 3
Query: 1104 YEIPVRVTDGEFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAM-RFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISD---HTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRI------NESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFI--------FTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFT---FSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADIPPRLIDQN 2561
YE+ V + E ++ +I D+ND AP F N+ I EN+ + D D +G++ E + M D+ E E K + + +E+DR++ D + D G R ++T + ++V D NDN P F T+ V + EN + + ATD D G N++I + S+ + ++ F ++ +G I + LDRE+ +++ V+A+D + R A V ++V DVND P I N +T + EN P+ T I + TD D NG+ F L P FS+ F L T L D ES + +++++ D G+ L+ + IK+ DENDN+P T +TVS E+ NSP T +D D GPN ++ Y + + F L+ + + + + +++L T++AKD G PP ++ + V +IDQN
Sbjct: 108 YEVEVAILPDEIFRLVKIRFLIEDINDNAPLFPATVINISIPENSAINSKYTLPAAVDPDVGI--NGVQNYELIKSQNMFGLDVIE-TPEGDKMPQLIVQKELDREK--KDTYVMKVKVEDGGFPQR-SSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVLASDGGLMPAR----AMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLRP-VFSNQFLLETAAYL------DYESTKE--YAIKLLAADAGKP-PLNQSAMLFIKVKDENDNAPVF-----------------TQSFVTVSIPEN-NSPGIQLTKVSATDADSGPNAEIN-----YLLGPDAPPEFSLDRRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVS-------IIDQN 564 HSP 3 Score: 97.8265 bits (242), Expect = 4.060e-19 Identity = 141/585 (24.10%), Postives = 236/585 (40.34%), Query Frame = 3
Query: 849 ITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKD-KTSRLQ-FIIVPTIN---VEIAKTFAISDQGIIYLIKHLDYETAPKYEIPVRVTDGEF---SSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRF---DITENNSERTKKIN-----IYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYV------VRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADI 2537
I +I+DINDN P F ++ + I EN +N + A D D + +Q + ++ + N +++ +T + + K LD E Y + V+V DG F SS ++V + D ND P F + I EN T + + D D N + F ++ N + R +N I + + +DR++ + ++ +D G+ A V + V D NDN P + V V + EN+ + ++ TDKD N ++ F + + N + LD E Y + ++A D + + A + I V D ND AP +S T S+ EN G + K+ ATD D G N + + L P A + G L DRE + K+ I +D G L+S V + I+D+NDNSP + +++ N V + + + T +D D G N V S+ L N F ++ I+ S+ + + + A+D G R +S + + D+
Sbjct: 125 IRFLIEDINDNAPLFPATVINISIPENSAINSKYTLPAAVDPDVGINGVQNYELIKSQNMFGLDVIETPEGDKMPQLIVQKELDREKKDTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLHATDADIGE------------NAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLL--VLASDGGL---MPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLRPVFSNQFLLETAAYLDYESTKEYAIKLLAADAGKPPLNQS--AMLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLTKVSATDADSGPNAEINYLLGPDAPPEFSLDRRTGMLTVVKKLDRE--KEDKYLFTILAKDNGVP-PLTSNVTVFVSIIDQNDNSP----------VFTHNEYN-----FYVPENLPRHGTVGLITVTDPDYGDNSAVTLSI------LDENDDFTIDSQTGVIRPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDV 666
BLAST of Protocadherin gamma vs. UniProt/SwissProt
Match: sp|Q5DRE1|PCDC2_PANTR (Protocadherin alpha-C2 OS=Pan troglodytes OX=9598 GN=PCDHAC2 PE=3 SV=1) HSP 1 Score: 199.904 bits (507), Expect = 6.400e-51 Identity = 190/673 (28.23%), Postives = 317/673 (47.10%), Query Frame = 3
Query: 237 IKYWIKENQPPGLVVGNLLDNLPYKQYFISPGYHFV--LQKESEEFFSLKPGSSMLTTSKLIDLESLCGSSDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPI--------LIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTS--RLQFIIVPTINVEIAKTFAI-SDQGIIYLIKHLDYETAPKYEIPVRVTD-GEFSSNGRVEVV--IIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSA---YVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQ-----QYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRI--NESLNTFSVYE----NQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFEL-LTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILD 2162
++Y + E Q PG +VGN+ L + + PG + L S + L S L ++ ID E+LC + + ++ + + + + I+ D+NDN P F +Y + E + PG + A D D+ N+ +Y L + HF + D KP+ L++ K LD E H L+L A + P+R + + I++ + D NDN P F QS YRV + E+ +++L A+D D+ S L++ + + + F+I + G + +I LDYE A Y+I V+ TD G G +V+ I+DVND AP+ L + EN T++ + V DQDS V G+E + F + + T + ++ +DR+++ +++ + G + T+ T+ + + D NDN P F Y + ++EN P L V ATD D+ N+++ Y + + Q Y I+ SG + + S D EK + VTV A D + +ST T +++V+D+ND AP I S N+ + +E P G ++ K+IA D D GQN + L ++ F++ L G + T ES S F+L + VRD GE LS+ A+ + ++D
Sbjct: 44 LRYSVPEEQAPGALVGNVARALGLELRRLGPGCLRINHLGAPSPRYLELDLTSGALFVNERIDREALCEQR-----PRCLLSLEVLAHNPVAVSAVEVEIL--DINDNSPRFPRPNYQLQVSESV-APGARFHIESAQDPDVG-ANSVQTYELSPSE---HFEL--DLKPLQENSKVLELVLRKGLDREQAALHHLVLTAVDGGIPAR-SGTAQISVRVLDTNDNSPAFDQSTYRVQLREDSPPGTLVVKLNASDPDEGSNGELRYSLSSYTSDRERQLFSIDASTGEVRVIGGLDYEEASSYQIYVQATDRGPVPMAGHCKVLVDIVDVNDNAPEVVLTDLYSPVPENATPNTIVAVLSVNDQDSGPNRKVSLGLEA-------TLPFRLNGFGNSYT----LVVSGPLDRERV---AVYNITVTATDGGIPQLTSLRTLKVEISDINDNPPSFLEDSYSIYIQENNLPGVLLCTVQATDPDEKENAEVTYSLLEREIQGLPVTSYVSINSASGSLYAVNSFDYEKFREFFVTVEAQDKGNPPL--SSTGTANVYVVDMNDHAPHILYPSSTNSSAAFEMGPRTAPAGYLVTKVIAMDSDSGQNAWLFYHLAQTSDLDLFKVELHTGEIRTTRKMGDESGS--TFNLTVVVRDNGEP-SLSASVAITVAVVD 682 HSP 2 Score: 122.479 bits (306), Expect = 8.564e-27 Identity = 129/479 (26.93%), Postives = 216/479 (45.09%), Query Frame = 3
Query: 1155 VEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHT---HQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTL---IP---SAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPI-SLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRE---TSKVIMVQFADIPPRLI 2552
VEV I+D+ND +P+F L +SE+ + QD + ++ E SP++ D+ + E +K + + L + +DR+Q V+ D GI R + NDNSP F + Y V+++E+ P ++ ++A+D D+G N +++Y +S +T +Q F ID ++G++ I LD E+ YQ+ V ATD + V + ++DVND AP + + V EN T++ L D D G N K L +P + F + + L+ +G L DRE ++ +++ +T D G L+S + ++I D NDN P S + D + Y +N TV T D D+ N +V +S+ I L +N ++ S+ F VT+ A+DKG+PP T+ V +V D P ++
Sbjct: 134 VEVEILDINDNSPRFPRPNYQLQVSESVAPGARFH--IESAQDPDVGANSVQTYELSPSEHFELDL-KPLQENSKVLELVLRKGLDREQ--AALHHLVLTAVDGGIPARSGTAQISVRVLDT-NDNSPAFDQSTYRVQLREDSPPGTLVVKLNASDPDEGSNGELRYSLSSYTSDRERQLFSIDASTGEVRVIGGLDYEEASSYQIYVQATDRG--PVPMAGHCKVLVDIVDVNDNAPEVVLTDLYSPVPENATPNTIVAVLSVNDQDSGPNRKVSLGLEATLPFRLNGFGNSYTLVVSGPL------DRERVA--VYNITVTATDGGIP-QLTSLRTLKVEISDINDNPP--SFLEDSYSIYIQENNLPGVLLCTVQAT-------------DPDEKENAEVTYSLLEREIQGLPVTSYVSINSASGSLYAVNSFDYEKFREFFVTVEAQDKGNPPLSSTGTANVYVVDMNDHAPHIL 580 HSP 3 Score: 114.005 bits (284), Expect = 4.088e-24 Identity = 148/637 (23.23%), Postives = 260/637 (40.82%), Query Frame = 3
Query: 744 LIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKD--KTSRLQFIIVPTINVEIAKTFAISDQGIIYLI--KHLDYETAPKYEIPVRVTDGEF---SSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKI------------------------NIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDE--NSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPS-----AFSHYFEL-LTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSN-QLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFAD 2534
L + + +D E + R + + P A + + I DINDN PRF + Y++ + E+V + A D D S + + P+ + E+ + ++ L+ K LD E A + + + DG S ++ V ++D ND +P F + + + E++ TL+ + D D EGS N +R+ ++ S+R +++ IY+ Q DR + V++ ++D NDN+P+ LTD V EN P + +S D+D G N ++ + F+++ NS ++ LDRE+ Y +TV ATD I ++ TS T+ + + D+ND P E + + EN G ++ + ATD D +N + ++L+ + Y + +GSL SFD E + F + + +D G LSS + ++D ND++P I Y S N++ + +T + D D G N + Y ++ S+ LF + + I+ R G+ F +T++ +D G P S I V D
Sbjct: 99 LFVNERIDREALCEQRPRCLLSLEVLAHNPVAVSAVEVEILDINDNSPRFPRPNYQLQVSESVAPGARFHIESAQDPDVGANSVQTYELSPSEHFELDLKPLQENSKVLELVLRKGLDREQAALHHLVLTAVDGGIPARSGTAQISVRVLDTNDNSPAFDQSTYRVQLREDSPPGTLVVKLNASDPD-----------EGS-NGELRYSLSSYTSDRERQLFSIDASTGEVRVIGGLDYEEASSYQIYV-QATDRGPVPMAGHCKVLV------------------DIVDVNDNAPEVVLTDLYSPVPENATPNTIVAVLSVNDQDSGPNRKVSLGLEATLP---FRLNGFGNSYTLVVSGPLDRERVAVYNITVTATDGGIPQL--TSLRTLKVEISDINDNPPSFLEDSYSIYIQENNLPGVLLCTVQATDPDEKENAEVTYSLLEREIQGLPVTSYVSINSASGSLYAVNSFDYEKFRE--FFVTVEAQDKGNP-PLSSTGTANVYVVDMNDHAPHI--------LYPSSTNSSAAFEMG-PRTAPAGYLVTKVIAMDSDSGQNAWL-----FYHLAQTSDLDLFKVELHTGEIRTTRKMGDESGSTFNLTVVVRDNGEPSLSASVAITVAVVD 682 HSP 4 Score: 103.605 bits (257), Expect = 5.806e-21 Identity = 110/443 (24.83%), Postives = 198/443 (44.70%), Query Frame = 3
Query: 1302 GIECREGSPNDAMRFDITENNSERTKKINI-----YLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKID-----ENSG--KIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELL----TNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKI-YPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADI---PPRLIDQNISM 2570
G+E R P +R + S R ++++ ++N+ IDR+ + R ++ + N A V + +LD NDNSP+F +Y ++V E++ P SA D D G NS Y +S H F++D ENS +++ + LDRE+ + + + A D I + TA + + V+D ND +P ++S + E+ P GT++ KL A+D D G NG+ ++L +L + G + D E S + ++ T R + ++ V + I+D NDN+P++ + TD V + + N+ + + +D D GPN +V+ ++ P L Y V + +R + +T+ A D G P + + + V+ +DI PP ++ + S+
Sbjct: 66 GLELRRLGPG-CLRINHLGAPSPRYLELDLTSGALFVNERIDREALCEQRPRCLLSLEVLAHN--PVAVSAVEVEILDINDNSPRFPRPNYQLQVSESVAPGARFHIESAQDPDVGANSVQTYELSPSEH---FELDLKPLQENSKVLELVLRKGLDREQAALHHLVLTAVDGGIPA--RSGTAQISVRVLDTNDNSPAFDQSTYRVQLREDSPPGTLVVKLNASDPDEGSNGELRYSLSSYTSDRERQLFSIDASTGEVRVIGGLDYEEASSYQIYVQATDRG---PVPMAGHCKVLVDIVDVNDNAPEVVL---------------TDLYSPVPENATPNTIVAVLSVNDQDSGPNRKVSLGLEATLPFRLNGFGNSYTLVVSGPLDRERVAV------YNITVTATDGGIPQLTSLRTLKVEISDINDNPPSFLEDSYSI 476
BLAST of Protocadherin gamma vs. UniProt/SwissProt
Match: sp|Q9Y5I4|PCDC2_HUMAN (Protocadherin alpha-C2 OS=Homo sapiens OX=9606 GN=PCDHAC2 PE=2 SV=1) HSP 1 Score: 199.519 bits (506), Expect = 8.941e-51 Identity = 190/673 (28.23%), Postives = 317/673 (47.10%), Query Frame = 3
Query: 237 IKYWIKENQPPGLVVGNLLDNLPYKQYFISPGYHFV--LQKESEEFFSLKPGSSMLTTSKLIDLESLCGSSDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPI--------LIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTS--RLQFIIVPTINVEIAKTFAI-SDQGIIYLIKHLDYETAPKYEIPVRVTD-GEFSSNGRVEVV--IIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSA---YVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQ-----QYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRI--NESLNTFSVYE----NQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFEL-LTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILD 2162
++Y + E Q PG +VGN+ L + + PG + L S + L S L ++ ID E+LC + + ++ + + + + I+ D+NDN P F +Y + E + PG + A D D+ N+ +Y L + HF + D KP+ L++ K LD E H L+L A + P+R + + I++ + D NDN P F QS YRV + E+ +++L A+D D+ S L++ + + + F+I + G + +I LDYE A Y+I V+ TD G G +V+ I+DVND AP+ L + EN T++ + V DQDS V G+E + F + + T + ++ +DR+++ +++ + G + T+ T+ + + D NDN P F Y + ++EN P L V ATD D+ N+++ Y + + Q Y I+ SG + + S D EK + VTV A D + +ST T +++V+D+ND AP I S N+ + +E P G ++ K+IA D D GQN + L ++ F++ L G + T ES S F+L + VRD GE LS+ A+ + ++D
Sbjct: 44 LRYSVPEEQAPGALVGNVARALGLELRRLGPGCLRINHLGAPSPRYLELDLTSGALFVNERIDREALCEQR-----PRCLLSLEVLAHNPVAVSAVEVEIL--DINDNSPRFPRPNYQLQVSESV-APGARFHIESAQDPDVG-ANSVQTYELSPSE---HFEL--DLKPLQENSKVLELVLRKGLDREQAALHHLVLTAVDGGIPAR-SGTAQISVRVLDTNDNSPAFDQSTYRVQLREDSPPGTLVVKLNASDPDEGSNGELRYSLSSYTSDRERQLFSIDASTGEVRVIGGLDYEEASSYQIYVQATDRGPVPMAGHCKVLVDIVDVNDNAPEVVLTDLYSPVPENATPNTIVAVLSVNDQDSGPNRKVSLGLEA-------TLPFRLNGFGNSYT----LVVSGPLDRERV---AVYNITVTATDGGIPQLTSLRTLKVEISDINDNPPSFLEDSYSIYIQENNLPGVLLCTVQATDPDEKENAEVTYSLLEREIQGLPVTSYVSINSASGSLYAVNSFDYEKFREFFVTVEAQDKGSPPL--SSTVTANVYVVDMNDHAPHILYPTSTNSSAAFEMVPRTAPAGYLVTKVIAMDSDSGQNAWLFYHLAQTSDLDLFKVELHTGEIRTTRKMGDESGS--TFNLTVVVRDNGEP-SLSASVAITVAVVD 682 HSP 2 Score: 124.02 bits (310), Expect = 2.818e-27 Identity = 130/479 (27.14%), Postives = 216/479 (45.09%), Query Frame = 3
Query: 1155 VEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHT---HQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTL---IP---SAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPI-SLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRE---TSKVIMVQFADIPPRLI 2552
VEV I+D+ND +P+F L +SE+ + QD + ++ E SP++ D+ + E +K + + L + +DR+Q V+ D GI R + NDNSP F + Y V+++E+ P ++ ++A+D D+G N +++Y +S +T +Q F ID ++G++ I LD E+ YQ+ V ATD + V + ++DVND AP + + V EN T++ L D D G N K L +P + F + + L+ +G L DRE ++ +++ +T D G L+S + ++I D NDN P S + D + Y +N TV T D D+ N +V +S+ I L +N ++ S+ F VT+ A+DKGSPP T+ V +V D P ++
Sbjct: 134 VEVEILDINDNSPRFPRPNYQLQVSESVAPGARFH--IESAQDPDVGANSVQTYELSPSEHFELDL-KPLQENSKVLELVLRKGLDREQ--AALHHLVLTAVDGGIPARSGTAQISVRVLDT-NDNSPAFDQSTYRVQLREDSPPGTLVVKLNASDPDEGSNGELRYSLSSYTSDRERQLFSIDASTGEVRVIGGLDYEEASSYQIYVQATDRG--PVPMAGHCKVLVDIVDVNDNAPEVVLTDLYSPVPENATPNTIVAVLSVNDQDSGPNRKVSLGLEATLPFRLNGFGNSYTLVVSGPL------DRERVA--VYNITVTATDGGIP-QLTSLRTLKVEISDINDNPP--SFLEDSYSIYIQENNLPGVLLCTVQAT-------------DPDEKENAEVTYSLLEREIQGLPVTSYVSINSASGSLYAVNSFDYEKFREFFVTVEAQDKGSPPLSSTVTANVYVVDMNDHAPHIL 580 HSP 3 Score: 115.931 bits (289), Expect = 9.098e-25 Identity = 149/637 (23.39%), Postives = 261/637 (40.97%), Query Frame = 3
Query: 744 LIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKD--KTSRLQFIIVPTINVEIAKTFAISDQGIIYLI--KHLDYETAPKYEIPVRVTDGEF---SSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKI------------------------NIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDE--NSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPS-----AFSHYFEL-LTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSN-QLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFAD 2534
L + + +D E + R + + P A + + I DINDN PRF + Y++ + E+V + A D D S + + P+ + E+ + ++ L+ K LD E A + + + DG S ++ V ++D ND +P F + + + E++ TL+ + D D EGS N +R+ ++ S+R +++ IY+ Q DR + V++ ++D NDN+P+ LTD V EN P + +S D+D G N ++ + F+++ NS ++ LDRE+ Y +TV ATD I ++ TS T+ + + D+ND P E + + EN G ++ + ATD D +N + ++L+ + Y + +GSL SFD E + F + + +D G LSS + ++D ND++P I Y S N++ + V +T + D D G N + Y ++ S+ LF + + I+ R G+ F +T++ +D G P S I V D
Sbjct: 99 LFVNERIDREALCEQRPRCLLSLEVLAHNPVAVSAVEVEILDINDNSPRFPRPNYQLQVSESVAPGARFHIESAQDPDVGANSVQTYELSPSEHFELDLKPLQENSKVLELVLRKGLDREQAALHHLVLTAVDGGIPARSGTAQISVRVLDTNDNSPAFDQSTYRVQLREDSPPGTLVVKLNASDPD-----------EGS-NGELRYSLSSYTSDRERQLFSIDASTGEVRVIGGLDYEEASSYQIYV-QATDRGPVPMAGHCKVLV------------------DIVDVNDNAPEVVLTDLYSPVPENATPNTIVAVLSVNDQDSGPNRKVSLGLEATLP---FRLNGFGNSYTLVVSGPLDRERVAVYNITVTATDGGIPQL--TSLRTLKVEISDINDNPPSFLEDSYSIYIQENNLPGVLLCTVQATDPDEKENAEVTYSLLEREIQGLPVTSYVSINSASGSLYAVNSFDYEKFRE--FFVTVEAQDKGSP-PLSSTVTANVYVVDMNDHAPHI--------LYPTSTNSSAAFEM-VPRTAPAGYLVTKVIAMDSDSGQNAWL-----FYHLAQTSDLDLFKVELHTGEIRTTRKMGDESGSTFNLTVVVRDNGEPSLSASVAITVAVVD 682 HSP 4 Score: 103.605 bits (257), Expect = 6.541e-21 Identity = 110/443 (24.83%), Postives = 198/443 (44.70%), Query Frame = 3
Query: 1302 GIECREGSPNDAMRFDITENNSERTKKINI-----YLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKID-----ENSG--KIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELL----TNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMK-IYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADI---PPRLIDQNISM 2570
G+E R P +R + S R ++++ ++N+ IDR+ + R ++ + N A V + +LD NDNSP+F +Y ++V E++ P SA D D G NS Y +S H F++D ENS +++ + LDRE+ + + + A D I + TA + + V+D ND +P ++S + E+ P GT++ KL A+D D G NG+ ++L +L + G + D E S + ++ T R + ++ V + I+D NDN+P++ + TD V + + N+ + + +D D GPN +V+ ++ P L Y V + +R + +T+ A D G P + + + V+ +DI PP ++ + S+
Sbjct: 66 GLELRRLGPG-CLRINHLGAPSPRYLELDLTSGALFVNERIDREALCEQRPRCLLSLEVLAHN--PVAVSAVEVEILDINDNSPRFPRPNYQLQVSESVAPGARFHIESAQDPDVGANSVQTYELSPSEH---FELDLKPLQENSKVLELVLRKGLDREQAALHHLVLTAVDGGIPA--RSGTAQISVRVLDTNDNSPAFDQSTYRVQLREDSPPGTLVVKLNASDPDEGSNGELRYSLSSYTSDRERQLFSIDASTGEVRVIGGLDYEEASSYQIYVQATDRG---PVPMAGHCKVLVDIVDVNDNAPEVVL---------------TDLYSPVPENATPNTIVAVLSVNDQDSGPNRKVSLGLEATLPFRLNGFGNSYTLVVSGPLDRERVAV------YNITVTATDGGIPQLTSLRTLKVEISDINDNPPSFLEDSYSI 476
BLAST of Protocadherin gamma vs. TrEMBL
Match: A0A158QVE7 (Uncharacterized protein OS=Mesocestoides corti OX=53468 GN=MCOS_LOCUS7791 PE=4 SV=1) HSP 1 Score: 386.341 bits (991), Expect = 2.742e-110 Identity = 281/868 (32.37%), Postives = 438/868 (50.46%), Query Frame = 3
Query: 237 IKYWIKENQPPGLVVGNLLDNLPYKQYFISPGYHFVLQKESEEFFSLKPGSSMLTTSKLIDLESLC---------------GSSD---CYNGTKEFQV---VALVMRDKQFIQELRINIIVEDVNDNDPFFKNAS-YTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQE----TSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWN-------QNYPSRPT----ASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKT---FAISDQGIIYLIKHLDYETAPKYEIPVRVTDGEFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECR---EGSPNDAMRFDITENNSERTKKINIYLNQEIDR---DQINGDRRFSVIIC---NDMGINN-RXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRI---NESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLI-PSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDF-----------------------IAAYNYSDNNTTD--------CSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYP-----ISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSP-PRETSKVIMVQFADIPPRLIDQNIS 2567
++Y + EN PPG +G + + P K S G + F L P +S L ID E LC G +D C T E V V ++ D R+ + + DV+DN P F + + +++++KE +Y G+ IDLP+A D DL + I Y L++ FHF VS+ G P L+++K+LDAET + + ++A+N + P+R + + L + I + D NDNEP F ++ Y V + EN I LKA D+D+T++L++ +V + + + T F + G + L ++LD+E+ Y +PVRVTDG+FS++ + VV+ DVND AP+F LNP +LV+ E K +G + VYD DS V+ + C+ E + A+ F ++ E+DR D + G ++C N++ R TAT T TLT+ D NDN P F+ Y V + EN +I V A D DDG N+++ Y + DH + F +D SG + DREK+D YQVT++A+D R TS+A +++ ++D ND AP + ++ N ++EN P+G+++G L+ATD D G+NG+ +F L S+ S FEL NGSL T + DRE TVRD G LS+ VCI++LDENDN P V+PD + A+ TTD S++VS E+ I +D D+GPNGQV ++++ + ++ + ++ + L+RS Q+ D + + AKD+G+P R +K+++V DIPPR +D+ S
Sbjct: 28 VRYKLAENSPPGHFLGAVAGSSPQKGVTNSFG-------APSQLFQLDPLTSELYLKSEIDAEKLCALATRREDEKGGPNGGLTDVVTCTPSTGELSVQLDVNSLLPDGSLQAVFRVTVEILDVDDNPPRFDHQTVWSRHLKEALYRKGRKIDLPKARDIDLLPQHRNIQYILEQNPPSAEGVFHFEVSERGTPTLVLLKDLDAETQEFFNMTVVAFNPPRSSHGKYTPTRASTDLESRLRVEIYVVDTNDNEPYFEKTSYNVTVPENTLPGTTIFHLKAHDEDRTAKLEYFLVESESSTTSATTSTFEVEKSGRVVLRRNLDFESRQTYRLPVRVTDGDFSADSTLNVVVADVNDEAPRFELNPIHLVVEEGASAKRSIGQLRVYDPDSVMVNGVVRCKEPEEWAHRQALTFSPDPQTHPTVGLYDLQTRVELDREGSDTVEGGYALVRLVCWDGNELQTGGPRLTATMTTTLTIKDINDNRPTFSEPIYHVNIAENNHLGAKIIQVEAYDPDDGENAEVTYSLLDHAN---FHVDPVSGWVTAATEFDREKRDSYQVTIIASDSGFQ--RLTSSALLNVTILDQNDNAPVLLPCDKVSNPLVIWENSPVGSLVGHLVATDADTGRNGEVVFKLPQKSSSSSPFELQPNGSLFTALPLDREQ----------TVRDRGGPNALSTSETVCIRVLDENDNDPHF-VLPDRLYSHDDWLADSSPAYLWKRESVDVGAHGTKLAKTTDPVGAEALEPSLSVSIHETNGQLITRLEATDPDEGPNGQVVYALQRHAQSRARVNRAAGDFLTVDTATGEVWLRRSLQEEDLGPHVFVVSAKDQGTPMSRFENKLLLVLVEDIPPRALDRGAS 872
BLAST of Protocadherin gamma vs. TrEMBL
Match: A0A158R969 (Uncharacterized protein OS=Taenia asiatica OX=60517 GN=TASK_LOCUS6760 PE=4 SV=1) HSP 1 Score: 350.132 bits (897), Expect = 2.767e-97 Identity = 272/900 (30.22%), Postives = 423/900 (47.00%), Query Frame = 3
Query: 237 IKYWIKENQPPGLVVGNLLDNLPYKQYFISPGYHFVLQKESEEFFSLKPGSSMLTTSKLIDLESLCGSSD------------------CYNGTKEFQV---VALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQE----TSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPT----------------ASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTIN---VEIAKTFAISDQGIIYLIKHLDYETAPKYEIPVRVTDGEFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQ---EIDR---DQINGDRRFSVIICNDMG--------------INNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRI---NESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSH--YFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFI-------------------------------------AAYNYSDNNTTDC------SITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYP-----ISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKG-SPPRETSKVIMVQFADIPPRLIDQNISMGSFS 2582
+KY ++EN+PPG V+G + + P K + G + F L P +S L+ ID E LC + C T E V V ++ D +++ + + DV+DN P F N + ++++E +Y G+ IDLP+A D DL + I Y+L++ FHF V+ P L+++K+LDAET + + L+A+N PSR + + + I I + D+NDNEP F +S Y V + E+ I QLKA D+D+ ++L + +V +A F + G + L + LD+E+ Y +P+ VTDG+FS+ + V++ DVND AP+F +NP +LV E T K +G + VYD DS V+ + C+E + + + + +Y Q E+DR D + G +IC D R T+T T TLT+ D NDN P F Y V V EN ++ V A D DDG N++I Y + D + F +D SG + DREK+D YQVT++A+D R T +A +++ ++D ND P + ++ V+EN P+GT +G LIA+D D G+NG+ F L P S +FEL NGSL T + DRE + + + + VRD G LSS +CIK+LDENDN P V+PD + A+ D T D S+ +S E+ I +D D+ NG++ + ++ + ++ + ++ + LKR+ Q+ D L + A D+G S R SK+++V DIPPR +D + SF+
Sbjct: 34 VKYRLEENRPPGHVLGIVASSAPQKSVINAFG-------APSQLFHLDPITSELSLRAEIDAEKLCNLASWRDGKKGGLNEDITDVITCTPSTGELSVHLDVNALLPDGGLQGVIKVTVEILDVDDNPPRFDNQVWKRHLREAVYRKGRKIDLPKASDIDLLPEHRLIRYTLEQHTPAAEEIFHFEVTNSDTPTLVLLKDLDAETQEYFNMTLVAFN---PSRSSHYHGMYVGDRRSEQSESRIQIEIFVVDMNDNEPYFEKSSYNVTVHEDTLPGAAIFQLKAHDEDRNAQLDYSLVEAPGGGQRAVASIFDVEKGGRVVLQRSLDFESCQSYILPISVTDGDFSAETVLHVIVADVNDEAPRFEINPLHLVAEEGTSAKRSIGQVRVYDPDSVEVNGVVRCKEPEERVHRQVLLFTPDPQAHPSAGLYDLQTRLELDREGPDTLAGGVALIRLICWDANELIHSSSATSTSGAATRRLTSTLTATLTIRDVNDNPPTFYQPVYHVAVAENNHIGAKIVQVLAHDPDDGENAEITYSLLDRAN---FHVDPVSGWVTAAIEFDREKRDSYQVTIIASDNGSQ--RLTGSALLNVTILDQNDNQPHLLPCDKVPTPLVVWENSPVGTFVGDLIASDADTGRNGELFFRL-PKKHSSTPHFELRPNGSLFTALPLDREQ--KATYEILVEVRDRGHPNVLSSTETICIKVLDENDNDPHF-VLPDRLYSLEDRLPDTPPAYLRKRESAEMVADASAGSTKLAKGASVAAGDAETADSGGGYEPSLRISLHETNGQLITRLEATDPDEDGNGRLVYGLRRHTHSRVRLNRAAGDFLSVDGNTGEVWLKRTLQEEDLGPHLFVVSANDQGASMSRSESKILLVSVEDIPPRSLDGGGASSSFT 914
BLAST of Protocadherin gamma vs. TrEMBL
Match: A0A068WT52 (Cadherin OS=Echinococcus granulosus OX=6210 GN=EgrG_000117200 PE=4 SV=1) HSP 1 Score: 347.821 bits (891), Expect = 2.529e-96 Identity = 282/930 (30.32%), Postives = 417/930 (44.84%), Query Frame = 3
Query: 237 IKYWIKENQPPGLVVGNLLDNLPYKQYFISPGYHFVLQKESEEFFSLKPGSSMLTTSKLIDLESLCGSSD------------------CYNGTKEFQV---VALVMRDKQFIQELRINIIVEDVNDNDPFFKNAS-YTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTY----FHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPT----------------ASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTIN---VEIAKTFAISDQGIIYLIKHLDYETAPKYEIPVRVTDGEFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSP---NDAMRFDITENNSERTKKINIYLNQEIDR---DQINGDRRFSVIICNDM--------------GINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRI---NESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPS-AFSHYFELLTNGSLLTKVSFDRES--------------------------LSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISV----------IPDFIAAY-------------------------------------NYSDNNTT-DCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYP-----ISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKG-SPPRETSKVIMVQFADIPPRLIDQNISMGSF 2579
+KY EN PPG ++GN+ + P K S Y F + F L P +S L+ ID E LCG + C T E V V ++ D ++ + V DV+DN P F N + ++++E+ Y G+ IDLP+A D DL + I Y+L++ S FHF VS P L+++K+LDAET + + L+A+N PSR + + L + I + D+NDNEP F + V + E+ I QLKA D+D+ ++L + +V +A F + G + L + LD+E+ Y +PV VTDG+FS+ + V + DVND AP+F +NP +L E T K +G + VYD DS V+ + C+E + F ++ E+DR D + G IC D G R T+T T TLT+ D NDN P F Y V V EN +I V A D DDG N++I Y + D + F +D SG + DREK+D YQVT++A+D R T +A +++ ++D ND P + ++ V+EN PIGT +G LIA+D DIG+NG+ +F L AF+ +FEL NGSL T + DRE + + L + VRD G LSS +CIK+LDENDN P + +PD +AY +DN + S+ +S E I +D D+ NG+V + ++ + ++ + +N I LKR+ Q+ D + A D+G S R SKV++V DIPPR +D + SF
Sbjct: 35 VKYRFSENSPPGQILGNVAGSAPQK----SVTYAF---GAPSQLFHLDPVTSELSLKAEIDAEKLCGLATWRDDEKGDPNNDLTDIVTCTPSTGELSVQLDVNAILPDGGLQAVFKVTVEVLDVDDNPPLFDNQRVWKRHLREVFYRKGRKIDLPKARDIDLLPEHRLIRYTLEQHSPAVEDTFHFEVSSSETPTLVLLKDLDAETQEYFNMTLVAFN---PSRSSHYHGMYVGGRGSEQLESRLQVEIYVVDMNDNEPYFEEPSCNVTVHEDTLPGTVIFQLKAHDEDRNAQLDYSLVEASGGGQQAVASIFEVEKGGRVILRRGLDFESCQNYILPVSVTDGDFSAETTLHVTVADVNDEAPRFEINPIHLTAEEGTSAKRSIGQVRVYDPDSVEVNGVVRCKEPEEWVHRQVLLFTPDPQAHPSAGLYDLQTRLELDREGPDTLAGGVALVRFICWDANEVIHTPSATSTFGGAVRRLTSTLTATLTIRDVNDNPPTFYQPVYHVAVAENNHIGTKIIQVQAHDPDDGENAEITYSLLDRAN---FHVDPVSGWVTAAIEFDREKRDSYQVTIIASDNGSQ--RLTGSALLNVTILDQNDNPPHLLPCDKVPTPLVVWENSPIGTFVGDLIASDADIGRNGELVFRLPKKLAFTSHFELRPNGSLFTALPLDREQKHPSSLHPQAGISVPSSHQSGLYPNLQHEATYELPVEVRDRGSPNALSSTETICIKVLDENDNDPHFVLPDRLYSLEDQLPDTPSAYLRKRESTEMASDASEGATKFAKGASVAAEMGGGRGDAEAADNGGGYEPSLRISLHEMNGQLITRLEATDPDEDANGRVVYGLRRHTHSRARLNRAAGDFLGVNGNTGEIWLKRTLQEDDLGPHFFVVSANDQGTSMSRSESKVLLVSVEDIPPRSLDVGGASSSF 949
BLAST of Protocadherin gamma vs. TrEMBL
Match: A0A087VYV2 (Cadherin OS=Echinococcus multilocularis OX=6211 GN=EmuJ_000117200 PE=4 SV=1) HSP 1 Score: 340.502 bits (872), Expect = 8.296e-94 Identity = 279/930 (30.00%), Postives = 420/930 (45.16%), Query Frame = 3
Query: 237 IKYWIKENQPPGLVVGNLLDNLPYKQYFISPGYHFVLQKESEEFFSLKPGSSMLTTSKLIDLESLCGSSD------------------CYNGTKEFQV---VALVMRDKQFIQELRINIIVEDVNDNDPFFKNAS-YTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTY----FHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPT----------------ASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTIN---VEIAKTFAISDQGIIYLIKHLDYETAPKYEIPVRVTDGEFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQ---EIDR---DQINGDRRFSVIICNDM--------------GINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRI---NESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPS-AFSHYFELLTNGSLLTKVSFDRES--------------------------LSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISV----------IPDFIAAY-----------NYSDNNTT---------------------------DCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYP-----ISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKG-SPPRETSKVIMVQFADIPPRLIDQNISMGSF 2579
+KY EN P G ++GN+ + P K S Y F + F L P +S L+ ID E LCG + C T E V V ++ D ++ + + DV+DN P F N + ++++E+ Y G+ IDLP+A D DL + Y+L++ S FHF VS P L+++K+LDAET + + L+A+N PSR + + L + I + D+NDNEP F Y V + E+ I QLKA D+D+ ++L + +V +A F + G + L + LD+E+ Y +PV VTDG+FS+ + V + DVND AP+F +NP +L E T K +G + VYD DS V+ + C+E + + + + +Y Q E+DR D + G +IC D G R T+T TVTLT+ D NDN P F Y V V EN + V A D DDG N++I Y + D + F +D SG + DREK+D YQVT++A+D R T + +++ ++D ND P + ++ V+EN PIGT +G LIA+D DIG+NG+ +F L AF+ +FEL NGSL T + DRE + + L + VRD G LSS +CIK+LDENDN P + +PD +AY + S+ T + S+ +S E++ I +D D+ NG V + ++ + ++ + +N + LKR+ Q+ D + A D+G S R SKV++V DIPPR +D + SF
Sbjct: 35 VKYRFSENSPLGQILGNVAGSAPQK----SVTYAF---GAPSQLFHLDPVTSELSLKAEIDAEKLCGLATWRDDEKGDQNNDLTDVVTCTPSTGELSVQLDVNAILPDGGLQAVFKVTVEILDVDDNPPRFDNQRVWKRHLREVFYRKGRKIDLPKARDIDLLPEHRLTRYTLEQHSPAVEEAFHFEVSSSETPTLVLLKDLDAETQEYFNMTLVAFN---PSRSSHYHGMYVGGRGSEQLESRLQVEIYVVDMNDNEPYFEGPSYNVTVHEDTLPGTVIFQLKAHDEDRNAQLDYSLVEASGGGQQAVASIFEVEKGGRVILRRGLDFESCQNYILPVSVTDGDFSAETTLHVTVADVNDEAPRFEINPIHLTAEEGTSAKRSIGQVRVYDPDSVEVNGVVRCKEPEEWAHRQVLLFTPDPQVHPSAGVYDLQTRLELDREGPDTLAGGVALVRLICWDANELIHTPSATSTFGGAMRRLTSTLTVTLTIRDVNDNPPTFYQPVYHVAVAENNHIGTKFVQVQAHDPDDGENAEITYSLLDRAN---FHVDPVSGWVTAAIEFDREKRDSYQVTIIASDNGSQ--RLTGSTLLNVTILDQNDNPPHLLPCDKVPTPLVVWENSPIGTFVGDLIASDADIGRNGELVFRLPKKLAFTSHFELRPNGSLFTALPLDREQKHPSPLRPQAGISVPSSHQSGLYPNLQHEATYELLVEVRDRGSPNALSSTETICIKVLDENDNDPHFVLPDRLYSVEDRLPDTPSAYLRKRESTEVASDASEGATKFAKGASVAAETGGGGGDAEAADNGGGYEPSLRISLHETSGQLITRLEATDPDEDANGGVVYGLRRHTHSRARLNRAAGDFLGVNGNTGEVWLKRTLQEDDLGPHFFVVSANDQGTSMSRSESKVLLVSVEDIPPRSLDVGGASSSF 949
BLAST of Protocadherin gamma vs. TrEMBL
Match: A0A0R3UI68 (Uncharacterized protein OS=Mesocestoides corti OX=53468 GN=MCOS_LOCUS7092 PE=4 SV=2) HSP 1 Score: 323.939 bits (829), Expect = 3.079e-88 Identity = 259/909 (28.49%), Postives = 429/909 (47.19%), Query Frame = 3
Query: 192 SFVSARDSSSLSFGTIKYWIKENQPPGLVVGNLLDNLPYKQYF----ISPG------YHFVLQKESEEFFSLKPGSSMLTTSKLIDLESLCGSSDCYNGTKEFQVVAL-VMRDKQFIQELRINIIVEDVNDNDPFFK---NASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQ------ETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPS------RPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAISDQGIIYLIKHLDYETAPKYEIPVRVTDGEFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSP---NDAMRF-------DITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINN-------------------RXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTH-QQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIR-------HTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPS----AFSH-------YFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYN-------------------YSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIY-------PISLKSNQLFYLNVTEKA------------------------IKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADIPPR 2546
S +S L F ++Y ++EN+P G +G L D+L +Q + G F L++ S F L ++MLTT +ID E C C + F V + V ++K+ I + + I V DV+DN+ F + + +KE+IY GK+++LPRA DKD++ + ISY L+ E+ SV+ D +P+L++ ++LD E + + L+AWN S A LP+ I + +IND EP F QS+Y V + E++EL I++LKA D+D + L + I V ++ F + G + L K D+E Y +P+R +DGEF+++ R+ + I+DVND AP F +NP ++ + EN L L+G +VV D D+ V+ +EC E S +RF ++++ ++Y +DR+ R S ++C D + + R T+T TV++ VLD NDN+P FT + ++EN + ++ +++ D D N+ +Y ++D F ++E +G++ + DRE +D Y + VVA D + + + STA V + ++DVND AP I E+ + EN+ G ++G + ATD D G NG+ +F L+P FS F + +NGS+ + FDRE +Q ++ ++ +D + LSS VC+ +LD NDN P I I A Y YS SI +S E+ +DLD+G N ++ +S+ + P + Q N EKA + L R + + + L+ +D+G P +++++I + D P R
Sbjct: 16 SMLSMSSGEQLQF-QLQYTMRENEPIGHRLGYLDDDLRRQQAMNFSRLCGGGAGCKDLRFRLREPSSRF-GLDEATAMLTTKSIIDFEEQC-IGQCRSTLDAFLTVTVNVWQEKKLIAFIHVRIQVVDVDDNNVEFPADISRPFVLRLKEVIYRKGKAVELPRAVDKDVTPKYSAISYRLEFSSGQWESMKMVELSVTNDSRPLLVLKEDLDYEEVKEYGFTLVAWNPESQSDGPKAMAREAQLPVVIHVLNINDMEPVFLQSLYTVEVPEDMELGTVIMELKAIDRDADAVLTYSINSAPGVNLSTPFEVEPDGKVRLRKACDFEKTTDYNLPIRASDGEFTASTRLHIRILDVNDEAPIFIVNPTHIAVEENQLPNILVGQVVVRDADTFAVNGNLECTEPSEEQDQQPLRFVRRSTSTGVSDSAVVPELHFDLYTKHTLDRED-GPPVRLSRLVCWDRVVGSSDLIYAGEVGHGAVSSKVTRLTSTLTVSVHVLDRNDNAPIFTQPTFTAELEENSDIRKEILQLTSKDYDTDENAVTRYRLTDENEDASLFYLNEETGRLYAMARFDRETRDVYHLQVVAFDSSSSPLEIPGAGQGAVSTALVTVRIVDVNDHAPIIQET-GELILPENKEAGFLVGHVTATDLDAGANGEVVFELVPEDPRVVFSSPQLTQVMGFRMTSNGSIFSTKEFDRE--AQSRYCFQVRAKDKSPDASLSSTARVCVNVLDVNDNPPVIHSIEGPNARYERDSPVPNPSFPGPDSFETLYSLAIYDLPSIRISLNEAPGYCALLIQATDLDEGENAELRYSINLAANCTPPNPPAPGYGQNADGNYQEKAESEWLEQPRQFRQHTFRMDERTGKLLLVRRLSHKELGAYCLELVVEDQGHPRLKSTQLIELTVEDTPSR 917
BLAST of Protocadherin gamma vs. Ensembl Cavefish
Match: pcdh1a (protocadherin 1a [Source:ZFIN;Acc:ZDB-GENE-091116-32]) HSP 1 Score: 223.787 bits (569), Expect = 1.670e-59 Identity = 223/802 (27.81%), Postives = 368/802 (45.89%), Query Frame = 3
Query: 195 FVSARDSSSLSFGTIKYWIKENQPPGLVVGNLLDNLPYKQYFISPGYHFVLQKESEEFFSLKPGSSMLTTSKLIDLESLCGSSDCYNGTK----EFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQ---ETSTYFHFSVSKDGK---PILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKD--KTSRLQFIIVPTINVEIAKTFAIS-DQGIIYLIKHLDYETAPKYEIPVRVTD---GEFSSNGRVEVVIIDVNDCAPQFTLNPENLV--------ISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSV-IICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKY-FISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMV 2522
F DS + + G I Y ++E QPP ++G+L + Q G+ + L+ + + TT ID E+L DC K EF+V + Q + + I V+D+NDN P F + T +++E + G + +P+A D+D N + Y L E S F ++ D P LI++ LD E D++ L + A + PSR +++L + +VI D NDN P+F +S Y + EN + + +LQ+KA D D +++ I + + K I GII + LD E ++ V D SS V + + D ND AP + L ISE+ T + + V D+D ++ + C +++ + KK + +D ++I R + V I+ D G N ++T ++ + V D NDNSP F+ + V E +P ++DV A D D G N+++ Y I+D + + F+ID +SG++ LDRE ++ Y+ V A D + H TATV I V+D ND P+ S +FSV EN P + +G + D D G+N + ++ P + + T G++L+ +SFDRE S F L+ G E SS V I +LDENDN+P ++ P + S D + V + E D+D G N ++ +S+ ++LFY++ ++ IKL + + G + + D+G P R ++ +
Sbjct: 11 FALLVDSINSALGGILYHVREEQPPNTLIGSLAAD----QGLPDSGHLYKLEVGAPYLRVDGKTGEIFTTEIPIDRETL---KDCRIKGKPCFLEFEVSVTDLIQNQSPRLIEGRIEVQDINDNTPQFPSPVLTLSVQENAHM-GATFAIPQATDRDTER-NGVLKYDLSAGPEASALFSLQMANDRGEKLPQLIVLGNLDRELKDSYDLTINAVDGGTPSRYSSAL-LRVVITDANDNAPQFEKSSYEAEVSENSPVGYSVLQVKANDSDLGPNGEIEYTIHQASD-PVPKMLQIERSTGIISVKGPLDREEISSFKFHVIARDKGPSPKSSTTYVSIEVTDQNDNAPAVEIRGIGLRTHSDGVANISEDMPVGTAVALVQVSDKDEGE-NAVVTCVVAGDVPFQLRPAGDSSVDNKKKYFLQTTTPLDYERI---RDYRVEIVAVDSG-NPALSSTNSLRVQVTDTNDNSPIFSPPLFEVEFAEENQPGEKVLDVIALDADSGTNAELVYSIIADSSTRGLFEIDPSSGEVRARSPLDREHKERYEFRVTAADKGVPS--HRGTATVVIKVLDRNDNDPKFMLSSYSFSVLENMPPLSPVGMVTVLDMDKGENAQVQLSVEPDVGNFVVQNGT-GTILSSISFDREKESSYTFRLKAV---DGGEPPRSSYVGVTINVLDENDNAPVVTK-PSNSSFRRLSPLAAPDSVVEVVEAE------------DIDYGSNAELVYSIA----GGNPHELFYISPSDGEIKLTKELTRKHGGLHRLVVKVSDRGKPSRHAIALVHI 773
BLAST of Protocadherin gamma vs. Ensembl Cavefish
Match: pcdh1a (protocadherin 1a [Source:ZFIN;Acc:ZDB-GENE-091116-32]) HSP 1 Score: 224.557 bits (571), Expect = 3.018e-59 Identity = 222/797 (27.85%), Postives = 367/797 (46.05%), Query Frame = 3
Query: 210 DSSSLSFGTIKYWIKENQPPGLVVGNLLDNLPYKQYFISPGYHFVLQKESEEFFSLKPGSSMLTTSKLIDLESLCGSSDCYNGTK----EFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQ---ETSTYFHFSVSKDGK---PILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKD--KTSRLQFIIVPTINVEIAKTFAIS-DQGIIYLIKHLDYETAPKYEIPVRVTD---GEFSSNGRVEVVIIDVNDCAPQFTLNPENLV--------ISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSV-IICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKY-FISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMV 2522
DS + + G I Y ++E QPP ++G+L + Q G+ + L+ + + TT ID E+L DC K EF+V + Q + + I V+D+NDN P F + T +++E + G + +P+A D+D N + Y L E S F ++ D P LI++ LD E D++ L + A + PSR +++L + +VI D NDN P+F +S Y + EN + + +LQ+KA D D +++ I + + K I GII + LD E ++ V D SS V + + D ND AP + L ISE+ T + + V D+D ++ + C +++ + KK + +D ++I R + V I+ D G N ++T ++ + V D NDNSP F+ + V E +P ++DV A D D G N+++ Y I+D + + F+ID +SG++ LDRE ++ Y+ V A D + H TATV I V+D ND P+ S +FSV EN P + +G + D D G+N + ++ P + + T G++L+ +SFDRE S F L+ G E SS V I +LDENDN+P ++ P + S D + V + E D+D G N ++ +S+ ++LFY++ ++ IKL + + G + + D+G P R ++ +
Sbjct: 52 DSINSALGGILYHVREEQPPNTLIGSLAAD----QGLPDSGHLYKLEVGAPYLRVDGKTGEIFTTEIPIDRETL---KDCRIKGKPCFLEFEVSVTDLIQNQSPRLIEGRIEVQDINDNTPQFPSPVLTLSVQENAHM-GATFAIPQATDRDTER-NGVLKYDLSAGPEASALFSLQMANDRGEKLPQLIVLGNLDRELKDSYDLTINAVDGGTPSRYSSAL-LRVVITDANDNAPQFEKSSYEAEVSENSPVGYSVLQVKANDSDLGPNGEIEYTIHQASD-PVPKMLQIERSTGIISVKGPLDREEISSFKFHVIARDKGPSPKSSTTYVSIEVTDQNDNAPAVEIRGIGLRTHSDGVANISEDMPVGTAVALVQVSDKDEGE-NAVVTCVVAGDVPFQLRPAGDSSVDNKKKYFLQTTTPLDYERI---RDYRVEIVAVDSG-NPALSSTNSLRVQVTDTNDNSPIFSPPLFEVEFAEENQPGEKVLDVIALDADSGTNAELVYSIIADSSTRGLFEIDPSSGEVRARSPLDREHKERYEFRVTAADKGVPS--HRGTATVVIKVLDRNDNDPKFMLSSYSFSVLENMPPLSPVGMVTVLDMDKGENAQVQLSVEPDVGNFVVQNGT-GTILSSISFDREKESSYTFRLKAV---DGGEPPRSSYVGVTINVLDENDNAPVVTK-PSNSSFRRLSPLAAPDSVVEVVEAE------------DIDYGSNAELVYSIA----GGNPHELFYISPSDGEIKLTKELTRKHGGLHRLVVKVSDRGKPSRHAIALVHI 809
BLAST of Protocadherin gamma vs. Ensembl Cavefish
Match: ENSAMXT00000037053.1 (pep primary_assembly:Astyanax_mexicanus-2.0:8:9197095:9222047:1 gene:ENSAMXG00000016031.2 transcript:ENSAMXT00000037053.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 202.216 bits (513), Expect = 6.459e-53 Identity = 197/699 (28.18%), Postives = 326/699 (46.64%), Query Frame = 3
Query: 237 IKYWIKENQPPGLVVGNLLDNLPYKQYFISPGYHFVLQKESEEFFSLKPGSSMLTTSKLIDLESLCGSSD-CYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTY-FHFSVSKDGK--PILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDK--TSRLQFIIVPTINVEIAKTFAI-SDQGIIYLIKHLDYETAPKYEIPVRVTDG-----EFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHT-H----QQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRI------NESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTN-GSLLTKVSF---DRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSI 2252
+Y ++E Q PG VG++ +L ++ ++ E+F + S L ++ID E +C SS CY + +V++D I +R++I+ DVNDN P F + + I E PG L A D D+ +N+ +Y L + + DG P L++ K LD ET D+ RL+L A + P + +L + I I D+NDN P F QS+ RV +LEN + + +L ATD D + F+ I F++ S G I + +DYE Y+I DG E S N +VE I DVND P+ TL + ISE+ T T++ I D DS +G + SP + S + + + +DR+ + ++V++ ++ T +++ D NDN+P F+ + Y V + EN P P++ VSA+D D G N+++ Y I T H Y I+ +G I ++S+D E+ + +++ V D H+S TVH+ VID ND +P I ++S +V + P+G ++ K++ D D G N ++F I + +F + N G L T D++ + +S + V+D G+ S T+V I + E + I +PD ++ + TD ++
Sbjct: 35 FRYSVQEEQKPGSFVGDIAKDLGLTPQRLTERKVRIISDS--EYFEINAASGALVIREIIDRERMCESSAACY------LHLQIVLQDPLEIHRVRVDIL--DVNDNAPQFPARNSSLEISEAA-APGTRFRLESARDPDVG-VNSLRTYQLAPSDCFSLRVETKSDGSKFPELVLEKALDRETQDSFRLLLTAVDGGQPEKSGTTL-LLIKILDVNDNAPVFDQSVKRVSLLENSPVGTIVAKLNATDADSGMNGEVTFLFGKYTPNRIHNLFSVDSKTGEIRVTGEVDYEQTSVYDITFEARDGGTPAMEGSCNVKVE--ITDVNDNTPEVTLTSLSSPISEDAKTGTVIALISAKDLDSD--KNGQLTLKVSPGLPFKL-----KSAFGEHYTLVTDGRLDRETVP---EYTVVVTATDAGTPPLSSQKTFVVSLSDVNDNAPLFSQSSYSVDIPENNSPGTPIVAVSASDPDLGDNARLTYSILASTIHGSPVSSYVYINPENGNIFTMRSIDYEQMNAFKIEVQVHDAGTPP--HSSNVTVHVFVIDQNDNSPVILYPAHSDDSGLQLTVPRSAPVGHLVNKIVGFDPDSGHNA-WLFYSITGDDAAFFRIGANTGELRTTRKLADEDQDGRERSAYSFVVVVQDNGQP---SKSTSVPITVSVEEKS---IDAVPDSHKPFSRKVSGMTDVTL 699 HSP 2 Score: 120.168 bits (300), Expect = 5.144e-27 Identity = 123/481 (25.57%), Postives = 210/481 (43.66%), Query Frame = 3
Query: 1152 RVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQ---YFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIP-------SAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKS-NQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADIPPRLIDQN 2561
RV V I+DVND APQF +L ISE T D D + + + +P+D + E S+ +K + L + +DR+ + F +++ G + T + + +LD NDN+P F + V + EN + ++ATD D G+N ++ + +T + F +D +G+I +D E+ Y +T A D + + V + + DVND P + + + + E+ GTVI + A D D +NG+ + P SAF ++ L+T+G L DRE++ + +++ +T D G LSS+ + + D NDN+P S + S+ + + S +PI + SD D G N ++ +S+ I + Y+N I RS N F + + D G+PP ++ + V +IDQN
Sbjct: 120 RVRVDILDVNDNAPQFPARNSSLEISEAAAPGTRFRLESARDPDVGV--NSLRTYQLAPSDCFSLRV-ETKSDGSKFPELVLEKALDRETQDS---FRLLLTAVDGGQPEKSGTTLLLIKILDVNDNAPVFDQSVKRVSLLENSPVGTIVAKLNATDADSGMNGEVTFLFGKYTPNRIHNLFSVDSKTGEIRVTGEVDYEQTSVYDITFEARDGGTPAME--GSCNVKVEITDVNDNTPEVTLTSLSSPISEDAKTGTVIALISAKDLDSDKNGQLTLKVSPGLPFKLKSAFGEHYTLVTDGRL------DRETVPE--YTVVVTATDAGTP-PLSSQKTFVVSLSDVNDNAPLFS---------------QSSYSVDIPENNSPGTPIVAVSASDPDLGDNARLTYSILASTIHGSPVSSYVYINPENGNIFTMRSIDYEQMNAFKIEVQVHDAGTPPHSSNVTVHV-------FVIDQN 561 HSP 3 Score: 105.145 bits (261), Expect = 2.445e-22 Identity = 143/587 (24.36%), Postives = 241/587 (41.06%), Query Frame = 3
Query: 849 ITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDK--TSRLQFIIVPT--INVEIAKTFAISDQGIIYLIKHLDYETAPKYEIPVRVTDG---EFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSER--------TKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGK---IIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAF------SHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSW--QQSDGNR---FLVTLIAKDKGSPPRETSKVIMV 2522
+ + I D+NDN P+F + I E + A D D S + + P+ ++ + S + L K LD ET + + + DG E S + + I+DVND AP F + + + + EN+ T++ + D DS N + F + R +K I + E+D +Q + + + G + V + + D NDN+P+ TLT + E+ K + +SA D D N Q+ +S FK+ G+ ++ LDRE Y V V ATD + +S T + + DVND AP ++S + + EN GT I + A+D D+G N + ++++ S S+ + NG++ T S D E ++ F + + V D G H SS V + ++D+NDNSP I + P +SD+ + +TV ++ + D D G N + Y I+ F + ++ R + DG + ++ +D G P + TS I V
Sbjct: 121 VRVDILDVNDNAPQFPARNSSLEISEAAAPGTRFRLESARDPDVGVNSLRTYQLAPSDCFSLRVETKSDGSKFPELVLEKALDRETQDSFRLLLTAVDGGQPEKSGTTLLLIKILDVNDNAPVFDQSVKRVSLLENSPVGTIVAKLNATDADSGM------------NGEVTFLFGKYTPNRIHNLFSVDSKTGEIRVTGEVDYEQTS---VYDITFEARDGGTPAMEGSCNVKVEITDVNDNTPEVTLTSLSSPISEDAKTGTVIALISAKDLDSDKNGQLTLKVSPGLP---FKLKSAFGEHYTLVTDGRLDRETVPEYTVVVTATDAGTPPL--SSQKTFVVSLSDVNDNAPLFSQSSYSVDIPENNSPGTPIVAVSASDPDLGDNARLTYSILASTIHGSPVSSYVYINPENGNIFTMRSIDYEQMN--AFKIEVQVHDAGTPPH-SSNVTVHVFVIDQNDNSPVI-LYP------AHSDD--SGLQLTVPRSAPVGHLVNKIVGFDPDSGHNAWL-----FYSITGDDAAFFRIGANTGELRTTRKLADEDQDGRERSAYSFVVVVQDNGQPSKSTSVPITV 670 HSP 4 Score: 78.9518 bits (193), Expect = 2.795e-14 Identity = 94/340 (27.65%), Postives = 152/340 (44.71%), Query Frame = 3
Query: 1569 VKENLKPQYPLIDVSATDKDDGVNSQ-----IKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQD------YYQVTVVATD-LAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPS-AFSHYFELLTNGS----LLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADI 2537
V+E KP + D++ KD G+ Q ISD +YF+I+ SG ++ + +DRE+ Y + +V D L I+ +R + ++DVND AP+ ++ + E GT A D D+G N + L PS FS E ++GS L+ + + DRE +Q F L +T D G+ S T + IKILD NDN+P V + + +N + V+K +T D D G NG+V F Y + + + LF ++ I++ + + +T A+D G+P E S + V+ D+
Sbjct: 39 VQEEQKPGSFVGDIA---KDLGLTPQRLTERKVRIISD---SEYFEINAASGALVIREIIDRERMCESSAACYLHLQIVLQDPLEIHRVR--------VDILDVNDNAPQFPARNSSLEISEAAAPGTRFRLESARDPDVGVNSLRTYQLAPSDCFSLRVETKSDGSKFPELVLEKALDRE--TQDSFRLLLTAVDGGQP-EKSGTTLLLIKILDVNDNAP---VFDQSVKRVSLLEN--SPVGTIVAKLNAT----------DADSGMNGEVTFLFGKYTPN-RIHNLFSVDSKTGEIRVTGEVDYEQTSVYDITFEARDGGTPAMEGSCNVKVEITDV 345
BLAST of Protocadherin gamma vs. Ensembl Cavefish
Match: ENSAMXT00000016510.2 (pep primary_assembly:Astyanax_mexicanus-2.0:8:9197095:9222957:1 gene:ENSAMXG00000016031.2 transcript:ENSAMXT00000016510.2 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 202.216 bits (513), Expect = 1.334e-52 Identity = 197/699 (28.18%), Postives = 326/699 (46.64%), Query Frame = 3
Query: 237 IKYWIKENQPPGLVVGNLLDNLPYKQYFISPGYHFVLQKESEEFFSLKPGSSMLTTSKLIDLESLCGSSD-CYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTY-FHFSVSKDGK--PILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDK--TSRLQFIIVPTINVEIAKTFAI-SDQGIIYLIKHLDYETAPKYEIPVRVTDG-----EFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHT-H----QQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRI------NESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTN-GSLLTKVSF---DRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSI 2252
+Y ++E Q PG VG++ +L ++ ++ E+F + S L ++ID E +C SS CY + +V++D I +R++I+ DVNDN P F + + I E PG L A D D+ +N+ +Y L + + DG P L++ K LD ET D+ RL+L A + P + +L + I I D+NDN P F QS+ RV +LEN + + +L ATD D + F+ I F++ S G I + +DYE Y+I DG E S N +VE I DVND P+ TL + ISE+ T T++ I D DS +G + SP + S + + + +DR+ + ++V++ ++ T +++ D NDN+P F+ + Y V + EN P P++ VSA+D D G N+++ Y I T H Y I+ +G I ++S+D E+ + +++ V D H+S TVH+ VID ND +P I ++S +V + P+G ++ K++ D D G N ++F I + +F + N G L T D++ + +S + V+D G+ S T+V I + E + I +PD ++ + TD ++
Sbjct: 35 FRYSVQEEQKPGSFVGDIAKDLGLTPQRLTERKVRIISDS--EYFEINAASGALVIREIIDRERMCESSAACY------LHLQIVLQDPLEIHRVRVDIL--DVNDNAPQFPARNSSLEISEAA-APGTRFRLESARDPDVG-VNSLRTYQLAPSDCFSLRVETKSDGSKFPELVLEKALDRETQDSFRLLLTAVDGGQPEKSGTTL-LLIKILDVNDNAPVFDQSVKRVSLLENSPVGTIVAKLNATDADSGMNGEVTFLFGKYTPNRIHNLFSVDSKTGEIRVTGEVDYEQTSVYDITFEARDGGTPAMEGSCNVKVE--ITDVNDNTPEVTLTSLSSPISEDAKTGTVIALISAKDLDSD--KNGQLTLKVSPGLPFKL-----KSAFGEHYTLVTDGRLDRETVP---EYTVVVTATDAGTPPLSSQKTFVVSLSDVNDNAPLFSQSSYSVDIPENNSPGTPIVAVSASDPDLGDNARLTYSILASTIHGSPVSSYVYINPENGNIFTMRSIDYEQMNAFKIEVQVHDAGTPP--HSSNVTVHVFVIDQNDNSPVILYPAHSDDSGLQLTVPRSAPVGHLVNKIVGFDPDSGHNA-WLFYSITGDDAAFFRIGANTGELRTTRKLADEDQDGRERSAYSFVVVVQDNGQP---SKSTSVPITVSVEEKS---IDAVPDSHKPFSRKVSGMTDVTL 699 HSP 2 Score: 120.168 bits (300), Expect = 4.813e-27 Identity = 123/481 (25.57%), Postives = 210/481 (43.66%), Query Frame = 3
Query: 1152 RVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQ---YFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIP-------SAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKS-NQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADIPPRLIDQN 2561
RV V I+DVND APQF +L ISE T D D + + + +P+D + E S+ +K + L + +DR+ + F +++ G + T + + +LD NDN+P F + V + EN + ++ATD D G+N ++ + +T + F +D +G+I +D E+ Y +T A D + + V + + DVND P + + + + E+ GTVI + A D D +NG+ + P SAF ++ L+T+G L DRE++ + +++ +T D G LSS+ + + D NDN+P S + S+ + + S +PI + SD D G N ++ +S+ I + Y+N I RS N F + + D G+PP ++ + V +IDQN
Sbjct: 120 RVRVDILDVNDNAPQFPARNSSLEISEAAAPGTRFRLESARDPDVGV--NSLRTYQLAPSDCFSLRV-ETKSDGSKFPELVLEKALDRETQDS---FRLLLTAVDGGQPEKSGTTLLLIKILDVNDNAPVFDQSVKRVSLLENSPVGTIVAKLNATDADSGMNGEVTFLFGKYTPNRIHNLFSVDSKTGEIRVTGEVDYEQTSVYDITFEARDGGTPAME--GSCNVKVEITDVNDNTPEVTLTSLSSPISEDAKTGTVIALISAKDLDSDKNGQLTLKVSPGLPFKLKSAFGEHYTLVTDGRL------DRETVPE--YTVVVTATDAGTP-PLSSQKTFVVSLSDVNDNAPLFS---------------QSSYSVDIPENNSPGTPIVAVSASDPDLGDNARLTYSILASTIHGSPVSSYVYINPENGNIFTMRSIDYEQMNAFKIEVQVHDAGTPPHSSNVTVHV-------FVIDQN 561 HSP 3 Score: 104.76 bits (260), Expect = 3.194e-22 Identity = 143/587 (24.36%), Postives = 241/587 (41.06%), Query Frame = 3
Query: 849 ITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDK--TSRLQFIIVPT--INVEIAKTFAISDQGIIYLIKHLDYETAPKYEIPVRVTDG---EFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSER--------TKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGK---IIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAF------SHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSW--QQSDGNR---FLVTLIAKDKGSPPRETSKVIMV 2522
+ + I D+NDN P+F + I E + A D D S + + P+ ++ + S + L K LD ET + + + DG E S + + I+DVND AP F + + + + EN+ T++ + D DS N + F + R +K I + E+D +Q + + + G + V + + D NDN+P+ TLT + E+ K + +SA D D N Q+ +S FK+ G+ ++ LDRE Y V V ATD + +S T + + DVND AP ++S + + EN GT I + A+D D+G N + ++++ S S+ + NG++ T S D E ++ F + + V D G H SS V + ++D+NDNSP I + P +SD+ + +TV ++ + D D G N + Y I+ F + ++ R + DG + ++ +D G P + TS I V
Sbjct: 121 VRVDILDVNDNAPQFPARNSSLEISEAAAPGTRFRLESARDPDVGVNSLRTYQLAPSDCFSLRVETKSDGSKFPELVLEKALDRETQDSFRLLLTAVDGGQPEKSGTTLLLIKILDVNDNAPVFDQSVKRVSLLENSPVGTIVAKLNATDADSGM------------NGEVTFLFGKYTPNRIHNLFSVDSKTGEIRVTGEVDYEQTS---VYDITFEARDGGTPAMEGSCNVKVEITDVNDNTPEVTLTSLSSPISEDAKTGTVIALISAKDLDSDKNGQLTLKVSPGLP---FKLKSAFGEHYTLVTDGRLDRETVPEYTVVVTATDAGTPPL--SSQKTFVVSLSDVNDNAPLFSQSSYSVDIPENNSPGTPIVAVSASDPDLGDNARLTYSILASTIHGSPVSSYVYINPENGNIFTMRSIDYEQMN--AFKIEVQVHDAGTPPH-SSNVTVHVFVIDQNDNSPVI-LYP------AHSDD--SGLQLTVPRSAPVGHLVNKIVGFDPDSGHNAWL-----FYSITGDDAAFFRIGANTGELRTTRKLADEDQDGRERSAYSFVVVVQDNGQPSKSTSVPITV 670 HSP 4 Score: 78.5666 bits (192), Expect = 3.144e-14 Identity = 95/340 (27.94%), Postives = 151/340 (44.41%), Query Frame = 3
Query: 1569 VKENLKPQYPLIDVSATDKDDGVNSQ-----IKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQD------YYQVTVVATD-LAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPS-AFSHYFELLTNGS----LLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADI 2537
V+E KP + D++ KD G+ Q ISD +YF+I+ SG ++ + +DRE+ Y + +V D L I+ +R + ++DVND AP+ ++ + E GT A D D+G N + L PS FS E ++GS L+ + + DRE +Q F L +T D G+ S T + IKILD NDN+P V + + +N + V+K +T D D G NG+V F Y + N LF ++ I++ + + +T A+D G+P E S + V+ D+
Sbjct: 39 VQEEQKPGSFVGDIA---KDLGLTPQRLTERKVRIISD---SEYFEINAASGALVIREIIDRERMCESSAACYLHLQIVLQDPLEIHRVR--------VDILDVNDNAPQFPARNSSLEISEAAAPGTRFRLESARDPDVGVNSLRTYQLAPSDCFSLRVETKSDGSKFPELVLEKALDRE--TQDSFRLLLTAVDGGQP-EKSGTTLLLIKILDVNDNAP---VFDQSVKRVSLLEN--SPVGTIVAKLNAT----------DADSGMNGEVTFLFGKYTPNRIHN-LFSVDSKTGEIRVTGEVDYEQTSVYDITFEARDGGTPAMEGSCNVKVEITDV 345
BLAST of Protocadherin gamma vs. Ensembl Cavefish
Match: pcdh1b (protocadherin 1b [Source:ZFIN;Acc:ZDB-GENE-091015-2]) HSP 1 Score: 202.216 bits (513), Expect = 1.595e-52 Identity = 210/796 (26.38%), Postives = 358/796 (44.97%), Query Frame = 3
Query: 213 SSSLSFGTIKYWIKENQPPGLVVGNLLDNLPYKQYFISPGYHFVLQKESEEFFSLKPGSSMLTTSKLIDLESLCGSSDCYNGTK---EFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFH-FSV-----SKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIV---PTINVEIAKTFAIS-DQGIIYLIKHLDYETAPKYEIPVRVTDG---EFSSNGRVEVVIIDVNDCAPQFTLNPENLV--------ISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSV-IICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKY-FISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMV 2522
S S +I Y ++E QPP +VG+L + Q G+ + L+ + TT ID E+L + + G EF+V + + + I ++D NDN P F + I E Y G +P A DKD N Y L S + FS+ + + P LI++ LD E DT+ L + + P R +++L + I I D NDN P+F +S Y + EN + +LQ+KA D D + Q P+ NV+ + I + GII + +D E P + V+ D SS V + + D ND AP + LV +SE+ T + + V D+D ++ + C + ++S +K + +D ++I + + + I+ D G N ++T ++ + V D NDN+P F+ + Y V E +P ++DV ATD D G N+++ Y I+D + F I+ N+G++ + LDRE ++ Y+ V A D + ++ TATV + V+D ND P+ + +FSV EN P + +G + D D G+N ++ P + T G++L+ +SFDRE S F L+ G + SS + I +LDENDN+P ++ + ++Y + + S ++ + D+D G N ++ +S+ + LF ++ T+ I L + + + + + DKG P R T+ ++ +
Sbjct: 27 SCGSSLASITYQLREEQPPNTLVGSLAAD----QGLPDTGHLYKLEVGGPYLRVDGKTGDIYTTDVPIDRETLKDCRNLFEGDPCFLEFEVSITDLMKGSGPRLIEGRIEIQDENDNTPQFPSPILELAIPENTY-VGAHYSIPVAMDKDAG-SNGIADYKLNSGSDAMNLFSLQVADNTDEKVPQLIVLGNLDREQRDTYDLSIKVIDGGTPPRYSSAL-LRITITDTNDNVPKFERSHYEGEMAENTPVGQSVLQVKANDDDLGANGQVTYSFHQPSPNVQ--RLLHIDHNTGIIQVKGSVDREEVPLLKFSVQARDNGPQAKSSKAMVTITVKDRNDNAPSIRIRGFGLVAHEDGIANVSEDMPVGTPVALVEVSDKDEGE-NAVVTCVVAGDVPFQLRSASASDSTSKRKYFLQTTTPLDYERI---KEYRIEIVAVDSG-NPALSSTNSLKVQVTDMNDNAPVFSPSLYEVDFAEENQPGDKVLDVVATDADSGTNAELLYSIITDSATKGLFDINPNTGEVRVMNQLDREYKERYEFHVEAADKGVPSLK--GTATVVVRVLDRNDNDPKFMLNGYSFSVLENMPPLSPVGMVTVIDADKGENAHVQLSVEPENGKFVIQNGT-GTILSSISFDREKESTYTFRLKAV---DGGDPPRSSYVGITINVLDENDNAPYVTKPSN--SSYKF-----------LQPLTSPDTRVEKVDAEDIDTGLNAELVYSI----TGGNPHGLFRISSTDGEITLAKEFTRKHNGLHRLVVKVSDKGKPSRHTTALVHI 785
BLAST of Protocadherin gamma vs. Ensembl Sea Lamprey
Match: ENSPMAT00000006996.1 (pep scaffold:Pmarinus_7.0:GL476780:2096:143714:1 gene:ENSPMAG00000006222.1 transcript:ENSPMAT00000006996.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 182.956 bits (463), Expect = 1.302e-46 Identity = 214/756 (28.31%), Postives = 338/756 (44.71%), Query Frame = 3
Query: 219 SLSFGTIKYWIKENQPPGLVVGNLLDNLPYKQYFISPGYHFVLQKESEEFFSLKPGSSMLTTSKLIDLESLCGSSDCYNGTKEFQVVALVMRD---KQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETS---TYFHFSVSKDGKPILIIIKELDAETI--DTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKT---SRLQFIIVPTINVEIAKTFAISDQ-GIIYLIKHLDYETAPKYEIPVRVTDG-----EFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQIN----GDRRFSVIICNDMGIN-NRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFEL-LTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEE-IHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAI 2414
SL + W EN G V +L F YHF + + FSL P S +++ + +D E+ T F V + RD ++ +RIN++ DVNDN P F+ SY +E + + RA D+D S NNQI+YS+ TS +YF +VS G ++ + + LD E I T L ++A + P + I V D+ NDN P F ++ Y + I EN+ +L + ATD D++ +L I ++E + F I+ + G I LD E +Y + VR DG + + V + ++DVND P + P + I ENT T + + D D + + + PN R + T ++DR+ +N R V+ D G R TA+ TVT+ + D NDN P F Y ++V E L L V+ATD D+G N + Y ++ + F++D +G I + LDRE YQ+ +VATD + +ST T+ + V+DVND AP + + + S+ E+ +V+ L TD D G N + F + F + +G + T VS DRE ++ +SL I D G + T + + +LD NDN P +Y ++V + + + I +D+D+G NG+V + + IS + F +NV+ I
Sbjct: 31 SLPLYNVSVW--ENATLGTSVVQVLATDLDAGVFGQVSYHF---SDDSDKFSLDPASGLISVAAALDFEA----------TPRFTVTVMA-RDGGGQETAGRVRINLL--DVNDNTPVFQRDSYVGTARENDNSLTPVVRV-RATDED-SPPNNQITYSILPTSAYSSYFSITVSG-GYGVVTLARALDYEKIPGGTISLTIMALDGGSPPLNSTVTAIVEVFDE-NDNSPIFDRNSYSIAIPENILAGATVLYVNATDGDQSPEYGQLSLIY----SLEGSTQFRINARSGDITSTTLLDREAVSQYILIVRAVDGGDGNDQKTGIATVNITLLDVNDNDPAWRDLPYAVTIVENTPGGTDIFTVSAADPDLNENGTLVYAID-PPNPFYRINAASGKIRTT-------GLQLDREDLNPISFASMRSIVVSGADRGSPPRRATASATVTVLLQDVNDNEPSFVGLPYALQVLEGLPANSTLFQVTATDPDEGANGNVTYSMTAALPRPDFQLDAATGLITTLVQLDREAVAAYQLRLVATDRGTPAL--SSTTTLSLVVLDVNDNAPTFHPARSAVSLMESVARDSVVISLNCTDADSGLNAELSFFITGGNQDGQFSVGFRDGLVRTVVSLDRE--TKASYSLVIEAIDNGPAGSRRTGTTTLDVLVLDVNDNRPLF-----LEGSYE----------VSVPENVTRGAIILQVQATDIDEGINGRVWYRI----ISGNQDGNFLVNVSSGLI 729 HSP 2 Score: 139.813 bits (351), Expect = 2.003e-33 Identity = 146/570 (25.61%), Postives = 241/570 (42.28%), Query Frame = 3
Query: 873 NDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAI-SDQGIIYLIKHLDYETAPKYEIPVRVTDGEF-SSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERT--------KKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKF----SLRITVRDIGEEIHLSSKTA-VCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADI 2537
NDN P FS +Y V + EN L ++Q+ ATD D F V + + F++ G+I + LD+E P++ + V DG + GRV + ++DVND P F + EN + T + + D+DS PN+ + + I ++ + + L + +D ++I G I+ D G + +T T + V D NDNSP F Y + + EN+ ++ V+ATD D I F+I+ SG I LDRE Y + V A D + T ATV+I ++DVND P + ++ EN P GT I + A D D+ +NG ++ + P + + T + DRE L+ + F S+ ++ D G ++ +A V + + D NDN P +P ++ V + NS +F T +D D+G NG V +SM + F L+ I + + + L+A D+G+P ++ + + D+
Sbjct: 24 NDNRPIFSLPLYNVSVWENATLGTSVVQVLATDLDAGV---FGQVSYHFSDDSDKFSLDPASGLISVAAALDFEATPRFTVTVMARDGGGQETAGRVRINLLDVNDNTPVFQRDSYVGTARENDNSLTPVVRVRATDEDS------------PPNNQITYSILPTSAYSSYFSITVSGGYGVVTLARALDYEKIPGGTISLTIMALDGG-SPPLNSTVTAIVEVFDENDNSPIFDRNSYSIAIPENILAGATVLYVNATDGDQSPEYGQLSLIYSLEGSTQFRINARSGDITSTTLLDREAVSQYILIVRAVDGGDGNDQKTGIATVNITLLDVNDNDPAWRDLPYAVTIVENTPGGTDIFTVSAADPDLNENGTLVYAIDPPNPFYRINAASGKIRTTGLQLDREDLNPISFASMRSIVVSGADRGSPPRRATASATVTVLLQDVNDNEPSFVGLP---------------YALQVLEGLPANSTLFQVTATDPDEGANGNVTYSMT----AALPRPDFQLDAATGLITTLVQLDREAVAAYQLRLVATDRGTPALSSTTTLSLVVLDV 558 HSP 3 Score: 123.635 bits (309), Expect = 1.866e-28 Identity = 207/829 (24.97%), Postives = 350/829 (42.22%), Query Frame = 3
Query: 225 SFGTIKYWIKENQPP---GLVVGNLLDNLPYKQYFISPGYHFVLQKESEEFFSLKPGSSMLTTSKLIDLESLCGSSDCYNGTKEFQVVALVMRD------KQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVS-KDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDK----TSRLQFIIVPTINVEIAKTFAISDQGIIYLIKHLDYETAPKYEIPVRVTDG-EFSSNGRVE-----VVIIDVNDCAPQFTLNPENLVISENTLTKTLLG--NIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNS-----ERTK-KINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQY--PLIDVSATDKDDGV--NSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTF--SVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAF----------SHYFELLT--NGSLLTKVSFDRESLSQVKFSLRITVRDIG--EEIH-LSSKTA--VCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTF---SDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKL----KRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADI 2537
+FG Y + + P G+ V N+ + P + Y V + F + G+ +LT K +D E G ++ + D ++ +++ V DVND P+F SY I PG I A D+D S +N ++ YS+ + F +S DG + ELD ET + L ++A + P ++L + + + D++DN+P F + E + + +++A+D ++ + LQ N E A +A S G++Y+ + LD E +Y + + V D + S R + V I+D ND +P F+ I EN+ T+L N +Y D+ D G+ N + + + +S +R + +++ L Q +DR+ I G R I+ D G R AT + +TVLD NDN+P F +T V EN P +I V A D+D GV ++Y I+ + F IDE++G I+ + +D E + Y + VVATD A TA+ + V N+ +++ SL + ++ E GTV+ ++ A ++ + S EL+ G + T+ + DRE+ + L + RD G E I L++K V + + DENDNSP+ S T+ + + +P T +D D G NG V+ + + Q + E + + K + + L ++A D GSPPR T+ + V D+
Sbjct: 1171 AFGAATYEVLLTEGPSTAGVAVANVTASDPDEGDNARVVYAIV-SGNTAATFGIDNGTGVLTAVKALDFEVSAG----------LYLLVVTATDQPRDPARRLTSTATVSVHVADVNDVTPWFLR-SYEGPIDVSEGQPGPRIATFMASDQD-SGLNGELEYSIIDGDPRNEFVISPADGDLRVRRYVELDRETQAFYNLTIMAKDMGTPPL-NSTLTVGVRVLDVHDNDPVFLNLPANASLSEAAAVLAIVSRVRASDANEGRNCAALLQHSPTSFCNGERA-FYADSQTGLVYVNRPLDRERVAEYRLTLTVRDNPDNPSYARKDSDIMIVTILDENDNSPVFSQVTYEAEIPENSPNGTVLTVLNGPIYASDA---DFGV-------NATLAYSLLGGSSAYFLIDRDRGNVSMALGQGLDREGIPGGRLELTILVQDGG---RRNATVRLGVTVLDVNDNTPTFNVTSQTAHVLEN-SPAVGTSVIVVKAMDRDLGVCDAGTVRYSIASGGNDT-FGIDESTGLIVTVAPIDYETRPEYLLMVVATDQA----PPFHTASCELRVSLQNELDEKLSFSLAAYQAALSEAAVPGTVVVRVAAPQMKAPPKLPLPLAILVQKWHEDKRHKQQESDNAELIAALQGEITTQAALDREATD--SYMLTVLSRDGGPREAIAVLTNKPGAYVYVNVTDENDNSPEFEA-----------------GSATLVEVRESAAPGTLLTVLHATDRDAGSNGTVSARAHTHTGTRIPPQYILIIQNESGVTIVDVAKADFVEKTSQFILFRIVALDGGSPPRSTTFNLSVIVLDV 1946 HSP 4 Score: 123.25 bits (308), Expect = 2.066e-28 Identity = 168/633 (26.54%), Postives = 275/633 (43.44%), Query Frame = 3
Query: 519 RINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDK--TSRLQFIIVPTINVEIAKTFAISDQ-GIIYLIKHLDYETAPKYEIPVRVT--DG---EFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVY------DQDSAYVD-SGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMG-INNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKI--IGIQSLDREK------QDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFEL-LTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAF 2342
R++I + + NDN P F Y ++ E G S+ A D D + Q+SY + S F + ++ + LD E T R + ++ + TA + I + D+NDN P F + Y EN +++++ATD+D +++ + I+PT + +S G++ L + LDYE P I + + DG +S V + D ND +P F N ++ I EN L G V+Y DQ Y S I EGS +F I + + T +DR+ ++ + ++ D G N++ T TV +T+LD NDN P + Y V + EN + VSA D D N + Y I +++I+ SGKI G+Q LDRE + V D R T++ATV + + DVND P V E P + + ++ ATD D G NG +++ + F+L G + T V DRE+++ + LR+ D G LSS T + + +LD NDN+P + ++++ ++ + +S + +D D G N +++F
Sbjct: 15 RVHITLINENDNRPIFSLPLYNVSVWENAT-LGTSVVQVLATDLDAGVF-GQVSYHFSDDSDKFSLDPASG---LISVAAALDFEA--TPRFTVTVMARDGGGQETAGR-VRINLLDVNDNTPVFQRDSYVGTARENDNSLTPVVRVRATDEDSPPNNQITYSILPTSAYSSYFSITVSGGYGVVTLARALDYEKIPGGTISLTIMALDGGSPPLNSTVTAIVEVFDENDNSPIFDRNSYSIAIPENILA----GATVLYVNATDGDQSPEYGQLSLIYSLEGS----TQFRINARSGDITS------TTLLDREAVS--QYILIVRAVDGGDGNDQKTGIATVNITLLDVNDNDPAWRDLPYAVTIVENTPGGTDIFTVSAADPDLNENGTLVYAID--PPNPFYRINAASGKIRTTGLQ-LDREDLNPISFASMRSIVVSGADRGSPPRRATASATVTVLLQDVNDNEPSFVGLPYALQVLEGLPANSTLFQVTATDPDEGANGNVTYSMTAALPRPDFQLDAATGLITTLVQLDREAVA--AYQLRLVATDRGTPA-LSSTTTLSLVVLDVNDNAPTF---------------HPARSAVSLMESVARDSVVISLNCTDADSGLNAELSF 602 HSP 5 Score: 116.701 bits (291), Expect = 2.198e-26 Identity = 155/605 (25.62%), Postives = 257/605 (42.48%), Query Frame = 3
Query: 333 YHFVLQKESEEFFSL--KPGSSMLTTSKLIDLESLCGSSDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQIS--YSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPS-RPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKD--KTSRLQFIIVP-----TINVEIAKTFAISDQGI-----------IYLIKHLDYETAPKYEIPVRVTDGEFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQ-EIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVS--FDRESLS 2069
Y + +FS+ G ++T ++ +D E + G GT ++AL + + V D NDN P F SY+ I E I G ++ A D D S Q+S YSL E ST F + ++ G + LD E + + LI+ A + + + T + I + D+NDN+P + Y V I+EN I + A D D + L + I P IN K I G+ ++ + A + P R T ++ V V++ DVND P F P L + E + L + D D E G+ +M + + + + ++DR+ + + ++ D G ++T T++L VLD NDN+P F V + E++ +I ++ TD D G+N+++ +FI+ F + G + + SLDRE + Y + + A D R T T T+ + V+DVND P E SV EN G +I ++ ATD D G NG+ + +I F + + L+++ + DRE+++
Sbjct: 168 YSILPTSAYSSYFSITVSGGYGVVTLARALDYEKIPG------GTISLTIMALDGGSPPLNSTVTAIVEVFDENDNSPIFDRNSYSIAIPENILA-GATVLYVNATDGDQSPEYGQLSLIYSL-EGSTQFRIN-ARSGD--ITSTTLLDREAVSQYILIVRAVDGGDGNDQKTGIATVNITLLDVNDNDPAWRDLPYAVTIVENTPGGTDIFTVSAADPDLNENGTLVYAIDPPNPFYRINAASGK---IRTTGLQLDREDLNPISFASMRSIVVSGADRGSPPRRAT-----ASATVTVLLQDVNDNEPSFVGLPYALQVLEGLPANSTLFQVTATDPD--------EGANGNVTYSMTAALPRPDFQLDAATGLITTLVQLDREAVAAYQLR--LVATDRG-TPALSSTTTLSLVVLDVNDNAPTFHPARSAVSLMESVARDSVVISLNCTDADSGLNAELSFFITGGNQDGQFSVGFRDGLVRTVVSLDRETKASYSLVIEAIDNGPAGSRRTGTTTLDVLVLDVNDNRPLFLEGSYEVSVPENVTRGAIILQVQATDIDEGINGRVWYRIISGNQDGNFLVNVSSGLISRGATPLDRETVA 742 HSP 6 Score: 111.694 bits (278), Expect = 7.393e-25 Identity = 183/804 (22.76%), Postives = 319/804 (39.68%), Query Frame = 3
Query: 249 IKENQPPGLVVGNLLDNLPYKQ---YFISPGYHFVLQKESEEFFSLKP--GSSMLTTSKLIDLESLCGSSDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLIN-NQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTI---------------NVEIAKTFAISDQGIIYLIKHLDYETAPKYEIPVRVTDG---------EFSSNGRVEVVIIDVNDCAPQFTLNPENLV-ISENTLTKTLLGNIVVYDQDSA---YVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSV--IICNDMGINNRXXXXXXXXXXXXXXNDNSPQF-TLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSG--KIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFS-MKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSP-PRETSKVIMVQFADI 2537
I EN P G V+ +L+ Y + ++ + L S +F + G+ + + +D E + G ++ LV + +R+ + V DVNDN P F S T ++ E G S+ + +A D+DL + + + YS+ F + + +++ + +D ET + L+++A +Q P TAS + + + + D + FS + Y+ + E ++++ A +L + + N E+ QG I LD E Y + V DG V V + D ND +P+F LV + E+ TLL + D+D+ V + G+ I +N S + + D + +F + I+ D G R T + + NDN P F + Y V V E P + V ATD D G N Q+ + I + I + G ++ ++DRE + Y + VVA D + + +A V + V DVND P + T SV E+ +G+ + + AT+ G N K+ + I + F + L+T + S +F+L D G L + + +++LD ND+ P F+ N + N T+ V + I D D+G NG V +S + + + + F +N T I R+ + + + L+A D+G P E+++ + V DI
Sbjct: 1509 IPENSPNGTVL-TVLNGPIYASDADFGVNATLAYSLLGGSSAYFLIDRDRGNVSMALGQGLDREGIPGG--------RLELTILVQDGGRRNATVRLGVTVLDVNDNTPTFNVTSQTAHVLENSPAVGTSVIVVKAMDRDLGVCDAGTVRYSIASGGNDT-FGI-DESTGLIVTVAPIDYETRPEYLLMVVATDQAPPFH-TASCELRVSLQNELDEKLSFSLAAYQAALSEAAVPGTVVVRVAAPQMKAPPKLPLPLAILVQKWHEDKRHKQQESDNAELIAAL----QGEITTQAALDREATDSYMLTVLSRDGGPREAIAVLTNKPGAYVYVNVTDENDNSPEFEAGSATLVEVRESAAPGTLLTVLHATDRDAGSNGTVSARAHTHTGTRIPPQYILIIQNES------GVTIVDVAKADFVEKTSQFILFRIVALDGGSPPRSTTFNLSVIVLDV-NDNVPIFLSPGGYAVSVVELGAPGTLVASVWATDADAGPNGQVTFRIESGGGDK-LSIGPSDGIIRVAPGANIDRETRAAYTLMVVAVDRGNPPL--SGSAIVRVLVDDVNDERPAFLAPVQTVSVLESLSVGSFVATVKATENYKGHNTKYTYK-IAGIGKNAFTVHATSGLVTSTRLLK---SYERFNLTAVATDHGRP-PLWGQAGLYVEVLDVNDHRPV------FVLPPNGTVVNITEVMPVVIR-------IVEVLAVDGDEGQNGAVRYSFLHAGGVGSRDWESFRINATSGIISTARALDRESQAVYSLILLASDQGQPVSYESTQPLQVVLDDI 2268 HSP 7 Score: 99.3673 bits (246), Expect = 4.746e-21 Identity = 99/348 (28.45%), Postives = 157/348 (45.11%), Query Frame = 3
Query: 1524 NDNSPQFTLTDYVVRVKENLK-PQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDRE-KQDYYQVTVVATDLAINEIRH-TSTATVHIHVIDVNDCAPRINESL-NTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELL-TNGSLLTK--VSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISL-KSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPP---RETSKVIMVQFAD 2534
NDN+P F Y V + E + +V+A+D D+G N+++ Y I F ID +G + +++LD E Y + V ATD + R TSTATV +HV DVND P S V E QP G I +A+D D G NG+ +++I + F + +G L + V DRE +Q ++L I +D+G L+S V +++LD +DN P +P N S + VS+ + SD ++G N A ++ P S + FY + + + R + + +TL +D P R+ S +++V D
Sbjct: 1166 NDNAPAFGAATYEVLLTEGPSTAGVAVANVTASDPDEGDNARVVYAIVSGNTAATFGIDNGTGVLTAVKALDFEVSAGLYLLVVTATDQPRDPARRLTSTATVSVHVADVNDVTPWFLRSYEGPIDVSEGQP-GPRIATFMASDQDSGLNGELEYSIIDGDPRNEFVISPADGDLRVRRYVELDRE--TQAFYNLTIMAKDMGTP-PLNSTLTVGVRVLDVHDNDPVFLNLP-----ANASLSEAAAVLAIVSRVRA----------SDANEGRN--CAALLQHSPTSFCNGERAFYADSQTGLVYVNRPLDRERVAEYRLTLTVRDNPDNPSYARKDSDIMIVTILD 1492 HSP 8 Score: 95.1301 bits (235), Expect = 8.661e-20 Identity = 134/504 (26.59%), Postives = 227/504 (45.04%), Query Frame = 3
Query: 528 IIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAE-TIDTHRLILIAWNQ--NYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPI-LENVELNHQILQLKATDKDK--TSRLQFIIVPTINVEIAKTFAISDQ-GIIYLIKH--LDYETAPKYEIPVRVTD---GEFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSER-----TKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDV-----SATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKI---IGIQSLDREK--QDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQP-IGTVIGKLIATDCDIG 1955
I + D NDN P F A+Y + E G ++ A D D N ++ Y++ +T F + +G +L +K LD E + + L++ A +Q + R T++ +++ + D+ND P F +S Y PI + + +I A+D+D L++ I I+ + F IS G + + ++ LD ET Y + + D +S V V ++DV+D P F P N +SE ++ + D + G C + F N ER ++ +Y+N+ +DR+++ R + N + + + +T+LD NDNSP F+ Y + EN P ++ V A+D D GVN+ + Y + + YF ID + G + +G Q LDRE ++T++ D R +T + + V+DVND P N + T V EN P +GT + + A D D+G
Sbjct: 1160 IRITDENDNAPAFGAATYEVLLTEGPSTAGVAVANVTASDPDEG-DNARVVYAIVSGNTAATFGI-DNGTGVLTAVKALDFEVSAGLYLLVVTATDQPRDPARRLTSTATVSVHVADVNDVTPWFLRS-YEGPIDVSEGQPGPRIATFMASDQDSGLNGELEYSI---IDGDPRNEFVISPADGDLRVRRYVELDRETQAFYNLTIMAKDMGTPPLNSTLTVGVRVLDVHDNDPVFLNLPANASLSEAAAVLAIVSRVRASD-----ANEGRNCAALLQHSPTSF----CNGERAFYADSQTGLVYVNRPLDRERVAEYRLTLTVRDNPDNPSYARKDSDIMIVTILDENDNSPVFSQVTYEAEIPEN-SPNGTVLTVLNGPIYASDADFGVNATLAYSLLGGS-SAYFLIDRDRGNVSMALG-QGLDREGIPGGRLELTILVQDGG----RRNATVRLGVTVLDVNDNTPTFNVTSQTAHVLENSPAVGTSVIVVKAMDRDLG 1641 HSP 9 Score: 88.9669 bits (219), Expect = 6.249e-18 Identity = 128/483 (26.50%), Postives = 214/483 (44.31%), Query Frame = 3
Query: 822 PSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVE-LNHQILQLKATDKDK--TSRLQFIIVPTINVEIAKTFAISD-QGIIYLIKHLDYE-TAPKYEIPVRVTDG------EFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECR--EGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFS--VIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHT---HQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHI-HVIDVNDCAPRINESLNTFSVYENQPIGTVI----GKLIATDCDIGQNGKFIFTLIPSAFSHYFEL---LTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISV 2192
P++ T S + I I D NDN P F + Y V + E + + A+D D+ +R+ + IV + A TF I + G++ +K LD+E +A Y + V TD +S V V + DVND P F + E + + + DQDS ++ +E +G P + F I+ + + ++ Y+ E+DR+ + F I+ DMG +T TV + VLD +DN P F + E + V A+D ++G N S + ++ F D +G + + LDRE+ Y++T+ D N + + I ++D ND +P ++ + EN P GTV+ G + A+D D G N ++L+ + S YF + N S+ DRE + + L I V+D G ++ + + +LD NDN+P +V
Sbjct: 1151 PAQATTS--VLIRITDENDNAPAFGAATYEVLLTEGPSTAGVAVANVTASDPDEGDNARVVYAIV---SGNTAATFGIDNGTGVLTAVKALDFEVSAGLYLLVVTATDQPRDPARRLTSTATVSVHVADVNDVTPWFLRSYEGPIDVSEGQPGPRIATFMASDQDSG-LNGELEYSIIDGDPRN--EFVISPADGD--LRVRRYV--ELDRET----QAFYNLTIMAKDMG-TPPLNSTLTVGVRVLDVHDNDPVFLNLPANASLSEAAAVLAIVSRVRASDANEGRNCAALLQHSPTSFCNGERAFYADSQTGLVYVNRPLDRERVAEYRLTLTVRDNPDNPSYARKDSDIMIVTILDENDNSPVFSQVTYEAEIPENSPNGTVLTVLNGPIYASDADFGVNATLAYSLLGGS-SAYFLIDRDRGNVSMALGQGLDREGIPGGRLELTILVQDGGRR---NATVRLGVTVLDVNDNTPTFNV 1612 HSP 10 Score: 85.5001 bits (210), Expect = 6.805e-17 Identity = 132/545 (24.22%), Postives = 216/545 (39.63%), Query Frame = 3
Query: 534 VEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETID---------THRLIL---IAWNQNYPSRPTASLPITIVIDDINDNEPRF-SQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAIS---DQGIIYLI--KHLDYETAPKYEIPVRVTD---GEFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVI-ICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTL--TDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKY-FIS----DHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRI------NESLNTFSVYENQPIGTVIGKLI-ATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRE 2060
V D NDN P F+ S T PG + + A D+D N +S + H + ILII E +D T + IL +A + P R T + +++++ D+NDN P F S Y V ++E + + ATD D Q T +E +S GII + ++D ET Y + V D S + V V++ DVND P F + + + E+ + + + + + G +A T T+ + Y RF++ + D G + + VLD ND+ P F L VV + E + +++V A D D+G N ++Y F+ + F+I+ SG I ++LDRE Q Y + ++A+D + + ST + + + D++D P +FS+ E+ P GT +G + A D D+G N + + + F L G L+ DRE
Sbjct: 1829 VTDENDNSPEFEAGSATLVEVRESAAPGTLLTVLHATDRDAG-SNGTVS-----ARAHTHTGTRIPPQYILIIQNESGVTIVDVAKADFVEKTSQFILFRIVALDGGSPPRST-TFNLSVIVLDVNDNVPIFLSPGGYAVSVVELGAPGTLVASVWATDADAGPNGQV----TFRIESGGGDKLSIGPSDGIIRVAPGANIDRETRAAYTLMVVAVDRGNPPLSGSAIVRVLVDDVNDERPAFLAPVQTVSVLESLSVGSFVATVKATENYKGHNTKYTYKIAGIGKNAFTVHATSGLVTSTRLLKSY-------------ERFNLTAVATDHG-RPPLWGQAGLYVEVLDVNDHRPVFVLPPNGTVVNITEVMPVVIRIVEVLAVDGDEGQNGAVRYSFLHAGGVGSRDWESFRINATSGIISTARALDRESQAVYSLILLASDQG-QPVSYESTQPLQVVLDDIDDNEPVFIVLPDGGAPYQSFSIPEHSPPGTAVGNVSGAVDADVGANAIVYYFIAAGNEGNKFNLSRWGLLVVLSDLDRE 2347 HSP 11 Score: 82.8037 bits (203), Expect = 4.941e-16 Identity = 124/542 (22.88%), Postives = 230/542 (42.44%), Query Frame = 3
Query: 468 FQVVALVMRDKQFIQELRINIIVEDVNDNDP-FFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVS-KDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFII-VPTINVEIAKTFAISDQGIIYLIKHL-DYETAPKYEIPVRVTDG---EFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTK-----KIN-----IYLNQEIDRDQINGDRRFSVII-CNDMGINNRXXXXXXXXXXXXXXNDNSPQF-TLTDYVV-----RVKENLKPQYPLIDVS-ATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTV-----------VATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLI 1985
F++VAL +++IV DVNDN P F Y ++ E+ PG + A D D N Q+++ + E+ S+ DG + +D ET + L+++A ++ P +++ + +++DD+ND P F + V +LE++ + + +KAT+ K ++ + I A S G++ + L YE ++ + TD + V ++DVND P F L P V++ + ++ + V ++ EG N A+R+ ++ +IN I + +DR+ +S+I+ +D G + +T + + + D +DN P F L D + E+ P + +VS A D D G N+ + YFI+ F + G ++ + LDRE YY + V V T + + + V +++ D+ND P T V + +G+ + +L A D D+G N ++ ++
Sbjct: 1921 FRIVALDGGSPPRSTTFNLSVIVLDVNDNVPIFLSPGGYAVSVVEL-GAPGTLVASVWATDADAG-PNGQVTFRI-ESGGGDKLSIGPSDGIIRVAPGANIDRETRAAYTLMVVAVDRGNPPLSGSAI-VRVLVDDVNDERPAFLAPVQTVSVLESLSVGSFVATVKATENYKGHNTKYTYKIAGIGKNAFTVHATS--GLVTSTRLLKSYE---RFNLTAVATDHGRPPLWGQAGLYVEVLDVNDHRPVFVLPPNGTVVNITEVMPVVIRIVEVL---------AVDGDEGQ-NGAVRYSFLHAGGVGSRDWESFRINATSGIISTARALDRES---QAVYSLILLASDQGQPVSYESTQPLQVVLDDIDDNEPVFIVLPDGGAPYQSFSIPEHSPPGTAVGNVSGAVDADVGANAIVYYFIAAGNEGNKFNLSR-WGLLVVLSDLDREVSPYYAIIVKASSNPNWTPAVTTGPEFDPSKDRTLREVRVYLEDINDQWPVFTNHEYTAGVAVDAKVGSELLQLEAVDRDVGNNSIVLYRIL 2439 HSP 12 Score: 81.2629 bits (199), Expect = 1.406e-15 Identity = 130/534 (24.34%), Postives = 220/534 (41.20%), Query Frame = 3
Query: 762 LDAETIDTHRLILIAWNQNYPSRPTASLP------ITIVIDDINDNEPRF-SQSIYRVPILENVELNHQILQLKATDKDKTS--------------RL--QFII-------VPTINVEIAKTFAISDQGIIYLIKHLDYETAPKYEIPVRVTDGEFSSNGRVEVVIIDVNDCAPQFTLNPENLVIS--ENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKK------INIYLNQEIDRDQINGDRRFS---VIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLN--TFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSA------FSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAY 2216
LD E D++ L +++ + P A L + + + D NDN P F + S V + E+ + L ATD+D S R+ Q+I+ V ++V A + Q I++ I LD + P+ S+ + V+++DVND P F L+P +S E TL+ ++ D D+ PN + F I ++ I + IDR+ R + +++ D G N + + V + V D ND P F V V E+L + V AT+ G N++ Y I+ + F + SG + + L + + + +T VATD + A +++ V+DVND P N ++ E P+ I +++A D D GQNG ++ + + + + T+G + T + DRES Q +SL + D G+ + S + + + D +DN P V+PD A Y
Sbjct: 1791 LDREATDSYMLTVLSRDGG-PREAIAVLTNKPGAYVYVNVTDENDNSPEFEAGSATLVEVRESAAPGTLLTVLHATDRDAGSNGTVSARAHTHTGTRIPPQYILIIQNESGVTIVDVAKADFVEKTSQFILFRIVALDGGSPPR------------STTFNLSVIVLDVNDNVPIF-LSPGGYAVSVVELGAPGTLVASVWATDADAG------------PNGQVTFRIESGGGDKLSIGPSDGIIRVAPGANIDRET-----RAAYTLMVVAVDRG-NPPLSGSAIVRVLVDDVNDERPAFLAPVQTVSVLESLSVGSFVATVKATENYKGHNTKYTYKIAG-IGKNAFTVHATSGLVTSTRLL--KSYERFNLTAVATDHGRPPLW--GQAGLYVEVLDVNDHRPVFVLPPNGTVVNITEVMPVVIRIVEVLAVDGDEGQNGAVRYSFLHAGGVGSRDWESFRINATSGIISTARALDRES--QAVYSLILLASDQGQPVSYESTQPLQVVLDDIDDNEPVFIVLPDGGAPY 2285 HSP 13 Score: 71.2478 bits (173), Expect = 1.607e-12 Identity = 69/251 (27.49%), Postives = 116/251 (46.22%), Query Frame = 3
Query: 1803 HTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFEL-LTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKA----IKLKRS--WQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFAD 2534
H +A VHI +I+ ND P + L SV+EN +GT + +++ATD D G G+ + S S F L +G + + D E+ +F++ + RD G + + V I +LD NDN+P ++ +DN+ T P+ +D D PN Q+ +S I P S S+ Y ++T + L R+ +++ G +T++A D GSPP ++ +V+ D
Sbjct: 10 HWGSARVHITLINENDNRPIFSLPLYNVSVWENATLGTSVVQVLATDLDAGVFGQVSYHF--SDDSDKFSLDPASGLISVAAALDFEATP--RFTVTVMARDGGGQ---ETAGRVRINLLDVNDNTPVFQR-DSYVGTARENDNSLT--------------PVVRVRATDEDSPPNNQITYS--ILPTSAYSS---YFSITVSGGYGVVTLARALDYEKIPGGTISLTIMALDGGSPPLNSTVTAIVEVFD 233 HSP 14 Score: 50.0618 bits (118), Expect = 3.913e-6 Identity = 52/223 (23.32%), Postives = 104/223 (46.64%), Query Frame = 3
Query: 363 EFFSLKPGSSMLTTSKLIDLESLCGSSDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFF-----KNASYTKNIKEIIYGPGKSI-DLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAW-NQNY-----------PSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKD 977
E F + S +++T++ +D ES S + + Q V+ Q +Q ++++D++DN+P F A Y PG ++ ++ A D D+ N + Y + + F++S+ G +L+++ +LD E + +I+ A N N+ PS+ + + ++DIND P F+ Y + + ++ ++LQL+A D+D
Sbjct: 2215 ESFRINATSGIISTARALDRESQAVYSLILLASDQGQPVS--YESTQPLQ-----VVLDDIDDNEPVFIVLPDGGAPYQSFSIPEHSPPGTAVGNVSGAVDADVG-ANAIVYYFIAAGNEGNKFNLSRWG--LLVVLSDLDREVSPYYAIIVKASSNPNWTPAVTTGPEFDPSKDRTLREVRVYLEDINDQWPVFTNHEYTAGVAVDAKVGSELLQLEAVDRD 2427
BLAST of Protocadherin gamma vs. Ensembl Sea Lamprey
Match: ENSPMAT00000008517.1 (pep scaffold:Pmarinus_7.0:GL476786:43429:129410:1 gene:ENSPMAG00000007697.1 transcript:ENSPMAT00000008517.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 163.31 bits (412), Expect = 1.196e-40 Identity = 199/772 (25.78%), Postives = 319/772 (41.32%), Query Frame = 3
Query: 366 FFSLKPGSSMLTTSKLIDLESLCGSSDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSL-----QETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLP-ITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDK----TSRLQFIIVPTINVEI-AKTFAISDQGIIYLIKHLDYETAPKYEIPVRVTDG---EFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGN---------------IVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLT-NGSLLTKVSFDRESL----SQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADI---PPRLIDQNISM 2570
+FS+ + ++TT +D E SS N + + Q + K L + ++ DVND P F Y E PG + A D DL N + Y+ + F S GK + +K LD E ++ + L++ A ++ P P S +T+V+ D+NDN P F Y ILEN + + ATD D+ T R Q ++ A T A+S + LD E Y++ V DG S V + + D D P F + + V+ EN TL+G+ IV DQ ++ IE G R T N +R ++ L + + G+ SV++ + N+++P F Y V + E+ V ATDKD G N ++KY I + + F I + G++ LDRE ++ Y +TV A D + + +S+ TV++ V+DVND P N S F E Q +G+++G + ATD D G NG ++ + FEL + G + + FDRE+L FS + D G L + V + + D NDN P+ + + Y S VS++ S + + T SD+D+G NG + +++ F ++ + I L S + + + + + A D G+ P S + VQ D PPR + +S+
Sbjct: 388 WFSVDESTGLVTTDGKVDRE--VASSVVLNISAQDQGA----QPKTAYTSLTVTLL--DVNDEPPLFTQTKYVATAVENSL-PGLFVVSVSAADSDLGE-NGTVRYNFDPDMPAQYREMFRLD-SLTGK--VTTLKSLDREELEEYPLVVQAQDRGSP--PLGSTAKVTVVVGDLNDNHPVFYPVQYFASILENEPGGTAVTTVTATDPDRGANGTVRYQLTAGDAARFQVNAVTGAVSTR------VSLDREERAVYQLQVTALDGGHLRARSPAIVTITVADAQDTPPTFARDDYSFVVFENVAPGTLVGSVSASTLDLNANVTYLIVSGDQRGSF---SIEWSGG------RI-FTANAIDREEQAFYQLRVVANSGGVAGEASVSVLVHD--------------------VNNHAPVFDRASYEVSIAEDEPVNSRFFSVRATDKDSGKNGEVKYEIGEGNGGEKFGIFPD-GQLYVRYELDRETREEYSLTVSAMDTGVEPL--SSSVTVNVTVLDVNDNKPLFNSSSYVFHFCEEQEVGSLVGAVQATDADAGSNGGVTYSFEKPQVN--FELDSETGRIASLRVFDREALIRQGGAASFSFSVVATDGGRPKPLQDRATVQVFVQDVNDNPPQFA-----KSVYQAS----------VSESASNLTQLLRVTASDVDEGVNGALRYAIN----EGNEGGKFTVDASTGQITLLGSLDREETASYTLVVSATDSGTSPLAASCTVAVQVLDENDNPPRFTESLLSV 1084 HSP 2 Score: 158.688 bits (400), Expect = 3.268e-39 Identity = 153/580 (26.38%), Postives = 259/580 (44.66%), Query Frame = 3
Query: 465 EFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKD--KTSRLQFIIVPTINVEIAKTFAISDQGIIYLIKHLDYETAPKYEIPVRVTDG---EFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFEL-LTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKI 2186
+ QV AL + + I V D D P F Y+ + E + PG + A DL N ++Y + FS+ G I +D E ++L ++A + + +++++ D+N++ P F ++ Y V I E+ +N + ++ATDKD K +++ I E F I G +Y+ LD ET +Y + V D SS+ V V ++DVND P F + E +L+G + D D+ + G+ P + F++ ++ + R + ++ + + R FSV+ D G TV + V D NDN PQF + Y V E+ L+ V+A+D D+GVN ++Y I++ F +D ++G+I + SLDRE+ Y + V ATD + + ++ TV + V+D ND PR ESL + E+ +G ++ L A+D D G +G + ++ F + + GS+ D E +Q + L ++ D G SS T + + + D NDN P
Sbjct: 625 QLQVTALDGGHLRARSPAIVTITVADAQDTPPTFARDDYSFVVFENV-APGTLVGSVSASTLDL---NANVTYLIVSGDQRGSFSIEWSGGRIFTA-NAIDREEQAFYQLRVVANSGGVAGEAS----VSVLVHDVNNHAPVFDRASYEVSIAEDEPVNSRFFSVRATDKDSGKNGEVKYEIGEGNGGE---KFGIFPDGQLYVRYELDRETREEYSLTVSAMDTGVEPLSSSVTVNVTVLDVNDNKPLFNSSSYVFHFCEEQEVGSLVGAVQATDADAGS-NGGVTYSFEKPQ--VNFEL-DSETGRIASLRVFDREALIRQGGAASFSFSVV-ATDGGRPKPLQDRATVQVFVQDVNDNPPQFAKSVYQASVSESASNLTQLLRVTASDVDEGVNGALRYAINEGNEGGKFTVDASTGQITLLGSLDREETASYTLVVSATDSGTSPL--AASCTVAVQVLDENDNPPRFTESLLSVDALESTRVGELLITLTASDEDTGPSGDVRYAIVAGNTHATFAIDRSTGSVFLARRLDFE--TQRLYRLNVSAEDGGRPPR-SSATILVVHVRDFNDNPPAF 1182 HSP 3 Score: 157.532 bits (397), Expect = 6.905e-39 Identity = 185/683 (27.09%), Postives = 297/683 (43.48%), Query Frame = 3
Query: 243 YWIKENQPPGLVVGNL----LDNLPYKQYFISPGYHFVLQKESEEFFSLKPGSSMLTTSKLIDLESLCGSSDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLP--------RAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIV---PTINVEIAKTFAISDQGIIYLIKHLDYET------APKYEIPVRVTDG----EFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKIN-----IYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLI----PSAFSHYFELLTNGSLLTKVSFDRESLSQV-KFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKI 2186
+ + EN PG +VG++ LD Y I G Q+ S FS++ + T+ ID E + F + +V E ++++V DVN++ P F ASY +I E D P RA DKD S N ++ Y + E + F + DG+ L + ELD ET + + L + A + ++S+ + + + D+NDN+P F+ S Y E E+ + ++ATD D S P +N E+ S+ G I ++ D E A + V TDG V+V + DVND PQF + +SE+ T L + D VD G+ N A+R+ I E N ++ I L +DR++ +++++ + A+ TV + VLD NDN P+FT + V E+ + LI ++A+D+D G + ++Y I F ID ++G + + LD E Q Y++ V A D R ++T V +HV D ND P S+ EN PIGT + + A D D NG+ +++ P A H+ +G + T DRE + + ++R T + I S+ V + + DENDN+P+
Sbjct: 665 FVVFENVAPGTLVGSVSASTLDLNANVTYLIVSGD----QRGS---FSIEWSGGRIFTANAIDREE-----------QAFYQLRVVANSGGVAGEASVSVLVHDVNNHAPVFDRASYEVSIAE---------DEPVNSRFFSVRATDKD-SGKNGEVKYEIGEGNGGEKFGIFPDGQ--LYVRYELDRETREEYSLTVSAMDTGVEPL-SSSVTVNVTVLDVNDNKPLFNSSSYVFHFCEEQEVGSLVGAVQATDADAGSNGGVTYSFEKPQVNFELD-----SETGRIASLRVFDREALIRQGGAASFSFSVVATDGGRPKPLQDRATVQVFVQDVNDNPPQFAKSVYQASVSESASNLTQLLRVTASD-----VDEGV-------NGALRYAINEGNEGGKFTVDASTGQITLLGSLDREETAS---YTLVVSATDSGTSPLAASCTVAVQVLDENDNPPRFTESLLSVDALESTRVGELLITLTASDEDTGPSGDVRYAIVAGNTHATFAIDRSTGSVFLARRLDFETQRLYRLNVSAEDGG-RPPRSSATILV-VHVRDFNDNPPAFLPGDVFASIMENIPIGTRVITVTARDPDADVNGELHYSIARQFPPGA--HFTIDPESGEICTAAEIDREVTGGLFEVTVRATDKAIPVHTRRSALKNVTVLVTDENDNAPRF 1292 HSP 4 Score: 145.976 bits (367), Expect = 2.337e-35 Identity = 184/761 (24.18%), Postives = 326/761 (42.84%), Query Frame = 3
Query: 345 LQKESEEFFSLKPGSSMLTTSKLIDLESLCGSSDCYNGTKEFQVVALVMRDKQ---FIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAIS-DQGIIYLIKHLDYETAPKYEIPVRVTDGEFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKI----NIYLNQEIDRDQINGDRRFSVII-CNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREK------QDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFEL-LTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTEST--NSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQ---FADIPPRLIDQNI 2564
+ + E F L + +TT K +D E L +E+ +V + +D+ ++ ++V D+NDN P F Y +I E PG + N + Y L F V+ + + LD E ++L + A + + R + +TI + D D P F++ Y + ENV + + A+ D + + ++IV + + +F+I G I+ +D E Y++ V G + V V++ DVN+ AP F + I+E+ + ++ D+DS N ++++I E N I +Y+ E+DR+ +S+ + D G+ +++ TV +TVLD NDN P F + YV E + + V ATD D G N + Y S Q F++D +G+I ++ DRE + +VVATD + ATV + V DVND P+ +S+ SV E+ T + ++ A+D D G NG + + F + + G + S DRE + ++L ++ D G L++ V +++LDENDN P+ T+ ++V EST + T SD D GP+G V +++ ++ ++ F ++ + ++ L R + + + A+D G PPR ++ +++V F D PP + ++
Sbjct: 489 MPAQYREMFRLDSLTGKVTTLKSLDREEL----------EEYPLV-VQAQDRGSPPLGSTAKVTVVVGDLNDNHPVFYPVQYFASILE--NEPGGTAVTTVTATDPDRGANGTVRYQLTAGDAA-RFQVNAVTGAVSTRVS-LDREERAVYQLQVTALDGGH-LRARSPAIVTITVADAQDTPPTFARDDYSFVVFENVAPGTLVGSVSASTLDLNANVTYLIV---SGDQRGSFSIEWSGGRIFTANAIDREEQAFYQLRVVANSGGVAGEASVSVLVHDVNNHAPVFDRASYEVSIAEDEPVNSRFFSVRATDKDSGK------------NGEVKYEIGEGNGGEKFGIFPDGQLYVRYELDRET---REEYSLTVSAMDTGVEP-LSSSVTVNVTVLDVNDNKPLFNSSSYVFHFCEEQEVGSLVGAVQATDADAGSNGGVTY--SFEKPQVNFELDSETGRIASLRVFDREALIRQGGAASFSFSVVATDGGRPKPLQ-DRATVQVFVQDVNDNPPQFAKSVYQASVSESASNLTQLLRVTASDVDEGVNGALRYAINEGNEGGKFTVDASTGQITLLGSLDREETA--SYTLVVSATDSGTS-PLAASCTVAVQVLDENDNPPRF-----------------TESLLSVDALESTRVGELLITLTASDEDTGPSGDVRYAI----VAGNTHATFAIDRSTGSVFLARRLDFETQRLYRLNVSAEDGGRPPRSSATILVVHVRDFNDNPPAFLPGDV 1187 HSP 5 Score: 134.42 bits (337), Expect = 7.437e-32 Identity = 150/592 (25.34%), Postives = 265/592 (44.76%), Query Frame = 3
Query: 357 SEEFFSLKPGSSMLTTSKLIDLESLCGSSDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKS----IDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPI---LIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDK--TSRLQFIIVPTINVEIAKTFAISDQGIIYLIKHLDYETAPKYEIPVRVTD------GEFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSA---YVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSV-IICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYEN-QPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQ 2072
SE F + S +L S+ +D E + ++ + D + R+++ V D NDN P F +Y+ ++ E GK+ I A D D +++Y+L + + P+ L + + LD E+ + L A + + TA L + ++ D NDN P + E+ +L++ ATD D+ + L+F I + + FA+ + G + + + LD E Y + VRV+D SS RV +++ DVND AP FT +P + + E++ ++ + D DS YV+ + +G + T + L +E+DR+ + +++ ++ D G T+T T+ +TV DANDN+P+F +Y + E+ P ++ +SA D D+G N +++Y I+ F++D G + + LDRE+ Y++ V A D + TA+V + + DVNDC+P S T EN Q +I +++A D D+G +G+ + F + +G + S DRE+ Q
Sbjct: 1559 SEGAFVVDAASGVLRASRRLDREE-----------RASYLLTVRASDGTHATDARLSVAVRDANDNSPRFSRHAYSFDVAEDAAPDGKTTRAVIGTVLAGDADSGPFG-EVTYALAPSEDSDWADGAFGLHPVTGALNVTRPLDRESRACYVLRARATDGGGLAA-TARLYVNVL--DANDNAPSVQNDSLAAEVPEDAPPGTSLLRISATDDDEGVNAELEFSIS---SGDPEGRFAVGNDGQLSVARALDRERQSFYNLVVRVSDRARHPPARLSSAVRVSLILTDVNDNAPAFT-SPRSALAPEDSPVGAVVATVQAVDPDSGRNSYVEYAL-ATDGEEGGGGAGAGPGPFALNTVTGEVRLVRELDRE---ARQSYALTVLAVDKG-RPPLTSTATLAVTVGDANDNAPRFPRREYEAAIAEDEPPGTEVLRLSAWDPDEGANGELRYDIASGDPTGDFRLDPVLGTLAVARPLDRERTASYELAVRARDGG--GPARSDTASVRVTLSDVNDCSPAFQLSPYTVHARENTQGPPVLILQVVARDDDLGSSGQVTYAAAGGNDGGAFSVSPDGHVHLLRSLDREAQPQ 2124 HSP 6 Score: 134.035 bits (336), Expect = 1.108e-31 Identity = 139/537 (25.88%), Postives = 236/537 (43.95%), Query Frame = 3
Query: 522 INIIVEDVNDNDPFFKNASYTKNI---KEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETI------DTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDK--TSRLQFIIVPTINVEIAKTFAISDQGIIYLIKHLDYETAPKYEIPVRVTDG---EFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKIN-----IYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDH-THQQYFKIDENSGKIIGIQSLDRE-KQDYYQVTVVATDLAIN-EIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFEL-LTNGSLLTKVSFDRES 2063
+N+ V DVNDN P F ++SY + +E+ G + +A D D N ++YS ++ F S+ G+ + ++ D E + + ++A + P + + + D+NDN P+F++S+Y+ + E+ Q+L++ A+D D+ L++ I E K + G I L+ LD E Y + V TD +++ V V ++D ND P+FT + ++ E+T LL + D+D+ P+ +R+ I N+ T I+ ++L + +D R + + + + G ++ + + V D NDN P F D + EN+ +I V+A D D VN ++ Y I+ +F ID SG+I +DRE ++VTV ATD AI R ++ V + V D ND APR G+V+G L A+D D +N + + + F L G + T DRES
Sbjct: 848 VNVTVLDVNDNKPLFNSSSYVFHFCEEQEV----GSLVGAVQATDADAG-SNGGVTYSFEKPQVNFELD-SETGR--IASLRVFDREALIRQGGAASFSFSVVATDGGRPKPLQDRATVQVFVQDVNDNPPQFAKSVYQASVSESASNLTQLLRVTASDVDEGVNGALRYAI--NEGNEGGKFTVDASTGQITLLGSLDREETASYTLVVSATDSGTSPLAASCTVAVQVLDENDNPPRFTESLLSVDALESTRVGELLITLTASDEDTG------------PSGDVRYAIVAGNTHATFAIDRSTGSVFLARRLD---FETQRLYRLNVSAEDGGRPPRSSATILVVHVRDFNDNPPAFLPGDVFASIMENIPIGTRVITVTARDPDADVNGELHYSIARQFPPGAHFTIDPESGEICTAAEIDREVTGGLFEVTVRATDKAIPVHTRRSALKNVTVLVTDENDNAPRFVTPTAILVDGLRAAAGSVVGTLQASDPDEAENAAVRYAVTGGDAAILFRLDRRTGIIETSTELDRES 1359 HSP 7 Score: 124.405 bits (311), Expect = 8.000e-29 Identity = 161/635 (25.35%), Postives = 271/635 (42.68%), Query Frame = 3
Query: 519 RINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQ-----ILQLKATDKDKT--SRLQFIIVPTINVEIA-KTFAISD-QGIIYLIKHLDYETAPKYEIPVRVTDGE-FSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFS--VIICNDMGIN--NRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFIS---------DHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFEL-LTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSP---IFPFTFSDLDDGPNGQVAF 2342
++ I VEDVNDN P F ++E G G+ I A D D N ++YS+ S + G +L + LD E ++ L + A + + + +++ + D NDN PRFS+ Y + E+ + + I + A D D + + + P+ + + A F + G + + + LD E+ Y + R TDG ++ R+ V ++D ND AP + + E+ T L I D D V++ +E S + RF + + + + + +DR++ + F V+ +D + R ++ V+L + D NDN+P FT + E+ + V A D D G NS ++Y ++ F ++ +G++ ++ LDRE + Y +TV+A D + TSTAT+ + V D ND APR ++ E++P GT + +L A D D G NG+ + + + F L G+L DRE + + ++R RD G S +V + + D ND SP + P TV E+T P I D D G +GQV +
Sbjct: 1501 QVEISVEDVNDNPPVFAVPEMELEVEENT-GEGEVIFTLSATDADQGQ-NALVTYSVLSGSEGAFVVDAASG--VLRASRRLDREERASYLLTVRASDGTHAT----DARLSVAVRDANDNSPRFSRHAYSFDVAEDAAPDGKTTRAVIGTVLAGDADSGPFGEVTYALAPSEDSDWADGAFGLHPVTGALNVTRPLDRESRACYVLRARATDGGGLAATARLYVNVLDANDNAPSVQNDSLAAEVPEDAPPGTSLLRISATDDDEG-VNAELEFSISSGDPEGRFAVGNDG-------QLSVARALDRER----QSFYNLVVRVSDRARHPPARLSSAVRVSLILTDVNDNAPAFTSPRSAL-APEDSPVGAVVATVQAVDPDSGRNSYVEYALATDGEEGGGGAGAGPGPFALNTVTGEVRLVRELDREARQSYALTVLAVDKGRPPL--TSTATLAVTVGDANDNAPRFPRREYEAAIAEDEPPGTEVLRLSAWDPDEGANGELRYDIASGDPTGDFRLDPVLGTLAVARPLDRERTASYELAVR--ARDGGGPAR-SDTASVRVTLSDVNDCSPAFQLSP-----------------YTVHARENTQGPPVLILQVVARDDDLGSSGQVTY 2092 HSP 8 Score: 124.405 bits (311), Expect = 9.721e-29 Identity = 165/709 (23.27%), Postives = 291/709 (41.04%), Query Frame = 3
Query: 522 INIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLIN-NQISYSL----QETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAISDQGIIYLIKHLDYETAPKYEIPVRVTDGEFSS-NGRVEVVI--IDVNDCAP--QFTLNP---ENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSV-IICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKV----SFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADI---PPRLIDQNISMGSFSN 2585
+ ++V DVNDN P F + + G+ + L A D+D+ N +Y + +E V+K L LD E ++ L + A + P R L + + + D NDN P F + YR + E+ + + L + + VP KT G++ + LD+E +Y + +R DG +GR VI +DVND P +F P + + E+ T+ + V D DS + + N+ F + + + + ++DR++I +++ I+ +D G +AT ++ + V D ND++P+F L+ Y + E + DV+A D D G+N++++Y I +F +DE++G + +DRE + + A D T+ ++ + ++DVND P ++ + EN G + + A D D+G+NG + P + Y E+ SL KV S DRE L + + L + +D G L S V + + D NDN P + F ++ + E + + T +D D G NG V Y ++ F +N A+ + S + + + + + A D G + ++ + AD PP + S F N
Sbjct: 9 VRVVVGDVNDNAPSFPEPGVMEVAFKEDAAVGRQVLLDTAVDRDVGPNGVNHHAYKIVSGNEEGRLVPPRPVTKRAFLHLATTGPLDREANPSYALAVQAEDGGSPRR-YGRLQVNVTVQDANDNPPAFEKPAYRASVAEDSPVGAALRDLLHRGRGP------LAVPF----DPKT------GMVSTRQPLDFEARRQYTLSLRAADGGNPPLSGRATAVIQLLDVNDNDPAIRFVYLPPAARSASVDESAAPGTVAALVTVTDADSPTANGELSVSIVGGNERGHFVLHAPGVPGLRVLKVA--SQLDRERIP---MYNLTILASDNGKPVARSATASLVVYVNDVNDHAPRFALSAYAAALSEGAPAGSYVKDVTAMDADSGLNAKLRYSIVSGNDLGWFSVDESTGLVTTDGKVDREVASSVVLNISAQDQGAQP--KTAYTSLTVTLLDVNDEPPLFTQTKYVATAVENSLPGLFVVSVSAADSDLGENGTVRYNFDPDMPAQYREMFRLDSLTGKVTTLKSLDREELEE--YPLVVQAQDRGSP-PLGSTAKVTVVVGDLNDNHPVFYPVQYF---------------ASILENEPGGTAVTTVTATDPDRGANGTVR-----YQLTAGDAARFQVNAVTGAVSTRVSLDREERAVYQLQVTALDGGHLRARSPAIVTITVADAQDTPPTFARDDYSFVVFEN 670 HSP 9 Score: 99.3673 bits (246), Expect = 3.754e-21 Identity = 114/493 (23.12%), Postives = 187/493 (37.93%), Query Frame = 3
Query: 1137 FSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAY-------VDSG------IECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKP-----QYPLIDVSATDKDDGVNSQIKYFISDHTHQQY----FKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKI-----YPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFAD 2534
SS +VE+ + DVND P F + L + ENT ++ + D D V SG ++ G + R D R ++ + L D R SV + + ANDNSP+F+ Y V E+ P + + V A D D G ++ Y ++ + F + +G + + LDRE + Y + ATD +TA ++++V+D ND AP + V E+ P GT + ++ ATD D G N + F++ F + +G L + DRE S +R++ R LSS V + + D NDN+P T+ S + + + D D G N V +++ + F LN ++L R + + +T++A DKG PP ++ + V D
Sbjct: 1496 MSSFNQVEISVEDVNDNPPVFAVPEMELEVEENTGEGEVIFTLSATDADQGQNALVTYSVLSGSEGAFVVDAASGVLRASRRLD-------REERASYLLTVRASDGTHATDARLSVAVRD--------------------ANDNSPRFSRHAYSFDVAEDAAPDGKTTRAVIGTVLAGDADSGPFGEVTYALAPSEDSDWADGAFGLHPVTGALNVTRPLDRESRACYVLRARATDGG----GLAATARLYVNVLDANDNAPSVQNDSLAAEVPEDAPPGTSLLRISATDDDEGVNAELEFSISSGDPEGRFAVGNDGQLSVARALDRERQSFYNLVVRVSDRARHPPARLSSAVRVSLILTDVNDNAPAF----------------TSPRSALAPEDSPVGAVVATVQAVDPDSGRNSYVEYALATDGEEGGGGAGAGPGPFALNTVTGEVRLVRELDREARQSYALTVLAVDKGRPPLTSTATLAVTVGD 1941
BLAST of Protocadherin gamma vs. Ensembl Sea Lamprey
Match: si:ch211-199f5.1 (protocadherin 8 [Source:HGNC Symbol;Acc:HGNC:8660]) HSP 1 Score: 152.525 bits (384), Expect = 8.830e-38 Identity = 176/685 (25.69%), Postives = 296/685 (43.21%), Query Frame = 3
Query: 234 TIKYWIKENQPPGLVVGNLLDNLPYKQYFISPGYHFVLQKESEEFFSL---KPGSSMLTTSKLIDLESLCGSS-DCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQI-SYSLQETSTY-FHFSVSKDGKPI--LIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDK--TSRLQFIIVPTINVEIAKTFAISDQ-GIIYLIKHLDYETAPKYEIPVRVTDGEFSS---NGRVEVVIIDVNDCAPQFTLN------PENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECR-EGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKY-----FISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINE-----SLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYF-------ELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDN 2174
T+KY + E QP G +VG L D+L + P HF L + + FSL + ++ ++ID E CG + C F V+ + R Q + + + D+ND+ P F + I E + +P +DL + N + +Y L E + DG L++ LD E + L L AW+ P R +L + I + D NDN P F+Q+ V + E+ +L L ATD D+ + + ++ E+ + F + + G + L LD+E +YEI ++ D SS + +V V + D+ND AP+ L+ + + +SE ++ +G + V D DSA + + C G P+ F + + + N +DR+Q+ F V+ +D G R A T+ +LD NDN P+F + Y + EN P + V+A D D N I Y ++ + Y I+ +SG I ++ LD E V A D + + + ATV + ++D ND AP + + + +G ++ + A D D NG+ + ++ + F E+ TN + +T + S + SL + VRD G LS+ A+ I++ D
Sbjct: 30 TVKYALYEEQPAGTLVGRLSDDL-QGRVAEHPSRHFRLMRRDD--FSLVHVEEADGTVSAREVIDREQQCGQAPSC---VIRFDVLCTLPRG--LFQLVHAEVELLDINDHAPDFARSEMHVEISESV---ALGTRVPLEGARDLDVGGNALRAYHLDENERFGLALRARTDGAKYAELVVKSRLDREQEGEYTLQLTAWDGGDPPRSGTTL-VRITVLDSNDNSPVFAQTSCNVTVREDATPGTVLLTLNATDVDEGPNGEVVYSFSSPVDAEVRRLFQLDPKTGKLSLKGQLDHELNSEYEISIQARDMGPSSIPAHCKVLVHVEDINDNAPEIKLDFIMQSRGDTVFVSEGAAYESFVGLVTVSDIDSAE-NGLVACHLRGHPH----FKLLPYRDDYV----VVTNSSLDREQMAD--YFLVLEASDGGTPPR-VAARQFTVRLLDENDNEPRFHRSTYEASLLENNSPGAYVTTVTAWDADAEHNGMIAYNVVESEVAGASVSTYVSINPSSGAIYALRPLDYEAMTSLTFQVQARDDGVPPL--VTNATVSVRIVDENDNAPVVTHPPLRNGTGVVRLPRDAGLGYLVTVVRARDSDSEANGELSYRIVQGNERNLFRINRLGGEVFTNAASVTDA-----AASATRHSLVVMVRDRGSPA-LSATAAIEIRVGAHGDG 682 HSP 2 Score: 99.7525 bits (247), Expect = 1.798e-21 Identity = 122/481 (25.36%), Postives = 212/481 (44.07%), Query Frame = 3
Query: 1155 VEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDIT-ENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFIS---DHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESL------NTFSVYENQPIGTVIGKLIATDCDIGQNGKFI--------FTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYS--DNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFY-LNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFAD 2534
EV ++D+ND AP F + ++ ISE+ T + D D G R ++ RF + ++ K + + +DR+Q + +++ + G + + T V +TVLD+NDNSP F T V V+E+ P L+ ++ATD D+G N ++ Y S D ++ F++D +GK+ LD E Y++++ A D+ + I + V +HV D+ND AP I +T V E + +G + +D D +NG F L+P + + ++TN SL DRE ++ + L + D G ++++ +++LDENDN P+ + Y S +NN+ +T T D D NG +A+++ ++ S + +N + AI R + A+D G PP T+ + V+ D
Sbjct: 122 AEVELLDINDHAPDFARSEMHVEISESVALGTRVPLEGARDLDVG----GNALRAYHLDENERFGLALRARTDGAKYAELVVKSRLDREQ---EGEYTLQLTAWDGGDPPRSGTTLVRITVLDSNDNSPVFAQTSCNVTVREDATPGTVLLTLNATDVDEGPNGEVVYSFSSPVDAEVRRLFQLDPKTGKLSLKGQLDHELNSEYEISIQARDMGPSSI--PAHCKVLVHVEDINDNAPEIKLDFIMQSRGDTVFVSEGAAYESFVGLVTVSDIDSAENGLVACHLRGHPHFKLLP--YRDDYVVVTNSSL------DREQMAD--YFLVLEASDGGTPPRVAARQ-FTVRLLDENDNEPRF-----HRSTYEASLLENNSPGAYVTT------------VTAWDADAEHNGMIAYNVVESEVAGASVSTYVSINPSSGAIYALRPLDYEAMTSLTFQVQARDDGVPPLVTNATVSVRIVD 565 HSP 3 Score: 77.0258 bits (188), Expect = 1.959e-14 Identity = 111/472 (23.52%), Postives = 199/472 (42.16%), Query Frame = 3
Query: 867 DINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAISDQGIIY---LIK-HLDYETAPKYEIPVRVTDG---EFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKI--------NIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVR-------VKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPS-----AFSHYFEL-LTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIP 2198
DIND+ P F++S V I E+V L ++ A D D N G Y ++K LD E +Y + + DG S V + ++D ND +P F N+ + E+ T+L + D VD G PN + + + +++ + L ++D ++N + S I DMG ++ A V + V D NDN+P+ L D++++ V E + + V+ +D D N + + H H + ++ ++ SLDRE+ Y + + A+D + + ++D ND PR + S S+ EN G + + A D D NG + ++ S + S Y + ++G++ D E+++ + F ++ RD G +++ T V ++I+DENDN+P ++ P
Sbjct: 128 DINDHAPDFARSEMHVEISESVALGTRVPLEGARDLDVGGNALRAYHLDENERFGLALRARTDGAKYAELVVKSRLDREQEGEYTLQLTAWDGGDPPRSGTTLVRITVLDSNDNSPVFAQTSCNVTVREDATPGTVLLTLNATD-----VDEG-------PNGEVVYSFSSPVDAEVRRLFQLDPKTGKLSLKGQLDH-ELNSEYEIS-IQARDMGPSS-IPAHCKVLVHVEDINDNAPEIKL-DFIMQSRGDTVFVSEGAAYESFVGLVTVSDIDSAENGLVACHLRGHPHFKLLPYRDDY-VVVTNSSLDREQMADYFLVLEASDGGTPP--RVAARQFTVRLLDENDNEPRFHRSTYEASLLENNSPGAYVTTVTAWDADAEHNGMIAYNVVESEVAGASVSTYVSINPSSGAIYALRPLDYEAMTSLTF--QVQARDDGVPPLVTNAT-VSVRIVDENDNAPVVTHPP 577
BLAST of Protocadherin gamma vs. Ensembl Sea Lamprey
Match: ENSPMAT00000009557.1 (pep scaffold:Pmarinus_7.0:GL476748:59426:101420:1 gene:ENSPMAG00000008644.1 transcript:ENSPMAT00000009557.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 152.525 bits (384), Expect = 1.943e-37 Identity = 173/668 (25.90%), Postives = 295/668 (44.16%), Query Frame = 3
Query: 348 QKESEEFFSLKPGSSMLTTSKLIDLESLCGSSDCYNGTKEFQVVALVMRDK-QFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFH------FSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKT---SRLQFII--VPTINVEIA------------KTFAISDQGIIYLIKHL-DYETAPKYEIPVRVTDG---EFSSNGRVEVVIIDVNDCAPQFTLNPENL--VISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDI--------TEN------NSERTKKINIY---------LNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTD----YVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSP 2180
+ +++ F + + L +K +D E++ + F V A RD+ + ++ + + V DVNDN P F+++ Y + E + G + RA D+D N Q++YSL E + FSV + + + + LD E H L ++A + P+R +A+ + + + D ND PRF + Y + E+ + + A D D T +L + + P + E A +T AIS + + L + + E+A ++ I V + DG + RV V + D ND APQF + + E ++ + + + D D ++ + N+A +F I T N N T +IY L Q +DR++ DR + D ++ V NDNSP + D Y V V E++ P L+ VSA D D G N+ I+Y + ++F++D +G++ + LDRE Y ++V ATD + A + + + DVND AP+ S SVYE+ + T++ ++ ATD D+G N K ++ + SA H+ +G + K DRE + + ++R D+ L+S V + +LD NDN P
Sbjct: 1207 ENNADDTFVVLSQTGRLKVAKALDHETVR--------SYRFGVKATFRRDEVDVVAQVLVTVHVGDVNDNRPVFESSVYEGVVMENLPA-GVPVVQVRATDRDGGA-NGQLAYSLAEEAGGEGGAARDLFSVDAESGWVRTL-RPLDREARAGHELAVVATDLGDPARLSATASVRVAVADANDCPPRFLRGSYAGDVPEDSAPGQVVAVVGADDADATPDNGQLTYYLTGAPRVAAEDALPGHGEHVLRESRTVAISVELLTILPPTVRETESACQFNIGVSIVDGGEPPLQTTARVVVRVSDENDNAPQFVEKRVQVKALARERSVAREAVCRVYARDADHG-ANAELSYSIDGGNEAGKFFIDPKDGVISTRNPCPVGTNDFLTVPCDIYVVVGEWKLHLKQPVDREE--RDRYQIEVTATDGAFVSKAVVDVAVLDA----NDNSP---VCDKGLLYAVAVAEDVAPGIFLLLVSARDADIGANAAIQYTLHG-PGAEHFRMDSATGELFTLAPLDREAVPAYALSVRATDGG----GRSCQAEILVSLEDVNDNAPQFPASHYAVSVYESTAVETLLTRVQATDSDLGLNRKVTYSFLDSAGGHFAIDERSGIISLKRPLDREHQAVYELTVRAEDGDVFRP--LTSTVGVSVAVLDVNDNPP 1846 HSP 2 Score: 132.109 bits (331), Expect = 4.234e-31 Identity = 169/708 (23.87%), Postives = 299/708 (42.23%), Query Frame = 3
Query: 513 ELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSL----QETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDK--TSRLQFIIVPTINVEIAKTFAISDQGIIYLIKHLDYET-APKYEIPVRVTDGEFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQD---SAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSV-IICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFI----SDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPS-------AFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSM--KIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETS----KVIMVQFADIPPRLI 2552
E+ ++I+V+DVNDN P F ++Y + E G S+ A D D+ N + Y + + +S F+ S +++ + LD E H ++ A + P T+ +P+TI + DINDN P F+Q +Y + E H + +++A+D D T +L++ I+ + F + + I I +L +T AP+Y + + V+DG F+S +V V I N +P F N I EN+ TLL + D+D +V I + RF I EN I+ ++ +DR+ +R F + I+ D G TV + D NDN P F +Y V + ++ V ATD D+G N+ + Y + SD + ++ +G ++ +SL + V A D E +H+ + V+ + P E+ +V E+ +G+ IG + N + +P A + L G L + D E++ +F ++ T R +E+ + ++ V + + D NDN P ++ V + P+ +D D G NGQ+A+S+ + + LF ++ ++ R + + ++A D G P R ++ +V + D PPR +
Sbjct: 727 EVNLDILVQDVNDNPPLFSQSAYATTLSEAAL-IGISVLQVSATDADIGS-NKALYYQIINNGKNSSECFYIDSSSG---LILTSRFLDYEQNQVHNFLVRASDSGMPFL-TSDVPVTITVTDINDNPPVFNQLLYEAFVSELAPRGHFVTRVQASDADASDTDKLEYSILSGND---HMNFVVDGKSGIISISNLRKQTLAPQYRLNISVSDGVFTSTAQVHVNIQSANLHSPIFGQNEYVKEIPENSEVGTLLTLVQATDKDWGPLGHVSYSIVNQFAGD----RFTIDENG-------QIFTSEPLDRED-PLERVFDINIMAKDGG---GRVGFTTVKVIATDENDNKPTFVTNEYFGNVLARAEKGTAILQVLATDPDEGSNADLVYTLYKGESDAV-EDVLEVQPLTGHVVTKESLVGLEGSRMSFFVKAEDKG-PERKHSVVPV-SVSVLPADAELPAFTEAAYALTVAEDAEVGSEIGV-----ARLAGNDSATYAAVPGGGGAENNADDTFVVLSQTGRLKVAKALDHETVRSYRFGVKATFRR--DEVDVVAQVLVTVHVGDVNDNRPVF---------------ESSVYEGVVMENLPAGVPVVQVRATDRDGGANGQLAYSLAEEAGGEGGAARDLFSVDAESGWVRTLRPLDREARAGHELAVVATDLGDPARLSATASVRVAVADANDCPPRFL 1385 HSP 3 Score: 128.642 bits (322), Expect = 4.866e-30 Identity = 154/606 (25.41%), Postives = 252/606 (41.58%), Query Frame = 3
Query: 720 VSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFI-----IVPTINVEIAKTFAI-SDQGIIYLIKHLDYETAPKYEIPVRVTD----GEFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSG--IECREGSPNDAMRFDITENNSE------RTKKINIYLNQEIDRD--QINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRV--KENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKI-------IGI----------------------QSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINES-LNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIF---PFTFSDLDDGPNGQVAFSMKIYPISLK 2372
+S+ G+ L + K LD ET+ ++R + A + A + +T+ + D+NDN P F S+Y ++EN+ ++Q++ATD+D + Q F++ ++ G + ++ LD E +E+ V TD S+ V V + D NDC P+F + E++ ++ +V D A D+G G+P A D + E RT I++ L + + +F++ + G T V + V D NDN+PQF V+ +E + + V A D D G N+++ Y I F ID G I +G Q +DRE++D YQ+ V ATD A S A V + V+D ND +P ++ L +V E+ G + + A D DIG N +TL H+ G L T DRE++ S+R T D G S + + + + D NDN+P+ + Y S +T +++ ++T+S + T+S LD G A + ISLK
Sbjct: 1217 LSQTGR--LKVAKALDHETVRSYRFGVKATFRRDEVDVVAQVLVTVHVGDVNDNRPVFESSVYEGVVMENLPAGVPVVQVRATDRDGGANGQLAYSLAEEAGGEGGAARDLFSVDAESGWVRTLRPLDREARAGHELAVVATDLGDPARLSATASVRVAVADANDCPPRFLRGSYAGDVPEDSAPGQVVA-VVGADDADATPDNGQLTYYLTGAPRVAAE-DALPGHGEHVLRESRTVAISVELLTILPPTVRETESACQFNIGVSIVDGGEPPLQTTARVVVRVSDENDNAPQFVEKRVQVKALARERSVAREAVCRVYARDADHGANAELSYSIDGGNEAGKFFIDPKDGVISTRNPCPVGTNDFLTVPCDIYVVVGEWKLHLKQPVDREERDRYQIEVTATDGAF-----VSKAVVDVAVLDANDNSPVCDKGLLYAVAVAEDVAPGIFLLLVSARDADIGANAAIQYTLHGPGAEHFRMDSATGELFTLAPLDREAVPAYALSVRAT--DGGGR---SCQAEILVSLEDVNDNAPQFPA-----SHYAVSVYESTAVETLLTRVQATDSDLGLNRKVTYSFLDSA-GGHFAIDERSGIISLK 1802 HSP 4 Score: 123.25 bits (308), Expect = 1.943e-28 Identity = 169/628 (26.91%), Postives = 273/628 (43.47%), Query Frame = 3
Query: 360 EEFFSLKPGSSMLTTSKLIDLESLCGSSDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKE-----IIYGPGKSIDLP-RAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLP--ITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEI-----AKTFAISDQGIIYLIKHLDYETAPKYEIPVRVTDGEFSSNGR--VEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSV-IICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVI--DVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSH---YFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSP 2180
E+ F + P S ++TT +L+D Y +Q+ ++I + D NDN P F + Y + E + K++ L RA D D S N+ + Y + E +FS+ I +I K LD E + + P + +A P +TI + D ND+ P FS+++Y +L ++L + ATD D + L F I T NV A+T IS Q +L +YE+ V+V DG+F S + V V + DVND AP F P V+ + +++ I +D+D V E + FD+ + ++ L + D + D F+V ++ D G+ + V+L + N P F Y V EN+KP P++++ A + + + I+D F ID N+G + I SLD E Q +++TV ATD S A V++ ++ DVND P ++S ++ E IG + ++ ATD DIG N + +I + + ++ ++G +LT D E F +R + D G L+S V I + D NDN P
Sbjct: 269 EDTFYVNPTSGVITTKELLD----------YERKPSYQLKIQATNMVGLSTNASVSIHLSDENDNAPVFDRSQYRGVVSEEAQAQTVVLNDKNVPLVIRATDLD-SEQNSLLVYQIVEHEAQTYFSIDSSTGAIKMI-KVLDYEKTPEFHFQVRVSDSGSP-KLSAETPANVTITVLDANDSPPIFSRAVYETVLLTPTYSGVRLLSMSATDPDTDASLTFSI-STGNVGDKFAINARTGDISVQNATHLRS--------RYELAVKVFDGKFVSTAQAVVAVRVEDVNDNAPVFVNLPYYAVVEVDAAPGSVVYTIAAFDRD---VGRNGEVSYSLKEEHEYFDV------EARSGDVSLRRSFTADMSSKD--FTVNVVATDSGV---PPLSSEVSLPITVINKAMPIFERPFYSKSVPENIKPHTPILNLQAKSPE---GLPLIFSITDGDPFNQFSIDFNTGVVNVIGSLDHETQTTFKLTVRATDSVTG-----SHAEVNLDILVQDVNDNPPLFSQSAYATTLSEAALIGISVLQVSATDADIGSNKALYYQIINNGKNSSECFYIDSSSGLILTSRFLDYEQNQVHNFLVRAS--DSGMPF-LTSDVPVTITVTDINDNPP 849 HSP 5 Score: 117.857 bits (294), Expect = 7.807e-27 Identity = 137/598 (22.91%), Postives = 253/598 (42.31%), Query Frame = 3
Query: 744 LIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFII-VPTINVEIAKTFAI-SDQGIIYLIKHLDYETAPKYEIPVRVTD-GE--FSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQ--------YPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNR-FLVTLIAKDKGSPP 2495
L ++ LD ET +H L ++ + P + A + + + D ND+ P F+ Y ++E+ L +L++ A D+D+ + + N + +F I GI+ + K LD YE+ VR D GE S+ V V++ ++ P+FT + +SE G+ V+ S+ E R+G+ D + T + +E+ + + + N +G++ + + ++ NDN+P F + Y V E + Q PL+ + ATD D NS + Y I +H Q YF ID ++G I I+ LD EK + V +D ++ + A V I V+D ND P + ++ + G + + ATD D + F++ F + + +S + + ++ L + V D G+ + +++ V +++ D NDN+P +P + V + S ++ D D G NG+V++S+K + ++ F + + L+RS+ ++ F V ++A D G PP
Sbjct: 74 LSTVESLDHETKQSHILTVMVRDSEIPVQ-KAYATVVVNVRDSNDHAPLFTSRHYEGRVVESAALGSAVLEVVALDRDRGPNAEVAYSIEAGNRNVGNSFTIHPTMGILSVAKELDRAVVEAYELVVRAVDRGEPPRSATTAVRVLVTVADNAPPKFTSKDYSAEVSEGARP----GSFVLMVTASSRSTVNYEIRDGNFEDTFYVNPTSG---------VITTKELLDYERKPSYQLKIQATNMVGLSTNASVSIHLSDE----NDNAPVFDRSQYRGVVSEEAQAQTVVLNDKNVPLV-IRATDLDSEQNSLLVYQIVEHEAQTYFSIDSSTGAIKMIKVLDYEKTPEFHFQVRVSDSGSPKLSAETPANVTITVLDANDSPPIFSRAVYETVLLTPTYSGVRLLSMSATDPDT--DASLTFSISTGNVGDKFAI---NARTGDISVQNATHLRSRYELAVKVFD-GKFVS-TAQAVVAVRVEDVNDNAPVFVNLPYY---------------AVVEVDAAPGSVVYTIAAFDRDVGRNGEVSYSLK------EEHEYFDVEARSGDVSLRRSFTADMSSKDFTVNVVATDSGVPP 624 HSP 6 Score: 106.301 bits (264), Expect = 3.293e-23 Identity = 143/591 (24.20%), Postives = 237/591 (40.10%), Query Frame = 3
Query: 363 EFFSLKPGSSMLTTSKLIDLESLCGSSDCYNGTKEFQVVALVMRD-KQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSL-------QETSTYFHFS-VSKDGKPILIIIKELD------AETIDTHRL---ILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPIL--ENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAISDQGII-----------------------------YLIKHLDYETAPKYEIPVRVTDGEFSSNGRVEVVIIDVNDCAPQFTLNPENLV-ISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLI 1985
+ FS+ S + T + +D E+ G E VVA + D + + + V D ND P F SY ++ E PG+ + + A D D + N Q++Y L E + H V ++ + + I ++ L ET + + I P + TA + + + D NDN P+F + +V L E + ++ A D D + + E K F G+I +L + +D E +Y+I V TDG F S V+V ++D ND +P V ++E+ L + D D ++ I+ P A F + E ++ +DR+ + SV + G + + ++ NDN+PQF + Y V V E+ + L V ATD D G+N ++ Y D + +F IDE SG I + LDRE Q Y++TV A D + TST V + V+DVND P + + E+ G+ + ++A D G N + ++++
Sbjct: 1324 DLFSVDAESGWVRTLRPLDREARAG--------HELAVVATDLGDPARLSATASVRVAVADANDCPPRFLRGSYAGDVPED-SAPGQVVAVVGADDADATPDNGQLTYYLTGAPRVAAEDALPGHGEHVLRESRTVAISVELLTILPPTVRETESACQFNIGVSIVDGGEPPLQTTAR--VVVRVSDENDNAPQFVEKRVQVKALARERSVAREAVCRVYARDADHGANAELSYSIDGGNEAGKFFIDPKDGVISTRNPCPVGTNDFLTVPCDIYVVVGEWKLHLKQPVDREERDRYQIEVTATDGAFVSKAVVDVAVLDANDNSPVCDKGLLYAVAVAEDVAPGIFLLLVSARDADIG-ANAAIQYTLHGPG-AEHFRMDSATGE------LFTLAPLDREAVPA-YALSVRATDGGGRSCQAEILVSLEDV----NDNAPQFPASHYAVSVYESTAVETLLTRVQATDSDLGLNRKVTYSFLD-SAGGHFAIDERSGIISLKRPLDREHQAVYELTVRAEDGDVFR-PLTSTVGVSVAVLDVNDNPPAFEQREYHAAAPEDAAPGSAVLSVLAISKDAGANAEVTYSVV 1888 HSP 7 Score: 100.908 bits (250), Expect = 1.421e-21 Identity = 140/536 (26.12%), Postives = 226/536 (42.16%), Query Frame = 3
Query: 543 VNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTS--RLQFIIVPTINVEIAKTFAISDQGIIYLIKHLDYETAPKYEIPVRVTDGE---FSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREK--QDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLT----NGSLLTKVSFDRESLSQVKFSLRITVRDIGEE 2117
+N P F+ Y+K++ E I ++L + L LI +S+ + + FS+ + ++ +I LD ET T +L + A + S A + + I++ D+NDN P FSQS Y + E + +LQ+ ATD D S L + I+ + S G+I + LDYE + VR +D +S+ V + + D+ND P F +SE + + D D++ D +E S ND M F + K I + + + R ++ + + + FT+T V + + AN +SP F +YV + EN + L V ATDKD G + Y I + F IDEN G+I + LDRE + + + ++A D TV + D ND P + +V GT I +++ATD D G N ++TL ++L G ++TK S L + S + D G E
Sbjct: 636 INKAMPIFERPFYSKSVPENIKPHTPILNLQAKSPEGLPLI-----FSITDGDPFNQFSIDFN-TGVVNVIGSLDHETQTTFKLTVRATDSVTGSH--AEVNLDILVQDVNDNPPLFSQSAYATTLSEAALIGISVLQVSATDADIGSNKALYYQIINNGKNSSECFYIDSSSGLILTSRFLDYEQNQVHNFLVRASDSGMPFLTSDVPVTITVTDINDNPPVFNQLLYEAFVSELAPRGHFVTRVQASDADASDTDK-LEYSILSGNDHMNFVV-------DGKSGIISISNLRKQTLAPQYRLNISVSDGV-----FTSTAQVHVNIQSANLHSPIFGQNEYVKEIPENSEVGTLLTLVQATDKDWGPLGHVSYSIVNQFAGDRFTIDEN-GQIFTSEPLDREDPLERVFDINIMAKDGG----GRVGFTTVKVIATDENDNKPTFVTNEYFGNVLARAEKGTAILQVLATDPDEGSNADLVYTLYKGESDAVEDVLEVQPLTGHVVTKESL--VGLEGSRMSFFVKAEDKGPE 1143 HSP 8 Score: 55.4546 bits (132), Expect = 9.699e-8 Identity = 66/257 (25.68%), Postives = 116/257 (45.14%), Query Frame = 3
Query: 1821 VHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPS---AFSHYFELLTN-GSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTA-VCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRE--TSKVIMVQFAD-IPPRLIDQNIS 2567
V + VI+ N+ P+ + SV E P T I +L ATD D F+++ S A F+L N G+L T S D E+ + L + VRD EI + A V + + D ND++P + +Y V ++ + S + D D GPN +VA+S++ ++ ++ F ++ T + + + ++ + + + A D+G PPR T+ ++V AD PP+ ++ S
Sbjct: 2 VEVSVINTNEHRPQFSRPRYEVSVAEETPPNTEILRLNATDRD--DTSSLTFSIVSSTDVASLRKFKLDYNTGALSTVESLDHET--KQSHILTVMVRD--SEIPVQKAYATVVVNVRDSNDHAP-------LFTSRHYEGR--------VVESAALGSAVLEVVALDRDRGPNAEVAYSIEAGNRNVGNS--FTIHPTMGILSVAKELDRAVVEAYELVVRAVDRGEPPRSATTAVRVLVTVADNAPPKFTSKDYS 235
BLAST of Protocadherin gamma vs. Ensembl Sea Lamprey
Match: ENSPMAT00000004043.1 (pep scaffold:Pmarinus_7.0:GL479143:9150:31231:-1 gene:ENSPMAG00000003698.1 transcript:ENSPMAT00000004043.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 150.984 bits (380), Expect = 7.876e-37 Identity = 173/737 (23.47%), Postives = 304/737 (41.25%), Query Frame = 3
Query: 369 FSLKPGSSMLTTSKLIDLESLCGSSDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILII--IKELD------AETIDTHRLILIAWNQNYPSRPT-ASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAISDQGIIYLIKHLDYETAPKYEIPVRVTD---GEFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTN-GSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLS-SKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADI 2537
FS+ P + +T S+ ++ E G V + D + + I+V+DVNDN P F +Y E G + A D D N Q+ + ++ + +F V +D I + ++ D ++ + ++ A ++ P + A++ I IV+ N N PRF + Y P+ V +IL + A D D+ Q I + ++ F + G ++L L + + + V D SS + + + N AP+F P L + EN + L + D D A V+ I S + + FDI+ + + + L E+D + ++ +++ +C G T V+++V D NDN P +DY + EN ++ + A D D N+ Y + D F +++ +G + LD E + Y++TV A + + H STA VH+ + VN+ PR + F V E+ P+G +G + ATD D G +G + L + S F + + G ++ DRE + +LR+ ++ G + V + I D ND P F +A + VS+ S + + + D D P G FS I S + + F +N I + + + +T++A D G PP + V++V D+
Sbjct: 485 FSIHPSTGEITVSRRLNREDRSG-----------YAVKVRASDPAWTVSTDVTIVVDDVNDNAPRFGQTAYYIEFPEPSEGEALVARV-SASDADDG-ANGQVFFFMRSQTE--NFRVGRDSGEIHSVRPLRYRDPAGGGSGANLNKYSFVVTAMDRGRPPLSSDATVTINIVVP--NANAPRFLRERYSTPVAATVRAGTRILDMSAVDPDRDVNGQ-IAYSVVGGNASRRFDVDAGGFLHLRASLAGDAGSIFSVTVEARDRGRPPLSSRATAIISVTEENQYAPRFAHPPLELSLPENHPAGSSLARVTATDTD-AGVNGAIVYSIASGDGSGLFDISRASGD------VLLVGELDYET---EKLYNLSVCAADGGWQAKTECSGVSISVTDVNDNPPMLNASDYYPVIPENAPSGTTVLVMDAVDADSPSNAVTMYSLDD-GEADLFVLNQKTGVLTTQGFLDYETKQTYELTVRAFNYP--DTFHYSTAQVHVQITGVNEYFPRFVQREYNFVVSESAPVGAPVGSVFATDRDAGIDGTVFYMLFGESRSKGFSVNEHTGEIIVSSQLDRE--REASATLRVIAKNAGSIRGFDVDEVLVNVAITDANDP-------PVFSSALYHG---------RVSEAASVGTHVVGVSAHDFDS-PPGWRTFSFLIQ--SGNAGRAFSINAHTGLIVVASPLDRESVPLYNLTVVAVDMGEPPATGTTVVVVALEDV 1169 HSP 2 Score: 148.673 bits (374), Expect = 3.563e-36 Identity = 159/557 (28.55%), Postives = 251/557 (45.06%), Query Frame = 3
Query: 528 IIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAISDQ-GIIYLIKHLDYETAPKYEIPVRV---TDGEFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQ-IKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQN-GKFIFTLIPS--AFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDN 2174
I V + N P F + ++ E + G S+ A D D +N I YS+ F +S+ +L++ ELD ET + L + A + + ++ T ++I + D+NDN P + S Y I EN +L + A D D S + + +++ A F ++ + G++ LDYET YE+ VR D S +V V I VN+ P+F N V+SE+ +G++ D+D A +D + + + F + E+ E I ++ ++DR++ VI N I V + + DAND P F+ Y RV E ++ VSA D D + + I + F I+ ++G I+ LDRE Y +TVVA D+ E T T V + + DVND P + S + V ENQP G + L A D D+ N G + F L+ S A+ YF L ++G L T DRE + +F L + + D G L+S + + +LD+NDN
Sbjct: 743 ISVTEENQYAPRFAHPPLELSLPEN-HPAGSSLARVTATDTDAG-VNGAIVYSIASGDGSGLFDISRASGDVLLV-GELDYETEKLYNLSVCAADGGWQAK-TECSGVSISVTDVNDNPPMLNASDYYPVIPENAPSGTTVLVMDAVDADSPS--NAVTMYSLDDGEADLFVLNQKTGVLTTQGFLDYETKQTYELTVRAFNYPDTFHYSTAQVHVQITGVNEYFPRFVQREYNFVVSESAPVGAPVGSVFATDRD-AGIDGTVFYMLFGESRSKGFSVNEHTGE------IIVSSQLDRER-EASATLRVIAKNAGSIRGFDVDEVLVNVAITDAND-PPVFSSALYHGRVSEAASVGTHVVGVSAHDFDSPPGWRTFSFLIQSGNAGRAFSINAHTGLIVVASPLDRESVPLYNLTVVAVDM--GEPPATGTTVVVVALEDVNDNGPFLLTS--SAKVTENQPAGMTVLNLEAGDPDLPPNKGPYTFQLLGSDPAWRGYFSLSSSGLLKTARPIDRE--QKPEFHLPVAIADAGSP-PLTSTVTLHLSVLDQNDN 1277 HSP 3 Score: 141.739 bits (356), Expect = 5.247e-34 Identity = 169/702 (24.07%), Postives = 296/702 (42.17%), Query Frame = 3
Query: 522 INIIVEDVNDNDPFFKNASYTKNIKEIIYGP-GKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKT--SRLQFIIVPTINVEIAKTFAI-SDQGIIYLIKHLDYETAPK--YEIPVRVTDGEFSSNGRVEVVIIDVNDCA--PQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVII-CNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKI----YPISLKSNQLFYLNVTEKAIKLKRSWQQSDG---NRFLVTLIAKDKGSPPRETSKVIMVQFADIP----PRLIDQNIS 2567
+ ++VED NDN P F A + E P G + L A D D L N ISY L+ HFSV+ I I LD E +++ L + A + ++S + + + D+ND+ PRF + Y + + + A D D L+F +++ + F++ +G+I+ + L P+ + VRV+DG V V + D P+F P + E+ T + + A S G+ D D + + +++ +D + + +++ D G F+A + + VLD NDN+P+F+ + + +V EN P+ ++ ++A DKD G+N Q+ Y I D F+++ NSG+I + +LDRE Y++TV ATD + +H T V I V D ND +PR + + V E+ +G + ++ D D G N F+L+ + T G + +RE S +++++ D + T V I + D NDN+P+ +I S+ ++ SD DDG NGQV F M+ + + S ++ + + ++ + G N++ + A D+G PP + + + +P PR + + S
Sbjct: 12 VTVLVEDENDNLPRFGAAELRAAVPEDA--PIGSDVALVNATDADAGL-NAIISYRLRGGDG--HFSVNPSTGQI-ITTASLDREGRESYVLEVTALDGGPTPGLSSSATLVVAVTDVNDHTPRFLNAPYVAYAPSSAPAGTAVFAVTARDADAGPNGDLRF----SLSGSASAGFSVDPRRGVIHAARALQ---GPRDDLTLTVRVSDGGAPPRSAVTTVTVRFRDAGEFPRFAPGPRSFSFREDQPPGTTITVVAARSSRRAGPVSYHLASGGNLGDVFAVD--------PQSGEVSVHRALDHEY---QHHYELVVEARDSGFPP-FSAYLKLEVDVLDINDNAPEFSSSRFWAKVPENTPPRT-IVVLTAVDKDSGINGQVDYSIIDGNIGNVFRVNPNSGEIRSVSTLDRENVASYELTVKATDRG-SPTQHC-TVKVLISVTDENDNSPRFTQIFSAH-VREDAAVGFPVLRVSTLDADEGPNAAITFSLLDPSLPFSIHPST-GEITVSRRLNREDRS--GYAVKVRASDPAWTV----STDVTIVVDDVNDNAPRFGQTAYYIEFPEPSEGEALVARVSA---------------SDADDGANGQVFFFMRSQTENFRVGRDSGEIHSV----RPLRYRDPAGGGSGANLNKYSFVVTAMDRGRPPLSSDATVTINIV-VPNANAPRFLRERYS 657 HSP 4 Score: 122.094 bits (305), Expect = 5.151e-28 Identity = 185/763 (24.25%), Postives = 322/763 (42.20%), Query Frame = 3
Query: 351 KESEEFFSLKPGSSMLTTSKLIDLESLCGSSDCYNGTKEFQVVALVMRDKQFIQELR----INIIVEDVNDNDPFFKNASYTKNIKEIIYGP-----GKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAISDQ-GIIYLIKHLDYETAPKYEIPVRVTDG---EFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKIN-----IYLNQEIDRDQINGDRRFSVII-CNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDR--------ESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPP---RETSKVIMVQFADIPPRL 2549
+ + FS+ P + + T+ +D E +E V+ + D L + + V DVND+ P F NA Y + Y P G ++ A D D N + +SL +++ FSV + ++ + L D + ++ + P R +A +T+ D + PRF+ E+ I + A + + + + N + FA+ Q G + + + LD+E YE+ V D FS+ ++EV ++D+ND AP+F+ + + ENT +T+ +V+ D DSGI N + + I + N ++N I +DR+ + + + + D G + T V ++V D NDNSP+FT + V+E+ +P++ VS D D+G N+ I + + D + F I ++G+I + L+RE + Y V V A+D A T + V I V DVND APR ++ E ++ ++ A+D D G NG+ F + + + F + + + V R + K+S +T D G LSS V I I+ N N+P+ Y S V+ T + I + D D NGQ+A+S+ + +++ F ++ + L+ S G+ F VT+ A+D+G PP R T+ + + + PR
Sbjct: 66 RGGDGHFSVNPSTGQIITTASLDREG-----------RESYVLEVTALDGGPTPGLSSSATLVVAVTDVNDHTPRFLNAPY------VAYAPSSAPAGTAVFAVTARDADAG-PNGDLRFSLSGSASA-GFSVDPR-RGVIHAARALQGPRDDLTLTVRVS-DGGAPPR-SAVTTVTVRFRDAGEF-PRFAPGPRSFSFREDQPPGTTITVVAARSSRRAGPVSYHLASGGN--LGDVFAVDPQSGEVSVHRALDHEYQHHYELVVEARDSGFPPFSAYLKLEVDVLDINDNAPEFSSSRFWAKVPENTPPRTI---VVLTAVDK---DSGI-------NGQVDYSIIDGNIGNVFRVNPNSGEIRSVSTLDRENVA---SYELTVKATDRGSPTQ-HCTVKVLISVTDENDNSPRFTQI-FSAHVREDAAVGFPVLRVSTLDADEGPNAAITFSLLDPSLP--FSIHPSTGEITVSRRLNREDRSGYAVKVRASDPAW-----TVSTDVTIVVDDVNDNAPRFGQTAYYIEFPEPSEGEALVARVSASDADDGANGQVFFFM--RSQTENFRVGRDSGEIHSVRPLRYRDPAGGGSGANLNKYSFVVTAMDRGRP-PLSSDATVTINIVVPNANAPRF-----LRERY----------STPVAATVRAGTRILDMSAVDPDRDVNGQIAYSV----VGGNASRRFDVDAG-GFLHLRASLAGDAGSIFSVTVEARDRGRPPLSSRATAIISVTEENQYAPRF 755 HSP 5 Score: 116.701 bits (291), Expect = 1.905e-26 Identity = 134/563 (23.80%), Postives = 226/563 (40.14%), Query Frame = 3
Query: 828 RPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAISDQGIIYLIKHLDYETAPKYEIPVRVTDG----EFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSE------RTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTH-QQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVS-FDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKD 2480
R T + +T++++D NDN PRF + R + E+ + + + ATD D + L II + G I LD E Y + V DG SS+ + V + DVND P+F P + T + + D D+ PN +RF ++ + S R I+ + RD + R S D G R T P+F +E+ P + V+A + + Y ++ + F +D SG++ ++LD E Q +Y++ V A D ++ + + V+D+ND AP + S V EN P T++ L A D D G NG+ +++I + F + N + VS DRE+++ + +++ T R + H + K V I + DENDNSP+ + I S V + + P+ + D D+GPN + FS+ L + F ++ + I + R + D + + V + A D
Sbjct: 5 RLTGTGTVTVLVEDENDNLPRFGAAELRAAVPEDAPIGSDVALVNATDAD--AGLNAIISYRLRGGDGHFSVNPSTGQIITTASLDREGRESYVLEVTALDGGPTPGLSSSATLVVAVTDVNDHTPRFLNAPYVAYAPSSAPAGTAVFAVTARDADAG------------PNGDLRFSLSGSASAGFSVDPRRGVIHAARALQGPRDDLTLTVRVS-----DGGAPPRSAVTTVTVRFRDA--GEFPRFAPGPRSFSFREDQPPGTTITVVAA--RSSRRAGPVSYHLASGGNLGDVFAVDPQSGEVSVHRALDHEYQHHYELVVEARDSGFPPF--SAYLKLEVDVLDINDNAPEFSSSRFWAKVPENTPPRTIV-VLTAVDKDSGINGQVDYSIIDGNIGNVFRVNPNSGEIRSVSTLDRENVASYELTVKATDRGSPTQ-HCTVK--VLISVTDENDNSPRFTQI----------------FSAHVREDAAVGFPVLRVSTLDADEGPNAAITFSL------LDPSLPFSIHPSTGEITVSRRLNREDRSGYAVKVRASD 516 HSP 6 Score: 88.1965 bits (217), Expect = 1.014e-17 Identity = 73/250 (29.20%), Postives = 109/250 (43.60%), Query Frame = 3
Query: 1791 NEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAK--DKGSPPRETSKVIMVQFAD 2534
E R T T TV + V D ND PR + +V E+ PIG+ + + ATD D G N + L H+ + G ++T S DRE + + L +T D G LSS + + + D ND++P+ P AY S + + +F T D D GPNG + FS+ S ++ F ++ I R+ Q G R +TL + D G+PPR + V+F D
Sbjct: 2 GEPRLTGTGTVTVLVEDENDNLPRFGAAELRAAVPEDAPIGSDVALVNATDADAGLNAIISYRLR-GGDGHFSVNPSTGQIITTASLDRE--GRESYVLEVTALDGGPTPGLSSSATLVVAVTDVNDHTPRFLNAP--YVAYAPS-------------SAPAGTAVFAVTARDADAGPNGDLRFSL-----SGSASAGFSVDPRRGVIHAARALQ---GPRDDLTLTVRVSDGGAPPRSAVTTVTVRFRD 225
BLAST of Protocadherin gamma vs. Ensembl Nematostella
Match: EDO46189 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RQM0]) HSP 1 Score: 206.068 bits (523), Expect = 1.130e-53 Identity = 194/696 (27.87%), Postives = 333/696 (47.84%), Query Frame = 3
Query: 501 QFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGP-GKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVS-KDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRP-TASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAISDQGIIYLIKHLDYETAPKYEIPVRVTDG---EFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKIN-----IYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVS-FDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADI---PP 2543
+F+ +NI + D NDN P F S NI E P G + A D+D+ N ++Y++ + F + + G IL + LD ETI ++ L++ A + P + TAS+ ++++ D+NDN PRF +S++ I E+ ++ +LQ+K DKD+ S I +++ E + F I G + LDYET Y++ V DG S+ +V++ II+VND P F + I E+ T + + D D G+P + FDI E N+ + KI+ I + + +DR+ +++++ + + T+ VLD NDN+P F Y + ENL + V+ATD+D+G N+++ Y +S + F+++ +G + + LDRE Q Y + V A D + ++ A + + + D+ND +P+ ++S T +V EN G+ I +++A+D D G NG+ +++I + F + + +T V DRE+L+ ++L I+ +D G +S+ V I + DENDNSP I A N + S + + S S + T +D D+G N QV Y I F +N + +K+ + + +T+ A D+GSP + K + V D+ PP
Sbjct: 769 RFMAATTVNISIADENDNQPTFTGPSRF-NISE--DSPTGTRVGQLTATDRDIGP-NGAVTYAIISGNQGNSFQLDPRSG--ILSVRSTLDRETIPSYTLVVKASDAGSPQQSITASIHVSVL--DVNDNAPRFEKSLFSGEIREDASVHSTVLQVKVEDKDEGS--NGAITLSLSGEGSDNFTIDSTGFVLSKTPLDYETTAAYQLTVTARDGGSPSKSATAQVKITIINVNDNVPSFVSPAQVTSIPEDVAINTHVVKLNATDSD------------GTP---LTFDIVEGNAGSSFKIDQSSGLISVAKRLDRETT---ANYTLVVRATETGSQGESVYNNATIRVLDVNDNAPVFNPGSYAKSLHENLPIGQTVAKVTATDRDEGENAKVTYELSVGDTSK-FEVNPATGLVTTKRPLDREDQASYSLRVTAMDHG--KPSQSAVAAITLTINDLNDNSPQFSQSKYTLTVTENTANGSNILRVLASDPDAGANGRVTYSIISGNHGNAFRIDSTTGRITVVGVVDREALA--SYNLTISAKDSGVPPWVSTA-FVAITVADENDNSP--------IFASN-------ETSYGIDEGVSIGSRVAVVTATDRDEGSNAQV-----FYSIVRGDTSAFAINAMNGVLTVKKEINRETVPTYTLTIRASDRGSPMMTSDKELTVVVNDVNDNPP 1410 HSP 2 Score: 191.815 bits (486), Expect = 3.001e-49 Identity = 197/684 (28.80%), Postives = 316/684 (46.20%), Query Frame = 3
Query: 522 INIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAI-SDQGIIYLIKHLDYETAPKYEIPVRVTDGEFS---SNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFEL-LTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADI---PPRL 2549
+ I + DVNDN P F +A YT ++ E + G ++ A DKD + N + YS +T F++ ++ + + LD E ++ L L ++ P T + + I ++DINDN P FS S Y+ + EN Q+ ATD+D ++ ++ I F I GII + K DYE +Y++ V+ D +V + I DVND +P F+ + + I E+T+ + + + D DS +E R S N F+I N+ +I ++ E+DR+ +S+ + G + +++ VT+ + D NDNSP F YV RV E+ P + + V+ATD DD N ++Y +SD+T F I+ ++G I LD EK+ Y VTV A D +S V + V DVND P+ +SL T +V EN G + + ATD D G NGK ++++ + F + G + T+V DRE+++ +SL I D G + + T V I I DENDN P T +S+ T + + T +D D GPNG V +++ IS F L+ + ++ + + + + + A D GSP + + I V D+ PR
Sbjct: 257 VEIEILDVNDNRPVFSSAQYTASVDEDV-AIGAAMVTVTASDKD-NGNNADLRYSFTSGNTNHAFTLDA-VTGVVTVSRSLDFEQRSSYALGLSVTDRGSPPL-TDTSHLLINVNDINDNPPVFSPSAYQSRVKENTPAGTQV---SATDRDSSTN-GALVFGIIKGNDDGVFTIDGSTGIISIAKSPDYENKTRYDLTVQARDRGVPVKYDTAQVTIFIEDVNDHSPVFSPSNYSKQIPESTVIGSTVVTVTATDLDSG-PRGRLEYRLISGNVKGAFNIDANSG------SIRVSSELDRETT---PSYSLQVEARDGGSTSRSSSTRVTIALQDINDNSPIFQ-GPYVFRVSESSSPGHQIGQVAATDADDSSNGDVRYALSDNT--DVFSINTSTGLITLKTQLDYEKKTQYMVTVTAKDGGTPS--RSSLTVVKVMVDDVNDNPPQFAKSLYTCTVGENLAAGVAVCYVTATDADSGANGKISYSILSGNENMAFAMDRFTGEITTRVPLDRETIA--SYSLTINADD-GSLVRFMAATTVNISIADENDNQPTF----------------TGPSRFNISEDSPTGTRVGQLTATDRDIGPNGAVTYAI----ISGNQGNSFQLDPRSGILSVRSTLDRETIPSYTLVVKASDAGSPQQSITASIHVSVLDVNDNAPRF 894 HSP 3 Score: 187.963 bits (476), Expect = 5.016e-48 Identity = 195/687 (28.38%), Postives = 306/687 (44.54%), Query Frame = 3
Query: 528 IIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDK--TSRLQFIIVPTINVEIAKTFAISDQGIIYLIKHLDYETAPKYEIPVRVTDG---EFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXX----XXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTN-GSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADI---PPRL 2549
I V+D NDN P F SY NI+E P + + A D+D S N I+YSL F + SK G+ + + LD ET D++ + + A++ + T +P+ I +DD+NDN P F+ S+Y+ + E+V + + QL A D D +RL + +V F + QG+I D ET Y++ +R DG S VE+ I+DVND P F+ + E+ + + D+D+ N +R+ T N+ ++ ++ ++R S + + + +R + T T V D NDN P F+ + Y RVKEN VSATD+D N + + I F ID ++G I +S D E + Y +TV A D + +++ TA V I + DVND +P + S + + E+ IG+ + + ATD D G G+ + LI F + N GS+ DRE+ +SL++ RD SS T V I + D NDNSP F Y + VS++ S I +D DD NG V +++ + +F +N + I LK +++VT+ AKD G+P R + V+ V D+ PP+
Sbjct: 58 IDVKDENDNAPEFPLNSYVFNIRE--NTPAAQVAIVTATDRD-SGTNAAITYSLFSGENKFMMN-SKTGE--IRTVTPLDHETKDSYTMRISAFDGKH----TTFVPL-ITVDDVNDNAPFFALSVYKTGVYEDVAVGSIVRQLTAVDLDVGINARLSYSLVS----GDTSYFTVDSQGVIRTKGAFDRETKASYQVALRAQDGGSPSRSGQATVEIEILDVNDNRPVFSSAQYTASVDEDVAIGAAMVTVTASDKDNGN------------NADLRYSFTSGNTNHAFTLDAVTGVVTVSRSLDFEQRSSYALG--LSVTDRGSPPLTDTSHLLINVNDINDNPPVFSPSAYQSRVKENTPAG---TQVSATDRDSSTNGALVFGIIKGNDDGVFTIDGSTGIISIAKSPDYENKTRYDLTVQARDRGV-PVKY-DTAQVTIFIEDVNDHSPVFSPSNYSKQIPESTVIGSTVVTVTATDLDSGPRGRLEYRLISGNVKGAFNIDANSGSIRVSSELDRETTP--SYSLQVEARDG-GSTSRSSSTRVTIALQDINDNSPI------FQGPYVFR----------VSESSSPGHQIGQVAATDADDSSNGDVRYALS------DNTDVFSINTSTGLITLKTQLDYEKKTQYMVTVTAKDGGTPSRSSLTVVKVMVDDVNDNPPQF 685 HSP 4 Score: 187.193 bits (474), Expect = 7.563e-48 Identity = 174/559 (31.13%), Postives = 276/559 (49.37%), Query Frame = 3
Query: 522 INIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKD--KTSRLQFIIVPTINVEIAKTFAI-SDQGIIYLIKHLDYETAPKYEIPVRVTDGEFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSV-IICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFEL-LTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPK 2183
+ I V D NDN P F + + I E + G + + A D+D N Q+ YS+ T + +G +L + KE++ ET+ T+ L + A ++ P T+ +T+V++D+NDN P F+ Y + EN + +L + A D D + L++ I+ + N E K F I S G+I LD+E +Y + V TD ++++ V + +I++ND P FT + EN+ T T + + D+DS + G +D D +R+ I+ +DR+ ++ +++ + D G N + VT+ +LD NDNSP+F + Y + EN P ++ATD D+G N++I Y +S F I +SG I Q LDRE + Y + + A D S+ T+ + VID+ND P IN S SV ENQP T + +++A+D D G N + F+L+ + F L T G + TKV DRE Q ++LRI V D G LSS V I ++DE+DN P+
Sbjct: 1294 VAITVADENDNSPIFASNETSYGIDEGV-SIGSRVAVVTATDRDEGS-NAQVFYSIVRGDTSAFAINAMNG--VLTVKKEINRETVPTYTLTIRASDRGSPMM-TSDKELTVVVNDVNDNPPVFNSQSYIGSVRENSAQSTSVLTVAADDSDVGANAVLRYSII-SGNDE--KRFKINSTSGVIMTTTPLDFEEKSQYGLEVTATDSKYTAKTNVTIRVINLNDITPAFTQQNYTASVRENSPTSTSVVKVSASDRDS-FGSLSYSIVGGKDSDKFSID------QRSGIISTA--DVLDRELVS---LYAIQVRVTDAG-NPPLSNLTWVTIKILDENDNSPKFDSSSYSSSILENSAPSSFSFKLAATDADEGTNARITYNLS---RNDAFMIGASSGVITLAQPLDRENKSTYDLAIQARDHGTPP--QASSITIRVTVIDINDHRPLINSSSLRGSVRENQPKETHVMRILASDADTGLNAELTFSLLSNEHKSVFTLDNTTGDISTKVPLDRE--QQAVYTLRIGVADKGNP-SLSSVADVIIDVIDEDDNCPR 1823 HSP 5 Score: 185.267 bits (469), Expect = 3.102e-47 Identity = 199/694 (28.67%), Postives = 313/694 (45.10%), Query Frame = 3
Query: 528 IIVEDVNDNDPFFKNASYTKNIKEIIYGP-GKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTS--RLQFIIVPTINVEIAKTFAI-SDQGIIYLIKHLDYETAPKYEIPVRVTDG---EFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGS---------PNDAMRFDITENNSERTKKINIYLNQEIDRDQ-------INGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFEL-LTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADI 2537
I V DVNDN P F SY K++ E + P G+++ A D+D N +++Y L T F V+ ++ + LD E ++ L + A + PS+ +A IT+ I+D+NDN P+FSQS Y + + EN IL++ A+D D + R+ + I I+ F I S G I ++ +D E Y + + D + S V + + D ND +P F N + I E + + + D+D EGS D F I N T K +EI+R+ I R S ++ +D + T+ V D NDN P F Y+ V+EN ++ V+A D D G N+ ++Y I ++ FKI+ SG I+ LD E++ Y + V ATD ++T+ V I VI++ND P + T SV EN P T + K+ A+D D G ++++ S F + +G + T DRE +S +R+T D G LS+ T V IKILDENDNSPK D+++ SI + S+ S F +D D+G N ++ + +L N F + + I L + + + + + + + A+D G+PP+ +S I V DI
Sbjct: 1087 IRVLDVNDNAPVFNPGSYAKSLHENL--PIGQTVAKVTATDRDEGE-NAKVTYELSVGDTS-KFEVNP-ATGLVTTKRPLDREDQASYSLRVTAMDHGKPSQ-SAVAAITLTINDLNDNSPQFSQSKYTLTVTENTANGSNILRVLASDPDAGANGRVTYSI---ISGNHGNAFRIDSTTGRITVVGVVDREALASYNLTISAKDSGVPPWVSTAFVAITVADENDNSPIFASNETSYGIDEGVSIGSRVAVVTATDRD-----------EGSNAQVFYSIVRGDTSAFAINAMNGVLTVK------KEINRETVPTYTLTIRASDRGSPMMTSDKEL----------TVVVNDVNDNPPVFNSQSYIGSVRENSAQSTSVLTVAADDSDVGANAVLRYSIISGNDEKRFKINSTSGVIMTTTPLDFEEKSQYGLEVTATDS-----KYTAKTNVTIRVINLNDITPAFTQQNYTASVRENSPTSTSVVKVSASDRD--SFGSLSYSIVGGKDSDKFSIDQRSGIISTADVLDRELVSLYAIQVRVT--DAGNP-PLSNLTWVTIKILDENDNSPKF-------------DSSSYSSSILENSAPSSFS--FKLAATDADEGTNARITY-------NLSRNDAFMIGASSGVITLAQPLDRENKSTYDLAIQARDHGTPPQASSITIRVTVIDI 1712 HSP 6 Score: 173.326 bits (438), Expect = 1.684e-43 Identity = 206/796 (25.88%), Postives = 332/796 (41.71%), Query Frame = 3
Query: 231 GTIKYWIKENQPPGLVVGNLLDNLPYKQYFISPG---YHFVLQKESEEFFSLKPGSSMLTTSKLIDLESL------CGSSDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQ-ETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSR-PTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAISDQ--GIIYLIKHLDYETAPKYEIPVRVTDGEFSSNGR-----VEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDR-DQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADIPPRLIDQN 2561
G ++ I E+ P G VG L I P + ++ F L P S +L+ +D E++ +SD G+ + + A I++ V DVNDN P F+ + ++ I+E + + + DKD N I+ SL E S F D ++ LD ET ++L + A + PS+ TA + ITI+ ++NDN P F I E+V +N +++L ATD D T L F IV +F I DQ G+I + K LD ET Y + VR T E S G + ++DVND AP F + EN + + D+D ++ E S D +F++ T K + +DR DQ + R + + D G ++ NDNSPQF+ + Y + V EN ++ V A+D D G N ++ Y I H F+ID +G+I + +DRE Y +T+ A D + STA V I V D ND +P + ++ + E IG+ + + ATD D G N + ++++ S + NG L K +RE++ ++L I D G + S K + + + D NDN P N+ +V + + ++ + D D G N + +S+ IS + F +N T I + +++ + + A D + + ++ DI P QN
Sbjct: 792 GPSRFNISEDSPTGTRVGQLT----ATDRDIGPNGAVTYAIISGNQGNSFQLDPRSGILSVRSTLDRETIPSYTLVVKASDA--GSPQQSITA------------SIHVSVLDVNDNAPRFEKSLFSGEIREDASVHSTVLQV-KVEDKDEGS-NGAITLSLSGEGSDNFTI----DSTGFVLSKTPLDYETTAAYQLTVTARDGGSPSKSATAQVKITII--NVNDNVPSFVSPAQVTSIPEDVAINTHVVKLNATDSDGTP-LTFDIVEG---NAGSSFKI-DQSSGLISVAKRLDRETTANYTLVVRAT--ETGSQGESVYNNATIRVLDVNDNAPVFNPGSYAKSLHENLPIGQTVAKVTATDRDEG--ENAKVTYELSVGDTSKFEVNPATGLVTTK------RPLDREDQASYSLRVTAM---DHGKPSQSAVAAITLTINDL-NDNSPQFSQSKYTLTVTENTANGSNILRVLASDPDAGANGRVTYSIISGNHGNAFRIDSTTGRITVVGVVDREALASYNLTISAKDSGVPP--WVSTAFVAITVADENDNSPIFASNETSYGIDEGVSIGSRVAVVTATDRDEGSNAQVFYSIVRGDTSAFAINAMNGVLTVKKEINRETVP--TYTLTIRASDRGSPMMTSDK-ELTVVVNDVNDNPPVF---------------NSQSYIGSVRENSAQSTSVLTVAADDSDVGANAVLRYSI----ISGNDEKRFKINSTSGVIMTTTPLDFEEKSQYGLEVTATDSKYTAKTNVTIRVINLNDITPAFTQQN 1518 HSP 7 Score: 169.474 bits (428), Expect = 2.211e-42 Identity = 184/689 (26.71%), Postives = 306/689 (44.41%), Query Frame = 3
Query: 528 IIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKP-ILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKT--SRLQFIIVPTINVEIAKTFAI-SDQGIIYLIKHLDYETAPKYEIPVRVTDGEFSSNGRVEVVII---DVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENN---SERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFEL-LTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETS---KVIMVQFADIPPRLI 2552
I V D+NDN P F ++Y +KE G + A D+D S N + + + + + F++ DG I+ I K D E + L + A ++ P + + +TI I+D+ND+ P FS S Y I E+ + ++ + ATD D RL++ + I+ + F I ++ G I + LD ET P Y + V DG +S V I D+ND +P F P +SE++ +G + D D S N +R+ +++N S T I L ++D ++ + + D G +R + T + NDN PQF + Y V ENL + V+ATD D G N +I Y I F +D +G+I LDRE Y +T+ A D ++ +R + TV+I + D ND P + F++ E+ P GT +G+L ATD DIG NG + +I + F+L +G L + + DRE++ ++L + D G S ++ + +LD NDN+P+ + S + + S +S + D D+G NG + S+ S + + F ++ T + K + +T+ A+D GSP + + K+ ++ D P +
Sbjct: 364 INVNDINDNPPVFSPSAYQSRVKENTPA-GTQV---SATDRDSS-TNGALVFGIIKGNDDGVFTI--DGSTGIISIAKSPDYENKTRYDLTVQARDRGVPVK-YDTAQVTIFIEDVNDHSPVFSPSNYSKQIPESTVIGSTVVTVTATDLDSGPRGRLEYRL---ISGNVKGAFNIDANSGSIRVSSELDRETTPSYSLQVEARDGGSTSRSSSTRVTIALQDINDNSPIFQ-GPYVFRVSESSSPGHQIGQVAATDADD------------SSNGDVRYALSDNTDVFSINTSTGLITLKTQLDYEKKT--QYMVTVTAKDGGTPSRSSLTVVKVMVDDV-NDNPPQFAKSLYTCTVGENLAAGVAVCYVTATDADSGANGKISYSILSGNENMAFAMDRFTGEITTRVPLDRETIASYSLTINADDGSL--VRFMAATTVNISIADENDNQPTFT-GPSRFNISEDSPTGTRVGQLTATDRDIGPNGAVTYAIISGNQGNSFQLDPRSGILSVRSTLDRETIP--SYTLVVKASDAGSP-QQSITASIHVSVLDVNDNAPRF---------------EKSLFSGEIREDASVHSTVLQVKVEDKDEGSNGAITLSL-----SGEGSDNFTIDSTGFVLS-KTPLDYETTAAYQLTVTARDGGSPSKSATAQVKITIINVNDNVPSFV 998 HSP 8 Score: 166.392 bits (420), Expect = 2.097e-41 Identity = 179/614 (29.15%), Postives = 285/614 (46.42%), Query Frame = 3
Query: 519 RINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAI-SDQGIIYLIKHLDYETAPKYEIPVRVTDGEFSSNGR---VEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSP------KISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNG 2330
++ I +EDVND+ P F ++Y+K I E G ++ A D D S ++ Y L + F++ + I + ELD ET ++ L + A + + ++S +TI + DINDN P F Q Y + E+ HQI Q+ ATD D +S + N ++ F+I + G+I L LDYE +Y + V DG S V+V++ DVND PQF + + EN + + D DS + I S N+ M F + E T ++ +DR+ I +S+ I D G RF A TV +++ D NDN P FT + E+ + ++ATD+D G N + Y I F++D SG + +LDRE Y + V A+D + + TA++H+ V+DVND APR +SL + + E+ + + + ++ D D G NG +L S F + + G +L+K D E+ + + L +T RD G S+ V I I++ NDN P +++ IP+ +A + V K +T+S P TF D+ +G G
Sbjct: 463 QVTIFIEDVNDHSPVFSPSNYSKQIPESTV-IGSTVVTVTATDLD-SGPRGRLEYRLISGNVKGAFNIDANSGSIR-VSSELDRETTPSYSLQVEARDGGS-TSRSSSTRVTIALQDINDNSPIF-QGPYVFRVSESSSPGHQIGQVAATDADDSSNGDVRYALSDNTDV---FSINTSTGLITLKTQLDYEKKTQYMVTVTAKDGGTPSRSSLTVVKVMVDDVNDNPPQFAKSLYTCTVGENLAAGVAVCYVTATDADSG-ANGKISYSILSGNENMAFAMDRFTGEITTRV------PLDRETI---ASYSLTINADDGSLVRFMAATTVNISIADENDNQPTFTGPSR-FNISEDSPTGTRVGQLTATDRDIGPNGAVTYAIISGNQGNSFQLDPRSGILSVRSTLDRETIPSYTLVVKASDAG--SPQQSITASIHVSVLDVNDNAPRFEKSLFSGEIREDASVHSTVLQVKVEDKDEGSNGAITLSLSGEG-SDNFTIDSTGFVLSKTPLDYETTA--AYQLTVTARDGGSP-SKSATAQVKITIINVNDNVPSFVSPAQVTSIPEDVAINTH-----------VVKLNATDSDGTPLTF-DIVEGNAG 1039 HSP 9 Score: 119.013 bits (297), Expect = 7.019e-27 Identity = 156/624 (25.00%), Postives = 268/624 (42.95%), Query Frame = 3
Query: 681 YSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIV-IDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAISDQGIIYLIKHLDYETAPKYEIPVRVTDGEFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREG---SPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFEL-LTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADI 2537
YS+ + + F++ I ++ D E+ +RL ++A Q+ +R + ++ + D NDN P F + Y I EN Q+ + ATD+D S I ++ K S G I + LD+ET Y + + DG+ ++ + + + DVND AP F L+ + E+ +++ + D +D GI R D F + RTK DR+ + V + G + + TV + +LD NDN P F+ Y V E++ ++ V+A+DKD+G N+ ++Y + F +D +G + +SLD E++ Y + + TD + T T+ + I+V D+ND P + S V EN P GT ++ ATD D NG +F +I F + + G + S D E ++ ++ L + RD G + + V I I D ND+SP S NYS + ++ S + T +DLD GP G++ + + IS F ++ +I++ + + + + A+D GS R +S + + DI
Sbjct: 1 YSIMDGNDQGMFTIDSSTGSITTTGRKFDRESESRYRLTVLA--QDAANRCHKGRTVVVIDVKDENDNAPEFPLNSYVFNIRENTPA-AQVAIVTATDRD--SGTNAAITYSLFSGENKFMMNSKTGEIRTVTPLDHETKDSYTMRISAFDGKHTTFVPL-ITVDDVNDNAPFFALSVYKTGVYEDVAVGSIVRQLTAVD-----LDVGINARLSYSLVSGDTSYFTVDSQGVIRTKG-------AFDRET---KASYQVALRAQDGGSPSRSGQATVEIEILDVNDNRPVFSSAQYTASVDEDVAIGAAMVTVTASDKDNGNNADLRYSFTSGNTNHAFTLDAVTGVVTVSRSLDFEQRSSYALGLSVTDRGSPPL--TDTSHLLINVNDINDNPPVFSPSAYQSRVKENTPAGT---QVSATDRDSSTNGALVFGIIKGNDDGVFTIDGSTGIISIAKSPDYE--NKTRYDLTVQARDRGVPVKYDTA-QVTIFIEDVNDHSPVFS-------PSNYSKQ--------IPESTVIGSTVVTVTATDLDSGPRGRLEYRL----ISGNVKGAFNIDANSGSIRVSSELDRETTPSYSLQVEARDGGSTSRSSSTRVTIALQDI 576 HSP 10 Score: 112.849 bits (281), Expect = 5.838e-25 Identity = 128/482 (26.56%), Postives = 223/482 (46.27%), Query Frame = 3
Query: 522 INIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAISDQ-GIIYLIKHLDYETAPKYEIPVRVTDG---EFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKIN--IYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCD 1949
+ ++V DVNDN P F + SY +++E S+ A D D+ N + YS+ + F ++ +++ LD E + L + A + Y TA +TI + ++ND P F+Q Y + EN + ++++ A+D+D L + IV + + F+I + GII LD E Y I VRVTD S+ V + I+D ND +P+F + + I EN+ + + D D EG+ N + ++++ N++ + I L Q +DR+ N I D G + ++ T+ +TV+D ND+ P + V+EN + ++ + A+D D G+N+++ + + + H+ F +D +G I LDRE+Q Y + + D + +S A V I VID +D PR + ++ E+ P G I ++ A D D
Sbjct: 1398 LTVVVNDVNDNPPVFNSQSYIGSVREN-SAQSTSVLTVAADDSDVGA-NAVLRYSIISGNDEKRFKINSTSG-VIMTTTPLDFEEKSQYGLEVTATDSKY----TAKTNVTIRVINLNDITPAFTQQNYTASVRENSPTSTSVVKVSASDRDSFGSLSYSIVGGKD---SDKFSIDQRSGIISTADVLDRELVSLYAIQVRVTDAGNPPLSNLTWVTIKILDENDNSPKFDSSSYSSSILENSAPSSFSFKLAATDAD-----------EGT-NARITYNLSRNDAFMIGASSGVITLAQPLDRE--NKSTYDLAIQARDHGTPPQ-ASSITIRVTVIDINDHRPLINSSSLRGSVRENQPKETHVMRILASDADTGLNAELTFSLLSNEHKSVFTLDNTTGDISTKVPLDREQQAVYTLRIGVADKGNPSL--SSVADVIIDVIDEDDNCPRFQPTEYNVTISESLPRGASIVQVTARDID 1852
BLAST of Protocadherin gamma vs. Ensembl Nematostella
Match: EDO35412 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SLK9]) HSP 1 Score: 186.037 bits (471), Expect = 1.578e-47 Identity = 202/754 (26.79%), Postives = 335/754 (44.43%), Query Frame = 3
Query: 354 ESEEFFSLKPGSSMLTTSKLIDLESLCGSSDCYNGTKEFQVVAL--VMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSL---QETSTYFH-------------FSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAISDQGIIYLIKHLDYETAPKYEIPVRVTD-GEFSSNGR--VEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFA-DIPPRL 2549
+S F L + ++ T + +D E + F V+A + K + + IN++ D NDN P K I Y P + D +A + SLIN I+Y L ++++T F V G + + K LD E + + L L ++ PSR T + I + D+NDN P F+ + Y I E + +LQL ATD D+ T ++ G++ K LD E I + D G G V V IID ND P+F + ISE + + D DS D+G E S +DA + E N T+ ++ ++DR + F+V+ D G + + ++ V LT+ D NDN+P F +Y + EN +P L+ V+ATD D+G N+ I Y I + F ID ++G I + SLD E ++++ + + A D TA V++ V++ D P + F+VYEN P GT++G++ AT D +NG + ++ ++ F + + G ++ K++ D + + ++ L + R +G LS++ V I++LD NDN+P+ S T+ + + T ++ DLD G NG V Y ++ + L ++N T IKL R D ++ V ++A D GSPP+ ++ I + + + PP+
Sbjct: 251 QSNSIFDLDSSTGVIRTKQNLDFE--------VKNSYTFNVIASDGGVPSKNDLATVTINVL--DTNDNSPQLK----------ITYLPPHNGD--KAIRSENSLINTNIAYILVTDKDSNTNSQTELKITNGDDEGCFKVEFLGFYFIQLQKPLDRELVPFYNLTLNVTDKGVPSRSTLGF-VLIDVTDVNDNSPAFTSNAYTANISELAQNGSYVLQLNATDPDEGDNGTVSYSITGGNDLGWFQVDFQSGLVTTAKPLDREQVSSVTITITAQDHGSAPKTGSTTVTVTIIDGNDNKPRFMKSSYKGTISEGASIGATVLQVSATDVDSG--DNGRITYEISSSDAQVNGLFELN---TQTGVLWTKSQLDR-ETKSLYSFTVL-AKDHG-DPQLMSSVKVELTISDINDNAPVFYPVEYFASIMEN-EPPGKLLQVTATDADEGTNAVISYDIIGGNNNGNFSIDSSTGVISTLASLDHEVEEFFSLIISAKDGG--NKYAAKTAVVNVTVLNKADNLPVFLYEMYNFTVYENVPKGTLVGRVYATTKD--KNGSISYAIVSGDPTNLFLVDSTGGII-KINGDMDREEKAQYLLAVIAR-VGTVKPLSAQATVNIEVLDRNDNAPQFS---------------TSSVIVDIDGTWLVGQVVYNAAAVDLDAGKNGLVR-----YQLTSNAEGLLWINSTSGVIKLARKLTDGDETQYTVQVLASDSGSPPQHSTMTIHITLSINHPPKF 946 HSP 2 Score: 172.94 bits (437), Expect = 1.643e-43 Identity = 211/809 (26.08%), Postives = 344/809 (42.52%), Query Frame = 3
Query: 213 SSSLSFGT-IKYWIKENQPPGLVVGNLLDNLPYKQYFISPGYHFVLQKESEEFFSLKPGSSMLTTSKLIDLESLCGSSDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSID------LPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPI-----LIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAI----SDQGIIYLIKHLDYETAPKYEIPVRVTDGEFSSNGRVEVV---IIDVNDCAPQFTL------NPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKIN------IYLNQEIDRDQINGDRRFSVIICN--DMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPS--AFSHYFELLT-NGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSP---IFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMV 2522
++S+S G+ + ++E QPPG VG + ++ S + F + +++T+ ID E+ S Q+ L + Q + + + V+D+NDN+P F YT I+E S+D + A D D N + Y++ FS+ P +I K LD ET D ++L + A ++ P+ L I I I D ND+ P F+Q+ Y I EN + IL++ A D+D S I I+ + ++ +I S G+I ++LD+E Y V +DG S + V ++D ND +PQ + N + + SEN+L T + I+V D+DS + N IT + E K+ I L + +DR+ + F + N D G+ +R T F + NDNSP FT Y + E + ++ ++ATD D+G N + Y I+ +F++D SG + + LDRE+ +T+ A D T + TV + +ID ND PR +S ++ E IG + ++ ATD D G NG+ + + S + FEL T G L TK DRE+ S +S + +D G+ L S V + I D NDN+P + F + N P + T +D D+G N +++ + I +N F ++ + I S F + + AKD G+ + V+ V
Sbjct: 3 AASVSAGSSYTFHVQEEQPPGTYVGKVDGASAFEG--------------SPKQFGFNSNTGVISTTARIDRETTTQIS--------LQLRTLNPSN----QPISVQVQVDDINDNEPRFPTLYYTLRIRE-------SMDVNTTNPINTATDPDAGN-NGTVDYTIASGDNTATFSLGTTACPTGSTLCVITKKPLDRETTDFYQLNITATDRGTPALMGYCL-INITILDENDHAPVFTQNSYLGSIAENTKPGVSILRVSAADRDSGSNGD--IKYAIDWDAIQSNSIFDLDSSTGVIRTKQNLDFEVKNSYTFNVIASDGGVPSKNDLATVTINVLDTNDNSPQLKITYLPPHNGDKAIRSENSLINTNIAYILVTDKDS------------NTNSQTELKITNGDDEGCFKVEFLGFYFIQLQKPLDRELV----PFYNLTLNVTDKGVPSRSTLGFVLIDVTDV-NDNSPAFTSNAYTANISELAQNGSYVLQLNATDPDEGDNGTVSYSITGGNDLGWFQVDFQSGLVTTAKPLDREQVSSVTITITAQDHG--SAPKTGSTTVTVTIIDGNDNKPRFMKSSYKGTISEGASIGATVLQVSATDVDSGDNGRITYEISSSDAQVNGLFELNTQTGVLWTKSQLDRETKSL--YSFTVLAKDHGDP-QLMSSVKVELTISDINDNAPVFYPVEYFASIME-------------------NEPPGKLLQVTATDADEGTNAVISYDI----IGGNNNGNFSIDSSTGVISTLASLDHEVEEFFSLIISAKDGGNKYAAKTAVVNV 729 HSP 3 Score: 142.124 bits (357), Expect = 5.541e-34 Identity = 179/645 (27.75%), Postives = 287/645 (44.50%), Query Frame = 3
Query: 639 AFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAIS-DQGIIYLIKHLDYETAPKYEIP-VRVTDGEFSSN--------GRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSG---IECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKV-SFDRESLSQVK--FSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDG-NRFLVTLIAKDKGSPPRETSKVIMV 2522
A D+D S N Q+ YS+ + + F + GK L I K L ++ LI+ A + PS +AS+P+TI I D ND+ F + +R + EN + L A D SR + I+ I+ E FA+ G I LD E K V + E N V V + D+ND AP F+ + +SE +L + + I D D D+ G+ D +F I + E ++L++ +DR+ + +++++ N +T + +TV D+ND P F +DY V + E+ +I+++A+DKD G N IKY IS+ F ++ +G++I +SLD E Y++T+ A D + I +ST V ++V+DVND AP T +V EN G +G+ A+D D G N F++ S F + + +T + + D E++ + F L + D G LS++ ++ +++ DENDNSP P AA S N + T D D NG+V + S+ S Y N+ +L+ Q D + +T+ A D G P R+T V+ V
Sbjct: 970 AVDQD-SGKNGQLFYSIPQGNEEGLFGIFPGGK--LYIRKSLLQALKGSYDLIVRATDGGVPSF-SASVPVTIYIQDSNDHRSLFVNNTFRFAVAENSSPGTLVGTLVAHALDH-SRTKDIVYSLISSE--SHFAVDVRSGQITTRVRLDREELIKNTGSNVYIMQAEAMYNDTTIKRDKAIVIVTVTDLNDNAPVFSRAVYAITVSELSLPGSPVFRIKAMDADEG--DNAKFFYSLVSGTGMD--KFFINSSTGE------LHLSKTLDRETTS---SYNLVVKATDASNANLYSTAKIEITVGDSNDQRPVFPESDYTVNITEDALIGSLVINLNASDKDIGQNGLIKYSISNGNLAAMFDVESATGRLIVAKSLDFETTQLYELTITAQDHGL--IPLSSTVNVTVNVLDVNDNAPLFPTQPVTLTVRENVNTGFPVGRCTASDRDTGTNAHIAFSMYSQTPSKTFSVNSATCEITTIAAIDLETMPAGRDSFQLVVMATDQGSP-KLSTRKSITVQVTDENDNSPGFVSPP--AAAAGSSLN------------------VMTITAEDPDRNSNGKVTY-------SIISGNNGYFNLHPSTGQLQMIHQIPDNPTIYQLTIQASDGGQPSRQTQTVVSV 1564 HSP 4 Score: 140.969 bits (354), Expect = 1.190e-33 Identity = 176/692 (25.43%), Postives = 306/692 (44.22%), Query Frame = 3
Query: 468 FQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQ-NYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAI-SDQGIIYLIKHLDYETAPKYEIPVRVTDGE---FSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQ-EIDRDQINGDR-RFSV-IICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHL-------------SSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKD 2480
F V+A D Q + +++ + + D+NDN P F Y +I E PGK + + A D D N ISY + + +FS+ ++ + LD E + LI+ A + N + TA + +T++ + DN P F +Y + ENV + ++ AT KDK + + IV + + F + S GII + +D E +Y + V G S+ V + ++D ND APQF+ + VI + + T L VVY+ + +D+G N +R+ +T +N+E IN ++ R +GD +++V ++ +D G + + + ++ P+FTL+ YV V + Y V A D+D G N Q+ Y I + F I GK+ +SL + + Y + V ATD + + T++I D ND + F+V EN GT++G L+A D + +++LI S+ SH+ + +G + T+V DRE L +++ G +++ K V + + D NDN+P S A Y +ITVS+ SP+F D D+G N + +S+ +S F++N + + L ++ + + + + + A D
Sbjct: 605 FTVLAKDHGDPQLMSSVKVELTISDINDNAPVFYPVEYFASIMEN-EPPGKLLQV-TATDADEG-TNAVISYDIIGGNNNGNFSIDSS-TGVISTLASLDHEVEEFFSLIISAKDGGNKYAAKTAVVNVTVL--NKADNLPVFLYEMYNFTVYENVPKGTLVGRVYATTKDKNGSISYAIV---SGDPTNLFLVDSTGGIIKINGDMDREEKAQYLLAVIARVGTVKPLSAQATVNIEVLDRNDNAPQFSTSS---VIVD--IDGTWLVGQVVYNAAAVDLDAG-------KNGLVRYQLT-SNAEGLLWINSTSGVIKLARKLTDGDETQYTVQVLASDSGSPPQHSTMTIHITLSI---NHPPKFTLSSYVTHVLASQPLSYQFFYVVAVDQDSGKNGQLFYSIPQGNEEGLFGIFP-GGKLYIRKSLLQALKGSYDLIVRATDGGVPSFSASVPVTIYIQ--DSNDHRSLFVNNTFRFAVAENSSPGTLVGTLVAHALDHSRTKDIVYSLI-SSESHFAVDVRSGQITTRVRLDREEL----------IKNTGSNVYIMQAEAMYNDTTIKRDKAIVIVTVTDLNDNAPVFSR-----AVY----------AITVSELSLPGSPVFRIKAMDADEGDNAKFFYSL----VSGTGMDKFFINSSTGELHLSKTLDRETTSSYNLVVKATD 1238 HSP 5 Score: 87.8113 bits (216), Expect = 2.016e-17 Identity = 137/525 (26.10%), Postives = 211/525 (40.19%), Query Frame = 3
Query: 366 FFSLKPGSSM-----------LTTSKLIDLESLCGSSDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSV-SKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTAS-LPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAISDQGI-IYLIKHLDYETAPK----YEIPVRVTDG---EFSSNGRVEVVIIDVNDCAPQFTLNPENLVISE-NTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFS--------VIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDY-YQVTVVATDLAINEIRHTSTATVHIHVIDVN 1847
F+SL G+ M L SK +D E+ + YN V A + +I I V D ND P F + YT NI E I+L A DKD+ N I YS+ + F V S G+ LI+ K LD ET + L + A Q++ P +S + +T+ + D+NDN P F + + ENV + + A+D+D T I + +KTF+++ I I +D ET P +++ V TD + S+ + V + D ND +P F P S N +T T E + + N + + I N N Y N Q+ + I +D G +R T T P F+ DY V EN ++ V A +N I+Y+++ + + F++ +++G + + +DRE + + V A D R TS+ATV I V DVN
Sbjct: 1195 FYSLVSGTGMDKFFINSSTGELHLSKTLDRET----TSSYN----LVVKATDASNANLYSTAKIEITVGDSNDQRPVFPESDYTVNITEDALIGSLVINL-NASDKDIGQ-NGLIKYSISNGNLAAMFDVESATGR--LIVAKSLDFETTQLYELTITA--QDHGLIPLSSTVNVTVNVLDVNDNAPLFPTQPVTLTVRENVNTGFPVGRCTASDRD-TGTNAHIAFSMYSQTPSKTFSVNSATCEITTIAAIDLETMPAGRDSFQLVVMATDQGSPKLSTRKSITVQVTDENDNSPGFVSPPAAAAGSSLNVMTITA------------------EDPDRNSNGKVTYSIISGN-------NGYFNLHPSTGQLQMIHQIPDNPTIYQLTIQASDGGQPSRQTQTVVSVFKEGPIG-GGPTFSSADYQGSVTENKVAGTSVVTVLAAYPQSSLNGNIEYYLTSDSSKGGFEVVKSTGVVKTTRGIDREGMGASFNLVVYAVDKQGPSAR-TSSATVTITVQDVN 1677
BLAST of Protocadherin gamma vs. Ensembl Nematostella
Match: EDO48237 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RKF4]) HSP 1 Score: 177.178 bits (448), Expect = 1.259e-44 Identity = 204/757 (26.95%), Postives = 347/757 (45.84%), Query Frame = 3
Query: 312 QYFISPGYHFVLQKESEEFFSLKPGSSMLTTSKLIDLESLCGSSDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYS-LQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAISD-QGIIYLIKHLDYETAPKYEIPVRVTD-GE--FSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSV-IICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKF---IFTLIPSAFSHYFEL-LTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETS---KVIMVQFADIPP 2543
+Y +SP + + S +FS+ + ++TT + +D E L F+V A + + + I V DVNDN P F+ Y +I E G + RA D D S N ++ Y L FS+ + + ++K+LD E + T+ L + A +Q P R +A++ + I + D+ND P+FS+ +Y I E+V +N + ++ATD D+ S + + ++ F+I+ G + + + LDYE + + V D G+ + V++ +IDVND APQF + +I EN + YD+D + E + + F I EN I + +E+DR+++ +F+ I D G+ + T +T+T+LD NDN P+F+ +Y + EN + ++ V A D D G + + +S H + F+I+ G I +L+ + Y +V A+D + +STA V+++V D N AP + V E+ +GT + ++ATD D G N K I TL+P F + T G + T S DRE + +F + T I + L +K+ V I I D NDN P + + P + A V + + + SD D G N Q+ +S + + F ++ T+ I+ + + + +T++A D+G+PP + S KVI+ D PP
Sbjct: 56 RYSMSPSQNLM----SATYFSIDQITGVITTKRGLDREFL--------DRHFFRVKAEDGGEPSLEGYMDLTINVLDVNDNGPIFERNIYAADIPED-KSIGDFVLAVRASDAD-SGSNGEVKYCILNSDGDNSAFSIGEVSGAV-TVMKKLDREKVPTYTLQVQAQDQGNPPR-SATVTVKITLLDVNDCTPQFSKKVYSATIREDVPVNQLVTTVRATDCDQGSNGE-VFFEIVSGNDMNFFSINRINGEVRVKQKLDYEMIGVFNLLVTAQDKGQPFLYNQTTVDIALIDVNDNAPQFVSSHFQTMIPENYAVGQEFYRVQAYDKDHG---TNGEITFSFMQNDLPFSINENTG------GISIKEELDREKVP---KFTFGIKARDKGVPFK-EGTAQITITLLDINDNPPKFSQEEYHTSIAENSRWGTSVLQVKAIDPDSGPTNVVYSIVSSSGHDRCFRINPQ-GLITLSCTLNYNTKHVYVFSVSASDGML-----SSTALVYVNVTDSNTHAPEFKRRSYSAEVKEDASLGTSVLTVLATDRDTGSNAKISYSIATLVPE-----FSVDETTGVIKTAGSLDREKVDTYRFEVTATDHGIPQ---LKAKSFVYIHIADVNDNDP-VFLKPSYEAK--------------VREDIRPGGRVIEVSASDADIGKNAQIIYS---FASNGDGQGTFTIDSTQGIIRTLKPLDRETIPEYELTVVATDQGTPPGQASVKVKVILEDVKDSPP 750 HSP 2 Score: 169.088 bits (427), Expect = 3.710e-42 Identity = 164/562 (29.18%), Postives = 266/562 (47.33%), Query Frame = 3
Query: 522 INIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKT-SRLQFIIVPTINVEIAKTFAISDQGIIYLIKHLDYETAPKYEIPVRVTDGEFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDIT----ENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKY-FISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVI--DVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTN-GSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSP 2180
++I + DVNDN P F ++ + I E Y G+ +A+DKD N +I++S + F + + G + I +ELD E + + A ++ P + + ITI + DINDN P+FSQ Y I EN +LQ+KA D D + + + IV + + + F I+ QG+I L L+Y T Y V +DG SS V V + D N AP+F + + E+ T + ++ D+D+ N + + I E + + T + I +DR++++ RF V D GI + A V + + D NDN P F Y +V+E+++P +I+VSA+D D G N+QI Y F S+ Q F ID G I ++ LDRE Y++TVVATD A+V + VI DV D P + L +V E+ P + + + A D+ +++++ F++ N G++ T + D E+ S+ + ++R T+ E T V + + D NDN+P
Sbjct: 325 VDIALIDVNDNAPQFVSSHFQTMIPEN-YAVGQEFYRVQAYDKDHG-TNGEITFSFMQNDLPFSINENTGG---ISIKEELDREKVPKFTFGIKARDKGVPFK-EGTAQITITLLDINDNPPKFSQEEYHTSIAENSRWGTSVLQVKAIDPDSGPTNVVYSIVSSSGHD--RCFRINPQGLITLSCTLNYNTKHVYVFSVSASDGMLSSTALVYVNVTDSNTHAPEFKRRSYSAEVKEDASLGTSVLTVLATDRDTG------------SNAKISYSIATLVPEFSVDETTGV-IKTAGSLDREKVD-TYRFEVTA-TDHGI-PQLKAKSFVYIHIADVNDNDPVFLKPSYEAKVREDIRPGGRVIEVSASDADIGKNAQIIYSFASNGDGQGTFTIDSTQGIIRTLKPLDRETIPEYELTVVATDQGTPP----GQASVKVKVILEDVKDSPPLFEKPLYEVTVPEDTPPRSPVITVKAKSQDLSPETGMMYSIVRGNSPQVFDINPNTGAIQTLMKLDYETQSEYRLTVRATLSPFFTE------TTVMVYLKDINDNTP 852 HSP 3 Score: 130.568 bits (327), Expect = 1.967e-30 Identity = 128/463 (27.65%), Postives = 217/463 (46.87%), Query Frame = 3
Query: 1191 PQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPND----AMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFI--SDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFEL-LTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADI---PPRL 2549
PQF+ E+ +SE+ T++ + D DS +G+ SP+ A F I + T K + +DR+ + DR F + D G +T+ VLD NDN P F Y + E+ ++ V A+D D G N ++KY I SD + F I E SG + ++ LDREK Y + V A D N R ++T TV I ++DVNDC P+ ++ + + ++ E+ P+ ++ + ATDCD G NG+ F ++ ++F + NG + K D E + F+L +T +D G+ L ++T V I ++D NDN+P+ F++++ + + + + + D D G NG++ FS ++++ F +N I +K + +F + A+DKG P +E + I + DI PP+
Sbjct: 18 PQFSRLQEDASVSEDAEVGTVVATVSASDPDSG--SNGMIRYSMSPSQNLMSATYFSIDQITGVITTK------RGLDREFL--DRHFFRVKAEDGG-EPSLEGYMDLTINVLDVNDNGPIFERNIYAADIPEDKSIGDFVLAVRASDADSGSNGEVKYCILNSDGDNSA-FSIGEVSGAVTVMKKLDREKVPTYTLQVQAQDQG-NPPR-SATVTVKITLLDVNDCTPQFSKKVYSATIREDVPVNQLVTTVRATDCDQGSNGEVFFEIVSGNDMNFFSINRINGEVRVKQKLDYEMIG--VFNLLVTAQDKGQPF-LYNQTTVDIALIDVNDNAPQ------FVSSHFQT---------MIPENYAVGQEFYRVQAYDKDHGTNGEITFSF------MQNDLPFSINENTGGISIKEELDREKVPKFTFGIKARDKGVPFKEGTAQITITLLDINDNPPKF 442 HSP 4 Score: 97.0561 bits (240), Expect = 3.857e-20 Identity = 90/350 (25.71%), Postives = 153/350 (43.71%), Query Frame = 3
Query: 369 FSLKPGSSMLTTSKLIDLESLCGSSDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILII---------IKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAIS-DQGIIYLIKHLDYETAPKYEIPVRVTDGEFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKIN 1388
FS+ + ++ T+ +D E + T F+V A Q + + I + DVNDNDP F SY ++E I G+ I++ A D D+ N QI YS F+ + DG+ I +K LD ETI + L ++A +Q P AS+ + ++++D+ D+ P F + +Y V + E+ ++ +KA +D + ++ + + F I+ + G I + LDYET +Y + VR T F + V V + D+ND P N+ + E + I YD D + D + F + E N++ +N
Sbjct: 589 FSVDETTGVIKTAGSLDREKV--------DTYRFEVTATDHGIPQLKAKSFVYIHIADVNDNDPVFLKPSYEAKVREDIRPGGRVIEV-SASDADIGK-NAQIIYS---------FASNGDGQGTFTIDSTQGIIRTLKPLDRETIPEYELTVVATDQGTPPG-QASVKVKVILEDVKDSPPLFEKPLYEVTVPEDTPPRSPVITVKAKSQDLSPETG-MMYSIVRGNSPQVFDINPNTGAIQTLMKLDYETQSEYRLTVRATLSPFFTETTVMVYLKDINDNTPVLEAFHMNINVQEGKVPPEARYKIPAYDPDVS--------------DKLTFKVMEGNAKEWVTLN 903 HSP 5 Score: 84.3445 bits (207), Expect = 2.594e-16 Identity = 89/330 (26.97%), Postives = 146/330 (44.24%), Query Frame = 3
Query: 1527 DNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFIS---DHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLI-----PSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSP 2492
+N PQF+ V E+ + + VSA+D D G N I+Y +S + YF ID+ +G I + LDRE D + V A D E + I+V+DVND P ++ + E++ IG + + A+D D G NG+ + ++ SAFS E+ +G++ DRE + ++L++ +D G S+ V I +LD ND +P+ S Y S T+ + N + +D D G NG+V F + +S F +N +++K+ F + + A+DKG P
Sbjct: 15 NNPPQFSRLQEDASVSEDAEVGTVVATVSASDPDSGSNGMIRYSMSPSQNLMSATYFSIDQITGVITTKRGLDREFLDRHFFRVKAEDGG--EPSLEGYMDLTINVLDVNDNGPIFERNIYAADIPEDKSIGDFVLAVRASDADSGSNGEVKYCILNSDGDNSAFS-IGEV--SGAVTVMKKLDREKVP--TYTLQVQAQDQGNPPR-SATVTVKITLLDVNDCTPQFSK-----KVY----------SATIREDVPVNQLVTTVRATDCDQGSNGEVFFEI----VSGNDMNFFSINRINGEVRVKQKLDYEMIGVFNLLVTAQDKGQP 317 HSP 6 Score: 70.4774 bits (171), Expect = 4.692e-12 Identity = 125/515 (24.27%), Postives = 203/515 (39.42%), Query Frame = 3
Query: 519 RINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFH-FSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQF-----IIVPTINVEIAKTFAISDQGIIYLIKHLDYETAPKYEIPVRVTDG---EFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFEL-LTNGSL 2033
+I I + D+NDN P F Y +I E G S+ +A D D N + YS+ +S + F ++ G ++ + L+ T + + A + S + +T D N + P F + Y + E+ L +L + ATD+D S + +VP +V+ G+I LD E Y V TD + + V + I DVND P F + E+ + + D D I + + F I + T+ I I + +DR+ I ++ D G A+ V + + D D+ P F Y V V E+ P+ P+I V A +D + + Y I Q F I+ N+G I + LD E Q Y++TV AT + TV +++ D+ND P + +V E + K+ A D D+ K F ++ + L T+G L
Sbjct: 427 QITITLLDINDNPPKFSQEEYHTSIAENSRW-GTSVLQVKAIDPDSGPTN--VVYSIVSSSGHDRCFRINPQG--LITLSCTLNYNTKHVYVFSVSASDGMLSSTALVYVNVT----DSNTHAPEFKRRSYSAEVKEDASLGTSVLTVLATDRDTGSNAKISYSIATLVPEFSVD-------ETTGVIKTAGSLDREKVDTYRFEVTATDHGIPQLKAKSFVYIHIADVNDNDPVFLKPSYEAKVREDIRPGGRVIEVSASDADIGKNAQIIYSFASNGDGQGTFTI-----DSTQGI-IRTLKPLDRETI--PEYELTVVATDQG-TPPGQASVKVKVILEDVKDSPPLFEKPLYEVTVPEDTPPRSPVITVKAKSQDLSPETGMMYSIVRGNSPQVFDINPNTGAIQTLMKLDYETQSEYRLTVRATLSPF-----FTETTVMVYLKDINDNTPVLEAFHMNINVQEGKVPPEARYKIPAYDPDVSD--KLTFKVMEGNAKEWVTLNATSGEL 909
BLAST of Protocadherin gamma vs. Ensembl Nematostella
Match: EDO33359 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SSF2]) HSP 1 Score: 174.096 bits (440), Expect = 1.463e-44 Identity = 186/682 (27.27%), Postives = 309/682 (45.31%), Query Frame = 3
Query: 528 IIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLP---ITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAISDQGIIYLIKHLDYETAPKYEIPVRVTDGEFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITEN-----NSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDD---GVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTN-GSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVC-IKILDENDNSPKISVIPDFIAAYNYS-DNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFA 2531
IIV D NDN P F YT + E + G + A DKD S N + YS+ +T F + D I + K LD ETI+ + L+LI + P P S+ + +++ +N++ PRF Y I EN+ L I++++A + D + +FI V + +K F ++ G I L + LDYET +YE + EN + T + + +D+D EG + +T + + T + + L E+DR+ + ++++++ G + TA+ V + VLD NDN P FT Y +++ E ++ VSA D+DD GVN++I+YF+ D + F I++ +G+I Q++D E++ Y V A+D E R T +++V I +IDVND P + + EN IGT + ++ A+D D NGK +F+++ F + N G + T S D E +++ ++L I D G+ SS+ + + +++ NDNSP S Y+ S D NTT + I T SDLD NG+V FS+ + S+ F ++ + +S D + + + A D G PP +S+ M+ +
Sbjct: 204 IIVVDENDNPPEFAQKRYTATVYEN-FTVGTVVLRVTAHDKD-SGPNAMLKYSIHSGNTDDAFVIIADSGDISLD-KPLDKETIENYTLVLIVTDMGIP--PLESIKRMVVNVIVSGVNEHAPRFLNEFYNASIPENLPLGTSIVRVRAVEDDVSVGARFIYVIK-DAASSKVFLVNQTGDITLARELDYETRRRYEFE------------------------------------MYENVTSGTQVLTLFAHDRD-----------EGINGQVFYYIVTSSVKGVFTTNSTTGV-VSLTAELDRESV---YQYNMLVVAQDGGSPPRTASAHVKVEVLDCNDNPPVFTTLYYTLQLSEATSIGTRILRVSANDRDDKDEGVNAEIRYFLKDAIVSKKFSINDTTGQITIKQAVDYEERSSYSFEVFASDGG--EARLTGSSSVRITIIDVNDNRPYFLPTRYYVQLVENVAIGTPVTQVTASDLDSSLNGKVLFSILGGNSDGKFVIDQNTGVVTTNKSLDYEDVTE--YTLVIQATDCGDPPLNSSQPGMLHVSVVNINDNSPVFSQ-----KMYSASIDENTTVGHV-----------ILRVTASDLDSSLNGKVLFSI----LEGNSDGKFVVDQNTGVVTTNKSLDYEDVTEYTLVIQATDCGDPPLNSSQPGMLHVS 804 HSP 2 Score: 137.502 bits (345), Expect = 6.433e-33 Identity = 150/567 (26.46%), Postives = 263/567 (46.38%), Query Frame = 3
Query: 507 IQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGP-GKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQ-FIIVPTINVEIAKTFAISDQGIIYLIKHLDYETAPKYEIPVRVTDGEF---SSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRR--FSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTN-GSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVC-IKILDENDNSP 2180
I+ + +N+IV VN++ P F N Y +I E + P G SI RA + D+S + + Y +++ ++ F V++ G + + +ELD ET + Y + ENV Q+L L A D+D+ Q F + T +V+ T S G++ L LD E+ +Y + V DG +++ V+V ++D ND P FT L +SE T T + + D+D D G+ N +R+ + + + IN Q + ++ + R +S + G R T + +V +T++D NDN P F T Y V++ EN+ P+ V+A+D D +N ++ + I F ID+N+G + +SLD E Y + + ATD + + +H+ V+++ND +P ++ + + S+ EN +G VI ++ A+D D NGK +F+++ F + N G + T S D E +++ ++L I D G+ SS+ + + +++ NDNSP
Sbjct: 304 IKRMVVNVIVSGVNEHAPRFLNEFYNASIPENL--PLGTSIVRVRAVEDDVS-VGARFIYVIKDAASSKVFLVNQTGD--ITLARELDYET----------------------------------------RRRYEFEMYENVTSGTQVLTLFAHDRDEGINGQVFYYIVTSSVKGVFT-TNSTTGVVSLTAELDRESVYQYNMLVVAQDGGSPPRTASAHVKVEVLDCNDNPPVFTTLYYTLQLSEATSIGTRILRVSANDRDDK--DEGV-------NAEIRYFLKDAIVSKKFSINDTTGQITIKQAVDYEERSSYSFEVFASDGGEARLTGSSSVRITIIDVNDNRPYFLPTRYYVQLVENVAIGTPVTQVTASDLDSSLNGKVLFSILGGNSDGKFVIDQNTGVVTTNKSLDYEDVTEYTLVIQATDCGDPPLNSSQPGMLHVSVVNINDNSPVFSQKMYSASIDENTTVGHVILRVTASDLDSSLNGKVLFSILEGNSDGKFVVDQNTGVVTTNKSLDYEDVTE--YTLVIQATDCGDPPLNSSQPGMLHVSVVNINDNSP 813 HSP 3 Score: 124.405 bits (311), Expect = 8.121e-29 Identity = 161/676 (23.82%), Postives = 278/676 (41.12%), Query Frame = 3
Query: 558 PFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAISDQ-GIIYLIKHLDYETAPKYEIPVRVTDGEFSS-----NGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKI-----NIYLNQEIDRDQINGDRRFSVIICNDMGINN-RXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFEL-LTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDD---GPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADI 2537
P F Y+ I E + G ++ A D+D +L N +++YS+ ST + V + ++ KE D ET + + A ++ P R +A I + I D NDN P F Y + EN L + ++KA DKD TS +I N +F I + G I K D+E +Y + + V+D + V ++++D ND P+F + EN T++ + +D+DS PN +++ I N++ I +I L++ +D++ I + V+I DMGI V + V N+++P+F Y + ENL ++ V A + D V ++ Y I D + F +++ +G I + LD E + Y+ F +YEN GT + L A D D G NG+ + ++ S+ F T G + DRES+ Q +++ + +D G +S V +++LD NDN P F Y ++ +S+ S + I + +D DD G N ++ + +K +S K F +N T I +K++ + + + + A D G S + + D+
Sbjct: 1 PIFNQTLYSAIIPED-FTVGGTLLTVLARDQDAAL-NARVTYSIVSFSTESDYFVIDNITGVVRSSKEFDYETQRMYSFSVRAEDRGSPIR-SAIATIHVQITDTNDNRPIFQPMEYETRVSENTPLGTIVARVKAVDKDSTSNAD-LIYSIQNGNNNGSFTIDNSTGEIMTRKEFDFEKTERYNLTISVSDTGVPALSSLNFANVVIIVVDENDNPPEFAQKRYTATVYENFTVGTVVLRVTAHDKDSG------------PNAMLKYSIHSGNTDDAFVIIADSGDISLDKPLDKETI--ENYTLVLIVTDMGIPPLESIKRMVVNVIVSGVNEHAPRFLNEFYNASIPENLPLGTSIVRVRAVEDDVSVGARFIYVIKDAASSKVFLVNQ-TGDITLARELDYETRRRYE-----------------------------------------FEMYENVTSGTQVLTLFAHDRDEGINGQVFYYIVTSSVKGVFTTNSTTGVVSLTAELDRESVYQ--YNMLVVAQDGGSPPRTASA-HVKVEVLDCNDNPPV------FTTLY---------YTLQLSEATSIGTRILRVSANDRDDKDEGVNAEIRYFLKDAIVSKK----FSINDTTGQITIKQAVDYEERSSYSFEVFASDGGEARLTGSSSVRITIIDV 594 HSP 4 Score: 73.559 bits (179), Expect = 3.449e-13 Identity = 74/284 (26.06%), Postives = 131/284 (46.13%), Query Frame = 3
Query: 369 FSLKPGSSMLTTSKLIDLESLCGSSDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYP----SRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAISDQGIIYLIKHLDYETAPKYEIPVRVTD-GE----FSSNGRVEVVIIDVNDCAP 1193
FS+ + +T + +D E S F+V A + + + I + DVNDN P+F Y + E + G + A D D SL N ++ +S+ ++ F + ++ ++ K LD E + + L++ A + P S+P L +++V +INDN P FSQ +Y I EN + H IL++ A+D D + + + K + G++ K LDYE +Y + ++ TD G+ S G + V ++++ND +P
Sbjct: 544 FSINDTTGQITIKQAVDYEERSSYS--------FEVFASDGGEARLTGSSSVRITIIDVNDNRPYFLPTRYYVQLVENV-AIGTPVTQVTASDLDSSL-NGKVLFSILGGNSDGKFVIDQN-TGVVTTNKSLDYEDVTEYTLVIQATDCGDPPLNSSQP-GMLHVSVV--NINDNSPVFSQKMYSASIDENTTVGHVILRVTASDLDSSLNGKVLFSILEGNSDGKFVVDQNTGVVTTNKSLDYEDVTEYTLVIQATDCGDPPLNSSQPGMLHVSVVNINDNSP 813
BLAST of Protocadherin gamma vs. Ensembl Nematostella
Match: EDO41005 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S5N5]) HSP 1 Score: 164.851 bits (416), Expect = 5.218e-41 Identity = 191/691 (27.64%), Postives = 301/691 (43.56%), Query Frame = 3
Query: 468 FQVVAL-VMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKT--SRLQFIIVPTINVEIAKTFAISD-QGIIYLIKHLDYETAPKYEIPVRVTDGEFSS---NGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKIN-----IYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFT--LIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPR 2498
F V+A + ++ + + + + DVNDNDP F YT N+ E PG ++ RA D DL+ N +SYS+ +T F V I ++ K L+ E I ++ L + + + R + +L I V+D +NDN P V +LEN+ H ++++ TD D+ R+++ + + F + GII + LD E+ P Y + V + S N V V+++D ND P FT+ + E T + L + D D GI N +R+ + E +IN + L +DR+ N + + D GI + T+ + V D NDN P FT Y V E + V A DKD+ +N+ I Y I F I+ SG I + LDRE D Y +TV+A+D E S+ V IHV DVND P I + EN P G+++ L A+D D G N + F+ +P F + NG ++ + S DRE +Q +F D G+ SS + I I DENDN+P + S+ +S+ + I S+ D+ G++ F + S F ++ I ++ + +RF +T+ A+D+G P R
Sbjct: 831 FSVIAQDSIPNRPLVNVTMVTVNLLDVNDNDPVFDRDVYTANVSEDA-SPGLTVLKIRAVDNDLAS-NANVSYSIVSGNTGAAFHVDNVTGEIKLVSK-LEREKITSYTLTVGSADGGAVPRRSTALVIIYVMD-VNDNSPVCLHDTQTVRLLENLPAGHFVVKVVTTDPDEVHNGRVEYNLT-------SDAFRVDPFTGIITTTRALDRESIPAYNLMVTARNSNSSDMEVNCSVHVIVMDTNDHTPSFTMARYYISTPETTPVGSTLFRVRAVDGDD-----GI-------NAEVRYTLM--GEESLFRINYTTGIVTLVSSLDRE--NKAQYQLEVEARDRGIPESNANSTTILIRVGDVNDNRPTFTHAHYDGNVLEG-QVGAVAAIVVALDKDEEINADIVYSIIGGNTDNSFAINNKSGSIYTLLHLDRETTDRYILTVLASDRG--EPAMNSSTNVTIHVNDVNDNKPNITNNPGVVVTRENTPPGSLVYILSASDLDEGSNARVAFSGYAVPDG---KFSIKPNGEIMVRDSLDRE--AQNRFVFYAMATDSGQPPFNSSMVSFDILIADENDNNPVFDPV---------------HYSVNISENGPSEEVIVQVNASERDE---GKLLFKIS----SGDPGGYFTIHNVTGVISTRKPLDREMVSRFDLTITAEDEGRPSR 1464 HSP 2 Score: 160.614 bits (405), Expect = 1.114e-39 Identity = 185/682 (27.13%), Postives = 308/682 (45.16%), Query Frame = 3
Query: 522 INIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSI-DLPRAFDKDLSLINNQISYSLQET--STYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLP-ITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAISD-QGIIYLIKHLDYETAPKYEIPVRVTDGEF---SSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIIC------NDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLT-NGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYP---ISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKV 2513
+N+ V++VNDN P F +YT I E + +I + A D D N + LQ T ++ F++ KD +L + LD E I + +IA + P+RP ++ +T+ + D+NDN+P F + +Y + E+ +L+++A D D S + ++ F + + G I L+ L+ E Y + V DG S V + ++DVND +P + + + + EN + +V D D + + +E S DA R D T+ + DR+ I +++++ +DM +N +V + V+D ND++P FT+ Y + E L V A D DDG+N++++Y + + F+I+ +G + + SLDRE + YQ+ V A D I E ST T+ I V DVND P + +V E Q ++A D D N ++++I + F + +GS+ T + DRE+ ++ L + D GE ++S T V I + D NDN P I+ P + + NT S+ ++ + SDLD+G N +VAFS P S+K N I ++ S + NRF+ +A D G PP +S V
Sbjct: 739 VNVTVDNVNDNYPSFGQDNYTFWISEGDFAVDHAIVGVVSAHDLDADSSNCPLCGKLQYTLGNSTGPFAIDKD-TGVLRAVGSLDREGIKNYTFSVIAQDS-IPNRPLVNVTMVTVNLLDVNDNDPVFDRDVYTANVSEDASPGLTVLKIRAVDNDLASNAN-VSYSIVSGNTGAAFHVDNVTGEIKLVSKLEREKITSYTLTVGSADGGAVPRRSTALVIIYVMDVNDNSPVCLHDTQTVRLLENLPAGHFVVKVVTTDPDEVH-NGRVEYNLTS--DAFRVDPFTGIITTTRAL--------DRESIPA---YNLMVTARNSNSSDMEVN------CSVHVIVMDTNDHTPSFTMARYYISTPETTPVGSTLFRVRAVDGDDGINAEVRYTL--MGEESLFRINYTTGIVTLVSSLDRENKAQYQLEVEARDRGIPESNANST-TILIRVGDVNDNRPTFTHAHYDGNVLEGQVGAVAA-IVVALDKDEEINADIVYSIIGGNTDNSFAINNKSGSIYTLLHLDRETTD--RYILTVLASDRGEP-AMNSSTNVTIHVNDVNDNKPNITNNPGVVV----TRENTPPGSL-----------VYILSASDLDEGSNARVAFSGYAVPDGKFSIKPN---------GEIMVRDSLDREAQNRFVFYAMATDSGQPPFNSSMV 1366 HSP 3 Score: 156.377 bits (394), Expect = 2.563e-38 Identity = 202/792 (25.51%), Postives = 334/792 (42.17%), Query Frame = 3
Query: 249 IKENQPPGLVVGNLLDNLPYKQYFISPGYHFVLQKESE-EFFSLKPGSSMLTTSKLIDLESLCGSSDCYNGTKEFQVVALVMRDKQFIQELRINIIVE-----DVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYP-----SRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAISD-QGIIYLIKHLDYETAPK-YEIPVRVTDGEFSSNGR--------VEVVIIDVNDCAPQFTLNPENLVISEN--TLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKIN-----IYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRET-SKVIMVQFADI 2537
I EN+PPG V + N Y + E ++F + + +TTS+ +D E++ T +V A D + +R++++ D+NDN P F SY ++ E PG + + A D+D L N I Y + E + F + +L + LD E + H L + A ++ S ++ +TI + D NDN P + Y + I EN + ++ L TD+D + V F + + GI+ L K LD+E P + + + V D +GR V V + +VND P F + ISE + ++G + +D D+ + + C + T NS I+ + +DR+ I + FSVI D N VT+ +LD NDN P F Y V E+ P ++ + A D D N+ + Y I F +D +G+I + L+REK Y +TV + D + STA V I+V+DVND +P T + EN P G + K++ TD D NG+ + L AF + T G + T + DRES+ ++L +T R+ + +V + ++D ND++P F A Y I+ +T S +F D DDG N +V +++ + LF +N T + L S + + ++ + + A+D+G P S I+++ D+
Sbjct: 438 IYENEPPGTFVIQVSANDSDIGSNAMVSYAVLSDAEGHYQYFKINAKNGTITTSRRLDRENIT--------TFRLRVTA---SDGAPLSTIRVSVVDVVVTVLDINDNSPEFVRPSYNFSVIETAL-PGAILGIISAVDRDKDL-NGNIVYIITEGNVEGSFIIGARSG-LLQLNHTLDREVVSKHSLRVTASDRGGEFMADGSSLNTTINVTINVLDSNDNIPVCDKVYYTISIPENTSVGQSLIHLNCTDQDSGENAHLLYHM---VSGHSKFVVDNVTGIMSLNKLLDFEEKPTVFTVAIEVID-----HGRPPLSLVVFVNVTVDNVNDNYPSFGQDNYTFWISEGDFAVDHAIVGVVSAHDLDADSSNCPL-CG--------KLQYTLGNSTGPFAIDKDTGVLRAVGSLDREGIK-NYTFSVI-AQDSIPNRPLVNVTMVTVNLLDVNDNDPVFDRDVYTANVSEDASPGLTVLKIRAVDNDLASNANVSYSIVSGNTGAAFHVDNVTGEIKLVSKLEREKITSYTLTVGSADGG--AVPRRSTALVIIYVMDVNDNSPVCLHDTQTVRLLENLPAGHFVVKVVTTDPDEVHNGRVEYNLTSDAFR--VDPFT-GIITTTRALDRESIP--AYNLMVTARN-SNSSDMEVNCSVHVIVMDTNDHTPS------FTMARYY---------ISTPETTPVGSTLFRVRAVDGDDGINAEVRYTL------MGEESLFRINYTTGIVTLVSSLDRENKAQYQLEVEARDRGIPESNANSTTILIRVGDV 1167 HSP 4 Score: 131.339 bits (329), Expect = 9.960e-31 Identity = 169/646 (26.16%), Postives = 274/646 (42.41%), Query Frame = 3
Query: 615 GKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWN--QNYPSRPTASLP----ITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAISD-QGIIYLIKHLDYETAPKYEIPVRVTDGEFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKIN---IYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKY-FISD-HTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLL-TKVSFDRESLSQVKFSLRITVRDIGEEI-----HLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQ-QSDGNRFLVTLIAKDKGSPP 2495
G S+ A D D IN +++Y++ + F + + K ++ + +ELD E + ++L + A N N P L +T+ + D +D RF+ Y I EN + ++Q+ A D DK+ + F I++ G I L LD ET +Y + + + + V + + DVND P FTL N ++EN T + I V +D +D G+ N + ++I E + I +N +DR++ D +I + + F + T+T+ + D NDNSP F+ Y + EN P +I VSA D D G N+ + Y +SD H QYFKI+ +G I + LDRE +++ V A+D A S V + V+D+ND +P FSV E G ++G + A D D NG ++ + F + LL + DRE +S K SLR+T D G E L++ V I +LD NDN P + +I++ + S + +D D G N + + M + + F ++ + L + + F V + D G PP
Sbjct: 125 GLSVLTMSATDMDAEEINQRVNYAIVSGNEDGIFDIDFN-KGVIRLARELDFEQMTQYKLNISASNPLTNDTVIPKNGLSNWTMVTVNVLDADDLPVRFNNYSYSASIPENAAMGSVVMQVHAKDLDKSINAPVTYAIDKETNPLRMFNIANITGEITLNGSLDRETIAEYRLRILAYCTIYQDHTEVLITVTDVNDNIPLFTLPSYNTTVNENAAIGTYV--IQVQAED---IDQGV-------NASFIYEIAYAGHEFVIGEHSGIIIVNGTLDREK--KDLYSITVIARETETSAGFHSNVTITVMLRDENDNSPIFSRALYSSPIYENEPPGTFVIQVSANDSDIGSNAMVSYAVLSDAEGHYQYFKINAKNGTITTSRRLDRENITTFRLRVTASDGAPLSTIRVSVVDVVVTVLDINDNSPEFVRPSYNFSVIETALPGAILGIISAVDRDKDLNGNIVYIITEGNVEGSFIIGARSGLLQLNHTLDREVVS--KHSLRVTASDRGGEFMADGSSLNTTINVTINVLDSNDNIPVCDKVY---------------YTISIPENTSVGQSLIHLNCTDQDSGENAHLLYHM------VSGHSKFVVDNVTGIMSLNKLLDFEEKPTVFTVAIEVIDHGRPP 732 HSP 5 Score: 117.857 bits (294), Expect = 1.429e-26 Identity = 190/730 (26.03%), Postives = 306/730 (41.92%), Query Frame = 3
Query: 495 DKQFIQELRINII---------------VEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIA-KTFAI-SDQGIIYLIKHLDYETAPKYEIPVRVTDGEFSSNGR-----VEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKIN-----IYLNQEIDRD-------QINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKY-FISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRH-----TSTATVHIHVIDVNDCAPRINESLNTFSVYENQPI--GTVIGKLIATDCDIGQN-----GKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCS--ITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADI 2537
D++ I E R+ I+ V DVNDN P F SY + E G + +A D D +N Y E + H V + I+I+ LD E D + + +IA + +++ IT+++ D NDN P FS+++Y PI EN ++Q+ A D D S + E + F I + G I + LD E + + V +DG S R V V ++D+ND +P+F N + E L +LG I D+D N + + ITE N E + I + LN +DR+ ++ R + + +N T VT+ VLD+NDN P Y + + EN LI ++ TD+D G N+ + Y +S H+ F +D + GI SL++ D+ + V T +AI I H + V++ V +VND P + TF + E ++G + A D D + GK +TL S + T G L S DRE + FS + +D L + T V + +LD NDN P D Y+ N + D S +TV K + D D N V++S+ +S + F+++ IKL ++ + +T+ + D G+ PR ++ ++++ D+
Sbjct: 287 DRETIAEYRLRILAYCTIYQDHTEVLITVTDVNDNIPLFTLPSYNTTVNENA-AIGTYVIQVQAEDIDQG-VNASFIY---EIAYAGHEFVIGEHSGIIIVNGTLDREKKDLYSITVIARETETSAGFHSNVTITVMLRDENDNSPIFSRALYSSPIYENEPPGTFVIQVSANDSDIGSNAMVSYAVLSDAEGHYQYFKINAKNGTITTSRRLDRENITTFRLRVTASDGAPLSTIRVSVVDVVVTVLDINDNSPEFVRPSYNFSVIETALPGAILGIISAVDRDKDL------------NGNIVYIITEGNVEGSFIIGARSGLLQLNHTLDREVVSKHSLRVTASDRGGEFMADGSSLN----TTINVTINVLDSNDNIPVCDKVYYTISIPENTSVGQSLIHLNCTDQDSGENAHLLYHMVSGHSK---FVVD----NVTGIMSLNK-LLDFEEKPTVFT-VAIEVIDHGRPPLSLVVFVNVTVDNVNDNYPSFGQDNYTFWISEGDFAVDHAIVGVVSAHDLDADSSNCPLCGKLQYTLGNSTGPFAIDKDT-GVLRAVGSLDREGIKNYTFS--VIAQDSIPNRPLVNVTMVTVNLLDVNDNDPVFD--RDV-----YTANVSEDASPGLTVLKIRAV----------DNDLASNANVSYSI----VSGNTGAAFHVDNVTGEIKLVSKLEREKITSYTLTVGSADGGAVPRRSTALVIIYVMDV 962 HSP 6 Score: 99.3673 bits (246), Expect = 6.811e-21 Identity = 157/624 (25.16%), Postives = 272/624 (43.59%), Query Frame = 3
Query: 453 NGT-----KEFQVVALVMRDKQ----FIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETST--YFHFSV-SKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVID-----DINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFI-IVPTINVEIAKTFAISDQ-GIIYLIKHLDYETAPKYEIPVRVTD--GEFSSNG-------RVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSA-------YVDSG-----IECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKE-NLKPQYPLID-VSATDKD-DGVN----SQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFEL-LTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSP 2180
NGT K+ + ++ R+ + F + I +++ D NDN P F A Y+ I E PG + A D D+ N +SY++ + Y +F + +K+G + + LD E I T RL + A + P +++ +++V DINDN P F + Y ++E + + A D+DK + I+ NVE +F I + G++ L LD E K+ + V +D GEF ++G V + ++D ND P + I ENT L ++ DQDS ++ SG ++ G + D E + T I + ID +G S+++ ++ ++N NDN P F +Y + E + + ++ VSA D D D N +++Y + + T F ID+++G + + SLDRE Y +V+A D +I + V ++++DVND P + + T +V E+ G + K+ A D D+ N ++++ F + G + +RE ++ ++L + D G + S V I ++D NDNSP
Sbjct: 383 NGTLDREKKDLYSITVIARETETSAGFHSNVTITVMLRDENDNSPIFSRALYSSPIYE-NEPPGTFVIQVSANDSDIGS-NAMVSYAVLSDAEGHYQYFKINAKNGT--ITTSRRLDRENITTFRLRVTASD----GAPLSTIRVSVVDVVVTVLDINDNSPEFVRPSYNFSVIETALPGAILGIISAVDRDKDLNGNIVYIITEGNVE--GSFIIGARSGLLQLNHTLDREVVSKHSLRVTASDRGGEFMADGSSLNTTINVTINVLDSNDNIPVCDKVYYTISIPENTSVGQSLIHLNCTDQDSGENAHLLYHMVSGHSKFVVDNVTGIMSLNKLLDFEEKPTVFTVAIEV-----ID----HGRPPLSLVVFVNVTVDN--------------VNDNYPSFGQDNYTFWISEGDFAVDHAIVGVVSAHDLDADSSNCPLCGKLQYTLGNSTGP--FAIDKDTGVLRAVGSLDREGIKNYTFSVIAQD-SIPNRPLVNVTMVTVNLLDVNDNDPVFDRDVYTANVSEDASPGLTVLKIRAVDNDLASNANVSYSIVSGNTGAAFHVDNVTGEIKLVSKLEREKITS--YTLTVGSAD-GGAVPRRSTALVIIYVMDVNDNSP 967 HSP 7 Score: 97.4413 bits (241), Expect = 2.897e-20 Identity = 131/475 (27.58%), Postives = 210/475 (44.21%), Query Frame = 3
Query: 522 INIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTS--RLQF--IIVPTINVEIAKTFAISDQGIIYLIKHLDYETAPKYEIPVRVTDGE----FSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRF-DITENNSERTKKINIYLNQEIDRDQINGDRRFSVII-CNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQ---QYFKIDENS---GKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYE 1898
I I V DVNDN P F +A Y N+ E G + A DKD IN I YS+ +T F+++ I ++ LD ET D + L ++A ++ P+ +S +TI ++D+NDN+P + + V EN + L A+D D+ S R+ F VP F+I G I + LD E ++ TD SS +++I D ND P F ++ ISEN ++ ++ + ++D + + G P ++T S R + +DR+ ++ RF + I D G +R + + ND +P + +V V EN + ++A DKDD N++I Y + + Q S G II LDRE+QD Y +TV A+D H +T + + + DVND +P N++ S++E
Sbjct: 1160 ILIRVGDVNDNRPTFTHAHYDGNVLE--GQVGAVAAIVVALDKDEE-INADIVYSIIGGNTDNSFAINNKSGSIYTLL-HLDRETTDRYILTVLASDRGEPAM-NSSTNVTIHVNDVNDNKPNITNNPGVVVTRENTPPGSLVYILSASDLDEGSNARVAFSGYAVPD------GKFSIKPNGEIMVRDSLDREAQNRFVFYAMATDSGQPPFNSSMVSFDILIADENDNNPVFDPVHYSVNISENGPSEEVIVQVNASERDEGKL--LFKISSGDPGGYFTIHNVTGVISTR---------KPLDREMVS---RFDLTITAEDEGRPSRMALGYVTIFVNDE-NDFAPVIEQCEQLVSVSENAHIGSAVASINAVDKDDPSNTKITYSVGNSAFNITTQRLPFSSGSRYRGIIITAGLLDRERQDNYNITVTASDG-----NHIATCNIIVRITDVNDNSPVFNQTTMNISLHE 1603 HSP 8 Score: 64.6994 bits (156), Expect = 2.577e-10 Identity = 90/350 (25.71%), Postives = 141/350 (40.29%), Query Frame = 3
Query: 252 KENQPPGLVVGNL----LDNLPYKQYFISPGYHFVLQKESEEFFSLKPGSSMLTTSKLIDLESLCGSSDCYNGTKEFQVVALVMRDKQ--FIQEL-RINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLP-RAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKT-FAISDQ-----------GIIYLIKHLDYETAPKYEIPVRVTDGEFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTL 1241
+EN PPG +V L LD + S GY K FS+KP ++ L D E+ F A+ Q F + +I++ D NDN+P F Y+ NI E GP + + + A ++D ++ + + +F++ + ++ K LD E + L + A ++ PSR +TI ++D ND P Q V + EN + + + A DKD S + I + + F I+ Q GII LD E Y I V +DG + + V I DVND +P F N+ + E +L
Sbjct: 1288 RENTPPGSLVYILSASDLDEGSNARVAFS-GYAVPDGK-----FSIKPNGEIMVRDSL-DREA----------QNRFVFYAMATDSGQPPFNSSMVSFDILIADENDNNPVFDPVHYSVNISE--NGPSEEVIVQVNASERD----EGKLLFKISSGDPGGYFTI-HNVTGVISTRKPLDREMVSRFDLTITAEDEGRPSRMALGY-VTIFVNDENDFAPVIEQCEQLVSVSENAHIGSAVASINAVDKDDPSNTK------ITYSVGNSAFNITTQRLPFSSGSRYRGIIITAGLLDRERQDNYNITVTASDGNHIATCNIIVRITDVNDNSPVFNQTTMNISLHEVSL 1606
BLAST of Protocadherin gamma vs. Ensembl Medaka
Match: pcdh1a (protocadherin-1 [Source:NCBI gene;Acc:101157079]) HSP 1 Score: 224.557 bits (571), Expect = 9.355e-60 Identity = 230/794 (28.97%), Postives = 361/794 (45.47%), Query Frame = 3
Query: 231 GTIKYWIKENQPPGLVVGNLLDN--LP-----YKQYFISPGYHFVLQKESEEFFSLKPGSSMLTTSKLIDLESLCGSSDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKE-IIYGPGKSIDLPRAFDKDLSLINNQISYSLQ---ETSTYFHFSVSKD--GK-PILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKD--KTSRLQFIIVPTINVEIAKTFAI-SDQGIIYLIKHLDYETAPKYEIPVRVTDG---EFSSNGRVEVVIIDVNDCAPQFTLNPENLV--------ISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSV-IICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKY-FISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMV 2522
G+I Y ++E QPP ++G+L + LP YK +P Y V K + F + P + L D SL CY EF+V + + + I V+D+NDN P F + T ++ E I G SI P A D+D S N Y+L + +T F V+ D GK P LI++ LD E D++ L + A + P R + +L + +V+ D NDN P+F Y + EN + H +LQ+KA D D +++ + ++ + K I GIIY+ LD E V D SS V + + D ND AP + LV ISE+ T + + V D+D ++ + C +++ S+ +K + +D +++ + + V I+ D G N ++T ++ + V D NDNSP F+ T + V E +P ++DV+ATD D G N+++ Y + D + F+ID N+G++ LDRE ++ Y+ V A D H TATV I V+D ND P+ S +FSV EN P + +G + D D G+N ++ P + T G++L+ +SFDRE S F L+ G E SS V I +LDENDN P ++ P + S + D + V + E DLD GPN + FS+ QLF ++ + I L + + G + + D+G PPR + ++ +
Sbjct: 22 GSILYRVQEEQPPNTLIGSLAADHGLPDSGHLYKLEVGAP-YLRVDGKTGDIFTTEIP----IDRETLRDCRSLVKGKPCY---LEFEVSVTDLLQNPSPRLIEGRIEVQDINDNTPQFPLSVLTISVPENTIMGALFSI--PLATDRD-SERNGVADYALTAGPDAATLFGLQVADDRGGKLPQLIVLGNLDRELKDSYDLTIKAVDGGNPQRYSQAL-LRVVVTDANDNSPKFEHPSYEAEVSENSPVGHSVLQVKADDSDMGPNGEIEYSLHQAVD-PVPKLLRIDRTTGIIYVKGPLDREEINSLSFYVVARDKGPQPKSSKTFVTIEVTDQNDNAPAVEIRGIGLVTHSEGIANISEDMPVGTAVALVQVSDKDEGE-NAVVTCVVAGDVPFQLRPASDSTSDNKRKYFLQTTTPLDYERV---KEYRVEIVAVDSG-NPALSSTNSLKVQVTDVNDNSPVFSPTIFEVDFAEENQPGETILDVTATDADSGTNAELFYNIVGDSYIKGLFEIDPNTGEVKARTPLDREHKERYEFRVTAADKG--SPVHKGTATVVIKVLDCNDNDPKFMLSGYSFSVLENMPPLSPVGMVTVLDMDKGENAHVHLSVEPDGGKFVVQNGT-GTILSSISFDREKESSYTFRLKAV---DGGEPPRSSYVGVTINVLDENDNDPVVTK-PSNSSFRQLSPVASPDSHVDVVEAE------------DLDSGPNADLVFSIA----GGNPYQLFRISPSSGEITLAKEMTRKHGGLHRLVVRVSDRGKPPRHATALVHI 774
BLAST of Protocadherin gamma vs. Ensembl Medaka
Match: pcdh1a (protocadherin-1 [Source:NCBI gene;Acc:101157079]) HSP 1 Score: 225.328 bits (573), Expect = 1.453e-59 Identity = 228/795 (28.68%), Postives = 361/795 (45.41%), Query Frame = 3
Query: 231 GTIKYWIKENQPPGLVVGNLLDN--LP-----YKQYFISPGYHFVLQKESEEFFSLKPGSSMLTTSKLIDLESLCGSSDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKE--IIYGPGKSIDLPRAFDKDLSLINNQISYSL---QETSTYFHFSVSKD--GK-PILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKD--KTSRLQFIIVPTINVEIAKTFAI-SDQGIIYLIKHLDYETAPKYEIPVRVTDG---EFSSNGRVEVVIIDVNDCAPQFTLNPENLV--------ISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSV-IICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKY-FISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMV 2522
G+I Y ++E QPP ++G+L + LP YK +P Y V K + F + P + L D SL CY EF+V + + + I V+D+NDN P F + T ++ E I+ G +P A D+D S N Y+L + +T F V+ D GK P LI++ LD E D++ L + A + P R + +L + +V+ D NDN P+F Y + EN + H +LQ+KA D D +++ + ++ + K I GIIY+ LD E V D SS V + + D ND AP + LV ISE+ T + + V D+D ++ + C +++ S+ +K + +D +++ + + V I+ D G N ++T ++ + V D NDNSP F+ T + V E +P ++DV+ATD D G N+++ Y + D + F+ID N+G++ LDRE ++ Y+ V A D H TATV I V+D ND P+ S +FSV EN P + +G + D D G+N ++ P + T G++L+ +SFDRE S F L+ G E SS V I +LDENDN P ++ P + S + D + V + E DLD GPN + FS+ QLF ++ + I L + + G + + D+G PPR + ++ +
Sbjct: 99 GSILYRVQEEQPPNTLIGSLAADHGLPDSGHLYKLEVGAP-YLRVDGKTGDIFTTEIP----IDRETLRDCRSLVKGKPCY---LEFEVSVTDLLQNPSPRLIEGRIEVQDINDNTPQFPLSVLTISVPENTIM---GALFSIPLATDRD-SERNGVADYALTAGPDAATLFGLQVADDRGGKLPQLIVLGNLDRELKDSYDLTIKAVDGGNPQRYSQAL-LRVVVTDANDNSPKFEHPSYEAEVSENSPVGHSVLQVKADDSDMGPNGEIEYSLHQAVD-PVPKLLRIDRTTGIIYVKGPLDREEINSLSFYVVARDKGPQPKSSKTFVTIEVTDQNDNAPAVEIRGIGLVTHSEGIANISEDMPVGTAVALVQVSDKDEGE-NAVVTCVVAGDVPFQLRPASDSTSDNKRKYFLQTTTPLDYERV---KEYRVEIVAVDSG-NPALSSTNSLKVQVTDVNDNSPVFSPTIFEVDFAEENQPGETILDVTATDADSGTNAELFYNIVGDSYIKGLFEIDPNTGEVKARTPLDREHKERYEFRVTAADKG--SPVHKGTATVVIKVLDCNDNDPKFMLSGYSFSVLENMPPLSPVGMVTVLDMDKGENAHVHLSVEPDGGKFVVQNGT-GTILSSISFDREKESSYTFRLKAV---DGGEPPRSSYVGVTINVLDENDNDPVVTK-PSNSSFRQLSPVASPDSHVDVVEAE------------DLDSGPNADLVFSIA----GGNPYQLFRISPSSGEITLAKEMTRKHGGLHRLVVRVSDRGKPPRHATALVHI 851
BLAST of Protocadherin gamma vs. Ensembl Medaka
Match: pcdh1b (protocadherin-1 [Source:NCBI gene;Acc:101174755]) HSP 1 Score: 197.208 bits (500), Expect = 5.940e-51 Identity = 218/787 (27.70%), Postives = 354/787 (44.98%), Query Frame = 3
Query: 243 YWIKENQPPGLVVGNLLDNLPYKQYFISPGYHFVLQKESEEFFSLKPGSSMLTTSKLIDLESLCGSSDCYNGTK------EFQVVALVMRDKQFIQELRINIIVE--DVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQ---ETSTYFHFSVSKDGK---PILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAISDQ--GIIYLIKHLDYETAPKYEIPVRVTD---GEFSSNGRVEVVIIDVNDCAPQFTLNPENLVI--------SENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMV 2522
Y + E QPP ++G+L +L G+ + L+ S + TT ID E+L SDC N + EF+V M + I I+E D+NDN P F + T +I E + G +P A D+D S N Y+L + + F V++D P +I+I LD E D++ L + + P R +++L + I + D NDN P+F ++ Y + EN H +LQ++A D D + + + D+ GIIY+ +D E + V D SS +V + I D ND AP + LVI SE+ T + + V D+D ++ + C +E+ ++R +K + +D ++I D R ++ D G N ++T ++ + V D NDN+P F+ V E+ +P +IDV ATD D GVN+++ Y I + + F+I+ N+G+I LDRE + Y+ V A D + T TA V I+V D ND P+ S +FSV EN P +G + +D D G+N + + P + T G++L+ +SFDRE S ++ R+ D G+ SS V I +LDENDN+P ++ P + + ++ D + V K E D+D G N ++ +++ + LF ++ IKL + + + + DKG PPR T+ ++ V
Sbjct: 43 YKLSEEQPPNTLIGSLAADL----GLPDSGHLYKLEVGSPYLRVDSKTGEIYTTEIPIDRETL---SDCRNLFEDDKCFLEFEVSITDMVKGIGLGPRLIEGIIEVLDINDNTPQFSSPILTLSIPENTHT-GTLFSIPVAVDRD-SGSNGVAEYALSAGPDANQLFGLQVAEDVDEKIPQVIVIGNLDREKKDSYDLNIRVVDGGKPPRASSAL-LRITVTDQNDNAPKFEKNQYEAELPENSPPGHSVLQVRANDADTGANGDIDYSLHQASDTVQRLLRIDRSTGIIYVKGLVDREEDNLLKFYVVARDRGPNSKSSKAQVTISIKDQNDNAPAIEIRGIGLVIHQNFVANISEDMPIGTPVALVQVSDRDEGE-NAVVTCVVAGDVPFQLRPASESANDRKRKYFLQTTTLLDYERIK-DYRIEIVAV-DSG-NPALSSTNSLKVQVTDINDNTPSFSPALLEVNFAEDNQPGDKVIDVVATDADSGVNAELVYSIIESSAASLFEINSNTGEIRVRNQLDREDVERYEFGVAAADKGVPS--KTGTAIVVINVEDRNDNDPKFMLSGYSFSVNENMPPLNPVGVVTVSDADKGENSQVTLFVEPDNGKFIIQNGT-GTILSSISFDREKES--TYTFRLKAVDAGDPPR-SSYVGVTINVLDENDNAPYVTK-PANSSYTHLKPSSPPDTPVEVVKAE------------DIDAGVNAELYYTI----TGGNPHGLFQISHNSGEIKLAQGFTGKHKGLHRLVVRVSDKGKPPRHTTALVHV 792
BLAST of Protocadherin gamma vs. Ensembl Medaka
Match: pcdh1b (protocadherin-1 [Source:NCBI gene;Acc:101174755]) HSP 1 Score: 197.593 bits (501), Expect = 8.140e-51 Identity = 218/787 (27.70%), Postives = 354/787 (44.98%), Query Frame = 3
Query: 243 YWIKENQPPGLVVGNLLDNLPYKQYFISPGYHFVLQKESEEFFSLKPGSSMLTTSKLIDLESLCGSSDCYNGTK------EFQVVALVMRDKQFIQELRINIIVE--DVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQ---ETSTYFHFSVSKDGK---PILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAISDQ--GIIYLIKHLDYETAPKYEIPVRVTD---GEFSSNGRVEVVIIDVNDCAPQFTLNPENLVI--------SENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMV 2522
Y + E QPP ++G+L +L G+ + L+ S + TT ID E+L SDC N + EF+V M + I I+E D+NDN P F + T +I E + G +P A D+D S N Y+L + + F V++D P +I+I LD E D++ L + + P R +++L + I + D NDN P+F ++ Y + EN H +LQ++A D D + + + D+ GIIY+ +D E + V D SS +V + I D ND AP + LVI SE+ T + + V D+D ++ + C +E+ ++R +K + +D ++I D R ++ D G N ++T ++ + V D NDN+P F+ V E+ +P +IDV ATD D GVN+++ Y I + + F+I+ N+G+I LDRE + Y+ V A D + T TA V I+V D ND P+ S +FSV EN P +G + +D D G+N + + P + T G++L+ +SFDRE S ++ R+ D G+ SS V I +LDENDN+P ++ P + + ++ D + V K E D+D G N ++ +++ + LF ++ IKL + + + + DKG PPR T+ ++ V
Sbjct: 43 YKLSEEQPPNTLIGSLAADL----GLPDSGHLYKLEVGSPYLRVDSKTGEIYTTEIPIDRETL---SDCRNLFEDDKCFLEFEVSITDMVKGIGLGPRLIEGIIEVLDINDNTPQFSSPILTLSIPENTHT-GTLFSIPVAVDRD-SGSNGVAEYALSAGPDANQLFGLQVAEDVDEKIPQVIVIGNLDREKKDSYDLNIRVVDGGKPPRASSAL-LRITVTDQNDNAPKFEKNQYEAELPENSPPGHSVLQVRANDADTGANGDIDYSLHQASDTVQRLLRIDRSTGIIYVKGLVDREEDNLLKFYVVARDRGPNSKSSKAQVTISIKDQNDNAPAIEIRGIGLVIHQNFVANISEDMPIGTPVALVQVSDRDEGE-NAVVTCVVAGDVPFQLRPASESANDRKRKYFLQTTTLLDYERIK-DYRIEIVAV-DSG-NPALSSTNSLKVQVTDINDNTPSFSPALLEVNFAEDNQPGDKVIDVVATDADSGVNAELVYSIIESSAASLFEINSNTGEIRVRNQLDREDVERYEFGVAAADKGVPS--KTGTAIVVINVEDRNDNDPKFMLSGYSFSVNENMPPLNPVGVVTVSDADKGENSQVTLFVEPDNGKFIIQNGT-GTILSSISFDREKES--TYTFRLKAVDAGDPPR-SSYVGVTINVLDENDNAPYVTK-PANSSYTHLKPSSPPDTPVEVVKAE------------DIDAGVNAELYYTI----TGGNPHGLFQISHNSGEIKLAQGFTGKHKGLHRLVVRVSDKGKPPRHTTALVHV 792
BLAST of Protocadherin gamma vs. Ensembl Medaka
Match: ENSORLT00000041785.1 (protocadherin gamma-C5 [Source:NCBI gene;Acc:101169865]) HSP 1 Score: 192.971 bits (489), Expect = 1.153e-49 Identity = 199/675 (29.48%), Postives = 318/675 (47.11%), Query Frame = 3
Query: 240 KYWIKENQPPGLVVGNLLDNLPYKQYFISPGYHFVLQKESEEFFSLKPGSSMLTTSKLIDLESLC-GSSDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVS--KDGK--PILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDK--TSRLQFIIVPTINVEIAKTFAIS-DQGIIYLIKHLDYETAPKYEIPVRVTDG---EFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSG---IECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSV-IICNDMG---INNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQ-----QYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRI----NESLNTFSVYENQP----IGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFEL-LTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDEN 2168
+Y I E G VVGNL +L IS V + E++FS+ G L + ID E+LC S+ C V+ L + + +Q ++ + + D+NDN P F ++ I E G L A D D+ +N+ SY+L + YF +V G+ P L++ K LD E + TH+L + A + P++ S I I + D NDN P F +++Y+V + EN E + +L+L A D D +++ P + F I+ D G I LI +LD+ET YEI V TD + + V + ++DVND AP L + + EN + T++ I D DS D+G ++ + SP F + + S+ I ++ +DR+ + +SV I D+G ++N+ +++T+ D NDN P FT Y V +KEN P L VSA+D D N++I Y I D Q Y ++ +G I + S D EK +++ V A D + +S ATVH+ ++D ND AP + + +L + S ++ P G ++ K+ A D D G N + L + + F + L G + TK + + S + L I +D GE + V + IL E+
Sbjct: 50 RYSIPEEVKHGSVVGNLAKDLGLTLTEISERALRVASESGEQYFSVDAGRGELLVNDRIDREALCRQSASC--------VLTLQVVIDKPLQLFKVEVEIIDINDNSPVFPSSEKNLQIAEST-AAGTRFPLDTALDLDVG-VNSVRSYTLSKDD-YFSLNVKDMAGGRKNPELVLSKTLDREKMPTHQLTITAVDGGNPNKSGISQ-INIYVLDNNDNFPVFEKNVYKVTLSENSEKSSIVLKLAAKDSDDGVNGEVEYSFGPQTPDAVLSVFGINKDSGEIRLIGNLDFETTSSYEIDVSATDKGTPKMEGHCSVHIEVLDVNDNAPYIFLTSQPNSVPENAPSGTVVALISARDLDSG--DNGKVTLQVPKSSP-----FKLKASFSDNYALIT---SRALDRETFS---EYSVEITATDLGSPPLSNK----KMISVTITDVNDNPPVFTQRSYNVYLKENGVPGSILFSVSASDLDSSENAKISYSILDSKVQDVSVSSYVYMNSENGSIYSMHSFDYEKLKVFEIHVQAKDQGSPSL--SSNATVHVFILDQNDNAPAVIYPSSAALGSLS-HQRMPRSAKAGHLVTKVTAVDADSGHNAWISYRLAEATDASLFTVSLYTGEVRTKRAVSEQDDSSQRLILEI--KDDGEPLQ---SATVTVSILLED 687 HSP 2 Score: 147.132 bits (370), Expect = 2.445e-35 Identity = 145/490 (29.59%), Postives = 233/490 (47.55%), Query Frame = 3
Query: 1152 RVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQ---QYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSA-FSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYN-YSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSM---KIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMV----QFADIPPRLIDQNISMGSFSN 2585
+VEV IID+ND +P F + +NL I+E+T T D D + + S +D ++ + R K + L++ +DR+++ + + I G N + + + VLD NDN P F Y V + EN + ++ ++A D DDGVN +++Y T F I+++SG+I I +LD E Y++ V ATD ++ +VHI V+DVND AP I + SV EN P GTV+ + A D D G NGK + S+ F N +L+T + DRE+ S+ +S+ IT D+G LS+K + + I D NDN P + +YN Y N SI +F + SDLD N ++++S+ K+ +S+ S Y+N +I S+ F + + AKD+GSP ++ + V Q + P + + ++GS S+
Sbjct: 136 KVEVEIIDINDNSPVFPSSEKNLQIAESTAAGTRFPLDTALDLDVGV--NSVRSYTLSKDDYFSLNVKDMAGGR-KNPELVLSKTLDREKMPTHQ---LTITAVDGGNPNKSGISQINIYVLDNNDNFPVFEKNVYKVTLSENSEKSSIVLKLAAKDSDDGVNGEVEYSFGPQTPDAVLSVFGINKDSGEIRLIGNLDFETTSSYEIDVSATDKGTPKME--GHCSVHIEVLDVNDNAPYIFLTSQPNSVPENAPSGTVVALISARDLDSGDNGKVTLQVPKSSPFKLKASFSDNYALITSRALDRETFSE--YSVEITATDLGSP-PLSNKKMISVTITDVNDNPPVFTQ-----RSYNVYLKENGVPGSI-----------LFSVSASDLDSSENAKISYSILDSKVQDVSVSS--YVYMNSENGSIYSMHSFDYEKLKVFEIHVQAKDQGSPSLSSNATVHVFILDQNDNAPAVIYPSSAALGSLSH 596
BLAST of Protocadherin gamma vs. Planmine SMEST
Match: SMESG000020970.1 (SMESG000020970.1) HSP 1 Score: 2233.37 bits (5786), Expect = 0.000e+0 Identity = 1127/1133 (99.47%), Postives = 1130/1133 (99.74%), Query Frame = 3
Query: 186 GHSFVSARDSSSLSFGTIKYWIKENQPPGLVVGNLLDNLPYKQYFISPGYHFVLQKESEEFFSLKPGSSMLTTSKLIDLESLCGSSDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAISDQGIIYLIKHLDYETAPKYEIPVRVTDGEFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADIPPRLIDQNISMGSFSNXXXXXXXXXXXXXXXXXXXXXXXGAIICMWQPCGNKRQSANCRNGVMRDNANDNLRIKGYQDSYLVTSSIIDSVENDETEFKTSVSHIQQNDYCKSEHHWTHEIDETGRPINYYTLPPQLLACTTTTSHEEQRSDSGRGASDEDNPHYNSNSDVFQYKSLYSMIPSVAYTSMTDAINSLTTTIPLSLSKKTILSQIPMECLASSINNEYPLKSCGDNFSYVCTSALPFYSISCGQNVPLLQPAMSSVPESDLNIPLLNLDSYNICNNQPGFNSFSPVNVATDNVNLSYGSGTYPSKNSSRIDNFDDDMVNLSSHIDQLFFSKLPNRPQPFGKG 3584
GHSFVSARDSSSLSFGTI YWIKENQPPGLVVGNLLDNLPYKQYFISPGYHFVLQKESEEFFSLKPGSSMLTTSKLIDLESLCGSSDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASL ITIVIDDINDNEPRFSQSIY+VPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAISDQG+IYLIKHLDYETAPKYEIPVRVTDGEFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTL+KTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNR TATFTVTLTVLDANDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADIPPRLIDQNISMGSFSNVKINVLIIIILVTISTVLTTALIGAIICMWQPCGNKRQSANCRNGVMRDNANDNLRIKGYQDSYLVTSSIIDSVENDETEFKTSVSHIQQNDYCKSEHHWTHEIDETGRPINYYTLPPQLLACTTTTSHEEQRSDSGRGASDEDNPHYNSNSDVFQYKSLYSMIPSVAYTSMTDAINSLTTTIPLSLSKKTILSQIPMECLASSINNEYPLKSCGDNFSYVCTSALPFYSISCGQNVPLLQPAMSSVPESDLNIPLLNLDSYNICNNQPGFNSFSPVNVATDNVNLSYGSGTYPSKNSSRIDNFDDDMVNLSSHIDQLFFSKLPNRPQPFGKG
Sbjct: 29 GHSFVSARDSSSLSFGTINYWIKENQPPGLVVGNLLDNLPYKQYFISPGYHFVLQKESEEFFSLKPGSSMLTTSKLIDLESLCGSSDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLSITIVIDDINDNEPRFSQSIYKVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAISDQGMIYLIKHLDYETAPKYEIPVRVTDGEFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLSKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRLTATFTVTLTVLDANDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADIPPRLIDQNISMGSFSNVKINVLIIIILVTISTVLTTALIGAIICMWQPCGNKRQSANCRNGVMRDNANDNLRIKGYQDSYLVTSSIIDSVENDETEFKTSVSHIQQNDYCKSEHHWTHEIDETGRPINYYTLPPQLLACTTTTSHEEQRSDSGRGASDEDNPHYNSNSDVFQYKSLYSMIPSVAYTSMTDAINSLTTTIPLSLSKKTILSQIPMECLASSINNEYPLKSCGDNFSYVCTSALPFYSISCGQNVPLLQPAMSSVPESDLNIPLLNLDSYNICNNQPGFNSFSPVNVATDNVNLSYGSGTYPSKNSSRIDNFDDDMVNLSSHIDQLFFSKLPNRPQPFGKG 1161
BLAST of Protocadherin gamma vs. Planmine SMEST
Match: SMESG000029841.1 (SMESG000029841.1) HSP 1 Score: 438.343 bits (1126), Expect = 3.735e-134 Identity = 335/967 (34.64%), Postives = 524/967 (54.19%), Query Frame = 3
Query: 237 IKYWIKENQPPGLVVGNLLDNLPYKQ---YFISP--GYHFVLQKESEEFFSLKPGSSMLTTSKLIDLESLCGSSDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAISDQGIIYLIKHLDYETAPKYEIPVRVTDGEFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGSPNDAMRFDITE--NNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFIS-DHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDF--IAAYNYSDNNTTDCS-----ITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADIPPR--LIDQNISMGSFSNXXXXXXXXXXXXXXXXXXXXXXXGAIICMWQPCG--NKRQSANCRNGVMRDNANDNLRIKGYQDSYLVTSSIIDSVENDETEFKTSVSHIQQNDYCKSEHHWTHEIDETGRPINYYT-------LPPQLLAC-------------TTTTSHEEQRSDSGRGASDEDN 3020
++Y I+ENQP GLV+G + +++ +F++ F+L +ES F L+ S +L T ++IDLE LC +C + + ++++I++D+NDN P+F+ ++ +IKE++Y GK+I LPRA D+D+S+ NN+ISY L+++S YF + +P+L+++K +D+E I+ L L+AWN +PS + L I I + DINDNEP FS+ +Y +P+ EN + + ++ A D D S+L++ ++ I F I QG I L++ LDYET P Y + +VTDGEF + +++ VIIDVND PQF LNP N+ + EN+ K + + VYD+DS ++ ++C E PN + I N + I L + +DRD +NGD++++ +IC D GI R T+TFT+T+ VLD NDN P FT + VKEN + P+ A D D G+N+++ Y + + T+ +IDENSGK+ ++ DRE++ +Y++ ++ATD + + + +++ +V+I V+D ND P++ N F++ ENQP T IG L A D D G N IF+L+ S +F LL NGSL ++ FDRE + +FSL + + D G S K+ + +KILD+NDN+P I+ +P+F + S N+ D + + VS S PI D D G NG+V + K L L+ + + S + + + T++A D G P R + K +M F + P LI + + S S N+LI+IIL S LT L+ AI+CM QPC N+R+ A+ N + N N N S++D++ EF S + ++I E+ +N+ P +L+AC T TS EEQRSDSGRGASDEDN
Sbjct: 38 LQYNIEENQPAGLVIGKISEDIKRNSNPVWFLTSDSNLRFLLSQESS-LFELESKSGVLKTKQVIDLERLC-PGNCIKDKGVVNLTVNIWSPSNLQGIAKVSVIIDDINDNFPYFEQSTVEISIKEMLYTRGKTIKLPRAVDRDVSMKNNEISYKLKDSSDYFDLEMKTKFQPVLVVLKTMDSENINQFHLALLAWNSYFPSFNVSELKIIINVIDINDNEPFFSKPLYLIPVPENTPVGSIVHKISALDLDVDSQLRYYSADPGSL-ITSIFKIEIQGSIRLLRSLDYETQPFYHMSAKVTDGEFIAFTKLKFVIIDVNDETPQFNLNPTNISVFENSEPKE-IAQVTVYDRDSEDINGKLKCYE--PNYSTNKQIVSFLPNINNPYQFTIKLIRSLDRDILNGDQQYATLICEDNGIPTRLTSTFTLTINVLDRNDNRPIFTQPFVQIAVKENSPTEIPIYTFGAEDIDRGLNARVIYSVMLNTTNDDCCRIDENSGKLFSFKTFDREQRSFYKLIIIATDQSQIDPKQSTSISVNITVLDENDEKPQLLPPYN-FTILENQPQMTYIGLLKAQDKDEGANSGIIFSLVTDINSVFFLLLKNGSLYSRRRFDRE--EKEEFSLDVNLEDSGLHHTNSVKSRIYVKILDQNDNAPVIN-LPEFEKVLFQTQSKNSELDQNNYFYRLNVSIHSSVQYPIGQIKVVDRDIGENGKVTLKLIPELQDPKVPNLLSLDEEKNELYTTSSLNRDLKDCYQYTILAMDHGRPNRRSEKKVMFCFVNQPVETPLIPEKERVSSLSK--ANILIVIILAGTSAFLTALLVSAILCMIQPCKELNRRRYAHSHNVLDSSNQNPN-------------ESMMDNLLKSREEFDES---------------FLNKISESSVDLNFNVQNKLQDNWPLKLMACSDLNCQSVIMPQSTFVTSTEEQRSDSGRGASDEDN 964
BLAST of Protocadherin gamma vs. Planmine SMEST
Match: SMESG000046654.1 (SMESG000046654.1) HSP 1 Score: 436.417 bits (1121), Expect = 3.380e-133 Identity = 347/987 (35.16%), Postives = 518/987 (52.48%), Query Frame = 3
Query: 231 GTIKYWIKENQPPGLVVGNL------LDNLPYKQYFISPGYHFVLQKESEEFFSLKPGSSMLTTSKLIDLESLCGSSDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAISDQGIIYLIKHLDYETAPKYEIPVRVTDGEFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECRE--GSPN-DAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNY-SDNNTTDCSITVSKTESTNSPIFPFTFS---DLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADIPPRLIDQNISMGSFSNXXXXXXXXXXXXXXXXXXXXXXXGAIICMWQPC-------GNKRQSANCRNGVMRDNA----NDNLRIKG-----YQDSY---------LVTSSIIDSVENDETEFKTSVSHIQQNDYCKSEHHWTHEIDETGRPINYYTLPPQLLACTTTTSH----------EEQRSDSGRGASDEDNPHYNSNSDV 3047
G + Y I+EN P G+ VG + + N+ + F+ ++F ++ E+F+L SS+L T+K IDLE LC +G +V V ++ Q + + I++ D NDN P F S+ K IKEI+YG GK+I+LP+A DKD++ IN+++ Y L + S F +SKD P L + K++D ET + + L LIAWN + + L I I I D+ND EP F + ++ + + EN ++ I++L+ATDKDK S+L + +V + N +TFA+ + G + L+K LD E YEIPV TDGEF+SN ++ + + DVN+ P + LNP +L + EN L+G I V D D++ V+ I C+E G N ++F T K +++ ++DR++ R +IC+D G++ R T+T +TL VLD NDN P F++ Y ++KEN ++ V A DKDD N+QIKY I + +F I+ NSG I I+ LDRE++ YQ+ ++A + ++ + +T TV+I V D ND P I + EN IG +I+ D D G NGK +F+LI S + YF+L NGSL +K++FDRE + + L I V D+G I SS +C+ ILD+NDN+P ISV S NN+ + + K +P F + D D G N QV F+M+ S + LF ++ +IK+ R + + + +IA DKG T K+I +Q DIPP Q+ ++G V NVLI+IIL TIS LT LIGAI+CM +PC N + N NG + NL G Y+ S+ L ++ +D EN+ E V + Y SE+ H +D +N + C ++H EEQ SDSGRGASD+D N N V
Sbjct: 23 GNLNYTIQENHPSGIQVGFISSDITQIPNIDLPK-FLDSSFYFTF-RDKNEYFTLDRQSSVLKTAKKIDLEILCPKFCNDDGVGFLNLVVNVWKENQLRGVINVKIVIHDQNDNVPMFLMKSFVKKIKEILYGVGKTIELPKAIDKDVTEINSRVLYKLNKASDTFELQISKDNTPRLRLTKDIDYETKNFYELTLIAWNNGH-DELKSYLEIKIEIIDMNDCEPVFKKGLFELVLDENTKIGKLIIKLEATDKDKDSKLVYGMVSSTNSINRETFAVKETGEVILMKTLDVEFRQTYEIPVYATDGEFTSNSKIRIFVRDVNNHPPSYNLNPASLTLEENQPPNILVGQINVKDVDASDVNGDIRCQEPLGKSNLQDLKFVPDPAEYPLTVKYDMFSRVQLDREE--APTRTIYLICHDGGLHERLTSTSVITLQVLDVNDNPPVFSIPFYKAQIKENNNIGDKVLQVVAHDKDDKENAQIKYSILEGP-TNFFSINPNSGWITAIRRLDREEKINYQLAILAINKSLKAL-FNATTTVNIEVTDENDNVPEIYLP-KKLEIMENLKPNQFIGNIISEDKDFGNNGKTVFSLINSKETDYFDLKRNGSLFSKITFDRELKDE--YCLNIRVNDLGVPISRSSTKPICVNILDDNDNAPVISVHSTLKEQDQLESKNNSQNLGSEIIKASVYENPGFKIATAVADDADKGENAQVTFTMEDITDSNQIAPLFIIDEDNGSIKISRIMSRDVIGDYKMKIIACDKGKSSLRTEKIIRIQIQDIPP----QSSTIGPKIQVTGNVLIVIILSTISAFLTALLIGAILCMIRPCCQSSLSQSNYQVDLNNSNGQTLLQKLPPPHYNLYTYGPFEPSYESSWNQTLNRNDRLCSNVTLDFYENNPLEKPEYVGYESPRMYL-SENTLCH-VDHIVGKLNGCSCGRG--GCVRYSNHGNPNCLSPNPEEQCSDSGRGASDDDMKALNVNGSV 991
BLAST of Protocadherin gamma vs. Planmine SMEST
Match: SMESG000036716.1 (SMESG000036716.1) HSP 1 Score: 374.015 bits (959), Expect = 9.055e-112 Identity = 300/897 (33.44%), Postives = 469/897 (52.29%), Query Frame = 3
Query: 237 IKYWIKENQPPGLVVGNLLDNLPYKQYFI----SPGYHFVLQKESEEFFSLKPGSSMLTTSKLIDLESLCGSSDCYNGTKEFQVVALVMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQET--STYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAISDQGIIYLIKHLDYETAPKYEIPVRVTDGEFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECREGS---PNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFI----SDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLTNGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKISVIPDFIAAYNYSDNNTTD---CSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSN-QLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADIPPRLIDQNISMGS-FSNXXXXXXXXXXXXXXXXXXXXXXXGAIICMWQPCGNKRQSANCRNGVMR----DNANDNLRIKGYQDSYLVTSSIIDSVENDETEFKTSVSHIQQND 2861
IKY IKENQP +G + +++P I S ++ QK+ +F L +S+L T LIDLE LC + +V V +R+ I V+DVNDN P F +S K++KE+IYG GKS++L +A D+D+S +N ++Y L S F V+ D PIL++ K LD E + L + AWN ++ T L ITI + +IND EP+F Q Y V + EN+ +N I+Q++A D+D+ S + + ++ F++S +G I+L + LD+ET + I V+ +D EF++N +V + ++DVND APQF LNP I E ++G I ++D+DS + + C E A+ F ++ K ++Y DR++ D + +I+C+D N T+T T++LT+ D NDN+P F Y V ++EN +I V+ATDKD G N + Y I S + + F ID +SG + LDREK+ +YQ+ +VA D + TS+ T++I +IDVND +P+ ++EN+ GT +G LIATD D G NGK +F L+P+ ++F L NGSL + FDRE+ ++ L+I + D G + LS VCI ILD NDN P++ + PD+ Y + DN+T +I +S ES I SDLD+G N F ISL ++ +F ++ +++KR ++ + V +I +D G P + S+ I+V+ DI RL +++ S I I++ S +L I ++C+ +PC N+ + + V R D + NL +K Q YL T+ N + E T + +I Q D
Sbjct: 33 IKYAIKENQPGQTRIGKISEDVPLSTQMILRNLSEKINYRFQKQLS-YFVLDSNTSILKTKTLIDLEELCPDHCPTGEMGQLYLVVNVWDGLSLKGIIRVEINVQDVNDNVPTFLTSSILKSVKEVIYGVGKSMELQKAIDRDVSKEHNTVTYKLDADIYSDTFMLKVTNDSFPILVLKKALDYERCKLYNLAIWAWNSPADNQKT-KLSITIRVVNINDMEPKFKQHKYEVSVEENLPINSMIIQVEAVDEDEDSEITYRSADFS----SQYFSVSSKGQIFLKRPLDFETTSLHLIDVQASDNEFNANTKVVINVVDVNDEAPQFNLNPSFCRIEEGQPENIIIGQITIWDRDSDAANGKLSCWEPRNLYNKQAVIFKPPLDSKTFYGKYDLYTRVRFDREETIDDVKKVIIVCDDGAAKNPLTSTMTISLTIADINDNTPIFEKAVYSVSIEENNPVDAKVIKVTATDKDIGRNGLVTYEIDNLRSMNPEKSLFVIDSDSGWVTATLKLDREKESFYQLIIVAKDKGTMPKQQTSSCTINITIIDVNDNSPKF-IGPKKLEIFENEKPGTEVGILIATDNDEGDNGKLLFKLLPNHNENFFYLTINGSLQSAKEFDRETTD--RYCLQIEINDQG-KTPLSITHTVCINILDVNDNPPRL-IFPDYHPKYTWIDNSTVQKESITIDLSIYESPGFEILKCEASDLDEGENAAFHFR-----ISLPNDPDIFSIDPQIGILRVKRKLKKELIGDYNVQIIVEDNGKPSKMHSQKILVRIQDI-LRLEERSKRQKSEHWTKSNKFQIAIMISIASAILMLIFISTVLCIIKPCSNRPNNRGDYSSVGRQFLCDTKSSNLEMKNEQ--YLFTT-------NFDHEKPTYIPNIYQRD 903
BLAST of Protocadherin gamma vs. Planmine SMEST
Match: SMESG000005850.1 (SMESG000005850.1) HSP 1 Score: 342.043 bits (876), Expect = 1.021e-99 Identity = 255/784 (32.53%), Postives = 412/784 (52.55%), Query Frame = 3
Query: 231 GTIKYWIKENQPPGLVVGNLLDNLPYKQYFISPGYHFVLQKESEEFFSLKPGSSMLTTSKLIDLESLCGSSDCYNGTKEFQVVAL---VMRDKQFIQELRINIIVEDVNDNDPFFKNASYTKNIKEIIYGPGKSIDLPRAFDKDLSLINNQISYSLQETSTYFHFSVSKDGKPILIIIKELDAETIDTHRLILIAWNQNYPSRPTASLPITIVIDDINDNEPRFSQSIYRVPILENVELNHQILQLKATDKDKTSRLQFIIVPTINVEIAKTFAISDQGIIYLIKHLDYETAPKYEIPVRVTDGEFSSNGRVEVVIIDVNDCAPQFTLNPENLVISENTLTKTLLGNIVVYDQDSAYVDSGIECRE-GSPNDAMRFDITENNSERTKKINIYLNQEIDRDQINGDRRFSVIICNDMGINNRXXXXXXXXXXXXXXNDNSPQFTLTDYVVRVKENLKPQYPLIDVSATDKDDGVNSQIKYFISDHTHQQYFKIDENSGKIIGIQSLDREKQDYYQVTVVATDLAINEIRHTSTATVHIHVIDVNDCAPRINESLNTFSVYENQPIGTVIGKLIATDCDIGQNGKFIFTLIPSAFSHYFELLT---NGSLLTKVSFDRESLSQVKFSLRITVRDIGEEIHLSSKTAVCIKILDENDNSPKI-------SVIPDFIAAYNYSDNNTTDCSITVSKTESTNSPIFPFTFSDLDDGPNGQVAFSMKIYPISLKSNQLFYLNVTEKAIKLKRSWQQSDGNRFLVTLIAKDKGSPPRETSKVIMVQFADIP 2540
G K+ I+ENQP VG + KQ Y F L + FS+ P S + TSK+IDLE+LC +S C KE ++L V R K I ++I II+ D++DN P F+ +T IKE+I+ I LP A DKD+S+ N +I+Y + + F+ P L ++ ++D E +R L A+ +N S +A++ +T+ + +IND P FS++IY + E++ L+ I+++ A D D L++I++P N F I++ G ++LI+ LD+E + ++ TDGEF + ++++ ++DVND P + LNPE LVI E + L+G I V+D+DS ++ GI+C E A+R + + +++ +Y +DR+ I ++ IC D GI + ++ L V D NDN+P F + Y V VKEN Y L ATD+D G N+ I Y I F ID +G + +Q LDREK++ Y +T+VA D A+++ R + + + I V+D ND AP + E + FS+ EN PIG IG LIA D D G+N + +F L + H ++ LT GSL + FDRE S+V ++++ IG L+S +VC+ ILDENDN P+I + + + + Y++++ D + +S E I +D D Q+++ ++ +F ++ I + R + V ++ +D G P +++K IMV+ DIP
Sbjct: 29 GVQKFTIEENQPIKTFVGRIK---FAKQIDEELSYSFGL---ITDIFSIDPKSGDIHTSKVIDLEALCFNS-C--ADKESATISLNVNVNRQKTLISVMKIVIIILDIDDNKPEFEKPEFTMEIKEVIHRKNMVIYLPAAVDKDISMKNKEIAYRMSGDHSAFNLEEHNSRGPRLRLLIDIDYEKQKQYRFTLSAYQKNDESM-SANMNVTLQVVNINDCAPEFSKTIYEESVYEDISLDEIIIKVNAVDADG-DNLRYILLPMTNY-----FQINNDGELHLIQKLDFEKHQSFSFTIQATDGEFVAESKLKITVLDVNDEPPSYILNPEKLVIDETNKSGILVGQITVFDRDSVSINRGIKCTETNHETQALRLEKDQMSTDILLIYKLYTVHSLDRETIPDGIIYTNFICYDSGIKRQLYTNISIPLNVHDINDNAPLFPSSQYQVGVKENNDIGYQLFQAQATDEDIGKNALITYNIQFSVDSGLFVIDSRTGWLKLMQPLDREKKNQYMLTIVAIDQAVHD-RKSGSTQLTITVLDDNDNAPELREYTD-FSILENLPIGHYIGTLIAFDKDEGENARIMFKL---SMDHLYQPLTVNKTGSLFSNQVFDREKKSKVCTQIQLSDSAIGNV--LTSHVSVCVNILDENDNYPQIFLYEKDETTLINSLFNNTYTEHSNVDYVVKMSIREKVGFVIAVVKATDNDVNNVSQLSYYLENSASENLQQSIFDIDKKSGKITINRPLHRDLIGLQKVKVMVEDSGHPSLKSAKTIMVEILDIP 789 The following BLAST results are available for this feature:
BLAST of Protocadherin gamma vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of Protocadherin gamma vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 5
BLAST of Protocadherin gamma vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 5
BLAST of Protocadherin gamma vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of Protocadherin gamma vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of Protocadherin gamma vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of Protocadherin gamma vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of Protocadherin gamma vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Protocadherin gamma vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of Protocadherin gamma vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 5
BLAST of Protocadherin gamma vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Protocadherin gamma vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 5
BLAST of Protocadherin gamma vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of Protocadherin gamma vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30032627 ID=SMED30032627|Name=Protocadherin gamma|organism=Schmidtea mediterranea sexual|type=transcript|length=3694bpback to top protein sequence of SMED30032627-orf-1 >SMED30032627-orf-1 ID=SMED30032627-orf-1|Name=SMED30032627-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1162bp MSSGFKLEFSFLNFLLLRLSVMLFDLVLGHSFVSARDSSSLSFGTIKYWIback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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