SMED30032528

Overview
NameSMED30032528
Smed IDSMED30032528
Length (bp)854
Neoblast Clusters

Zeng et. al., 2018



 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30032528

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 10

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
pigment cellSMED30032528h1SMcG0008845 SmedASXL_015724SmedAsxl_ww_GCZZ01PMID:29158443
He et al., 2017		whole organism asexual adult RNA-sequencing evidence
parenchymal cellSMED30032528h1SMcG0008845 dd_Smed_v4_11131_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30032528h1SMcG0008846 dd_Smed_v4_6092_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30032528h1SMcG0008846 dd_Smed_v4_6092_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30032528h1SMcG0008845 dd_Smed_v4_6092_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30032528h1SMcG0008845 dd_Smed_v4_6092_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
tail regionSMED30032528h1SMcG0008845 dd_Smed_v6_6092_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
tail regionSMED30032528h1SMcG0008846 dd_Smed_v6_6092_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
pigment cellSMED30032528h1SMcG0008845 dd_Smed_v6_6092_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
pigment cellSMED30032528h1SMcG0008846 dd_Smed_v6_6092_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30032528 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.008189:2354..3305 -4166
Homology
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BLAST of SMED30032528 vs. TrEMBL
Match: A0A1S3J6U5 (sodium-dependent glucose transporter 1-like OS=Lingula unguis OX=7574 GN=LOC106170691 PE=4 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.824e-11
Identity = 51/137 (37.23%), Postives = 75/137 (54.74%), Query Frame = -3 
Query:  250 EIFTPTLPNLKEKLNVSYEVMGRMMSLRSMGNIAALIVTGYVYDSFPAYVGSMISVACFIGGLCTLIIPWCKQFWLVVVLFFIQSGFQNSMNNGAQLIILKTFKEKAVGKMQIYHXXXXXXXXXXXXXSQPFLSKGV 660
            E+  PTL +L +K++ SYE + R +  RS+G   +  V G++ D FP +V   ISVA F+  + T+ IPWC +   + +L   Q   +  +N G     L  + EK    M   H G+GIGGL S  I++PFLS  V
Sbjct:   11 ELPGPTLKDLMKKVDSSYEEISRALIARSVGFFISSFVGGFLCDRFPKHVDIFISVAMFVNAVTTVSIPWCHELIPLAILMHFQGLSEGVLNTGGMTTCLNLWGEKVSAPMHSTHFGWGIGGLFSTQIARPFLSPDV 147
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BLAST of SMED30032528 vs. TrEMBL
Match: A0A4Z2CR48 (Sodium-dependent glucose transporter 1 OS=Schistosoma japonicum OX=6182 GN=EWB00_008203 PE=4 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.873e-11
Identity = 50/171 (29.24%), Postives = 88/171 (51.46%), Query Frame = -3 
Query:  193 VLIFIGIAPGLWQEIFTPTLPNLKEKLNVSYEVMGRMMSLRSMGNIAALIVTGYVYDSFPAYVGSMISVACFIGGLCTLIIPWCKQFWLVVVLFFIQSGFQNSMNNGAQLIILKTFKEKAVGKMQIYHXXXXXXXXXXXXXSQPFLSKGVSRNAKITKY--CRKVLNETEL 699
            VL +  I+ GL+ E+  PTLP L    N  Y+ +G  +S R++G +   ++ G++ D + A     I ++  +G + TLIIPWC    ++ ++ FI       +      ++   ++EKA G   + H GYG+G  ++ L+++PF    +S N+ I  +       N TEL
Sbjct:   26 VLCYAWISLGLYSEVLGPTLPTLMHNTNSDYDQIGMALSTRAIGLLFGSLIGGFLSDRYKALRAIFIMISLGVGAITTLIIPWCTNVIILTIVLFIAGLSHGFLTTNGNPLLASIWEEKAAGPFSLMHSGYGMGAAIAPLLAKPF---TISFNSSINNHSIVSNGTNSTEL 193
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BLAST of SMED30032528 vs. TrEMBL
Match: Q5DF05 (SJCHGC08251 protein OS=Schistosoma japonicum OX=6182 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.274e-10
Identity = 34/109 (31.19%), Postives = 58/109 (53.21%), Query Frame = -3 
Query:  382 VLIFIGIAPGLWQEIFTPTLPNLKEKLNVSYEVMGRMMSLRSMGNIAALIVTGYVYDSFPAYVGSMISVACFIGGLCTLIIPWCKQFWLVVVLFFI---QSGFQNSMNN 699
            VL +  I+ GL+ E+  PTLP L    N  Y+ +G  +S R++G +   ++ G++ D + A     I ++  +G + TLIIPWC    ++ ++ FI     GF  +  N
Sbjct:   33 VLCYAWISLGLYSEVLGPTLPTLMHNTNSDYDQIGMALSTRAIGLLFGSLIGGFLSDRYKALRAIFIMISLGVGAITTLIIPWCTNVIILTIVLFIAGLSHGFLTTNGN 141
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BLAST of SMED30032528 vs. TrEMBL
Match: K1QDJ2 (Sodium-dependent glucose transporter 1 OS=Crassostrea gigas OX=29159 GN=CGI_10009068 PE=4 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.483e-10
Identity = 47/148 (31.76%), Postives = 81/148 (54.73%), Query Frame = -3 
Query:  259 LVLIFIGIAPGLWQEIFTPTLPNLKEKLNVSYEVMGRMMSLRSMGNIAALIVTGYVYDSFPAYVGSMISVACFIGGLCTLIIPWCKQFWLVVVLFFIQSGFQNSMNNGAQLIILKTFKEKAVGKMQIYHXXXXXXXXXXXXXSQPFLS 702
            L L+ + I  GL+ EI  PT  +LK + ++ YE + R MS RS+G      + G++ D    Y   M++V   +G   T++ P  ++  L+  LF +Q  F+  +N   Q ++L+ ++EKA   + + H G+GIG  +   I+ PFL+
Sbjct:   26 LFLVSVWICLGLYLEITGPTQKDLKLRAHLDYEEVSRAMSGRSIGFFIGAAIGGFLVDKLDPYCDLMVAVCLDLGATATIVAPHAQEIALLWFLFVMQGTFEGIINIAGQKLVLEIWQEKASSPLFLLHFGFGIGSFIVPQIANPFLA 173
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BLAST of SMED30032528 vs. TrEMBL
Match: R7UAH2 (Uncharacterized protein OS=Capitella teleta OX=283909 GN=CAPTEDRAFT_222889 PE=4 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.689e-9
Identity = 40/155 (25.81%), Postives = 85/155 (54.84%), Query Frame = -3 
Query:  238 IFIGIAP---GLWQEIFTPTLPNLKEKLNVSYEVMGRMMSLRSMGNIAALIVTGYVYDSFPAYVGSMISVACFIGGLCTLIIPWCKQFWLVVVLFFIQSGFQNSMNNGAQLIILKTFKEKAVGKMQIYHXXXXXXXXXXXXXSQPFLSKGVSRNA 693
            +F+ +AP   G++ E+  PT+  L  +++ +YE + + +  RS+G +   +++G++ D F  ++  ++S+A  +G   T++ PWC    L+ V+F IQ   Q  ++     + L  +   A   +   H G+GIG  ++ L+++PF+    + N+
Sbjct:   21 VFMVLAPTVMGIYLELIGPTMQELMNRVDANYEEISQALVARSVGYLLGSLISGFLADRFKGHLELLLSIAMLLGATGTMLSPWCTVLGLLAVMFLIQGLGQGMIDTSNNTLCLLMWGAVASAPIHALHFGFGIGAFIAPLLARPFIGDNNTSNS 175
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BLAST of SMED30032528 vs. Planmine SMEST
Match: SMESG000076465.1 (SMESG000076465.1)

HSP 1 Score: 413.69 bits (1062), Expect = 4.049e-144
Identity = 249/251 (99.20%), Postives = 250/251 (99.60%), Query Frame = -3 
Query:    1 MSIRITFLKNWYQNGLLLVLIFIGIAPGLWQEIFTPTLPNLKEKLNVSYEVMGRMMSLRSMGNIAALIVTGYVYDSFPAYVGSMISVACFIGGLCTLIIPWCKQFWLVVVLFFIQSGFQNSMNNGAQLIILKTFKEKAVGKMQIYHXXXXXXXXXXXXXSQPFLSKGVSRNAKITKYCRKVLNETELGQXXXXXXXXXXXXXXIENKRLSFEYIYXXXXXXXXXXXXVNFAYSFLPNPDAEKYQIKKREPW 753
            MSIRITFLKNWYQNGLLLVLIFIGIAPGLWQEIFTPTLPNLKEKLNVSYEVMGRMMSLRSMGNIAALIVTGYVYDSFPAYVGSMISVACFIGGLCTLIIPWCKQFWLVVVLFFIQSGFQNSMNNGAQLIILKTFKEKAVGKMQIYHLGYGIGGLLSGLISQPFLSK VSRNAKITKYCRKVLNETELGQIVPSIIGSNISSIQIEN+RLSFEYIYVIAGVVAILIAIVNFAYSFLPNPDAEKYQIKKREPW
Sbjct:    1 MSIRITFLKNWYQNGLLLVLIFIGIAPGLWQEIFTPTLPNLKEKLNVSYEVMGRMMSLRSMGNIAALIVTGYVYDSFPAYVGSMISVACFIGGLCTLIIPWCKQFWLVVVLFFIQSGFQNSMNNGAQLIILKTFKEKAVGKMQIYHLGYGIGGLLSGLISQPFLSKSVSRNAKITKYCRKVLNETELGQIVPSIIGSNISSIQIENRRLSFEYIYVIAGVVAILIAIVNFAYSFLPNPDAEKYQIKKREPW 251
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BLAST of SMED30032528 vs. Planmine SMEST
Match: SMESG000076464.1 (SMESG000076464.1)

HSP 1 Score: 308.145 bits (788), Expect = 9.757e-103
Identity = 176/251 (70.12%), Postives = 207/251 (82.47%), Query Frame = -3 
Query:    1 MSIRITFLKNWYQNGLLLVLIFIGIAPGLWQEIFTPTLPNLKEKLNVSYEVMGRMMSLRSMGNIAALIVTGYVYDSFPAYVGSMISVACFIGGLCTLIIPWCKQFWLVVVLFFIQSGFQNSMNNGAQLIILKTFKEKAVGKMQIYHXXXXXXXXXXXXXSQPFLSKGVSRNAKITKYCRKVLNETELGQXXXXXXXXXXXXXXIENKRLSFEYIYXXXXXXXXXXXXVNFAYSFLPNPDAEKYQIKKREPW 753
            MSI++   K +YQNGLLL+L+ +GI+PGLW EI TPTLPNLKEKLNVSYE+MG+MMS+RS GNI ALI TGYVYD+FP+YV  + S ACF GG CTL+IPWCKQFW+VVVLFFIQS  QN M NGAQ+ I++ FK+KAV KMQIYHLGYGIGGLLSGLISQPFL+K +S+ AKIT YCRK+LNET   Q   S   +NISS QIENK LSFEYIY+I GV+A+L AI N +YSF+P P+ +K QIKKREPW
Sbjct:    1 MSIKVPSYKTFYQNGLLLILVCLGISPGLWDEIVTPTLPNLKEKLNVSYEIMGKMMSMRSFGNIVALITTGYVYDTFPSYVAYITSAACFTGGCCTLLIPWCKQFWVVVVLFFIQSAAQNFMTNGAQVTIMRIFKDKAVAKMQIYHLGYGIGGLLSGLISQPFLTKEISKKAKITNYCRKLLNETGFNQFGSSSPRNNISSSQIENKNLSFEYIYLITGVIAMLFAITNISYSFVPKPNKDKCQIKKREPW 251
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BLAST of SMED30032528 vs. Planmine SMEST
Match: SMESG000076463.1 (SMESG000076463.1)

HSP 1 Score: 145.976 bits (367), Expect = 2.613e-40
Identity = 74/174 (42.53%), Postives = 116/174 (66.67%), Query Frame = -3 
Query:  187 LLLVLIFIGIAPGLWQEIFTPTLPNLKEKLNVSYEVMGRMMSLRSMGNIAALIVTGYVYDSFPAYVGSMISVACFIGGLCTLIIPWCKQFWLVVVLFFIQSGFQNSMNNGAQLIILKTFKEKAVGKMQIYHXXXXXXXXXXXXXSQPFLSKGVSRNAKITKYCRKVLNETELGQ 708
            L+ +L+ +G+  G+ QE+ TPTLPN++ + NVSYE +G ++SLR +GNI   +   Y+YDS+P  +   +   C I G+CT++IPWC+ F LV  + + QSGF ++++N  QL +L+ FK K++ +MQ+YH G+GIG LLSG I+ PF++      +K+TKYC + L    L  
Sbjct:   16 LIAILVMLGLVIGICQEMMTPTLPNIRSQFNVSYETLGTVLSLRGLGNIIFTLSASYLYDSYPQSLNHFMISECIISGVCTILIPWCRYFSLVTFVIYFQSGFLSALHNACQLTVLREFKTKSISRMQLYHTGFGIGRLLSGFIAAPFVANKSGGLSKLTKYCNEKLQLERLND 189
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BLAST of SMED30032528 vs. Planmine SMEST
Match: SMESG000015183.1 (SMESG000015183.1)

HSP 1 Score: 53.9138 bits (128), Expect = 5.251e-8
Identity = 41/159 (25.79%), Postives = 70/159 (44.03%), Query Frame = -3 
Query:  316 EQVD*NYNEILGQMSIRITFLKNWYQNGLLLVLIFIGIAPGLWQEIFTPTLPNLKEKLNVSYEVMGRMMSLRSMGNIAALIVTGYVYDSFPAYVGSMISVACFIGGLCTLIIPWCKQFWLVVVLFFIQSGFQNSMNNGAQLIILKTFKEKAVGKMQIYH 792
             +++  +NEI    S RIT LK  Y+     VL    I+ GL+ EI  P LP L+     ++E + R +S R+ G +   ++ G + D F  +   +I +   + G+    IP C+   ++    FI      +        +   +KEK+ G     H
Sbjct:   21 NKIENGFNEI--SQSKRITHLK--YRLIKTFVLFLSWISLGLFSEIIGPALPALRIISGTNHEEISRALSSRAAGLLIGSLIGGVLADQFIKFRNLLIFIFLSLAGITVATIPLCQSLLILAFNLFISGFSHGAFTTSGNPSLGALWKEKSTGPFNFMH 175
The following BLAST results are available for this feature:
BLAST of SMED30032528 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032528 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032528 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032528 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032528 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032528 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032528 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032528 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A1S3J6U51.824e-1137.23sodium-dependent glucose transporter 1-like OS=Lin... [more]
A0A4Z2CR482.873e-1129.24Sodium-dependent glucose transporter 1 OS=Schistos... [more]
Q5DF053.274e-1031.19SJCHGC08251 protein OS=Schistosoma japonicum OX=61... [more]
K1QDJ23.483e-1031.76Sodium-dependent glucose transporter 1 OS=Crassost... [more]
R7UAH23.689e-925.81Uncharacterized protein OS=Capitella teleta OX=283... [more]
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BLAST of SMED30032528 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032528 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032528 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032528 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032528 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032528 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 4
Match NameE-valueIdentityDescription
SMESG000076465.14.049e-14499.20SMESG000076465.1[more]
SMESG000076464.19.757e-10370.12SMESG000076464.1[more]
SMESG000076463.12.613e-4042.53SMESG000076463.1[more]
SMESG000015183.15.251e-825.79SMESG000015183.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30032528 ID=SMED30032528|Name=SMED30032528|organism=Schmidtea mediterranea sexual|type=transcript|length=854bp
CCAAGGCTCTCTTTTCTTGATTTGATATTTCTCAGCGTCAGGATTCGGCA
GAAAACTGTACGCAAAGTTTACTATCGCTATGAGGATAGCCACCACTCCT
GCTATGACATAAATATATTCGAAGGATAAACGTTTATTTTCAATTTGAAT
AGAACTGATATTGCTTCCAATTATTGAAGGAACAATCTGACCCAATTCTG
TCTCATTGAGAACCTTTCGACAATACTTTGTAATTTTGGCGTTACGAGAG
ACACCTTTTGACAGAAACGGTTGAGATATTAATCCTGATAATAATCCTCC
TATTCCATATCCTAAATGATATATTTGCATTTTCCCCACGGCCTTTTCTT
TGAATGTCTTTAATATGATTAGTTGAGCTCCGTTGTTCATAGAATTTTGG
AATCCAGATTGAATAAAAAAGAGTACAACAACCAACCAAAACTGTTTACA
CCAAGGGATGATTAAGGTACACAATCCTCCGATAAAGCAGGCGACGGATA
TCATAGATCCCACATAGGCAGGAAAAGAATCATAAACGTATCCTGTCACT
ATTAATGCCGCAATATTTCCCATGCTTCTCAAGGACATCATTCTCCCCAT
GACTTCATACGACACATTTAATTTCTCTTTCAAATTCGGCAATGTTGGAG
TGAATATTTCCTGCCATAAGCCCGGCGCTATTCCAATGAAGATCAGTACC
AAGAGTAGACCATTCTGATACCAATTCTTTAAAAAAGTAATCCTAATTGA
CATTTGACCTAAAATCTCGTTGTAGTTCTAGTCGACTTGTTCATAAACAA
TGAGATTTAATTGAAATTCGGAATCTCGTCAGCTTCGCCAACGCGCATAA
AGTA
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protein sequence of SMED30032528-orf-1

>SMED30032528-orf-1 ID=SMED30032528-orf-1|Name=SMED30032528-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=251bp
MSIRITFLKNWYQNGLLLVLIFIGIAPGLWQEIFTPTLPNLKEKLNVSYE
VMGRMMSLRSMGNIAALIVTGYVYDSFPAYVGSMISVACFIGGLCTLIIP
WCKQFWLVVVLFFIQSGFQNSMNNGAQLIILKTFKEKAVGKMQIYHLGYG
IGGLLSGLISQPFLSKGVSRNAKITKYCRKVLNETELGQIVPSIIGSNIS
SIQIENKRLSFEYIYVIAGVVAILIAIVNFAYSFLPNPDAEKYQIKKREP
W
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002075pigment cell
Vocabulary: INTERPRO
TermDefinition
IPR036259MFS_trans_sf
IPR011701MFS
IPR020846MFS_dom
Vocabulary: molecular function
TermDefinition
GO:0022857transmembrane transporter activity
Vocabulary: cellular component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: biological process
TermDefinition
GO:0055085transmembrane transport
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011701Major facilitator superfamilyPFAMPF07690MFS_1coord: 31..249
e-value: 1.1E-17
score: 64.0
NoneNo IPR availableGENE3DG3DSA:1.20.1250.20coord: 15..244
e-value: 5.4E-16
score: 60.5
NoneNo IPR availablePANTHERPTHR23121FAMILY NOT NAMEDcoord: 18..242
NoneNo IPR availablePANTHERPTHR23121:SF9SODIUM-DEPENDENT GLUCOSE TRANSPORTER 1coord: 18..242
NoneNo IPR availableCDDcd17395MFS_MFSD4coord: 36..165
e-value: 1.11515E-7
score: 49.8308
NoneNo IPR availableTMHMMTMhelixcoord: 105..122
NoneNo IPR availableTMHMMTMhelixcoord: 142..164
NoneNo IPR availableTMHMMTMhelixcoord: 76..98
NoneNo IPR availableTMHMMTMhelixcoord: 213..235
NoneNo IPR availableTMHMMTMhelixcoord: 12..34
IPR036259MFS transporter superfamilySUPERFAMILYSSF103473MFS general substrate transportercoord: 8..232