Charged multivesicular body protein 1b

Overview
NameCharged multivesicular body protein 1b
Smed IDSMED30032593
Length (bp)755
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Charged multivesicular body protein 1b (SMED30032593) t-SNE clustered cells

Violin plots show distribution of expression levels for Charged multivesicular body protein 1b (SMED30032593) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Charged multivesicular body protein 1b (SMED30032593) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Charged multivesicular body protein 1b (SMED30032593) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30032593

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 3

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
intestinal phagocyteSMED30032593h1SMcG0013844 Contig45GPL15192PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
gutSMED30032593h1SMcG0013844 dd_Smed_v4_630_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30032593h1SMcG0013844 dd_Smed_v4_630_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Charged multivesicular body protein 1b vs. Ensembl Human
Match: CHMP1B (charged multivesicular body protein 1B [Source:HGNC Symbol;Acc:HGNC:24287])

HSP 1 Score: 224.557 bits (571), Expect = 8.776e-74
Identity = 137/195 (70.26%), Postives = 169/195 (86.67%), Query Frame = 3 
Query:   84 MDKHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQALNYRRMSSRIDAVSARVQTALTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFENLDVQSQVMENTMCNXXXXXXPQNQVESLMHEVADEAGIELNMQLPAGQNTAVGGASSQAAQEQDELTQRLAKLR 668
            M+KHLFNLKFAAK+L R+AKKC+K EK EK K+K AIQKGNME A+IHAENAIRQKNQA+N+ RMS+R+DAV+ARVQTA+TM  VT SMAGVVKSM++ +K+MNLEK+S LMD+FE  FE LDVQ+Q ME+TM +TTTLTTPQNQV+ L+ E+ADEAG++LNM+LP GQ  +VG  +S A+ EQDEL+QRLA+LR
Sbjct:    4 MEKHLFNLKFAAKELSRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVG--TSVASAEQDELSQRLARLR 196
[Close]
BLAST of Charged multivesicular body protein 1b vs. Ensembl Human
Match: CHMP1A (charged multivesicular body protein 1A [Source:HGNC Symbol;Acc:HGNC:8740])

HSP 1 Score: 168.318 bits (425), Expect = 9.285e-52
Identity = 102/198 (51.52%), Postives = 152/198 (76.77%), Query Frame = 3 
Query:   84 MDKHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQALNYRRMSSRIDAVSARVQTALTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFENLDVQSQVMENTMCNXXXXXXPQNQVESLMHEVADEAGIEL---NMQLPAGQNTAVGGASSQAAQEQDELTQRLAKLR 668
            MD  LF LKF AK LE+ AKK EK  K E+ K+K A+ + N+E A+++AENAIR+KN+ +N+ RM+SR+DAV+++VQTA+TMK VT +MA V K+++ A+ +M+L+KVS +MDRFE+  +NLDV + VME++M + TTLTTPQ QV+SL+ ++A+E G+E+     QLP G  +AVG +S ++  ++D+L++RLA LR
Sbjct:    1 MDDTLFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQNLDVHTSVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLPEG-ASAVGESSVRS--QEDQLSRRLAALR 195
[Close]
BLAST of Charged multivesicular body protein 1b vs. Ensembl Human
Match: CHMP1A (charged multivesicular body protein 1A [Source:HGNC Symbol;Acc:HGNC:8740])

HSP 1 Score: 147.132 bits (370), Expect = 1.528e-43
Identity = 95/198 (47.98%), Postives = 144/198 (72.73%), Query Frame = 3 
Query:   84 MDKHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQALNYRRMSSRIDAVSARVQTALTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFENLDVQSQVMENTMCNXXXXXXPQNQVESLMHEVADEAGIEL---NMQLPAGQNTAVGGASSQAAQEQDELTQRLAKLR 668
            MD  LF LKF AK LE+ AKK EK  K E+ K+K A+ + N+E A+++AENAIR+KN+ +N+ RM+SR+DAV+++V         T +MA V K+++ A+ +M+L+KVS +MDRFE+  +NLDV + VME++M + TTLTTPQ QV+SL+ ++A+E G+E+     QLP G  +AVG +S ++  ++D+L++RLA LR
Sbjct:    1 MDDTLFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKV---------TKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQNLDVHTSVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLPEGA-SAVGESSVRS--QEDQLSRRLAALR 186
[Close]
BLAST of Charged multivesicular body protein 1b vs. Ensembl Human
Match: CHMP1A (charged multivesicular body protein 1A [Source:HGNC Symbol;Acc:HGNC:8740])

HSP 1 Score: 125.946 bits (315), Expect = 2.018e-35
Identity = 69/128 (53.91%), Postives = 100/128 (78.12%), Query Frame = 3 
Query:   84 MDKHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQALNYRRMSSRIDAVSARVQTALTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFENLDVQSQV 467
            MD  LF LKF AK LE+ AKK EK  K E+ K+K A+ + N+E A+++AENAIR+KN+ +N+ RM+SR+DAV+++VQTA+TMK VT +MA V K+++ A+ +M+L+KVS +MDRFE+  +NLDV + V
Sbjct:    1 MDDTLFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQNLDVHTSV 128
[Close]
BLAST of Charged multivesicular body protein 1b vs. Ensembl Human
Match: CHMP1A (charged multivesicular body protein 1A [Source:HGNC Symbol;Acc:HGNC:8740])

HSP 1 Score: 119.783 bits (299), Expect = 1.466e-33
Identity = 68/134 (50.75%), Postives = 105/134 (78.36%), Query Frame = 3 
Query:  276 MSSRIDAVSARVQTALTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFENLDVQSQVMENTMCNXXXXXXPQNQVESLMHEVADEAGIEL---NMQLPAGQNTAVGGASSQAAQEQDELTQRLAKLR 668
            M+SR+DAV+++VQTA+TMK VT +MA V K+++ A+ +M+L+KVS +MDRFE+  +NLDV + VME++M + TTLTTPQ QV+SL+ ++A+E G+E+     QLP G  +AVG +S ++  ++D+L++RLA LR
Sbjct:    1 MASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQNLDVHTSVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLPEG-ASAVGESSVRS--QEDQLSRRLAALR 131
[Close]
BLAST of Charged multivesicular body protein 1b vs. Ensembl Celegans
Match: did-2 (Doa4-Independent Degradation, homologous to yeast Did2 [Source:UniProtKB/TrEMBL;Acc:Q9TXI3])

HSP 1 Score: 221.861 bits (564), Expect = 4.793e-73
Identity = 125/195 (64.10%), Postives = 158/195 (81.03%), Query Frame = 3 
Query:   84 MDKHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQALNYRRMSSRIDAVSARVQTALTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFENLDVQSQVMENTMCNXXXXXXPQNQVESLMHEVADEAGIELNMQLPAGQNTAVGGASSQAAQEQDELTQRLAKLR 668
            ++KHLF+LKFAAK LE+NA++CEK EK EK KL  AI+KGN E AQ+HAENAIR+KN+A+NY +M++RIDAV+ARVQTA T K VT SM+GVVK+MESAMKSMNLEKV QLMDRFE+DFE+LDV ++ ME TM  TT L  P++QV++L+ E AD+AGIELN +LP+   TA+    +QA  E  +LT+RLA LR
Sbjct:   10 LEKHLFDLKFAAKQLEKNAQRCEKDEKVEKDKLTAAIKKGNKEVAQVHAENAIRKKNEAVNYIKMAARIDAVAARVQTAATQKRVTASMSGVVKAMESAMKSMNLEKVQQLMDRFERDFEDLDVTTKTMEKTMDGTTVLNAPKSQVDALIAEAADKAGIELNQELPSNVPTAL-PTGTQAVSEDKDLTERLAALR 203
[Close]
BLAST of Charged multivesicular body protein 1b vs. Ensembl Celegans
Match: vps-2 (Related to yeast Vacuolar Protein Sorting factor [Source:UniProtKB/TrEMBL;Acc:Q9U2F6])

HSP 1 Score: 67.3958 bits (163), Expect = 3.592e-13
Identity = 39/138 (28.26%), Postives = 80/138 (57.97%), Query Frame = 3 
Query:  195 QKGNMEGAQIHAENAIRQKNQALNYRRMSSRIDAVSARVQTALTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFENLDVQSQVMENTMCNXXXXXXPQNQVESLMHEVADEAGIELNMQLPAGQNTAVGG 608
            +K  M+  ++ A++ +R +     +  M + I AVS +VQT  +  A+  +M GV K+M+S  + +NL ++ ++M  FEK  E +D++ +VM + + +       + + + ++++V DE GI++  ++ AG  +A GG
Sbjct:   52 KKNQMDSVKVMAKDLVRTRRYIKKFIVMKANIQAVSLKVQTLKSQDAMASAMKGVTKAMQSMNRQLNLPQIQKIMMEFEKQSEIMDMKEEVMGDAIDDALGDAGDEEETDQIVNQVLDELGIQMGEEM-AGLPSAAGG 188
[Close]
BLAST of Charged multivesicular body protein 1b vs. Ensembl Celegans
Match: C01A2.4 (pep chromosome:WBcel235:I:13392118:13394001:1 gene:WBGene00007216.1 transcript:C01A2.4.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:C01A2.4)

HSP 1 Score: 54.299 bits (129), Expect = 1.027e-8
Identity = 45/157 (28.66%), Postives = 83/157 (52.87%), Query Frame = 3 
Query:  198 KGNMEGAQIHAENAIRQKNQALNYRRMSSRIDAVSARVQTALTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFENLDVQSQVMENTMCNXXXXXXPQNQVESLMHEVADEAGIELNMQLPAGQNTAVGGASSQAAQEQDELTQRLAKLR 668
            KG+ + A+  A+  ++ +NQ      MS+RI  V A+     +M  +  +M   VK+M++    M LEKV+  M  F+   E + +  ++M +T+ +        ++ ++++++V DE GIE+N +L A         SS A  + D+L  +LA+LR
Sbjct:   51 KGHNDAARHLAKQLVQLRNQKTKSIGMSARISGVQAQNSHMQSMAKMGSAMGTTVKTMKAMNAQMPLEKVAANMREFQMAQEKMGLTEEMMNDTLDSILDAPGDADEQDAIVNQVLDEIGIEMNSKL-ANVPALPTKVSSTAPADFDDLEAQLARLR 206
[Close]
BLAST of Charged multivesicular body protein 1b vs. Ensembl Fly
Match: Chmp1 (gene:FBgn0036805 transcript:FBtr0345383)

HSP 1 Score: 247.669 bits (631), Expect = 3.757e-83
Identity = 134/196 (68.37%), Postives = 166/196 (84.69%), Query Frame = 3 
Query:   84 MDKHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQALNYRRMSSRIDAVSARVQTALTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFENLDVQSQVMENTMCNXXXXXXPQNQVESLMHEVADEAGIELNMQLPAGQNTAVGGASSQAAQEQDELTQRLAKLRQ 671
            M+KHLFNLKFA K+LERN+KKCEK EK EK K K AIQKGNM+ A+IHAENAIRQKNQA+NY RMS+R+DAV++RVQ+ALT + VTGSMAGVVK+M++AMK MNLEK+S LM++FE  FE+LDVQS VME TM +T T + PQ  V++L+ +VADEAG+ELNM+LP+G  +   GAS+  +QEQDELTQRLA+LRQ
Sbjct:    6 MEKHLFNLKFAVKELERNSKKCEKEEKLEKAKAKKAIQKGNMDVARIHAENAIRQKNQAVNYLRMSARVDAVASRVQSALTTRKVTGSMAGVVKAMDAAMKGMNLEKISSLMEKFESQFEDLDVQSSVMEGTMSDTVTTSVPQGDVDNLLQQVADEAGLELNMELPSGVQSQSVGASTAVSQEQDELTQRLARLRQ 201
[Close]
BLAST of Charged multivesicular body protein 1b vs. Ensembl Fly
Match: Chmp1 (gene:FBgn0036805 transcript:FBtr0075092)

HSP 1 Score: 247.669 bits (631), Expect = 3.757e-83
Identity = 134/196 (68.37%), Postives = 166/196 (84.69%), Query Frame = 3 
Query:   84 MDKHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQALNYRRMSSRIDAVSARVQTALTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFENLDVQSQVMENTMCNXXXXXXPQNQVESLMHEVADEAGIELNMQLPAGQNTAVGGASSQAAQEQDELTQRLAKLRQ 671
            M+KHLFNLKFA K+LERN+KKCEK EK EK K K AIQKGNM+ A+IHAENAIRQKNQA+NY RMS+R+DAV++RVQ+ALT + VTGSMAGVVK+M++AMK MNLEK+S LM++FE  FE+LDVQS VME TM +T T + PQ  V++L+ +VADEAG+ELNM+LP+G  +   GAS+  +QEQDELTQRLA+LRQ
Sbjct:    6 MEKHLFNLKFAVKELERNSKKCEKEEKLEKAKAKKAIQKGNMDVARIHAENAIRQKNQAVNYLRMSARVDAVASRVQSALTTRKVTGSMAGVVKAMDAAMKGMNLEKISSLMEKFESQFEDLDVQSSVMEGTMSDTVTTSVPQGDVDNLLQQVADEAGLELNMELPSGVQSQSVGASTAVSQEQDELTQRLARLRQ 201
[Close]
BLAST of Charged multivesicular body protein 1b vs. Ensembl Fly
Match: Vps2 (gene:FBgn0039402 transcript:FBtr0084967)

HSP 1 Score: 65.4698 bits (158), Expect = 2.799e-12
Identity = 39/150 (26.00%), Postives = 85/150 (56.67%), Query Frame = 3 
Query:  195 QKGNMEGAQIHAENAIRQKNQALNYRRMSSRIDAVSARVQTALTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFENLDVQSQVMENTMCNXXXXXXPQNQVESLMHEVADEAGIELNMQL-----PAGQNTAVGGASSQAAQ 629
            ++G M+  +I A++ +R +  A  +  M + I AVS ++QT  +   +  +M GV K+M++  + +NL ++ +++  FEK  E +D++ +++ + + +       + + ++++ +V DE G++L  QL      +G  +  GGA +Q AQ
Sbjct:   52 KEGQMDAVKIMAKDLVRTRRYAKKFMLMKANIQAVSLKIQTLKSQNTMAQAMKGVTKAMQNMNRQLNLPQIQKILQDFEKQSEMMDMKEEMINDAIDDAMEDEGDEEETDAVVSQVLDELGLQLGEQLGDLPSASGSLSIAGGAGAQKAQ 201
[Close]
BLAST of Charged multivesicular body protein 1b vs. Ensembl Zebrafish
Match: chmp1b (chromatin modifying protein 1B [Source:NCBI gene;Acc:336426])

HSP 1 Score: 228.409 bits (581), Expect = 1.856e-75
Identity = 134/195 (68.72%), Postives = 169/195 (86.67%), Query Frame = 3 
Query:   84 MDKHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQALNYRRMSSRIDAVSARVQTALTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFENLDVQSQVMENTMCNXXXXXXPQNQVESLMHEVADEAGIELNMQLPAGQNTAVGGASSQAAQEQDELTQRLAKLR 668
            M+KHLFNLKFAAK+L+RN+KKC+K EK EK K+K AIQKGNME A+IHAENAIRQKNQ++N+ RMS+R+DAV+ARVQTA+TM  VT SMAGVVK M++ +KSMNLEK+S LM++FE+ FE LDVQ+  ME++M +TTTLTTPQ QV++LM E+ADEAG++LNM+LP GQ  +VG  +S A+ EQDEL+QRLAKLR
Sbjct:    4 MEKHLFNLKFAAKELQRNSKKCDKEEKAEKVKVKKAIQKGNMEVARIHAENAIRQKNQSVNFLRMSARVDAVAARVQTAVTMNQVTKSMAGVVKGMDATLKSMNLEKISGLMEKFERQFETLDVQTAQMEDSMSSTTTLTTPQGQVDTLMMEMADEAGLDLNMELPQGQTGSVG--TSVASAEQDELSQRLAKLR 196
[Close]
BLAST of Charged multivesicular body protein 1b vs. Ensembl Zebrafish
Match: chmp1b (chromatin modifying protein 1B [Source:NCBI gene;Acc:336426])

HSP 1 Score: 228.409 bits (581), Expect = 1.856e-75
Identity = 134/195 (68.72%), Postives = 169/195 (86.67%), Query Frame = 3 
Query:   84 MDKHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQALNYRRMSSRIDAVSARVQTALTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFENLDVQSQVMENTMCNXXXXXXPQNQVESLMHEVADEAGIELNMQLPAGQNTAVGGASSQAAQEQDELTQRLAKLR 668
            M+KHLFNLKFAAK+L+RN+KKC+K EK EK K+K AIQKGNME A+IHAENAIRQKNQ++N+ RMS+R+DAV+ARVQTA+TM  VT SMAGVVK M++ +KSMNLEK+S LM++FE+ FE LDVQ+  ME++M +TTTLTTPQ QV++LM E+ADEAG++LNM+LP GQ  +VG  +S A+ EQDEL+QRLAKLR
Sbjct:    4 MEKHLFNLKFAAKELQRNSKKCDKEEKAEKVKVKKAIQKGNMEVARIHAENAIRQKNQSVNFLRMSARVDAVAARVQTAVTMNQVTKSMAGVVKGMDATLKSMNLEKISGLMEKFERQFETLDVQTAQMEDSMSSTTTLTTPQGQVDTLMMEMADEAGLDLNMELPQGQTGSVG--TSVASAEQDELSQRLAKLR 196
[Close]
BLAST of Charged multivesicular body protein 1b vs. Ensembl Zebrafish
Match: chmp1a (charged multivesicular body protein 1A [Source:NCBI gene;Acc:393535])

HSP 1 Score: 173.326 bits (438), Expect = 6.673e-54
Identity = 100/194 (51.55%), Postives = 150/194 (77.32%), Query Frame = 3 
Query:   96 LFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQALNYRRMSSRIDAVSARVQTALTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFENLDVQSQVMENTMCNXXXXXXPQNQVESLMHEVADEAGIELN---MQLPAGQNTAVGGASSQAAQEQDELTQRLAKLR 668
            LF LKF +K LER AKK EK  K E+ K+K A+Q+ N+E A+++AENAIR+KN+ LN+ RM+SR+DAV+++VQTALTMK V  +M  V K+++ A+ SM+L+KVS +MD+FE   +NLDV + VME++M + TTL+TPQ QV+ L+ ++A+E+G+E+     QLPAG  +A+G  S++A +++D+L++RLA LR
Sbjct:    5 LFQLKFTSKQLERLAKKAEKDSKSEQAKVKKALQQKNVECARVYAENAIRKKNEGLNWLRMASRVDAVASKVQTALTMKGVAKNMTQVTKALDKALSSMDLQKVSAVMDKFETQVQNLDVHTSVMEDSMSSATTLSTPQQQVDDLILQIAEESGLEVEDQLSQLPAG-ASALGETSARAQEKEDQLSRRLAALR 197
[Close]
BLAST of Charged multivesicular body protein 1b vs. Ensembl Zebrafish
Match: chmp1a (charged multivesicular body protein 1A [Source:NCBI gene;Acc:393535])

HSP 1 Score: 123.635 bits (309), Expect = 2.412e-35
Identity = 66/134 (49.25%), Postives = 104/134 (77.61%), Query Frame = 3 
Query:  276 MSSRIDAVSARVQTALTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFENLDVQSQVMENTMCNXXXXXXPQNQVESLMHEVADEAGIELN---MQLPAGQNTAVGGASSQAAQEQDELTQRLAKLR 668
            M+SR+DAV+++VQTALTMK V  +M  V K+++ A+ SM+L+KVS +MD+FE   +NLDV + VME++M + TTL+TPQ QV+ L+ ++A+E+G+E+     QLPAG  +A+G  S++A +++D+L++RLA LR
Sbjct:    1 MASRVDAVASKVQTALTMKGVAKNMTQVTKALDKALSSMDLQKVSAVMDKFETQVQNLDVHTSVMEDSMSSATTLSTPQQQVDDLILQIAEESGLEVEDQLSQLPAG-ASALGETSARAQEKEDQLSRRLAALR 133
[Close]
BLAST of Charged multivesicular body protein 1b vs. Ensembl Zebrafish
Match: chmp2a (charged multivesicular body protein 2A [Source:NCBI gene;Acc:798901])

HSP 1 Score: 56.225 bits (134), Expect = 4.416e-9
Identity = 39/155 (25.16%), Postives = 85/155 (54.84%), Query Frame = 3 
Query:  195 QKGNMEGAQIHAENAIRQKNQALNYRRMSSRIDAVSARVQTALTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFENLDVQSQVMENTMCNXXXXXXPQNQVESLMHEVADEAGIELNMQLPAGQNTAVGGASSQAAQEQDELTQRLA 659
            ++G M+  +I A++ +R +     +  M + I AVS ++QT  +  ++  +M GV K+M +  + + L ++ ++M  FE+  E +D++ ++M + + +       + + ++++ +V DE G+ L+ +L      A GG+ S AA ++ E    LA
Sbjct:   52 KQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLPQIQKIMMEFERQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLSDEL--SNLPATGGSLSVAAGKKAEPQPTLA 204
[Close]
BLAST of Charged multivesicular body protein 1b vs. Ensembl Xenopus
Match: chmp1b (charged multivesicular body protein 1B [Source:NCBI gene;Acc:448582])

HSP 1 Score: 232.261 bits (591), Expect = 6.988e-77
Identity = 139/195 (71.28%), Postives = 169/195 (86.67%), Query Frame = 3 
Query:   84 MDKHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQALNYRRMSSRIDAVSARVQTALTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFENLDVQSQVMENTMCNXXXXXXPQNQVESLMHEVADEAGIELNMQLPAGQNTAVGGASSQAAQEQDELTQRLAKLR 668
            M+K+LFNLKFAAK+L RNAKKCEK EK EK K+K AIQKGN E A+IHAENAIRQKNQ +N+ RMS+R+DAV+ARVQTA+TM  VT SMAGVVKSM++ +KSMNLEK+S LMD+FE  FE LDVQ+Q ME+TM NTTTLTTPQNQV++L+HE+ADEAG++LNM+LP GQ  +VG  +S A+ EQDEL+QRLA+LR
Sbjct:    4 MEKNLFNLKFAAKELHRNAKKCEKEEKTEKAKIKKAIQKGNTEIARIHAENAIRQKNQGINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDTTLKSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSNTTTLTTPQNQVDNLLHEMADEAGLDLNMELPQGQTGSVG--TSVASTEQDELSQRLARLR 196
[Close]
BLAST of Charged multivesicular body protein 1b vs. Ensembl Xenopus
Match: chmp1b (charged multivesicular body protein 1B [Source:NCBI gene;Acc:448582])

HSP 1 Score: 211.46 bits (537), Expect = 2.043e-68
Identity = 127/184 (69.02%), Postives = 156/184 (84.78%), Query Frame = 3 
Query:   90 KHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQALNYRRMSSRIDAVSARVQTALTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFENLDVQSQVMENTMCNXXXXXXPQNQVESLMHEVADEAGIELNMQLPAGQNTAVGGASSQAAQEQDE 641
            ++LFNLKFAAK+L RNAKKCEK EK EK K+K AIQKGN E A+IHAENAIRQKNQ +N+ RMS+R+DAV+ARVQTA+TM  VT SMAGVVKSM++ +KSMNLEK+S LMD+FE  FE LDVQ+Q ME+TM NTTTLTTPQNQV++L+HE+ADEAG++LNM+LP GQ  +VG + +   Q +DE
Sbjct:    6 ENLFNLKFAAKELHRNAKKCEKEEKTEKAKIKKAIQKGNTEIARIHAENAIRQKNQGINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDTTLKSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSNTTTLTTPQNQVDNLLHEMADEAGLDLNMELPQGQTGSVGTSVASTEQVKDE 189
[Close]
BLAST of Charged multivesicular body protein 1b vs. Ensembl Xenopus
Match: scube2 (signal peptide, CUB domain, EGF-like 2 [Source:Xenbase;Acc:XB-GENE-5945055])

HSP 1 Score: 166.392 bits (420), Expect = 5.431e-51
Identity = 100/199 (50.25%), Postives = 151/199 (75.88%), Query Frame = 3 
Query:   84 MDKHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQALNYRRMSSRIDAVSARVQTALTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFENLDVQSQVMENTMCNXXXXXXPQNQVESLMHEVADEAGIE----LNMQLPAGQNTAVGGASSQAAQEQDELTQRLAKLR 668
            MD  LF LKF +K LE+ AKK EK    E+ K+K A+Q+ N+E A+++AENAIR+KN+ LN+ RM+SR+DAV+++VQTA+TMK VT +MA V K+++ A+ SM+L+KVS +MD+F++  +NLDV + VME++M +  TLTTPQ QV++L+ ++A+E G+E    LN QLP G  ++VG +S++    +D+L++RLA LR
Sbjct:    1 MDDTLFQLKFTSKQLEKLAKKAEKDSNTEQAKVKKALQQKNVEVARVYAENAIRKKNEGLNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSSMDLQKVSAVMDKFDQQVQNLDVHTSVMEDSMSSAMTLTTPQEQVDNLIVQIAEENGLEVMDQLN-QLPQGA-SSVGESSTRTP--EDQLSRRLAALR 195
[Close]
BLAST of Charged multivesicular body protein 1b vs. Ensembl Xenopus
Match: scube2 (signal peptide, CUB domain, EGF-like 2 [Source:Xenbase;Acc:XB-GENE-5945055])

HSP 1 Score: 144.05 bits (362), Expect = 1.942e-42
Identity = 78/159 (49.06%), Postives = 125/159 (78.62%), Query Frame = 3 
Query:  189 AIQKGNMEGAQIHAENAIRQKNQALNYRRMSSRIDAVSARVQTALTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFENLDVQSQVMENTMCNXXXXXXPQNQVESLMHEVADEAGIE----LNMQLPAGQNTAVGGASSQAAQEQDELTQR 653
            A+Q+ N+E A+++AENAIR+KN+ LN+ RM+SR+DAV+++VQTA+TMK VT +MA V K+++ A+ SM+L+KVS +MD+F++  +NLDV + VME++M +  TLTTPQ QV++L+ ++A+E G+E    LN QLP G  ++VG +S++    +D+L++R
Sbjct:   31 ALQQKNVEVARVYAENAIRKKNEGLNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSSMDLQKVSAVMDKFDQQVQNLDVHTSVMEDSMSSAMTLTTPQEQVDNLIVQIAEENGLEVMDQLN-QLPQGA-SSVGESSTRTP--EDQLSRR 185
[Close]
BLAST of Charged multivesicular body protein 1b vs. Ensembl Xenopus
Match: nelfa (negative elongation factor complex member A [Source:Xenbase;Acc:XB-GENE-988837])

HSP 1 Score: 54.6842 bits (130), Expect = 1.635e-8
Identity = 36/143 (25.17%), Postives = 80/143 (55.94%), Query Frame = 3 
Query:  195 QKGNMEGAQIHAENAIRQKNQALNYRRMSSRIDAVSARVQTALTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFENLDVQSQVMENTMCNXXXXXXPQNQVESLMHEVADEAGIELNMQ---LPA-GQNTAVGGA 611
            ++G M+  +I A++ +R +     +  M + I AVS ++QT  +  ++  +M GV K+M +  + + L ++ ++M  FEK  E +D++ ++M + + +       + + ++++ +V DE G+ L  +   LP+ G + +V GA
Sbjct:   52 KQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLPQIQKIMMEFEKQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLTDELSNLPSTGGSLSVAGA 194
[Close]
BLAST of Charged multivesicular body protein 1b vs. Ensembl Mouse
Match: 2610002M06Rik (RIKEN cDNA 2610002M06 gene [Source:MGI Symbol;Acc:MGI:1914278])

HSP 1 Score: 223.787 bits (569), Expect = 1.159e-73
Identity = 137/195 (70.26%), Postives = 168/195 (86.15%), Query Frame = 3 
Query:   84 MDKHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQALNYRRMSSRIDAVSARVQTALTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFENLDVQSQVMENTMCNXXXXXXPQNQVESLMHEVADEAGIELNMQLPAGQNTAVGGASSQAAQEQDELTQRLAKLR 668
            M+KHLFNLKFAAK+L RNAKKC+K EK EK K+K AIQKGN E A+IHAENAIRQKNQA+N+ RMS+R+DAV+ARVQTA+TM  VT SMAGVVKSM++ ++SMNLEK+S LMD+FE  FE LDVQ+Q ME+TM +TTTLTTPQNQV+ L+ E+ADEAG++LNM+LP GQ  +VG  +S A+ EQDEL+QRLA+LR
Sbjct:    4 MEKHLFNLKFAAKELNRNAKKCDKEEKAEKAKIKKAIQKGNTEVARIHAENAIRQKNQAINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLRSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVG--ASVASTEQDELSQRLARLR 196
[Close]
BLAST of Charged multivesicular body protein 1b vs. Ensembl Mouse
Match: Chmp1b (charged multivesicular body protein 1B [Source:MGI Symbol;Acc:MGI:1914314])

HSP 1 Score: 222.246 bits (565), Expect = 4.786e-73
Identity = 136/195 (69.74%), Postives = 168/195 (86.15%), Query Frame = 3 
Query:   84 MDKHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQALNYRRMSSRIDAVSARVQTALTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFENLDVQSQVMENTMCNXXXXXXPQNQVESLMHEVADEAGIELNMQLPAGQNTAVGGASSQAAQEQDELTQRLAKLR 668
            M+KHLFNLKFAAK+L R++KKC+K EK EK K+K AIQKGNME A+IHAENAIRQKNQ +N+ RMS+R+DAV+ARVQTA+TM  VT SMAGVVKSM++ +KSMNLEK+S LMD+FE  FE LDVQ+Q ME+TM +TTTLTTPQNQV+ L+ E+ADEAG++LNM+LP GQ  +VG  +S A+ EQDEL+QRLA+LR
Sbjct:    4 MEKHLFNLKFAAKELNRSSKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQGVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVG--TSVASAEQDELSQRLARLR 196
[Close]
BLAST of Charged multivesicular body protein 1b vs. Ensembl Mouse
Match: Chmp1a (charged multivesicular body protein 1A [Source:MGI Symbol;Acc:MGI:1920159])

HSP 1 Score: 169.088 bits (427), Expect = 4.043e-52
Identity = 102/198 (51.52%), Postives = 153/198 (77.27%), Query Frame = 3 
Query:   84 MDKHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQALNYRRMSSRIDAVSARVQTALTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFENLDVQSQVMENTMCNXXXXXXPQNQVESLMHEVADEAGIEL---NMQLPAGQNTAVGGASSQAAQEQDELTQRLAKLR 668
            MD  LF LKF AK LE+ AKK EK  K E+ K+K A+Q+ N+E A+++AENAIR+KN+ +N+ RM+SR+DAV+++VQTA+TMK VT +MA V K+++ A+ +M+L+KVS +MDRFE+  +NLDV + VME+++ + TTLTTPQ QV+SL+ ++A+E G+E+     QLP G  +AVG +S ++  ++D+L++RLA LR
Sbjct:    1 MDDTLFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALQQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSAMDLQKVSAVMDRFEQQVQNLDVHTSVMEDSVSSATTLTTPQEQVDSLIVQIAEENGLEVLDQLSQLPEG-ASAVGESSVRS--QEDQLSRRLAALR 195
[Close]
BLAST of Charged multivesicular body protein 1b vs. Ensembl Mouse
Match: Chmp2a (charged multivesicular body protein 2A [Source:MGI Symbol;Acc:MGI:1916203])

HSP 1 Score: 54.6842 bits (130), Expect = 1.532e-8
Identity = 36/144 (25.00%), Postives = 80/144 (55.56%), Query Frame = 3 
Query:  195 QKGNMEGAQIHAENAIRQKNQALNYRRMSSRIDAVSARVQTALTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFENLDVQSQVMENTMCNXXXXXXPQNQVESLMHEVADEAGIELNMQLPAGQNTAVGGASSQAA 626
            ++G M+  +I A++ +R +     +  M + I AVS ++QT  +  ++  +M GV K+M +  + + L ++ ++M  FE+  E +D++ ++M + + +       + + ++++ +V DE G+ L  +L    +T  GG+ S AA
Sbjct:   52 KQGQMDAVRIMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELSNLPST--GGSLSVAA 193
[Close]
BLAST of Charged multivesicular body protein 1b vs. Ensembl Mouse
Match: Chmp2a (charged multivesicular body protein 2A [Source:MGI Symbol;Acc:MGI:1916203])

HSP 1 Score: 54.6842 bits (130), Expect = 1.532e-8
Identity = 36/144 (25.00%), Postives = 80/144 (55.56%), Query Frame = 3 
Query:  195 QKGNMEGAQIHAENAIRQKNQALNYRRMSSRIDAVSARVQTALTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFENLDVQSQVMENTMCNXXXXXXPQNQVESLMHEVADEAGIELNMQLPAGQNTAVGGASSQAA 626
            ++G M+  +I A++ +R +     +  M + I AVS ++QT  +  ++  +M GV K+M +  + + L ++ ++M  FE+  E +D++ ++M + + +       + + ++++ +V DE G+ L  +L    +T  GG+ S AA
Sbjct:   52 KQGQMDAVRIMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELSNLPST--GGSLSVAA 193
[Close]
BLAST of Charged multivesicular body protein 1b vs. UniProt/SwissProt
Match: sp|Q5ZKX1|CHM1B_CHICK (Charged multivesicular body protein 1b OS=Gallus gallus OX=9031 GN=CHMP1B PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.705e-77
Identity = 139/195 (71.28%), Postives = 169/195 (86.67%), Query Frame = 3 
Query:   84 MDKHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQALNYRRMSSRIDAVSARVQTALTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFENLDVQSQVMENTMCNXXXXXXPQNQVESLMHEVADEAGIELNMQLPAGQNTAVGGASSQAAQEQDELTQRLAKLR 668
            M+KHLFNLKFAAK+L RN+K+C+K EK EK K+K AIQKGNME A+IHAENAIRQKNQA+N+ RMS+R+DAV+ARVQTA+TM  VT SMAGVVKSM++ +KSMNLEK+S LMD+FE  FE LDVQ+Q MENTM NTTTLTTPQNQV+ L+ E+ADEAG++LNM+LP GQ  +VG  +S A+ EQDEL+QRLA+LR
Sbjct:    4 MEKHLFNLKFAAKELNRNSKRCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQFETLDVQTQQMENTMSNTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVG--TSVASAEQDELSQRLARLR 196
[Close]
BLAST of Charged multivesicular body protein 1b vs. UniProt/SwissProt
Match: sp|Q7SZB5|CHM1B_XENLA (Charged multivesicular body protein 1b OS=Xenopus laevis OX=8355 GN=chmp1b PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 2.611e-76
Identity = 139/195 (71.28%), Postives = 169/195 (86.67%), Query Frame = 3 
Query:   84 MDKHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQALNYRRMSSRIDAVSARVQTALTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFENLDVQSQVMENTMCNXXXXXXPQNQVESLMHEVADEAGIELNMQLPAGQNTAVGGASSQAAQEQDELTQRLAKLR 668
            M+KHLFNLKFAAK+L RNAKKCEK EK EK K+K AIQKGN E A+IHAENAIRQKNQ +N+ RMS+R+DAV+ARVQTA+TM  VT SMAGVVKSM++ +KSMNLEK+S LMD+FE  FE LDVQ+Q ME+TM NTTTLTTPQNQV++L+HE+ADEAG++L+M+LP GQ  +VG  +S A+ EQDEL+QRLA+LR
Sbjct:    4 MEKHLFNLKFAAKELNRNAKKCEKEEKTEKAKIKKAIQKGNTEIARIHAENAIRQKNQGINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSNTTTLTTPQNQVDNLLHEMADEAGLDLSMELPQGQTGSVG--TSVASTEQDELSQRLARLR 196
[Close]
BLAST of Charged multivesicular body protein 1b vs. UniProt/SwissProt
Match: sp|Q6DF27|CHM1B_XENTR (Charged multivesicular body protein 1b OS=Xenopus tropicalis OX=8364 GN=chmp1b PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 3.702e-76
Identity = 139/195 (71.28%), Postives = 169/195 (86.67%), Query Frame = 3 
Query:   84 MDKHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQALNYRRMSSRIDAVSARVQTALTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFENLDVQSQVMENTMCNXXXXXXPQNQVESLMHEVADEAGIELNMQLPAGQNTAVGGASSQAAQEQDELTQRLAKLR 668
            M+K+LFNLKFAAK+L RNAKKCEK EK EK K+K AIQKGN E A+IHAENAIRQKNQ +N+ RMS+R+DAV+ARVQTA+TM  VT SMAGVVKSM++ +KSMNLEK+S LMD+FE  FE LDVQ+Q ME+TM NTTTLTTPQNQV++L+HE+ADEAG++LNM+LP GQ  +VG  +S A+ EQDEL+QRLA+LR
Sbjct:    4 MEKNLFNLKFAAKELHRNAKKCEKEEKTEKAKIKKAIQKGNTEIARIHAENAIRQKNQGINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDTTLKSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSNTTTLTTPQNQVDNLLHEMADEAGLDLNMELPQGQTGSVG--TSVASTEQDELSQRLARLR 196
[Close]
BLAST of Charged multivesicular body protein 1b vs. UniProt/SwissProt
Match: sp|Q7ZVB1|CHM1B_DANRE (Charged multivesicular body protein 1b OS=Danio rerio OX=7955 GN=chmp1b PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 1.401e-74
Identity = 134/195 (68.72%), Postives = 169/195 (86.67%), Query Frame = 3 
Query:   84 MDKHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQALNYRRMSSRIDAVSARVQTALTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFENLDVQSQVMENTMCNXXXXXXPQNQVESLMHEVADEAGIELNMQLPAGQNTAVGGASSQAAQEQDELTQRLAKLR 668
            M+KHLFNLKFAAK+L+RN+KKC+K EK EK K+K AIQKGNME A+IHAENAIRQKNQ++N+ RMS+R+DAV+ARVQTA+TM  VT SMAGVVK M++ +KSMNLEK+S LM++FE+ FE LDVQ+  ME++M +TTTLTTPQ QV++LM E+ADEAG++LNM+LP GQ  +VG  +S A+ EQDEL+QRLAKLR
Sbjct:    4 MEKHLFNLKFAAKELQRNSKKCDKEEKAEKVKVKKAIQKGNMEVARIHAENAIRQKNQSVNFLRMSARVDAVAARVQTAVTMNQVTKSMAGVVKGMDATLKSMNLEKISGLMEKFERQFETLDVQTAQMEDSMSSTTTLTTPQGQVDTLMMEMADEAGLDLNMELPQGQTGSVG--TSVASAEQDELSQRLAKLR 196
[Close]
BLAST of Charged multivesicular body protein 1b vs. UniProt/SwissProt
Match: sp|Q7LBR1|CHM1B_HUMAN (Charged multivesicular body protein 1b OS=Homo sapiens OX=9606 GN=CHMP1B PE=1 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.215e-73
Identity = 137/195 (70.26%), Postives = 169/195 (86.67%), Query Frame = 3 
Query:   84 MDKHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQALNYRRMSSRIDAVSARVQTALTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFENLDVQSQVMENTMCNXXXXXXPQNQVESLMHEVADEAGIELNMQLPAGQNTAVGGASSQAAQEQDELTQRLAKLR 668
            M+KHLFNLKFAAK+L R+AKKC+K EK EK K+K AIQKGNME A+IHAENAIRQKNQA+N+ RMS+R+DAV+ARVQTA+TM  VT SMAGVVKSM++ +K+MNLEK+S LMD+FE  FE LDVQ+Q ME+TM +TTTLTTPQNQV+ L+ E+ADEAG++LNM+LP GQ  +VG  +S A+ EQDEL+QRLA+LR
Sbjct:    4 MEKHLFNLKFAAKELSRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVG--TSVASAEQDELSQRLARLR 196
[Close]
BLAST of Charged multivesicular body protein 1b vs. TrEMBL
Match: V4A3U2 (Uncharacterized protein OS=Lottia gigantea OX=225164 GN=LOTGIDRAFT_239016 PE=4 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 5.801e-98
Identity = 165/197 (83.76%), Postives = 180/197 (91.37%), Query Frame = 3 
Query:   84 MDKHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQALNYRRMSSRIDAVSARVQTALTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFENLDVQSQVMENTMCNXXXXXXPQNQVESLMHEVADEAGIELNMQLPAGQNTAVGGASS-QAAQEQDELTQRLAKLRQ 671
            MDKHLFNL+FAAKDLERNAKK EKSEK+EK+KLK AI KGNMEGA+IHAENAIRQKNQALNYRRM +RIDAV+ RVQTALT K VT SMAGVVKSMESAMKSMNLEKVSQLMDRFE+ FENLDVQSQVME+TMCNT+TLTTPQNQV+SLM EVADEAG+ELNM LP  Q + +G ASS QA+QEQDEL+QRLAKLRQ
Sbjct:    1 MDKHLFNLRFAAKDLERNAKKSEKSEKDEKNKLKKAIAKGNMEGAKIHAENAIRQKNQALNYRRMGARIDAVAQRVQTALTTKQVTQSMAGVVKSMESAMKSMNLEKVSQLMDRFEQQFENLDVQSQVMESTMCNTSTLTTPQNQVDSLMQEVADEAGLELNMDLPQAQGSTIGTASSAQASQEQDELSQRLAKLRQ 197
[Close]
BLAST of Charged multivesicular body protein 1b vs. TrEMBL
Match: A0A2C9JSI2 (Uncharacterized protein OS=Biomphalaria glabrata OX=6526 GN=106066331 PE=4 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 3.149e-96
Identity = 159/197 (80.71%), Postives = 180/197 (91.37%), Query Frame = 3 
Query:   84 MDKHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQALNYRRMSSRIDAVSARVQTALTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFENLDVQSQVMENTMCNXXXXXXPQNQVESLMHEVADEAGIELNMQLPAGQNTAVGG-ASSQAAQEQDELTQRLAKLRQ 671
            MDKHLFNLKFAAKDLER AK+ EK+EK+EK KLK AIQKGN+EGA+IHAEN+IRQKNQALNYRRMS+RIDAVSARVQTALT + VT SMAGVVKSME+AMKSMNLEKVSQLMDRFE+ FENLDVQSQVMENTM N++TLTTPQNQV++LM EVADEAG+ELNM LP+ Q +A+G   S+QA+ EQDEL+QRLAKLRQ
Sbjct:    1 MDKHLFNLKFAAKDLERQAKRSEKAEKDEKLKLKKAIQKGNIEGAKIHAENSIRQKNQALNYRRMSARIDAVSARVQTALTTRQVTNSMAGVVKSMEAAMKSMNLEKVSQLMDRFEQQFENLDVQSQVMENTMMNSSTLTTPQNQVDALMQEVADEAGLELNMDLPSAQGSAIGATGSTQASAEQDELSQRLAKLRQ 197
[Close]
BLAST of Charged multivesicular body protein 1b vs. TrEMBL
Match: A0A0B7AHK1 (Uncharacterized protein OS=Arion vulgaris OX=1028688 GN=ORF115176 PE=4 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 2.659e-95
Identity = 162/197 (82.23%), Postives = 182/197 (92.39%), Query Frame = 3 
Query:   84 MDKHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQALNYRRMSSRIDAVSARVQTALTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFENLDVQSQVMENTMCNXXXXXXPQNQVESLMHEVADEAGIELNMQLPAGQNTAVGG-ASSQAAQEQDELTQRLAKLRQ 671
            M+K+LFNLKFAAKDLER AKK EKSEKEEK KLK AIQKGN+EGA+IHAEN+IRQKNQALNYRRMS+RIDAV+ARVQTA+T + VT SMAGVVKSMESAMKSMNLEKVSQLMDRFE+ FENLDVQSQVMENTM N++TLTTPQNQV+SLM EVADEAG+ELN+ LP+ Q +AVG  AS+QA+QEQDEL+QRLAKLRQ
Sbjct:    1 MEKNLFNLKFAAKDLERQAKKSEKSEKEEKVKLKRAIQKGNLEGAKIHAENSIRQKNQALNYRRMSARIDAVAARVQTAVTTRQVTNSMAGVVKSMESAMKSMNLEKVSQLMDRFEQQFENLDVQSQVMENTMMNSSTLTTPQNQVDSLMQEVADEAGLELNLDLPSAQGSAVGASASTQASQEQDELSQRLAKLRQ 197
[Close]
BLAST of Charged multivesicular body protein 1b vs. TrEMBL
Match: A0A433SIY0 (Uncharacterized protein OS=Elysia chlorotica OX=188477 GN=EGW08_023356 PE=4 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 2.848e-95
Identity = 162/197 (82.23%), Postives = 180/197 (91.37%), Query Frame = 3 
Query:   84 MDKHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQALNYRRMSSRIDAVSARVQTALTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFENLDVQSQVMENTMCNXXXXXXPQNQVESLMHEVADEAGIELNMQLPAGQNTAVGG-ASSQAAQEQDELTQRLAKLRQ 671
            M+K LFNLKFAAKDLERNAKK EKSEKEEK KLK AIQKGNMEGA+IHAENAIRQKNQALNYRRMS+R+DAV++RVQTA+TMK VT SM+GVVKSMESAMKSMNLEKVSQLMDRFE  FENLDVQS VMENTM N++TLTTPQ+QV+SLM EVADEAG+ELNM LP  Q +A+G  AS+QA+QEQDEL+QRLAKLRQ
Sbjct:    3 MEKCLFNLKFAAKDLERNAKKSEKSEKEEKVKLKKAIQKGNMEGAKIHAENAIRQKNQALNYRRMSARVDAVASRVQTAVTMKQVTTSMSGVVKSMESAMKSMNLEKVSQLMDRFESQFENLDVQSSVMENTMMNSSTLTTPQSQVDSLMQEVADEAGLELNMDLPQAQGSAIGATASTQASQEQDELSQRLAKLRQ 199
[Close]
BLAST of Charged multivesicular body protein 1b vs. TrEMBL
Match: A0A0B6ZWC8 (Uncharacterized protein OS=Arion vulgaris OX=1028688 GN=ORF81222 PE=4 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 4.516e-95
Identity = 156/197 (79.19%), Postives = 183/197 (92.89%), Query Frame = 3 
Query:   84 MDKHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQALNYRRMSSRIDAVSARVQTALTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFENLDVQSQVMENTMCNXXXXXXPQNQVESLMHEVADEAGIELNMQLPAGQNTAVGG-ASSQAAQEQDELTQRLAKLRQ 671
            M+K+LFNLKFAAKDLER AKK EK+EK+EK KLK AIQKGN+EGA+IHAEN+IRQKNQALNYR+MS+RIDAV++RVQTA+TM+ VT SMAGVVKSMESAMKSMNLEK+SQLMDRFE+ FENLDVQSQVMENTM N++TLTTPQNQV++LM E+ADEAG+ELN+ LP+ Q T+VG  ASSQA+QEQDEL+QRL+KLRQ
Sbjct:    4 MEKNLFNLKFAAKDLERQAKKSEKAEKDEKLKLKKAIQKGNLEGAKIHAENSIRQKNQALNYRKMSARIDAVASRVQTAVTMRQVTNSMAGVVKSMESAMKSMNLEKISQLMDRFEQQFENLDVQSQVMENTMMNSSTLTTPQNQVDALMQEIADEAGLELNLNLPSAQGTSVGATASSQASQEQDELSQRLSKLRQ 200
[Close]
BLAST of Charged multivesicular body protein 1b vs. Ensembl Cavefish
Match: ENSAMXT00000038080.1 (charged multivesicular body protein 1b [Source:NCBI gene;Acc:103041461])

HSP 1 Score: 236.498 bits (602), Expect = 1.109e-78
Identity = 136/195 (69.74%), Postives = 167/195 (85.64%), Query Frame = 3 
Query:   84 MDKHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQALNYRRMSSRIDAVSARVQTALTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFENLDVQSQVMENTMCNXXXXXXPQNQVESLMHEVADEAGIELNMQLPAGQNTAVGGASSQAAQEQDELTQRLAKLR 668
            M+KHLFNLKFAAK+LERNAKKC+K EK EK K+K AIQKGN E A+IHAENAIRQKNQ++N+ RMS+R+DAV+ARVQTA+T   VT SM GVVKSM++ +KSMNLEK+S LMD+FE  FE LDVQ+  ME+TM NTTTLTTPQN+VESLMHE+ADEAG++LNM+LP  Q  ++  ++S A+ EQDEL+QRLA+LR
Sbjct:    4 MEKHLFNLKFAAKELERNAKKCDKEEKAEKAKVKKAIQKGNTEVARIHAENAIRQKNQSINFLRMSARVDAVAARVQTAVTTNKVTKSMGGVVKSMDATLKSMNLEKISALMDKFESQFETLDVQTAQMEDTMGNTTTLTTPQNEVESLMHEMADEAGLDLNMELPQEQTGSI--STSVASAEQDELSQRLARLR 196
[Close]
BLAST of Charged multivesicular body protein 1b vs. Ensembl Cavefish
Match: chmp1b (charged multivesicular body protein 1b [Source:NCBI gene;Acc:103027543])

HSP 1 Score: 235.343 bits (599), Expect = 3.413e-78
Identity = 138/195 (70.77%), Postives = 171/195 (87.69%), Query Frame = 3 
Query:   84 MDKHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQALNYRRMSSRIDAVSARVQTALTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFENLDVQSQVMENTMCNXXXXXXPQNQVESLMHEVADEAGIELNMQLPAGQNTAVGGASSQAAQEQDELTQRLAKLR 668
            M++HLFNLKFAAK+L+R++KKC+K EK EK K+K AIQKGNME A+IHAENAIRQKNQ++N+ RMS+R+DAV+ARVQTA+TM  VT SMAGVVK M++ +KSMNLEK+S LMD+FE+ FE LDVQ+Q ME+TM +TTTLTTPQ+QV++LMHE+ADEAG+ELNM+LP GQ   V  ASS A+ EQDEL+QRLAKLR
Sbjct:    4 MEQHLFNLKFAAKELQRSSKKCDKEEKAEKAKVKKAIQKGNMEVARIHAENAIRQKNQSVNFLRMSARVDAVAARVQTAVTMNKVTKSMAGVVKGMDATLKSMNLEKISSLMDKFERQFETLDVQTQQMEDTMSSTTTLTTPQSQVDNLMHEMADEAGLELNMELPQGQTGTV--ASSVASTEQDELSQRLAKLR 196
[Close]
BLAST of Charged multivesicular body protein 1b vs. Ensembl Cavefish
Match: chmp1b (charged multivesicular body protein 1b [Source:NCBI gene;Acc:103027543])

HSP 1 Score: 214.927 bits (546), Expect = 4.722e-70
Identity = 128/184 (69.57%), Postives = 160/184 (86.96%), Query Frame = 3 
Query:   84 MDKHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQALNYRRMSSRIDAVSARVQTALTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFENLDVQSQVMENTMCNXXXXXXPQNQVESLMHEVADEAGIELNMQLPAGQNTAVGGASSQAAQEQ 635
            M++HLFNLKFAAK+L+R++KKC+K EK EK K+K AIQKGNME A+IHAENAIRQKNQ++N+ RMS+R+DAV+ARVQTA+TM  VT SMAGVVK M++ +KSMNLEK+S LMD+FE+ FE LDVQ+Q ME+TM +TTTLTTPQ+QV++LMHE+ADEAG+ELNM+LP GQ   V  ASS A+ EQ
Sbjct:    4 MEQHLFNLKFAAKELQRSSKKCDKEEKAEKAKVKKAIQKGNMEVARIHAENAIRQKNQSVNFLRMSARVDAVAARVQTAVTMNKVTKSMAGVVKGMDATLKSMNLEKISSLMDKFERQFETLDVQTQQMEDTMSSTTTLTTPQSQVDNLMHEMADEAGLELNMELPQGQTGTV--ASSVASTEQ 185
[Close]
BLAST of Charged multivesicular body protein 1b vs. Ensembl Cavefish
Match: chmp1a (charged multivesicular body protein 1A [Source:NCBI gene;Acc:393535])

HSP 1 Score: 170.244 bits (430), Expect = 9.852e-53
Identity = 100/199 (50.25%), Postives = 155/199 (77.89%), Query Frame = 3 
Query:   81 FMDKHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQALNYRRMSSRIDAVSARVQTALTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFENLDVQSQVMENTMCNXXXXXXPQNQVESLMHEVADEAGIELNMQ---LPAGQNTAVGGASSQAAQEQDELTQRLAKLR 668
            F D  LF LKF +K LER AKK EK  K E+ K+K A+Q+ N++ A+++AENAIR+KN+ +N+ RM+SR+DAV+++VQTA+TMK VT +M  V K+++ A+ SM+L+KVS +MD+FE   +NLDV + VME++M + TTLTTPQ QV+ L+ ++A+E+G+E+  Q   LPAG +T++G +S+++ +++D+L++RLA LR
Sbjct:    4 FTD-TLFQLKFTSKQLERLAKKAEKDSKAEQAKVKKALQQKNVDCARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMTQVTKALDKALNSMDLQKVSAVMDKFETQVQNLDVHTSVMEDSMSSATTLTTPQEQVDDLILQIAEESGLEVMDQLNELPAG-STSLGESSARSQEKEDQLSRRLAALR 200
[Close]
BLAST of Charged multivesicular body protein 1b vs. Ensembl Cavefish
Match: chmp2a (charged multivesicular body protein 2A [Source:NCBI gene;Acc:103027439])

HSP 1 Score: 54.6842 bits (130), Expect = 1.040e-8
Identity = 38/155 (24.52%), Postives = 85/155 (54.84%), Query Frame = 3 
Query:  195 QKGNMEGAQIHAENAIRQKNQALNYRRMSSRIDAVSARVQTALTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFENLDVQSQVMENTMCNXXXXXXPQNQVESLMHEVADEAGIELNMQLPAGQNTAVGGASSQAAQEQDELTQRLA 659
            ++G M+  +I A++ +R +     +  M + I AVS ++QT  +  ++  +M GV K+M +  + + L ++ ++M  FE+  E +D++ ++M + + +       + + ++++ +V DE G+ L+ +L    +T  GG+ S  A ++ E    LA
Sbjct:   52 KQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLPQIQKIMMEFERQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDELGLNLSDELSGLPST--GGSLSVPAGKKAEPQPTLA 204
[Close]
BLAST of Charged multivesicular body protein 1b vs. Ensembl Yeast
Match: DID2 (Class E protein of the vacuolar protein-sorting (Vps) pathway; binds Vps4p and directs it to dissociate ESCRT-III complexes; forms a functional and physical complex with Ist1p; human ortholog may be altered in breast tumors [Source:SGD;Acc:S000006435])

HSP 1 Score: 119.783 bits (299), Expect = 6.487e-34
Identity = 77/196 (39.29%), Postives = 125/196 (63.78%), Query Frame = 3 
Query:   84 MDKHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQALNYRRMSSRIDAVSARVQTALTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFENLDVQSQVMENTMCNXXXXXXPQNQVESLMHEVADEAGIELNMQLPAGQNTAVGGASSQAAQE-QDELTQRLAKLR 668
            ++  LF LKF +K L++ A K  K EK+E +KLK A+ + N + ++I+A NAIR+KN+ L   +++SR+D+V++RVQTA+TM+ V+ SM  V K M+ A+++MNL++++ +MD+FE+ FE+LD    V E+   N+  +    ++V+ LM +VADE G+EL           +         E +D+L QRL  LR
Sbjct:    9 LENTLFQLKFTSKQLQKQANKASKEEKQETNKLKRALNE-NEDISRIYASNAIRKKNERLQLLKLASRVDSVASRVQTAVTMRQVSASMGQVCKGMDKALQNMNLQQITMIMDKFEQQFEDLDTSVNVYEDMGVNSDAMLVDNDKVDELMSKVADENGMELKQSAKLDNVPEIKAKEVNVDDEKEDKLAQRLRALR 203
[Close]
BLAST of Charged multivesicular body protein 1b vs. Ensembl Yeast
Match: DID4 (Class E Vps protein of the ESCRT-III complex; required for sorting of integral membrane proteins into lumenal vesicles of multivesicular bodies, and for delivery of newly synthesized vacuolar enzymes to the vacuole, involved in endocytosis [Source:SGD;Acc:S000001485])

HSP 1 Score: 44.2838 bits (103), Expect = 5.117e-6
Identity = 31/139 (22.30%), Postives = 69/139 (49.64%), Query Frame = 3 
Query:  201 GNMEGAQIHAENAIRQKNQALNYRRMSSRIDAVSARVQTALTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFENLDVQSQVMENTMCNXX-XXXXPQNQVESLMHEVADEAGIELNMQLPAGQNTAVGGAS 614
            G +  A++ A++ +R +N    +  M +++ A+S R+Q   +   +T SM+     +    ++MNL ++ ++   FEK  + +  + + M+  + N          + + ++++V DE G++LN QL +     V  A 
Sbjct:   57 GQVAAAKVQAKDLVRTRNYIQKFDNMKAQLQAISLRIQAVRSSDQMTRSMSEATGLLAGMNRTMNLPQLQRISMEFEKQSDLMGQRQEFMDEAIDNVMGDEVDEDEEADEIVNKVLDEIGVDLNSQLQSTPQNLVSNAP 195
[Close]
BLAST of Charged multivesicular body protein 1b vs. Ensembl Nematostella
Match: EDO41077 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S5F7])

HSP 1 Score: 251.136 bits (640), Expect = 6.207e-85
Identity = 145/196 (73.98%), Postives = 168/196 (85.71%), Query Frame = 3 
Query:   84 MDKHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQALNYRRMSSRIDAVSARVQTALTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFENLDVQSQVMENTMCNXXXXXXPQNQVESLMHEVADEAGIELNMQLPAGQNTAVGGASSQAAQEQDELTQRLAKLRQ 671
            M+KHLFNLKFAAK+LERNAKKCEK EK EK KLK AIQKGNMEGA+IH ENAIRQKNQ+LN+ RMSSRIDAV+ RVQTA+TMK VT SM GVVKSM++A+KSMNLEKVS LMD+FEK FE+LDVQS  M+N M +TTTLT PQ QV+SLM +VADEAG+ELN++LP  Q   +G AS+ A+ EQDEL+ RLAKLRQ
Sbjct:    5 MEKHLFNLKFAAKNLERNAKKCEKEEKAEKLKLKKAIQKGNMEGAKIHGENAIRQKNQSLNFMRMSSRIDAVAQRVQTAVTMKQVTSSMGGVVKSMDAALKSMNLEKVSALMDKFEKQFEDLDVQSAAMDNAMSSTTTLTVPQGQVDSLMQQVADEAGLELNLELPGSQQQGIGSASA-ASAEQDELSSRLAKLRQ 199
[Close]
BLAST of Charged multivesicular body protein 1b vs. Ensembl Nematostella
Match: EDO33910 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SQW1])

HSP 1 Score: 135.961 bits (341), Expect = 8.915e-40
Identity = 95/200 (47.50%), Postives = 142/200 (71.00%), Query Frame = 3 
Query:   84 MDKHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQALNYRRMSSRIDAVSARVQTALTMKAVTGSMA---GVVKSMESAMKS-MNLEKVSQLMDRFEKDFENLDVQSQVMENTMCNXXXXXXPQNQVESLMHEVADEAGIELNMQLPAGQ-NTAVGGASSQAAQEQDELTQRLAKLR 668
            ++  LF LKF+ K LER +KKCEK +K ++ K+K A+ + N+EGAQI+AENAIR+KN++LN+ R++SR+DAV++RVQ+A+ MK V   +    GV       + S   L  +S  M++FE  FE+LDV +QVME +M   TTLTTPQ+QVE+L+++VA+E G+E+  QL A Q  TA    S ++ +++D+L++RLA LR
Sbjct:    4 IEDTLFQLKFSTKQLERFSKKCEKEQKVQESKVKKALMQKNVEGAQIYAENAIRKKNESLNFLRLASRLDAVASRVQSAMMMKQVMVELYAYLGVCSDTYLGVCSNTYLGGISATMEKFEGLFEDLDVNTQVMEGSMGAATTLTTPQDQVEALINQVAEENGLEVIKQLDAVQPGTASLRDSERSTEKEDQLSRRLAALR 203
[Close]
BLAST of Charged multivesicular body protein 1b vs. Ensembl Nematostella
Match: EDO43581 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RY62])

HSP 1 Score: 58.9214 bits (141), Expect = 1.375e-10
Identity = 37/135 (27.41%), Postives = 72/135 (53.33%), Query Frame = 3 
Query:  201 GNMEGAQIHAENAIRQKNQALNYRRMSSRIDAVSARVQTALTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFENLDVQSQVMENTMCNXXXXXXPQNQVESLMHEVADEAGIELNMQLPAGQNTAVG 605
            G M+  +I A++ +R +     +  M + I AVS ++QT  +  A+  +M GV K+M +  + + L ++ ++M  FEK  E +D++ ++M + + +         + E L+ +V DE G++L  +L     TA G
Sbjct:   56 GQMDAVRIMAKDLVRTRRYVKKFILMKANIQAVSLKIQTLRSNNAMAQAMKGVTKAMATMNRQLKLPEIQKIMMEFEKQSEIMDMKEEMMNDAIDDVIGDEEDDEESEKLVQQVFDELGLQLTDELSGLPVTASG 190
[Close]
BLAST of Charged multivesicular body protein 1b vs. Ensembl Medaka
Match: chmp1b (charged multivesicular body protein 1B [Source:NCBI gene;Acc:101162390])

HSP 1 Score: 229.565 bits (584), Expect = 5.726e-76
Identity = 136/195 (69.74%), Postives = 169/195 (86.67%), Query Frame = 3 
Query:   84 MDKHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQALNYRRMSSRIDAVSARVQTALTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFENLDVQSQVMENTMCNXXXXXXPQNQVESLMHEVADEAGIELNMQLPAGQNTAVGGASSQAAQEQDELTQRLAKLR 668
            + ++LFNLKFAAK+L+RNAKKC+K EK EK K+K AIQKGNME A+IHAENAIRQKNQ++N+ RMS+R+DAV+ARVQTA+TM  VT SMAGVVK M++ +KSMNLEK+S LMD+FE  FE LDVQ+  ME+TM +TTTLTTPQNQV+SL+HE+ADEAG++LNM+LP GQ  +VG  +S A+ EQDEL+QRLAKLR
Sbjct:    1 ISENLFNLKFAAKELQRNAKKCDKEEKAEKAKVKKAIQKGNMEVARIHAENAIRQKNQSVNFLRMSARVDAVAARVQTAVTMNQVTKSMAGVVKGMDATLKSMNLEKISALMDKFEHQFETLDVQTAQMEDTMSSTTTLTTPQNQVDSLLHEMADEAGLDLNMELPQGQTGSVG--TSVASAEQDELSQRLAKLR 193
[Close]
BLAST of Charged multivesicular body protein 1b vs. Ensembl Medaka
Match: chmp1a (charged multivesicular body protein 1A [Source:NCBI gene;Acc:101169448])

HSP 1 Score: 171.785 bits (434), Expect = 2.623e-53
Identity = 100/199 (50.25%), Postives = 152/199 (76.38%), Query Frame = 3 
Query:   84 MDKHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQALNYRRMSSRIDAVSARVQTALTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFENLDVQSQVMENTMCNXXXXXXPQNQVESLMHEVADEAGIE----LNMQLPAGQNTAVGGASSQAAQEQDELTQRLAKLR 668
            M+  LF L+F +K LER +KK EK  ++E+ K+K A+Q+ N+E A+++AENAIR+KN+ LN+ RM+SR+DAV+++VQTA+TMK V  +M  V K+++ A+ SM+L+KVS +MD+FE   +NLDV + VME++M +  TLTTPQ QV+ L+H++A+E G+E    LN QLPAG  +++GG S+++  ++D LT+RLA LR
Sbjct:    1 MEDTLFQLRFTSKQLERLSKKAEKESEKEQAKVKKALQQKNVECARVYAENAIRKKNEGLNWLRMASRVDAVASKVQTAVTMKGVAKNMGQVTKALDKALNSMDLQKVSAVMDKFETQVQNLDVHTSVMEDSMSSAMTLTTPQEQVDDLIHQIAEEGGLEVMDQLN-QLPAGA-SSLGGESTRSQDKEDLLTRRLAALR 197
[Close]
BLAST of Charged multivesicular body protein 1b vs. Ensembl Medaka
Match: chmp2a (charged multivesicular body protein 2A [Source:NCBI gene;Acc:101157403])

HSP 1 Score: 56.6102 bits (135), Expect = 2.551e-9
Identity = 37/149 (24.83%), Postives = 84/149 (56.38%), Query Frame = 3 
Query:  195 QKGNMEGAQIHAENAIRQKNQALNYRRMSSRIDAVSARVQTALTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFENLDVQSQVMENTMCNXXXXXXPQNQVESLMHEVADEAGIELNMQLPAGQNTAVGGASSQAAQEQDE 641
            ++G M+  +I A++ +R +     +  M + I AVS ++QT  +  ++  +M GV K+M +  + + L ++ ++M  FEK  E +D++ ++M + + +       + + ++++ +V DE G+ L+ +L +  +T  GG+ S A  ++ E
Sbjct:   52 KQGQMDAVKIMAKDLVRTRRYVKKFIMMKANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLPQIQKIMMEFEKQSELMDMKEEMMNDAIDDAMGDEDDEEESDAIVSQVLDELGLNLSDELSSLPST--GGSLSVAGGKKAE 198
[Close]
BLAST of Charged multivesicular body protein 1b vs. Ensembl Medaka
Match: chmp2ba (charged multivesicular body protein 2B [Source:NCBI gene;Acc:101166263])

HSP 1 Score: 46.9802 bits (110), Expect = 4.182e-6
Identity = 39/160 (24.38%), Postives = 83/160 (51.88%), Query Frame = 3 
Query:  201 GNMEGAQIHAENAIRQKNQALNYRRMSSRIDAVSARVQTALTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFENLDVQSQVMENTMCNXXXXXXPQNQVESLMHEVADEAGIELN---MQLPAGQNTAVGGASS--QAAQEQDELTQRLAKL 665
            GN E  +I A+  ++ + Q      +SS++ ++S + +   +   + G+M+   K+M++  K M+ +K  + M  F+K+   + +   ++ +T+      +  + + E ++ +V DE GIE++   ++ PA   +  G ASS  QA    DE+ ++L  L
Sbjct:   53 GNREACKILAKQLVQLRKQKNRTYAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLKTMQDFQKENMKMGMTEDMINDTLDEIFDESGDEEESEDIVSQVLDEIGIEISGKMIKAPAAGKSVPGAASSSKQATISDDEIERQLRAL 212
[Close]
BLAST of Charged multivesicular body protein 1b vs. Planmine SMEST
Match: SMESG000060068.1 (SMESG000060068.1)

HSP 1 Score: 157.532 bits (397), Expect = 1.065e-47
Identity = 94/201 (46.77%), Postives = 144/201 (71.64%), Query Frame = 3 
Query:   84 MDKHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQALNYRRMSSRIDAVSARVQTALTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFENLDVQSQVMENTMCNXXXXXXPQNQVESLMHEVADEAGIEL-----NMQLPAGQNTAVGGASSQAAQEQDELTQRLAKLRQ 671
            +++ LF LKF+ K ++R AKK EK +K E+ K+K A+ + N+EGA+I+AENAIR+KN+ LNY R+SS++DAVS+R+QTA+TMK V   +  V K +E AM SM+LEK+ ++M +FE  FE+LDV++  +EN M N  TL+ P++QV SL+ +VA+E G+E+     +++L  G   +   +S +    +D+LT+RLA LRQ
Sbjct:    9 LEETLFQLKFSGKQIDRFAKKAEKDQKIEQGKVKKALLQKNVEGAKIYAENAIRKKNECLNYMRLSSKLDAVSSRIQTAMTMKQVMHGIQNVTKDLEKAMASMDLEKIDRIMSKFESQFEDLDVRTSTIENAMGNAVTLSAPEDQVNSLIKQVAEENGLEIMNDLSDLKLNEGSVVSGSRSSEREPAREDDLTKRLAALRQ 209
[Close]
BLAST of Charged multivesicular body protein 1b vs. Planmine SMEST
Match: SMESG000005024.1 (SMESG000005024.1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.531e-13
Identity = 50/179 (27.93%), Postives = 95/179 (53.07%), Query Frame = 3 
Query:  195 QKGNMEGAQIHAENAIRQKNQALNYRRMSSRIDAVSARVQTALTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFENLDVQSQVMENTMCNXXXXXXPQNQVESLMHEVADEAGIEL-----------------NMQLPAGQN--TAVGGASSQA-AQEQDELTQRLAKLRQ 671
            ++G M+  +I A++ +R +N    +  M + I AVS ++QT  +  A+  +M GV ++M+   KSMNL ++ ++M  FE++   ++++ ++M +T+ +       + + E L+++V DE GIE+                 N   PA     TA G  S  + A + D+L  RLA+L++
Sbjct:   39 KQGQMDAVKIMAKDLVRTRNYVKKFILMKANIQAVSLKIQTLRSTNAMAQAMKGVTRTMQRMNKSMNLPQLQKIMMEFERESNIMEMKEEMMTDTIDDALGEEGDEEESEKLVNQVLDELGIEIADTLSNIDPSKESIGVRNKNPPAANKAATADGLPSPPSNAGDDDDLEARLARLKR 217
[Close]
BLAST of Charged multivesicular body protein 1b vs. Planmine SMEST
Match: SMESG000005024.1 (SMESG000005024.1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.652e-13
Identity = 50/179 (27.93%), Postives = 95/179 (53.07%), Query Frame = 3 
Query:  195 QKGNMEGAQIHAENAIRQKNQALNYRRMSSRIDAVSARVQTALTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFENLDVQSQVMENTMCNXXXXXXPQNQVESLMHEVADEAGIEL-----------------NMQLPAGQN--TAVGGASSQA-AQEQDELTQRLAKLRQ 671
            ++G M+  +I A++ +R +N    +  M + I AVS ++QT  +  A+  +M GV ++M+   KSMNL ++ ++M  FE++   ++++ ++M +T+ +       + + E L+++V DE GIE+                 N   PA     TA G  S  + A + D+L  RLA+L++
Sbjct:   52 KQGQMDAVKIMAKDLVRTRNYVKKFILMKANIQAVSLKIQTLRSTNAMAQAMKGVTRTMQRMNKSMNLPQLQKIMMEFERESNIMEMKEEMMTDTIDDALGEEGDEEESEKLVNQVLDELGIEIADTLSNIDPSKESIGVRNKNPPAANKAATADGLPSPPSNAGDDDDLEARLARLKR 230
The following BLAST results are available for this feature:
BLAST of Charged multivesicular body protein 1b vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
CHMP1B8.776e-7470.26charged multivesicular body protein 1B [Source:HGN... [more]
CHMP1A9.285e-5251.52charged multivesicular body protein 1A [Source:HGN... [more]
CHMP1A1.528e-4347.98charged multivesicular body protein 1A [Source:HGN... [more]
CHMP1A2.018e-3553.91charged multivesicular body protein 1A [Source:HGN... [more]
CHMP1A1.466e-3350.75charged multivesicular body protein 1A [Source:HGN... [more]
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BLAST of Charged multivesicular body protein 1b vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 3
Match NameE-valueIdentityDescription
did-24.793e-7364.10Doa4-Independent Degradation, homologous to yeast ... [more]
vps-23.592e-1328.26Related to yeast Vacuolar Protein Sorting factor ... [more]
C01A2.41.027e-828.66pep chromosome:WBcel235:I:13392118:13394001:1 gene... [more]
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BLAST of Charged multivesicular body protein 1b vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 3
Match NameE-valueIdentityDescription
Chmp13.757e-8368.37gene:FBgn0036805 transcript:FBtr0345383[more]
Chmp13.757e-8368.37gene:FBgn0036805 transcript:FBtr0075092[more]
Vps22.799e-1226.00gene:FBgn0039402 transcript:FBtr0084967[more]
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BLAST of Charged multivesicular body protein 1b vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
chmp1b1.856e-7568.72chromatin modifying protein 1B [Source:NCBI gene;A... [more]
chmp1b1.856e-7568.72chromatin modifying protein 1B [Source:NCBI gene;A... [more]
chmp1a6.673e-5451.55charged multivesicular body protein 1A [Source:NCB... [more]
chmp1a2.412e-3549.25charged multivesicular body protein 1A [Source:NCB... [more]
chmp2a4.416e-925.16charged multivesicular body protein 2A [Source:NCB... [more]
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BLAST of Charged multivesicular body protein 1b vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
chmp1b6.988e-7771.28charged multivesicular body protein 1B [Source:NCB... [more]
chmp1b2.043e-6869.02charged multivesicular body protein 1B [Source:NCB... [more]
scube25.431e-5150.25signal peptide, CUB domain, EGF-like 2 [Source:Xen... [more]
scube21.942e-4249.06signal peptide, CUB domain, EGF-like 2 [Source:Xen... [more]
nelfa1.635e-825.17negative elongation factor complex member A [Sourc... [more]
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BLAST of Charged multivesicular body protein 1b vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
2610002M06Rik1.159e-7370.26RIKEN cDNA 2610002M06 gene [Source:MGI Symbol;Acc:... [more]
Chmp1b4.786e-7369.74charged multivesicular body protein 1B [Source:MGI... [more]
Chmp1a4.043e-5251.52charged multivesicular body protein 1A [Source:MGI... [more]
Chmp2a1.532e-825.00charged multivesicular body protein 2A [Source:MGI... [more]
Chmp2a1.532e-825.00charged multivesicular body protein 2A [Source:MGI... [more]
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BLAST of Charged multivesicular body protein 1b vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q5ZKX1|CHM1B_CHICK1.705e-7771.28Charged multivesicular body protein 1b OS=Gallus g... [more]
sp|Q7SZB5|CHM1B_XENLA2.611e-7671.28Charged multivesicular body protein 1b OS=Xenopus ... [more]
sp|Q6DF27|CHM1B_XENTR3.702e-7671.28Charged multivesicular body protein 1b OS=Xenopus ... [more]
sp|Q7ZVB1|CHM1B_DANRE1.401e-7468.72Charged multivesicular body protein 1b OS=Danio re... [more]
sp|Q7LBR1|CHM1B_HUMAN4.215e-7370.26Charged multivesicular body protein 1b OS=Homo sap... [more]
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BLAST of Charged multivesicular body protein 1b vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
V4A3U25.801e-9883.76Uncharacterized protein OS=Lottia gigantea OX=2251... [more]
A0A2C9JSI23.149e-9680.71Uncharacterized protein OS=Biomphalaria glabrata O... [more]
A0A0B7AHK12.659e-9582.23Uncharacterized protein OS=Arion vulgaris OX=10286... [more]
A0A433SIY02.848e-9582.23Uncharacterized protein OS=Elysia chlorotica OX=18... [more]
A0A0B6ZWC84.516e-9579.19Uncharacterized protein OS=Arion vulgaris OX=10286... [more]
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BLAST of Charged multivesicular body protein 1b vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ENSAMXT00000038080.11.109e-7869.74charged multivesicular body protein 1b [Source:NCB... [more]
chmp1b3.413e-7870.77charged multivesicular body protein 1b [Source:NCB... [more]
chmp1b4.722e-7069.57charged multivesicular body protein 1b [Source:NCB... [more]
chmp1a9.852e-5350.25charged multivesicular body protein 1A [Source:NCB... [more]
chmp2a1.040e-824.52charged multivesicular body protein 2A [Source:NCB... [more]
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BLAST of Charged multivesicular body protein 1b vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Charged multivesicular body protein 1b vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 2
Match NameE-valueIdentityDescription
DID26.487e-3439.29Class E protein of the vacuolar protein-sorting (V... [more]
DID45.117e-622.30Class E Vps protein of the ESCRT-III complex; requ... [more]
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BLAST of Charged multivesicular body protein 1b vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 3
Match NameE-valueIdentityDescription
EDO410776.207e-8573.98Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO339108.915e-4047.50Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO435811.375e-1027.41Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of Charged multivesicular body protein 1b vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 4
Match NameE-valueIdentityDescription
chmp1b5.726e-7669.74charged multivesicular body protein 1B [Source:NCB... [more]
chmp1a2.623e-5350.25charged multivesicular body protein 1A [Source:NCB... [more]
chmp2a2.551e-924.83charged multivesicular body protein 2A [Source:NCB... [more]
chmp2ba4.182e-624.38charged multivesicular body protein 2B [Source:NCB... [more]
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BLAST of Charged multivesicular body protein 1b vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3
Match NameE-valueIdentityDescription
SMESG000060068.11.065e-4746.77SMESG000060068.1[more]
SMESG000005024.11.531e-1327.93SMESG000005024.1[more]
SMESG000005024.11.652e-1327.93SMESG000005024.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30032593 ID=SMED30032593|Name=Charged multivesicular body protein 1b|organism=Schmidtea mediterranea sexual|type=transcript|length=755bp
CAAATATGTGGTGTTTAAATATGTACTTATATTTATTATTTGGAAATTAT
TATTTAAAAAAAATTGGAAAAATATAAAATTTTATGGATAAACATTTATT
CAATTTAAAATTTGCTGCCAAAGATTTAGAGAGAAATGCGAAAAAATGTG
AAAAATCAGAAAAAGAAGAAAAGCATAAATTAAAATTGGCTATTCAAAAA
GGTAATATGGAAGGTGCTCAAATTCACGCAGAAAATGCTATAAGACAAAA
AAACCAAGCTTTAAATTATCGTCGGATGAGTTCACGCATTGATGCAGTTT
CAGCTAGGGTACAAACTGCATTAACTATGAAAGCAGTCACCGGATCTATG
GCTGGTGTTGTGAAATCTATGGAATCTGCAATGAAATCAATGAATTTAGA
AAAGGTTTCTCAACTTATGGACAGATTTGAAAAAGATTTTGAAAATTTAG
ATGTGCAGTCACAGGTCATGGAAAATACAATGTGTAATACAACAACTCTA
ACAACTCCGCAAAACCAAGTTGAAAGTCTTATGCATGAAGTTGCAGATGA
AGCAGGCATTGAACTTAATATGCAATTACCAGCTGGACAAAATACAGCAG
TTGGAGGTGCTAGTTCACAAGCAGCTCAAGAACAGGACGAGTTAACTCAG
AGATTGGCTAAATTAAGACAAACTTAAATTGGACTTAAAAACATGGATTT
TTATATTAATGAGAATTTATTAATAAATTTATGGTTTTTATTTCACAACG
CAAAA
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protein sequence of SMED30032593-orf-1

>SMED30032593-orf-1 ID=SMED30032593-orf-1|Name=SMED30032593-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=198bp
MDKHLFNLKFAAKDLERNAKKCEKSEKEEKHKLKLAIQKGNMEGAQIHAE
NAIRQKNQALNYRRMSSRIDAVSARVQTALTMKAVTGSMAGVVKSMESAM
KSMNLEKVSQLMDRFEKDFENLDVQSQVMENTMCNTTTLTTPQNQVESLM
HEVADEAGIELNMQLPAGQNTAVGGASSQAAQEQDELTQRLAKLRQT*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000026gut
PLANA:0000034epidermis
PLANA:0000070intestinal phagocyte
PLANA:0002056medial muscle cell
Vocabulary: INTERPRO
TermDefinition
IPR005024Snf7_fam
Vocabulary: biological process
TermDefinition
GO:0007034vacuolar transport
GO:0006810transport
GO:0015031protein transport
Vocabulary: cellular component
TermDefinition
GO:0005737cytoplasm
GO:0005768endosome
GO:0005829cytosol
GO:0016020membrane
GO:0031902late endosome membrane