Expressed conserved protein

Overview
NameExpressed conserved protein
Smed IDSMED30032448
Length (bp)1861
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Expressed conserved protein (SMED30032448) t-SNE clustered cells

Violin plots show distribution of expression levels for Expressed conserved protein (SMED30032448) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Expressed conserved protein (SMED30032448) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Expressed conserved protein (SMED30032448) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30032448

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 13

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
pharynxSMED30032448SMESG000064362.1 dd_Smed_v4_3795_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30032448SMESG000064362.1 dd_Smed_v4_3795_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30032448SMESG000064362.1 dd_Smed_v4_3795_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30032448SMESG000064362.1 dd_Smed_v4_3795_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neuronSMED30032448SMESG000064362.1 dd_Smed_v4_3795_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		whole organism asexual adult colorimetric in situ hybridization evidence
neoblastSMED30032448SMESG000064362.1 dd_Smed_v4_3795_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30032448SMESG000064362.1 dd_Smed_v4_3795_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cilated neuronSMED30032448SMESG000064362.1 dd_Smed_v4_3795_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30032448SMESG000064362.1 Contig38935newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30032448SMESG000064362.1 Contig38935uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
head regionSMED30032448SMESG000064362.1 dd_Smed_v6_3795_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
head regionSMED30032448SMESG000064362.1 OX_Smed_1.0.04326ox_Smed_v2PMID:24238224
Kao et al., 2013		whole organism asexual adult RNA-sequencing evidence
cholinergic neuronSMED30032448SMESG000064362.1 dd_Smed_v6_3795_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
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BLAST of Expressed conserved protein vs. TrEMBL
Match: A0A1I8FCJ2 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.619e-16
Identity = 46/100 (46.00%), Postives = 70/100 (70.00%), Query Frame = 3 
Query:  936 LGNIDIELINDEGETECVDIDIADTENSKEEDKYLPNTRRQSISDRINRRRTSELAAEIIRLSAEHRKKEFADLLNEHEEIVQNIEIWKKFGVLPQTKSQ 1235
            L +I++ + N++GE E V+ID+ADTE+     +     R+Q I+DRI+RRR SE+AA+IIR+SA HR++EFA L++EH+ IV+ +E     G  PQ + Q
Sbjct:  170 LSSIEMMVQNEDGEAEEVEIDVADTEDDVVARRSRKRCRKQPIADRISRRRNSEVAADIIRMSAAHRRREFAALIDEHQAIVRELE-----GQKPQQQHQ 264
[Close]
BLAST of Expressed conserved protein vs. TrEMBL
Match: A0A267DZ51 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig006745g1 PE=4 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.003e-14
Identity = 48/106 (45.28%), Postives = 71/106 (66.98%), Query Frame = 3 
Query:  936 LGNIDIELINDEGETECVDIDIADTENSKEEDKYLP------NTRRQSISDRINRRRTSELAAEIIRLSAEHRKKEFADLLNEHEEIVQNIEIWKKFGVLPQTKSQ 1235
            L +I++ + N++GE E V+ID+ADTE+    D   P        R+Q I+DRI+RRR SE+AA+IIR+SA HR++EFA L++EH+ IV+ +E     G  PQ + Q
Sbjct:  395 LSSIEMMVQNEDGEAEEVEIDVADTED----DVVAPLAKDNQRCRKQPIADRISRRRNSEVAADIIRMSAAHRRREFAALIDEHQAIVRELE-----GQKPQQQHQ 491
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BLAST of Expressed conserved protein vs. TrEMBL
Match: A0A1I8IHD5 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.844e-12
Identity = 47/102 (46.08%), Postives = 70/102 (68.63%), Query Frame = 3 
Query:  936 LGNIDIELINDEGETECVDIDIADTENSKEEDKYLPNTR--RQSISDRINRRRTSELAAEIIRLSAEHRKKEFADLLNEHEEIVQNIEIWKKFGVLPQTKSQ 1235
            L +I++ + N++GE E V+ID+ADTE+         N R  +Q I+DRI+RRR SE+AA+IIR+SA HR++EFA L++EH+ IV+ +E     G  PQ + Q
Sbjct:   55 LSSIEMMVQNEDGEAEEVEIDVADTEDDVVAPLAKDNQRCRKQPIADRISRRRNSEVAADIIRMSAAHRRREFAALIDEHQAIVRELE-----GQKPQQQHQ 151
[Close]
BLAST of Expressed conserved protein vs. TrEMBL
Match: A0A0R3WHY1 (Uncharacterized protein OS=Hydatigena taeniaeformis OX=6205 GN=TTAC_LOCUS174 PE=4 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.122e-12
Identity = 47/124 (37.90%), Postives = 65/124 (52.42%), Query Frame = 3 
Query:  861 TLSSTSLTPSFIFKSK-PAPPRRTNTLGNIDIELINDEGETECVDIDIADTENSKEEDKYLPN----------TRRQSISDRINRRRTSELAAEIIRLSAEHRKKEFADLLNEHEEIVQNIEIW 1199
            T+   S T SF   S+ P P +   +   + IEL+N+ GE + V+ID  D       D  L +           RRQSI+DRINRRR +E A E  R+ A  R+KEF  LL EH  +V +++ W
Sbjct:    4 TIPELSRTVSFGSISENPLPSQNQRSQSVVSIELLNENGEHDMVEIDEVDDVLEASADSRLGSHGASNDHEMRVRRQSIADRINRRRDTEFAFEFTRVEAAGREKEFFRLLEEHSRLVHSVQFW 127
[Close]
BLAST of Expressed conserved protein vs. TrEMBL
Match: A0A0R3VSK2 (Uncharacterized protein OS=Taenia asiatica OX=60517 GN=TASK_LOCUS150 PE=4 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 6.210e-12
Identity = 40/95 (42.11%), Postives = 53/95 (55.79%), Query Frame = 3 
Query:  945 IDIELINDEGETECVDIDIADTENSKEEDKYL----------PNTRRQSISDRINRRRTSELAAEIIRLSAEHRKKEFADLLNEHEEIVQNIEIW 1199
            + IEL+N+ GE + V+ID  D       D  L          P  RRQSI+DRINRRR +E A E  R+ A  R+KEF  LL EH  +V +++ W
Sbjct:   33 VSIELLNENGEYDTVEIDEVDDVLEDPVDSRLGSRGASSDREPRVRRQSIADRINRRRNTEFAFEFTRVEAAGREKEFFRLLEEHSRLVHSVQFW 127
[Close]
BLAST of Expressed conserved protein vs. Planmine SMEST
Match: SMESG000064362.1 (SMESG000064362.1)

HSP 1 Score: 670.618 bits (1729), Expect = 0.000e+0
Identity = 358/358 (100.00%), Postives = 358/358 (100.00%), Query Frame = 3 
Query:  324 MHGLWNNIKSSVEETLETIILSPKKLRKKFAENKQNSTISEQSASSDKESQDQTKKINDNSMYKGLTSTSNPEEKSDKTNIDNITQRIPAVITNESECDRETLIERQETGYSSHXXXXXXXXXXXXXXXACQPETRLMRNADPKNSSQTDSCHLTGDHNQMEPSNVRLTSSTNFKKGGDTLSSTSLTPSFIFKSKPAPPRRTNTLGNIDIELINDEGETECVDIDIADTENSKEEDKYLPNTRRQSISDRINRRRTSELAAEIIRLSAEHRKKEFADLLNEHEEIVQNIEIWKKFGVLPQTKSQVKSTLETVXXXXXXXXXXXXPAYFRQINDNASFYLSSNRFNQDNKENKTLPRSH 1397
            MHGLWNNIKSSVEETLETIILSPKKLRKKFAENKQNSTISEQSASSDKESQDQTKKINDNSMYKGLTSTSNPEEKSDKTNIDNITQRIPAVITNESECDRETLIERQETGYSSHSNGSSVGQPSISSSIACQPETRLMRNADPKNSSQTDSCHLTGDHNQMEPSNVRLTSSTNFKKGGDTLSSTSLTPSFIFKSKPAPPRRTNTLGNIDIELINDEGETECVDIDIADTENSKEEDKYLPNTRRQSISDRINRRRTSELAAEIIRLSAEHRKKEFADLLNEHEEIVQNIEIWKKFGVLPQTKSQVKSTLETVDDEDSDDIIDEEPAYFRQINDNASFYLSSNRFNQDNKENKTLPRSH
Sbjct:    1 MHGLWNNIKSSVEETLETIILSPKKLRKKFAENKQNSTISEQSASSDKESQDQTKKINDNSMYKGLTSTSNPEEKSDKTNIDNITQRIPAVITNESECDRETLIERQETGYSSHSNGSSVGQPSISSSIACQPETRLMRNADPKNSSQTDSCHLTGDHNQMEPSNVRLTSSTNFKKGGDTLSSTSLTPSFIFKSKPAPPRRTNTLGNIDIELINDEGETECVDIDIADTENSKEEDKYLPNTRRQSISDRINRRRTSELAAEIIRLSAEHRKKEFADLLNEHEEIVQNIEIWKKFGVLPQTKSQVKSTLETVDDEDSDDIIDEEPAYFRQINDNASFYLSSNRFNQDNKENKTLPRSH 358
[Close]
BLAST of Expressed conserved protein vs. Planmine SMEST
Match: SMESG000064362.1 (SMESG000064362.1)

HSP 1 Score: 541.191 bits (1393), Expect = 0.000e+0
Identity = 295/298 (98.99%), Postives = 296/298 (99.33%), Query Frame = 3 
Query:  507 MY-KGLTSTSNPEEKSDKTNIDNITQRIPAVITNESECDRETLIERQETGYSSHXXXXXXXXXXXXXXXACQPETRLMRNADPKNSSQTDSCHLTGDHNQMEPSNVRLTSSTNFKKGGDTLSSTSLTPSFIFKSKPAPPRRTNTLGNIDIELINDEGETECVDIDIADTENSKEEDKYLPNTRRQSISDRINRRRTSELAAEIIRLSAEHRKKEFADLLNEHEEIVQNIEIWKKFGVLPQTKSQVKSTLETVXXXXXXXXXXXXPAYFRQINDNASFYLSSNRFNQDNKENKTLPRSH 1397
            MY + LTSTSNPEEKSDKTNIDNITQRIPAVITNESECDRETLIERQETGYSSHSNGSSVGQPSISSSIACQPETRLMRNADPKNSSQTDSCHLTGDHNQMEPSNVRLTSSTNFKKGGDTLSSTSLTPSFIFKSKPAPPRRTNTLGNIDIELINDEGETECVDIDIADTENSKEEDKYLPNTRRQSISDRINRRRTSELAAEIIRLSAEHRKKEFADLLNEHEEIVQNIEIWKKFGVLPQTKSQVKSTLETVDDEDSDDIIDEEPAYFRQINDNASFYLSSNRFNQDNKENKTLPRSH
Sbjct:    1 MYNRWLTSTSNPEEKSDKTNIDNITQRIPAVITNESECDRETLIERQETGYSSHSNGSSVGQPSISSSIACQPETRLMRNADPKNSSQTDSCHLTGDHNQMEPSNVRLTSSTNFKKGGDTLSSTSLTPSFIFKSKPAPPRRTNTLGNIDIELINDEGETECVDIDIADTENSKEEDKYLPNTRRQSISDRINRRRTSELAAEIIRLSAEHRKKEFADLLNEHEEIVQNIEIWKKFGVLPQTKSQVKSTLETVDDEDSDDIIDEEPAYFRQINDNASFYLSSNRFNQDNKENKTLPRSH 298
The following BLAST results are available for this feature:
BLAST of Expressed conserved protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Expressed conserved protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Expressed conserved protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Expressed conserved protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Expressed conserved protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Expressed conserved protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Expressed conserved protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Expressed conserved protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A1I8FCJ24.619e-1646.00Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A267DZ513.003e-1445.28Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A1I8IHD54.844e-1246.08Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A0R3WHY15.122e-1237.90Uncharacterized protein OS=Hydatigena taeniaeformi... [more]
A0A0R3VSK26.210e-1242.11Uncharacterized protein OS=Taenia asiatica OX=6051... [more]
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BLAST of Expressed conserved protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Expressed conserved protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Expressed conserved protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Expressed conserved protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Expressed conserved protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Expressed conserved protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000064362.10.000e+0100.00SMESG000064362.1[more]
SMESG000064362.10.000e+098.99SMESG000064362.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30032448 ID=SMED30032448|Name=Expressed conserved protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1861bp
AAATAAAGGTAGATTATTTCATATAATTATCACTGAAATGCAGCTGCAAG
ATGCCATTTATAAATTGTTTTTTCGTTTTGTTTTAATACGAAATATATAG
AAGGAAACGTTGAAGAGATAATATTTGTTTAGCAGAATCGGAGAAAGAGT
AAATATTTTTCTCATACTTTTCCAAACAGTGATTTGAAATAATGGAAAGA
GAATTGTCGGCCTATCACTGACTATGATAATGAGTAGTTCTGTAAAATTT
TCTACCAATCGCTGTGTAGACATGTAACGACTATAGTGTGAAAAGATTTC
AATTAATTCAATCATTTGTTTTAATGCATGGTTTATGGAATAACATTAAA
TCTTCTGTCGAAGAAACTCTAGAAACTATTATTTTAAGTCCGAAAAAGTT
GAGAAAGAAATTTGCAGAAAACAAACAAAATTCAACAATATCAGAACAAT
CGGCATCGTCTGACAAGGAATCCCAAGATCAAACAAAAAAAATAAACGAC
AATTCAATGTACAAAGGGCTGACATCAACTTCAAATCCTGAAGAAAAATC
AGACAAAACAAACATTGATAATATAACGCAGAGAATTCCGGCAGTTATTA
CAAATGAAAGTGAATGTGACAGAGAGACATTAATTGAGAGACAGGAAACT
GGTTACTCGTCGCATTCTAATGGAAGTTCTGTAGGACAACCATCAATCAG
TTCGTCAATAGCTTGCCAACCTGAAACACGATTAATGAGAAATGCAGATC
CTAAAAATTCTTCCCAGACAGACTCTTGTCATTTAACAGGTGACCACAAT
CAAATGGAACCATCAAATGTTCGATTAACAAGTTCAACGAATTTTAAAAA
GGGCGGAGACACATTATCCAGCACATCCTTGACGCCTAGTTTCATATTCA
AATCAAAGCCAGCACCACCAAGACGTACTAATACATTGGGAAACATTGAC
ATTGAACTCATCAATGATGAAGGAGAGACAGAATGTGTAGATATCGATAT
TGCCGATACAGAAAATAGCAAAGAAGAAGATAAATATCTCCCAAATACGA
GAAGACAGTCCATTAGTGACAGAATTAATCGTCGGCGTACATCAGAATTG
GCTGCAGAAATTATTCGGTTGTCAGCTGAGCACAGAAAAAAAGAATTTGC
TGATTTATTAAATGAACACGAAGAAATAGTACAAAATATAGAAATCTGGA
AAAAATTTGGAGTTCTTCCGCAAACAAAGTCTCAAGTAAAGTCAACATTA
GAAACAGTTGACGATGAAGATTCCGATGACATCATCGACGAAGAACCGGC
GTACTTTCGTCAGATAAACGACAACGCATCATTCTATCTGTCATCAAACC
GATTCAATCAAGACAATAAAGAAAACAAGACCCTGCCTCGATCTCACTGA
AAAACCAACAGCCGAAAGACGTAGACAACCATGAGAAACGAATAGAATTT
GTAAGCTCATGAAATTCAAGAAATTCTTGTTTTAATGTTTACCCCGTAAT
CTAGTAATGTTGACACTAATGATACTTTTTGTTTGGTTTTAATAAGCATC
GCACAGATTCGTTGGTAAATATTTTGTTAAATCAATTATAGTGTGTATGT
GTGTGTGTTTTCTTGTTTTAATTATCATCATTATTTAAACATTAACGATA
AGATTTTACTTGTTGAATAATTTATCCATTAAAAAATGCATTACTCCGTG
GTGTTATTCCTTTTGTGATGATTTGTTATTAAATGTTTCGGGAAATTCCA
TAAAGTCTACGAATTATTGTTCCTTTGTTGAATAAATTTCTTTTTTGATT
TCAACAAATTAGAGTAAATCGGTTGTTAATTTTGTGATAGAAATACACTG
GGTGGAATTTT
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protein sequence of SMED30032448-orf-1

>SMED30032448-orf-1 ID=SMED30032448-orf-1|Name=SMED30032448-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=359bp
MHGLWNNIKSSVEETLETIILSPKKLRKKFAENKQNSTISEQSASSDKES
QDQTKKINDNSMYKGLTSTSNPEEKSDKTNIDNITQRIPAVITNESECDR
ETLIERQETGYSSHSNGSSVGQPSISSSIACQPETRLMRNADPKNSSQTD
SCHLTGDHNQMEPSNVRLTSSTNFKKGGDTLSSTSLTPSFIFKSKPAPPR
RTNTLGNIDIELINDEGETECVDIDIADTENSKEEDKYLPNTRRQSISDR
INRRRTSELAAEIIRLSAEHRKKEFADLLNEHEEIVQNIEIWKKFGVLPQ
TKSQVKSTLETVDDEDSDDIIDEEPAYFRQINDNASFYLSSNRFNQDNKE
NKTLPRSH*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000099neuron
PLANA:0000418head
PLANA:0000463cholinergic neuron
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..74
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..99