SMED30032562
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny AppSub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30032562 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 15Note: Hover over icons to view figure legend
Alignments
SMED30032562 aligns in the following genomic locations:
Homology
BLAST of SMED30032562 vs. TrEMBL
Match: G4V7W3 (Putative monocarboxylate transporter OS=Schistosoma mansoni OX=6183 GN=Smp_079640 PE=4 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 3.347e-20 Identity = 113/465 (24.30%), Postives = 195/465 (41.94%), Query Frame = 1 Query: 115 IVCLTISLCVV-LNGKTRCFSVLAAELQNQTCNTIKDTCGMATLNWIAFLSEMIIVGGNPFITNMFIRVH-----SGVLGGKVTFQFCXXXXXXXXXXXFVGDPESLFVTDTLIQGISTSVLLGLVSFKLVHMYPDDNPNHKTVLLLSEIAPWFGVILCPLYGTLVSVYGWQSSYLLISFLIMVICVLAGIIEPKVSATXXXXXXXXXXXXXXXXTEEI--DSQTYFDKSDYWEIEDVGEMECQHPSLLQLLLN------------VNISQVVGKSEVVVWFIERALMIIAEFNLIINLVHYMTSVLLEPILEASMIMITLGAGNIMGFLTIYVLGSKIRKYLPRIYILASVMLVISFIVWQIYGSQTDLILFTVPDAHFVVIV---IGAFSAISTAQSYYVAEDIIERPRIISVSLTKLAQSLGLLIGPISSGMLIQIDFFHSFFSVQAFIHSVRIMLLSFIVY 1440 +V L +L VV + GK R F + A L +T M LNW+ + PF T IR + + VL G + F C+ + V P LF+T TLI G+ ++++L S + + H P+ +I PLY L+ YGWQ ++ L L + + LAG++ + +I +Q + SD +E E+ Q SLL LLN ++ + +V VW ER L + + L++N+ Y++ L + ++ + + + G G + F ++G +IR YL Y++ ++ + ++ Q T D + V ++ GA + Y +E+I+ I+ +TK+ +G+L+ P+ SG +I + FF A + S+R +LL FI Y Sbjct: 38 LVLLVAALNVVCIGGKRRAFGIFVAALHKAYNDT-----SMTELNWVGDSYAAVGFFLMPFATTAIIRWNRPYRCTMVLAGLLIFISCMTSAV-------VPSPGYLFLTHTLIHGLGSTLILCGTSLVTEEYFDRSHRFHVLATAFVSGGPYGVLIFGPLYSNLIQSYGWQVTFQLSGLLFLFVTCLAGVV---------------------FISRDIFEYNQAMLEISDTFE-ENTMNKALQKDSLL--LLNSPKASDGRGWAFCSVEHLKNNPQVFVWGFERLLHNLVIYGLLMNMTAYVSEALNDQLVLGARVNLYFGIGESVVFTLGALIGDRIRGYLAYAYLIGALFAALFLVIMQN----------TYEDLNVVYVLAGFTGATVGVGNTFLYATSEEIMMVHGSIAFPMTKMIAGIGMLLAPLFSGAIIDGFGYGGFFISMAILVSIRAILLGFICY 456
BLAST of SMED30032562 vs. TrEMBL
Match: A0A183REE3 (MFS domain-containing protein OS=Schistosoma rodhaini OX=6188 PE=4 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.455e-19 Identity = 110/464 (23.71%), Postives = 195/464 (42.03%), Query Frame = 1 Query: 115 IVCLTISLCVV-LNGKTRCFSVLAAELQNQTCNTIKDTCGMATLNWIAFLSEMIIVGGNPFITNMFIRVH-----SGVLGGKVTFQFCXXXXXXXXXXXFVGDPESLFVTDTLIQGISTSVLLGLVSFKLVHMYPDDNPNHKTVLLLSEIAPWFGVILCPLYGTLVSVYGWQSSYLLISFLIMVICVLAGIIEPKVSATXXXXXXXXXXXXXXXXTEEI--DSQTYFDKSDYWEIEDVGEMECQHPSLL----------QLLLNVNISQVVGKSEVVVWFIERALMIIAEFNLIINLVHYMTSVLLEPILEASMIMITLGAGNIMGFLTIYVLGSKIRKYLPRIYILASVMLVISFIVWQIYGSQTDLILFTVPDAHFVVIVIGAFSAISTAQS----YYVAEDIIERPRIISVSLTKLAQSLGLLIGPISSGMLIQIDFFHSFFSVQAFIHSVRIMLLSFIVY 1440 +V L +L VV + GK R F + A L +T M LNW+ + PF T IR + + VL G + F C+ + V P LF+T TLI G+ ++++L S + + H P+ +I PLY L+ YGWQ ++ L L +++ LAG++ + +I +Q + SD +E E+ + SLL + ++ + +V VW ER L + + L++N+ Y++ L + ++ + + + G G + F ++G +IR YL Y++ ++ + ++ Q + DL VV V+ F+ + Y +E+I+ I+ +TK+ +G+L+ P+ SG +I + FF A + S+R +LL FI Y Sbjct: 38 LVLLVAALNVVCIGGKRRAFGIFVAALHKAYNDT-----SMTELNWVGDSYAAVGFFLMPFATTAIIRWNRPYRCTMVLAGLLIFISCMTSAV-------VPSPGYLFLTHTLIHGLGSTLILCGTSLVTEEYFDRSHRFHVLATAFVSGGPYGVLIFGPLYSNLIQSYGWQVTFQLSGLLFLLVTCLAGVV---------------------FISRDIFEYNQAMLEISDTFE-ENTMNKALRKDSLLLHNSPKASDGRRWAFCSVEHLKNNPQVFVWGFERLLHNLVIYGLLMNMTAYVSEALNDQLVMGARVNLYFGIGESVVFTLGALIGDRIRGYLAYAYLIGALFAALFLVIMQ--NTYEDLN---------VVYVLAGFTGATVGVGNTFLYATSEEIMMVHGSIAFPMTKMIAGIGMLLAPLFSGAIIDGFGYGGFFISMAILVSIRAILLGFICY 456
BLAST of SMED30032562 vs. TrEMBL
Match: A0A0H3YK65 (Slc16a-3 OS=Schmidtea mediterranea OX=79327 GN=slc16a-3 PE=2 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 1.616e-18 Identity = 109/463 (23.54%), Postives = 197/463 (42.55%), Query Frame = 1 Query: 64 NTPRKIFASLKSLKVISIVCLTISLCVVLNGKTRCFSVLAAELQNQTCNTIKDTCGMATLNWIAFLSEMIIVGGNPFITNMFIRVHS---GVLGGKVTFQFCXXXXXXXXXXXFVGDPESLFVTDTLIQGISTSVLLGLVSFKLVHMYPDDNPNHKTVLLLSEIAPWFGVILCPLYGTLVSVYGWQSSYLLISFLIMVICVLAGIIEPKVSATXXXXXXXXXXXXXXXXTEEIDSQTYFDKSDYWEIEDVGEMECQHPSLLQLLLNVNISQVVGKSEVVVWFIERALMIIAEFNLIINLVHYMTSVL--LEPILEASMIMITLGAGNIMGFLTIYVLGSKIRKYLPRIYILASVMLVISFIVWQIYGSQTDLILFTVPDAHFVVIV----IGAFSAISTAQSYYVAEDIIERPRIISVSLTKLAQSLGLLIGPISSGMLIQIDFFHSFFSVQAFIHSVRIMLL 1425 N +IF ++K L + +V TI++ + + GK R F + + ++ T M LNW+ + PFIT+ R S G+L + FC + FV + LF+T T++ GI ++ +L + + + ++ H L+ P+ +I PLYG +V Y W+ ++ +I+ L V + AGI+ Y K DY + E++ E PSL L+ N ++ +W I+R + L++NL + S+L E + + I + +G G + F V+G KIR LP +++ + ++ I+ + TV + +I +GA + + Y +E+I IS+ L+ + + G++I PI SG+LI + F FS + +R++ L Sbjct: 6 NILLRIF-TIKQLSIFILVVATINI-IFIGGKRRTFGIFISAFRSTFNGT-----SMVELNWVGDSYSAVAFFLMPFITSFVHRNRSYQKGMLAASI-LVFCSCMLTS-----FVTNAAELFITHTVLHGIGSAFILSTSALIIGEYFDKNHRYHVLATSLTTGGPYGSLIFGPLYGFMVQHYDWRFTFRVIAILFFV-EISAGIL------------------------------AYVPKPDYQKSEEIENYEGAFPSLKYLIQN---------KQIFLWGIDRICTSSILYGLLMNLTDLLRSMLNGTENLEGGAKINLMMGVGESIIFTISAVIGDKIRGKLPFFHLIGAAFTLLMLILMK-----------TVSYYPYAIIAFSIFLGAGAGVGNCMLYASSEEITFLHGSISLPLSNMMMAFGMIIAPIFSGLLIDMYGFLGLFSSLIILACIRMLCL 404
BLAST of SMED30032562 vs. TrEMBL
Match: A0A2H1C2Q1 (Monocarboxylate transporter OS=Fasciola hepatica OX=6192 GN=D915_007048 PE=4 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.866e-18 Identity = 102/456 (22.37%), Postives = 181/456 (39.69%), Query Frame = 1 Query: 142 VVLNGKTRCFSVLAAELQNQTCNTIKDTCGMATLNWIA------------FLSEMIIVGGNPFITNMFIRVHSGVLGGKVTFQFCXXXXXXXXXXXFVGDPESLFVTDTLIQGISTSVLLGLVSFKLVHMYPDDNPNHKTVLLLSEIAPWFGVILCPLYGTLVSVYGWQSSYLLISFLIMVICVLAGI-IEPKVSATXXXXXXXXXXXXXXXXTEEIDSQTYFDKSDYWEIEDVGEMECQHPSLLQLLLNVN---------ISQVVGKSEVVVWFIERALMIIAEFNLIINLVHYMTSVLLEPILEASMIMITLGAGNIMGFLTIYVLGSKIRKYLPRIYILASVMLVISFIVWQIYGSQTDLILFTVPDAHFVVIVIG-AFSAISTAQS--YYVAEDIIERPRIISVSLTKLAQSLGLLIGPISSGMLIQIDFFHSFFSVQAFIHSVRIMLLSFI 1434 + + GK R F + A L +T + M LNWI F + +I+ P+ MF L G F C+ V DP LF+T T++ GI ++++L S + + H P+ +I PL+ + YGWQ +++ L +++ L I PK + Q D S+ +I+ G + P LL+ + ++ + +V +W +ER L I + L++NL Y++ L ++ + + + G G + F +G +IR YLP Y++ + + ++ Q T D + V I+ G A+ + Y AE+++ I+ +TK+ +G+LI P SG +I + FF A + +R+ LL+ I Sbjct: 48 ICIGGKRRAFGIFVAAL-----HTAYNETSMTELNWIGDSYASLGFFLMPFATTLIVQTNRPYRFTMF-------LAGVTIFLSCMTSAS-------VPDPSYLFLTHTILHGIGSTLVLCGTSLVTGDYFDKTHRFHVLATTFVSGGPYGVLIFGPLFSHWIQHYGWQQAFIYSGILFLLVTWLGTITFLPKSTVEY--------------------QQAVTDDSE--QIDQSGNKDSHAPLLLRNAPKASDGRGWAFCSVAHLRANPQVFLWGMERFLQNIVVYGLLMNLTAYVSQALDNELIRGAKVNLYFGIGESLVFTVGAFIGDRIRGYLPFTYLIGAGFAAVFLLIVQT----------TYTDINVVYILAGFTGGAVGVGNTFLYATAEEVMLVHGSIAFPMTKMVAGIGMLIAPAFSGAVIDGYGYRGFFISMAVLVCLRVGLLTVI 452
BLAST of SMED30032562 vs. TrEMBL
Match: A0A183KF85 (MFS domain-containing protein OS=Schistosoma curassoni OX=6186 GN=SCUD_LOCUS13679 PE=4 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.450e-18 Identity = 107/462 (23.16%), Postives = 192/462 (41.56%), Query Frame = 1 Query: 115 IVCLTISLCVV-LNGKTRCFSVLAAELQNQTCNTIKDTCGMATLNWIAFLSEMIIVGGNPFITNMFIRVH-----SGVLGGKVTFQFCXXXXXXXXXXXFVGDPESLFVTDTLIQGISTSVLLGLVSFKLVHMYPDDNPNHKTVLLLSEIAPWFGVILCPLYGTLVSVYGWQSSYLLISFLIMVICVLAGIIEPKVSATXXXXXXXXXXXXXXXXTEEI--DSQTYFDKSDYWEIEDVGEMECQHPSLLQLLLNVN---------ISQVVGKSEVVVWFIERALMIIAEFNLIINLVHYMTSVLLEPILEASMIMITLGAGNIMGFLTIYVLGSKIRKYLPRIYILASVMLVISFIVWQIYGSQTDLILFTVPDAHFVVIV---IGAFSAISTAQSYYVAEDIIERPRIISVSLTKLAQSLGLLIGPISSGMLIQIDFFHSFFSVQAFIHSVRIMLLSFIVY 1440 +V L +L VV + GK R F + A L +T M LNW+ + PF T IR + + +L G + F C+ + V P LF+T TLI G+ ++++L S + + H P+ +I PLY L+ YGWQ ++ L L +++ LAGI+ + +I +Q + SD +E + + + P LL+ + + + +V VW ER L + + L++N+ Y++ L + ++ + + + G G + F ++G +IR YL Y + ++ + ++ Q T D + V ++ GA + Y +E+I+ I+ +TK+ +G+L+ P+ SG +I + FF A + S+R +LL I Y Sbjct: 38 LVLLVAALNVVCIGGKRRAFGIFVAALHKAYNDT-----SMTELNWVGDSYAAVGFFLMPFATTAIIRWNRPYRCTMLLAGLLIFISCMTSAV-------VPSPGYLFLTHTLIHGLGSTLILCGTSLVTEEYFDRSHRFHVLATAFVSGGPYGVLIFGPLYSNLIQSYGWQVAFQLSGLLFLLVTSLAGIV---------------------FISRDIFEYNQAILELSDSFEENTMNKALRKDPLLLRNSPKASDGRGWAFCSVEHLKNNPQVFVWGFERLLHNLVIYGLLMNMTAYVSQALNDQLVLGARVNLYFGIGESIVFTLGALIGDRIRGYLAVAYFIGALFAALFLVIMQN----------TYEDLNVVYVLAGFTGATVGVGNTFLYATSEEIMMVHGSIAFPMTKMIAGIGMLLAPLFSGAIIDGFGYGGFFISMAILVSIRAILLGLICY 456
BLAST of SMED30032562 vs. Planmine SMEST
Match: SMESG000014825.1 (SMESG000014825.1) HSP 1 Score: 889.797 bits (2298), Expect = 0.000e+0 Identity = 472/473 (99.79%), Postives = 473/473 (100.00%), Query Frame = 1 Query: 31 MNTFFRNIPTLNTPRKIFASLKSLKVISIVCLTISLCVVLNGKTRCFSVLAAELQNQTCNTIKDTCGMATLNWIAFLSEMIIVGGNPFITNMFIRVHSGVLGGKVTFQFCXXXXXXXXXXXFVGDPESLFVTDTLIQGISTSVLLGLVSFKLVHMYPDDNPNHKTVLLLSEIAPWFGVILCPLYGTLVSVYGWQSSYLLISFLIMVICVLAGIIEPKVSATXXXXXXXXXXXXXXXXTEEIDSQTYFDKSDYWEIEDVGEMECQHPSLLQLLLNVNISQVVGKSEVVVWFIERALMIIAEFNLIINLVHYMTSVLLEPILEASMIMITLGAGNIMGFLTIYVLGSKIRKYLPRIYILASVMLVISFIVWQIYGSQTDLILFTVPDAHFVVIVIGAFSAISTAQSYYVAEDIIERPRIISVSLTKLAQSLGLLIGPISSGMLIQIDFFHSFFSVQAFIHSVRIMLLSFIVYKKS 1449 MNTFFRNIPTLNTPRKIFASLKSLKVISIVCLTISLCVVLNGKTRCFSVLAAELQNQTCNTIKDTCGMATLNWIAFLSEMIIVGGNPFITNMFIRVHSGVLGGKVTFQFCLILTLGTLLTGFVGDPESLFVTDTLIQGISTSVLLGLVSFKLVHMYPDDNPNHKTVLLLSEIAPWFGVILCPLYGTLVSVYGWQSSYLLISFLIMVICVLAGIIEPKVSATEEQEENEDSDNSSIQNTEEIDSQTYFDKSDYWEIEDVGEMECQHPSLLQLLLNVNISQVVGKSEVVVWFIERALMIIAEFNLIINLVHYMTSVLLEPIL+ASMIMITLGAGNIMGFLTIYVLGSKIRKYLPRIYILASVMLVISFIVWQIYGSQTDLILFTVPDAHFVVIVIGAFSAISTAQSYYVAEDIIERPRIISVSLTKLAQSLGLLIGPISSGMLIQIDFFHSFFSVQAFIHSVRIMLLSFIVYKKS Sbjct: 1 MNTFFRNIPTLNTPRKIFASLKSLKVISIVCLTISLCVVLNGKTRCFSVLAAELQNQTCNTIKDTCGMATLNWIAFLSEMIIVGGNPFITNMFIRVHSGVLGGKVTFQFCLILTLGTLLTGFVGDPESLFVTDTLIQGISTSVLLGLVSFKLVHMYPDDNPNHKTVLLLSEIAPWFGVILCPLYGTLVSVYGWQSSYLLISFLIMVICVLAGIIEPKVSATEEQEENEDSDNSSIQNTEEIDSQTYFDKSDYWEIEDVGEMECQHPSLLQLLLNVNISQVVGKSEVVVWFIERALMIIAEFNLIINLVHYMTSVLLEPILQASMIMITLGAGNIMGFLTIYVLGSKIRKYLPRIYILASVMLVISFIVWQIYGSQTDLILFTVPDAHFVVIVIGAFSAISTAQSYYVAEDIIERPRIISVSLTKLAQSLGLLIGPISSGMLIQIDFFHSFFSVQAFIHSVRIMLLSFIVYKKS 473
BLAST of SMED30032562 vs. Planmine SMEST
Match: SMESG000065239.1 (SMESG000065239.1) HSP 1 Score: 152.525 bits (384), Expect = 6.389e-42 Identity = 93/318 (29.25%), Postives = 174/318 (54.72%), Query Frame = 1 Query: 568 LCPLYGTLVSVYGWQSSYLLISFLIMVICVLAGIIEPK------VSATXXXXXXXXXXXXXXXXTEEIDSQTY--FDKSDYWEIE--------DVGEMECQHPSLL----------QLLLNVNISQVVGKSEVVVWFIERALMIIAEFNLIINLVHYMTSVLLEPILEASMIMITLGAGNIMGFLTIYVLGSKIRKYLPRIYILASVMLVISFIVWQIYGSQTDLILFTVPDAHFVVIVIGAFSAISTAQSYYVAEDIIERPRIISVSLTKLAQSLGLLIGPISSGMLIQIDFFHSFFSVQAFIHSVRIMLLSFIVYK 1443 +CPL+G ++ WQ YL + L+++ ++ I+EPK VS ++ + +S + + ++Y ++ ++WE + D E + PS+ N V+ +S ++W IERAL + +N+++NLV YM + E + +AS+IM++ G G ++GF+ LG ++R +L IY +A+ +L + F+ W I + + F+ DAHF+ ++ G A ++ +Y +AED++ RP II+ LT+ Q+LGL+ P++SG++IQ D + SFF +Q + +R++LL +++K Sbjct: 1 MCPLFGVILQTTHWQQVYLFFAILLVIAIIITSIVEPKNYDQPAVSTFRIEKSFKAESSSKCPDHPDQQCKSYEEVNEIEFWENDQSIYSVSSDEASEEVKRPSIASEVPHAPEIRNFFFNPETWNVLRESSSIIWLIERALHTMILYNVVLNLVDYMVVEIQESLEKASLIMMSFGGGEVIGFVIAVGLGDQLRHHLLHIYTIATGILTVIFMSWHITQA-IHIDSFSNGDAHFLALICGLVMAFTSGYTYALAEDVLCRPGIIAYPLTRFCQALGLIFAPLTSGLVIQFDQYKSFFLIQTILTFIRLVLLIVLIFK 317
BLAST of SMED30032562 vs. Planmine SMEST
Match: SMESG000011418.1 (SMESG000011418.1) HSP 1 Score: 98.5969 bits (244), Expect = 4.495e-22 Identity = 109/463 (23.54%), Postives = 197/463 (42.55%), Query Frame = 1 Query: 64 NTPRKIFASLKSLKVISIVCLTISLCVVLNGKTRCFSVLAAELQNQTCNTIKDTCGMATLNWIAFLSEMIIVGGNPFITNMFIRVHS---GVLGGKVTFQFCXXXXXXXXXXXFVGDPESLFVTDTLIQGISTSVLLGLVSFKLVHMYPDDNPNHKTVLLLSEIAPWFGVILCPLYGTLVSVYGWQSSYLLISFLIMVICVLAGIIEPKVSATXXXXXXXXXXXXXXXXTEEIDSQTYFDKSDYWEIEDVGEMECQHPSLLQLLLNVNISQVVGKSEVVVWFIERALMIIAEFNLIINLVHYMTSVL--LEPILEASMIMITLGAGNIMGFLTIYVLGSKIRKYLPRIYILASVMLVISFIVWQIYGSQTDLILFTVPDAHFVVIV----IGAFSAISTAQSYYVAEDIIERPRIISVSLTKLAQSLGLLIGPISSGMLIQIDFFHSFFSVQAFIHSVRIMLL 1425 N +IF ++K L + +V TI++ + + GK R F + + ++ T M LNW+ + PFIT+ R S G+L + FC + FV + LF+T T++ GI ++ +L + + + ++ H L+ P+ +I PLYG +V Y W+ ++ +I+ L V + AGI+ Y K DY + E++ E PSL L+ N ++ +W I+R + L++NL + S+L E + + I + +G G + F V+G KIR LP +++ + ++ I+ + TV + +I +GA + + Y +E+I IS+ L+ + + G++I PI SG+LI + F FS + +R++ L Sbjct: 6 NILLRIF-TIKQLSIFILVVATINI-IFIGGKRRTFGIFISAFRSTFNGT-----SMVELNWVGDSYSAVAFFLMPFITSFVHRNRSYQKGMLAASI-LVFCSCMLTS-----FVTNAAELFITHTVLHGIGSAFILSTSALIIGEYFDKNHRYHVLATSLTTGGPYGSLIFGPLYGFMVQHYDWRFTFRVIAILFFV-EISAGIL------------------------------AYVPKPDYQKSEEIENYEGAFPSLKYLIQN---------KQIFLWGIDRICTSSILYGLLMNLTDLLRSMLNGTENLEGGAKINLMMGVGESIIFTISAVIGDKIRGKLPFFHLIGAAFTLLMLILMK-----------TVSYYPYAIIAFSIFLGAGAGVGNCMLYASSEEITFLHGSISLPLSNMMMAFGMIIAPIFSGLLIDMYGFLGLFSSLIILACIRMLCL 404
BLAST of SMED30032562 vs. Planmine SMEST
Match: SMESG000021812.1 (SMESG000021812.1) HSP 1 Score: 77.7962 bits (190), Expect = 3.537e-15 Identity = 103/468 (22.01%), Postives = 197/468 (42.09%), Query Frame = 1 Query: 88 SLKSLKVISI-VCLTISLCVV-LNGKTRCFSVLAAELQ---NQTC----NTIKDTCGMATLNWIAFLSEMIIVGGNPFITNMFIRVHSGVLGGKVTFQFCXXXXXXXXXXXFVGDPESLFVTDTLIQGISTSVLLGLVSFKLVHMYPDDNPNHKTVLLLSEIAPWFGVILCPLYGTLVSVYGWQSSYLLISFLIMVICVLAGIIE-PKVSATXXXXXXXXXXXXXXXXTEEIDSQTYFDKSDYWEIEDVGEMECQHPSLLQLLLNVNISQVVGKSEVVVWFIERALMIIAEFNLIINLVHY--MTSVLLEPILEASMIMITLGAGNIMGFLTIYVLGSKIRKYLPRIYILASVMLVISFIVWQIYGSQTDLILFTVPDAHFVVIVIGAFSAISTAQSYYVAEDIIERPRIISVSLTKLAQSLGLLIGPISSGMLIQIDFFHSFFSVQAFIHSVRIMLLS---FIVYKK 1446 SL KV SI V L I+L ++ + GK R F + + N T N + D+ + FL+ I + + MFI +G+ F FC + + + ++ LF+T TL+ GI + ++L + + + +P H L+ + +IL PL+ L+ YGW++++ +I L +++ LA I P+ + EI ++ D++ W+ + V+ + + WF++RAL F L++NL Y + ++ I S I I LG G F ++G IR L + ++ + +S I+ + + ++ + + +++G ++ Y + + + IS+ ++K+ + G L+ P SG++I F F + +RI+ LS FI+Y+K Sbjct: 10 SLMPEKVFSICVLLVITLNMIFIGGKRRNFGLFVSAFYRSFNGTSLFELNMVGDSYSSLAFILMPFLTSGIAYWNSAYQLAMFI---AGI------FIFCSSMLTSIVTSAWM-----LFLTHTLLHGIGSGIVLASCTLVVADYFNKKHPYHVLATSLASSGAYGVLILTPLFAHLIQAYGWRTAFQIIGILFVIVIGLAVIFYVPEENPYT-----------------EIGEKSQIDQTK-WKF-------------------TTWNHVMENKQTLFWFVDRALNGAIFFALLMNLTEYRRQSGIVDMEIESGSTINIMLGIGECFTFTVTMIIGDHIRGRLVVVQLIGACFSFLSTILMRA-------VTHSIVATNVITVMLGGSVGMANCVLYASSSEAMNIDGSISLPMSKMMSAFGALLSPFFSGLIIDGYGFEGLFVSLILLTFLRIVCLSTINFILYQK 419
BLAST of SMED30032562 vs. Planmine SMEST
Match: SMESG000026516.1 (SMESG000026516.1) HSP 1 Score: 59.6918 bits (143), Expect = 2.484e-9 Identity = 81/424 (19.10%), Postives = 164/424 (38.68%), Query Frame = 1 Query: 142 VVLNGKTRCFSVLAAELQNQTCNTIKDTCGMATLNWIAFLSEMIIVGGNPFITNMFIRVHSGVLGGKVTFQFCXXXXXXXXXXXFVGDPESLFVTDTLIQGISTSVLLGLVSFKLVHMYPDDNPNHKTVLLLSEIAPWFGVILCPLYGTLVSVYGWQSSYLLISFLIMVICVLAGIIEPKVSATXXXXXXXXXXXXXXXXTEEIDSQTYFDKSDYWEIEDVGEMECQHPSLLQLLLNVNISQVVGKSEVVVWFIERALMIIAEFNLIINLVHYMTSVLLEPILEASMIMITLGAGNIMGFLTIYVLGSKIRKYLPRIYILASVMLVISFIVWQIYGSQTDLILFTVPDAHFVVI--VIGAFSAISTAQS----YYVAEDIIERPRIISVSLTKLAQSLGLLIGPISSGMLIQIDFFHSFFSVQA 1395 + L GK R F A+ + N + LNWI +G ++ I ++ G F L + + + + FV +P LF+T TL GI +S+++ + + + H L ++ L+ L+ YGW+ +++++ + V+C LA K D EI G+M CQ N+ Q+ ++ WF +R + + + L++NL Y+ + ++++S++ I +G + +L V+ + + + L ++LV S S + ++ +H V I ++ F+ S S + E+ P ++ ++ G++I P+ + +I++ + FF VQ Sbjct: 30 IFLGGKRRAFGSFVAQFHKEYPNI-----SLTELNWIG--DSYSAIGYMSTSLSISIIIYFNRRYGLFQFLGALWVLISCITSSFVPNPHWLFLTHTLFHGIGSSLIISTAGLVVNEYFDKKHRYHILATTLVSGGSVASILFVTLFSKLIEHYGWRKTFIILGIIYFVVCSLAAFFFKK-------------------------------NKDLKEISSKGKMLCQGQ------WNIKSIQI---PLIIFWFTDRIMTSVVTYGLLLNLTDYVYQG-HKDLMKSSILTIIFASGEAVTYLIGSVITAITKDFFKE--KLRYILLVTSL-------SMSICLIILEYTSHIVSIRRLLCFFAGFSLGPSITFLFPAGEEFTRLPGHLAYPVSLGGMGFGMIISPLLTAKIIELLDYRWFFFVQG 396 The following BLAST results are available for this feature:
BLAST of SMED30032562 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SMED30032562 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30032562 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30032562 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of SMED30032562 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of SMED30032562 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SMED30032562 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of SMED30032562 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30032562 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of SMED30032562 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30032562 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30032562 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SMED30032562 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of SMED30032562 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30032562 ID=SMED30032562|Name=SMED30032562|organism=Schmidtea mediterranea sexual|type=transcript|length=1471bpback to top protein sequence of SMED30032562-orf-1 >SMED30032562-orf-1 ID=SMED30032562-orf-1|Name=SMED30032562-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=474bp MNTFFRNIPTLNTPRKIFASLKSLKVISIVCLTISLCVVLNGKTRCFSVLback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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