RNA binding protein fox-1

Overview
NameRNA binding protein fox-1
Smed IDSMED30032446
Length (bp)1445
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of RNA binding protein fox-1 (SMED30032446) t-SNE clustered cells

Violin plots show distribution of expression levels for RNA binding protein fox-1 (SMED30032446) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of RNA binding protein fox-1 (SMED30032446) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for RNA binding protein fox-1 (SMED30032446) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30032446

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 10

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
Smed sexual biotypeSMED30032446h1SMcG0003105 Contig11634newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30032446h1SMcG0003105 Contig11634uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30032446h1SMcG0003104 Contig46262newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30032446h1SMcG0003104 Contig46262uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30032446h1SMcG0003104 Contig11634newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30032446h1SMcG0003104 Contig11634uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
epidermisSMED30032446h1SMcG0003104 dd_Smed_v4_7213_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30032446h1SMcG0003104 dd_Smed_v4_7213_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30032446h1SMcG0003104 dd_Smed_v4_7213_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30032446h1SMcG0003104 dd_Smed_v4_7213_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Human
Match: RBFOX3 (RNA binding fox-1 homolog 3 [Source:HGNC Symbol;Acc:HGNC:27097])

HSP 1 Score: 150.214 bits (378), Expect = 6.550e-41
Identity = 68/88 (77.27%), Postives = 77/88 (87.50%), Query Frame = 1 
Query:  601 PKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKKKVEN 864
            PKRLH+SNIPFRFR+ DLRQ+ G +G ILDVEIIFNERGSKGFGFVTF T  +A++ARE LNGTIVEGRKIE+NNATARV+T KK  N
Sbjct:   53 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVMTNKKTGN 140
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Human
Match: RBFOX3 (RNA binding fox-1 homolog 3 [Source:HGNC Symbol;Acc:HGNC:27097])

HSP 1 Score: 150.214 bits (378), Expect = 7.062e-41
Identity = 68/88 (77.27%), Postives = 77/88 (87.50%), Query Frame = 1 
Query:  601 PKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKKKVEN 864
            PKRLH+SNIPFRFR+ DLRQ+ G +G ILDVEIIFNERGSKGFGFVTF T  +A++ARE LNGTIVEGRKIE+NNATARV+T KK  N
Sbjct:   98 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVMTNKKTGN 185
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Human
Match: RBFOX3 (RNA binding fox-1 homolog 3 [Source:HGNC Symbol;Acc:HGNC:27097])

HSP 1 Score: 150.599 bits (379), Expect = 8.088e-41
Identity = 68/88 (77.27%), Postives = 77/88 (87.50%), Query Frame = 1 
Query:  601 PKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKKKVEN 864
            PKRLH+SNIPFRFR+ DLRQ+ G +G ILDVEIIFNERGSKGFGFVTF T  +A++ARE LNGTIVEGRKIE+NNATARV+T KK  N
Sbjct:   98 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVMTNKKTGN 185
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Human
Match: RBFOX3 (RNA binding fox-1 homolog 3 [Source:HGNC Symbol;Acc:HGNC:27097])

HSP 1 Score: 150.984 bits (380), Expect = 1.149e-40
Identity = 68/88 (77.27%), Postives = 77/88 (87.50%), Query Frame = 1 
Query:  601 PKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKKKVEN 864
            PKRLH+SNIPFRFR+ DLRQ+ G +G ILDVEIIFNERGSKGFGFVTF T  +A++ARE LNGTIVEGRKIE+NNATARV+T KK  N
Sbjct:   97 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVMTNKKTGN 184
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Human
Match: RBFOX2 (RNA binding fox-1 homolog 2 [Source:HGNC Symbol;Acc:HGNC:9906])

HSP 1 Score: 147.132 bits (370), Expect = 1.185e-40
Identity = 84/181 (46.41%), Postives = 109/181 (60.22%), Query Frame = 1 
Query:  442 NPSTQNVSLSLPTSNVTTSMVPQKIEECTSSAVEKSEAXXXXXXXXXXXXXGSPKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKKKVENSAALAMRGMRTMMPTLLPHQAALKTLAPGFGLPYQPILFA 984
            +PSTQN SL+      T        ++  + + E SE+ +            +PKRLH+SNIPFRFR+ DLRQ+ G +G ILDVEIIFNERGSKGFGFVTF    +A++ARE L+GT+VEGRKIE+NNATARV+T KK+                 + P+    K L+P  G  Y P L+A
Sbjct:   55 SPSTQNGSLTTEGGAQTDG------QQSQTQSSENSESKS------------TPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKM-----------------VTPYANGWK-LSPVVGAVYGPELYA 199
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Celegans
Match: fox-1 (Sex determination protein fox-1 [Source:UniProtKB/Swiss-Prot;Acc:Q10572])

HSP 1 Score: 125.561 bits (314), Expect = 5.620e-32
Identity = 54/84 (64.29%), Postives = 70/84 (83.33%), Query Frame = 1 
Query:  601 PKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKK 852
            PKRLH+SNIPFRFR+ DL+ +   +G + DVEIIFNERGSKGFGFVT    ++AE+AR+ L+G+++EGRKIE+N ATARV +KK
Sbjct:   93 PKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERARQELHGSMIEGRKIEVNCATARVHSKK 176
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Celegans
Match: fox-1 (Sex determination protein fox-1 [Source:UniProtKB/Swiss-Prot;Acc:Q10572])

HSP 1 Score: 126.331 bits (316), Expect = 9.053e-32
Identity = 54/84 (64.29%), Postives = 70/84 (83.33%), Query Frame = 1 
Query:  601 PKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKK 852
            PKRLH+SNIPFRFR+ DL+ +   +G + DVEIIFNERGSKGFGFVT    ++AE+AR+ L+G+++EGRKIE+N ATARV +KK
Sbjct:  152 PKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERARQELHGSMIEGRKIEVNCATARVHSKK 235
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Celegans
Match: fox-1 (Sex determination protein fox-1 [Source:UniProtKB/Swiss-Prot;Acc:Q10572])

HSP 1 Score: 126.331 bits (316), Expect = 1.247e-31
Identity = 54/84 (64.29%), Postives = 70/84 (83.33%), Query Frame = 1 
Query:  601 PKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKK 852
            PKRLH+SNIPFRFR+ DL+ +   +G + DVEIIFNERGSKGFGFVT    ++AE+AR+ L+G+++EGRKIE+N ATARV +KK
Sbjct:  182 PKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERARQELHGSMIEGRKIEVNCATARVHSKK 265
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Celegans
Match: asd-1 (RNA-binding protein ASD-1 [Source:UniProtKB/TrEMBL;Acc:G5EEW7])

HSP 1 Score: 114.775 bits (286), Expect = 6.229e-28
Identity = 49/84 (58.33%), Postives = 64/84 (76.19%), Query Frame = 1 
Query:  601 PKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKK 852
            P+RLH+SNIPF++RE DL  +    G ++DVEIIFNERGSKGFGFVT    ++A++AR   NGT +EGR++E+N AT RV  KK
Sbjct:   74 PRRLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNERGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLATQRVHNKK 157
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Celegans
Match: asd-1 (RNA-binding protein ASD-1 [Source:UniProtKB/TrEMBL;Acc:G5EEW7])

HSP 1 Score: 114.775 bits (286), Expect = 1.004e-27
Identity = 49/84 (58.33%), Postives = 64/84 (76.19%), Query Frame = 1 
Query:  601 PKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKK 852
            P+RLH+SNIPF++RE DL  +    G ++DVEIIFNERGSKGFGFVT    ++A++AR   NGT +EGR++E+N AT RV  KK
Sbjct:   99 PRRLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNERGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLATQRVHNKK 182
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Fly
Match: Rbfox1 (gene:FBgn0052062 transcript:FBtr0113419)

HSP 1 Score: 149.058 bits (375), Expect = 3.242e-38
Identity = 70/107 (65.42%), Postives = 83/107 (77.57%), Query Frame = 1 
Query:  601 PKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKKKV----------ENSAALAMRGM 891
            PKRLH+SNIPFRFR+ DLR + G +G+ILDVEIIFNERGSKGFGFVTF+   +AE+ARE L+GT+VEGRKIE+NNATARV TKK            E + A AMRG+
Sbjct:  376 PKRLHVSNIPFRFRDPDLRAMFGQFGTILDVEIIFNERGSKGFGFVTFANSNDAERARERLHGTVVEGRKIEVNNATARVQTKKVTAVPNVCVQWPEAAVAAAMRGV 482
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Fly
Match: Rbfox1 (gene:FBgn0052062 transcript:FBtr0305097)

HSP 1 Score: 149.058 bits (375), Expect = 3.533e-38
Identity = 70/107 (65.42%), Postives = 83/107 (77.57%), Query Frame = 1 
Query:  601 PKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKKKV----------ENSAALAMRGM 891
            PKRLH+SNIPFRFR+ DLR + G +G+ILDVEIIFNERGSKGFGFVTF+   +AE+ARE L+GT+VEGRKIE+NNATARV TKK            E + A AMRG+
Sbjct:  393 PKRLHVSNIPFRFRDPDLRAMFGQFGTILDVEIIFNERGSKGFGFVTFANSNDAERARERLHGTVVEGRKIEVNNATARVQTKKVTAVPNVCVQWPEAAVAAAMRGV 499
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Fly
Match: Rbfox1 (gene:FBgn0052062 transcript:FBtr0113418)

HSP 1 Score: 149.058 bits (375), Expect = 3.961e-38
Identity = 70/107 (65.42%), Postives = 83/107 (77.57%), Query Frame = 1 
Query:  601 PKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKKKV----------ENSAALAMRGM 891
            PKRLH+SNIPFRFR+ DLR + G +G+ILDVEIIFNERGSKGFGFVTF+   +AE+ARE L+GT+VEGRKIE+NNATARV TKK            E + A AMRG+
Sbjct:  376 PKRLHVSNIPFRFRDPDLRAMFGQFGTILDVEIIFNERGSKGFGFVTFANSNDAERARERLHGTVVEGRKIEVNNATARVQTKKVTAVPNVCVQWPEAAVAAAMRGV 482
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Fly
Match: Rbfox1 (gene:FBgn0052062 transcript:FBtr0305095)

HSP 1 Score: 149.058 bits (375), Expect = 4.024e-38
Identity = 70/107 (65.42%), Postives = 83/107 (77.57%), Query Frame = 1 
Query:  601 PKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKKKV----------ENSAALAMRGM 891
            PKRLH+SNIPFRFR+ DLR + G +G+ILDVEIIFNERGSKGFGFVTF+   +AE+ARE L+GT+VEGRKIE+NNATARV TKK            E + A AMRG+
Sbjct:  442 PKRLHVSNIPFRFRDPDLRAMFGQFGTILDVEIIFNERGSKGFGFVTFANSNDAERARERLHGTVVEGRKIEVNNATARVQTKKVTAVPNVCVQWPEAAVAAAMRGV 548
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Fly
Match: Rbfox1 (gene:FBgn0052062 transcript:FBtr0332985)

HSP 1 Score: 145.976 bits (367), Expect = 8.535e-38
Identity = 64/84 (76.19%), Postives = 75/84 (89.29%), Query Frame = 1 
Query:  601 PKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKK 852
            PKRLH+SNIPFRFR+ DLR + G +G+ILDVEIIFNERGSKGFGFVTF+   +AE+ARE L+GT+VEGRKIE+NNATARV TKK
Sbjct:  217 PKRLHVSNIPFRFRDPDLRAMFGQFGTILDVEIIFNERGSKGFGFVTFANSNDAERARERLHGTVVEGRKIEVNNATARVQTKK 300
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Zebrafish
Match: rbfox3b (RNA binding fox-1 homolog 3b [Source:ZFIN;Acc:ZDB-GENE-091204-46])

HSP 1 Score: 152.525 bits (384), Expect = 3.066e-43
Identity = 69/88 (78.41%), Postives = 78/88 (88.64%), Query Frame = 1 
Query:  601 PKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKKKVEN 864
            PKRLH+SNIPFRFR+ DLRQ+ G +G ILDVEIIFNERGSKGFGFVTF T  +A++ARE LNGTIVEGRKIE+NNATARV+T KKV N
Sbjct:  107 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSADADRAREKLNGTIVEGRKIEVNNATARVMTNKKVVN 194
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Zebrafish
Match: rbfox3b (RNA binding fox-1 homolog 3b [Source:ZFIN;Acc:ZDB-GENE-091204-46])

HSP 1 Score: 154.066 bits (388), Expect = 1.496e-42
Identity = 78/128 (60.94%), Postives = 90/128 (70.31%), Query Frame = 1 
Query:  601 PKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKKKVENSAALAMRGMRTMMPTLLPHQAALKTLAPGFGLPYQPILFA 984
            PKRLH+SNIPFRFR+ DLRQ+ G +G ILDVEIIFNERGSKGFGFVTF T  +A++ARE LNGTIVEGRKIE+NNATARV+T KKV N                 P+  + K L P  G  Y P L+A
Sbjct:   90 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSADADRAREKLNGTIVEGRKIEVNNATARVMTNKKVVN-----------------PYTNSWK-LNPVVGAVYAPELYA 199
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Zebrafish
Match: rbfox3a (RNA binding fox-1 homolog 3a [Source:ZFIN;Acc:ZDB-GENE-111213-1])

HSP 1 Score: 152.525 bits (384), Expect = 8.343e-42
Identity = 69/88 (78.41%), Postives = 78/88 (88.64%), Query Frame = 1 
Query:  601 PKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKKKVEN 864
            PKRLH+SNIPFRFR+ DLRQ+ G +G ILDVEIIFNERGSKGFGFVTF T  +A++ARE LNGTIVEGRKIE+NNATARV+T KKV N
Sbjct:  111 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSADADRAREKLNGTIVEGRKIEVNNATARVMTNKKVAN 198
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Zebrafish
Match: rbfox3a (RNA binding fox-1 homolog 3a [Source:ZFIN;Acc:ZDB-GENE-111213-1])

HSP 1 Score: 152.91 bits (385), Expect = 1.745e-41
Identity = 69/88 (78.41%), Postives = 78/88 (88.64%), Query Frame = 1 
Query:  601 PKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKKKVEN 864
            PKRLH+SNIPFRFR+ DLRQ+ G +G ILDVEIIFNERGSKGFGFVTF T  +A++ARE LNGTIVEGRKIE+NNATARV+T KKV N
Sbjct:  152 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSADADRAREKLNGTIVEGRKIEVNNATARVMTNKKVAN 239
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Zebrafish
Match: rbfox3a (RNA binding fox-1 homolog 3a [Source:ZFIN;Acc:ZDB-GENE-111213-1])

HSP 1 Score: 152.14 bits (383), Expect = 3.314e-41
Identity = 69/88 (78.41%), Postives = 78/88 (88.64%), Query Frame = 1 
Query:  601 PKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKKKVEN 864
            PKRLH+SNIPFRFR+ DLRQ+ G +G ILDVEIIFNERGSKGFGFVTF T  +A++ARE LNGTIVEGRKIE+NNATARV+T KKV N
Sbjct:  158 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSADADRAREKLNGTIVEGRKIEVNNATARVMTNKKVAN 245
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Xenopus
Match: yaf2 (YY1 associated factor 2 [Source:Xenbase;Acc:XB-GENE-949941])

HSP 1 Score: 149.058 bits (375), Expect = 1.468e-40
Identity = 68/88 (77.27%), Postives = 77/88 (87.50%), Query Frame = 1 
Query:  601 PKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKKKVEN 864
            PKRLH+SNIPFRFR+ DLRQ+ G +G ILDVEIIFNERGSKGFGFVTF T  +A++ARE LNGTIVEGRKIE+NNATARV+T KK  N
Sbjct:   97 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSMDADRAREKLNGTIVEGRKIEVNNATARVMTNKKPVN 184
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Xenopus
Match: yaf2 (YY1 associated factor 2 [Source:Xenbase;Acc:XB-GENE-949941])

HSP 1 Score: 149.443 bits (376), Expect = 3.298e-40
Identity = 68/88 (77.27%), Postives = 77/88 (87.50%), Query Frame = 1 
Query:  601 PKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKKKVEN 864
            PKRLH+SNIPFRFR+ DLRQ+ G +G ILDVEIIFNERGSKGFGFVTF T  +A++ARE LNGTIVEGRKIE+NNATARV+T KK  N
Sbjct:  142 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSMDADRAREKLNGTIVEGRKIEVNNATARVMTNKKPVN 229
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Xenopus
Match: yaf2 (YY1 associated factor 2 [Source:Xenbase;Acc:XB-GENE-949941])

HSP 1 Score: 149.443 bits (376), Expect = 3.905e-40
Identity = 68/88 (77.27%), Postives = 77/88 (87.50%), Query Frame = 1 
Query:  601 PKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKKKVEN 864
            PKRLH+SNIPFRFR+ DLRQ+ G +G ILDVEIIFNERGSKGFGFVTF T  +A++ARE LNGTIVEGRKIE+NNATARV+T KK  N
Sbjct:  142 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSMDADRAREKLNGTIVEGRKIEVNNATARVMTNKKPVN 229
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Xenopus
Match: slc25a39 (solute carrier family 25 member 39 [Source:Xenbase;Acc:XB-GENE-969813])

HSP 1 Score: 148.673 bits (374), Expect = 1.243e-39
Identity = 74/131 (56.49%), Postives = 91/131 (69.47%), Query Frame = 1 
Query:  598 SPKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKKKVENSAALAMRGMRTMMPTLLPHQAALKTLAPGFGLPYQPILFADP 990
            +PKRLH+SNIPFRFR+ DLRQ+ G +G ILDVEIIFNERGSKGFGFVTF T  +A++ARE L+ T+VEGRKIE+NNATARV+T KK                 ++ P+    K L+P  G  Y P L+A P
Sbjct:  171 TPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSADADRAREKLHSTVVEGRKIEVNNATARVMTNKK-----------------SVTPYGNGWK-LSPVVGAVYGPELYAVP 283
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Xenopus
Match: lsm12 (LSM12 homolog [Source:Xenbase;Acc:XB-GENE-5780031])

HSP 1 Score: 147.902 bits (372), Expect = 1.318e-39
Identity = 75/130 (57.69%), Postives = 88/130 (67.69%), Query Frame = 1 
Query:  601 PKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKKKVENSAALAMRGMRTMMPTLLPHQAALKTLAPGFGLPYQPILFADP 990
            PKRLH+SNIPFRFR+ DLRQ+ G +G ILDVEIIFNERGSKGFGFVTF    +A++ARE L+GT+VEGRKIE+NNATARV+T KK                 TL P+    K L P  G  Y P  +A P
Sbjct:   96 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKK-----------------TLNPYTNGWK-LNPVVGAVYSPEFYAVP 207
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Mouse
Match: Rbfox3 (RNA binding protein, fox-1 homolog (C. elegans) 3 [Source:MGI Symbol;Acc:MGI:106368])

HSP 1 Score: 150.214 bits (378), Expect = 5.394e-41
Identity = 69/91 (75.82%), Postives = 78/91 (85.71%), Query Frame = 1 
Query:  601 PKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKKKVENSAA 873
            PKRLH+SNIPFRFR+ DLRQ+ G +G ILDVEIIFNERGSKGFGFVTF T  +A++ARE LNGTIVEGRKIE+NNATARV+T KK  N  A
Sbjct:   98 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVMTNKKPGNPYA 188
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Mouse
Match: Rbfox3 (RNA binding protein, fox-1 homolog (C. elegans) 3 [Source:MGI Symbol;Acc:MGI:106368])

HSP 1 Score: 150.214 bits (378), Expect = 5.394e-41
Identity = 69/91 (75.82%), Postives = 78/91 (85.71%), Query Frame = 1 
Query:  601 PKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKKKVENSAA 873
            PKRLH+SNIPFRFR+ DLRQ+ G +G ILDVEIIFNERGSKGFGFVTF T  +A++ARE LNGTIVEGRKIE+NNATARV+T KK  N  A
Sbjct:   98 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVMTNKKPGNPYA 188
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Mouse
Match: Rbfox3 (RNA binding protein, fox-1 homolog (C. elegans) 3 [Source:MGI Symbol;Acc:MGI:106368])

HSP 1 Score: 150.214 bits (378), Expect = 7.924e-41
Identity = 69/91 (75.82%), Postives = 78/91 (85.71%), Query Frame = 1 
Query:  601 PKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKKKVENSAA 873
            PKRLH+SNIPFRFR+ DLRQ+ G +G ILDVEIIFNERGSKGFGFVTF T  +A++ARE LNGTIVEGRKIE+NNATARV+T KK  N  A
Sbjct:   98 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVMTNKKPGNPYA 188
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Mouse
Match: Rbfox3 (RNA binding protein, fox-1 homolog (C. elegans) 3 [Source:MGI Symbol;Acc:MGI:106368])

HSP 1 Score: 150.599 bits (379), Expect = 9.709e-41
Identity = 69/91 (75.82%), Postives = 78/91 (85.71%), Query Frame = 1 
Query:  601 PKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKKKVENSAA 873
            PKRLH+SNIPFRFR+ DLRQ+ G +G ILDVEIIFNERGSKGFGFVTF T  +A++ARE LNGTIVEGRKIE+NNATARV+T KK  N  A
Sbjct:   98 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVMTNKKPGNPYA 188
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Mouse
Match: Rbfox3 (RNA binding protein, fox-1 homolog (C. elegans) 3 [Source:MGI Symbol;Acc:MGI:106368])

HSP 1 Score: 150.984 bits (380), Expect = 1.221e-40
Identity = 69/91 (75.82%), Postives = 78/91 (85.71%), Query Frame = 1 
Query:  601 PKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKKKVENSAA 873
            PKRLH+SNIPFRFR+ DLRQ+ G +G ILDVEIIFNERGSKGFGFVTF T  +A++ARE LNGTIVEGRKIE+NNATARV+T KK  N  A
Sbjct:   98 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVMTNKKPGNPYA 188
[Close]
BLAST of RNA binding protein fox-1 vs. UniProt/SwissProt
Match: sp|A6NFN3|RFOX3_HUMAN (RNA binding protein fox-1 homolog 3 OS=Homo sapiens OX=9606 GN=RBFOX3 PE=2 SV=4)

HSP 1 Score: 150.214 bits (378), Expect = 3.391e-40
Identity = 68/88 (77.27%), Postives = 77/88 (87.50%), Query Frame = 1 
Query:  601 PKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKKKVEN 864
            PKRLH+SNIPFRFR+ DLRQ+ G +G ILDVEIIFNERGSKGFGFVTF T  +A++ARE LNGTIVEGRKIE+NNATARV+T KK  N
Sbjct:   98 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVMTNKKTGN 185
[Close]
BLAST of RNA binding protein fox-1 vs. UniProt/SwissProt
Match: sp|Q8BIF2|RFOX3_MOUSE (RNA binding protein fox-1 homolog 3 OS=Mus musculus OX=10090 GN=Rbfox3 PE=1 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 8.538e-40
Identity = 69/91 (75.82%), Postives = 78/91 (85.71%), Query Frame = 1 
Query:  601 PKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKKKVENSAA 873
            PKRLH+SNIPFRFR+ DLRQ+ G +G ILDVEIIFNERGSKGFGFVTF T  +A++ARE LNGTIVEGRKIE+NNATARV+T KK  N  A
Sbjct:   98 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVMTNKKPGNPYA 188
[Close]
BLAST of RNA binding protein fox-1 vs. UniProt/SwissProt
Match: sp|Q7ZT82|RFX1L_DANRE (RNA binding protein fox-1 homolog 1-like OS=Danio rerio OX=7955 GN=rbfox1l PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 2.061e-39
Identity = 67/84 (79.76%), Postives = 76/84 (90.48%), Query Frame = 1 
Query:  601 PKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKK 852
            PKRLH+SNIPFRFR+ DLRQ+ G +G ILDVEIIFNERGSKGFGFVTF +  EA++ARE LNGTIVEGRKIE+NNATARV+TKK
Sbjct:  146 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFESAVEADRAREKLNGTIVEGRKIEVNNATARVVTKK 229
[Close]
BLAST of RNA binding protein fox-1 vs. UniProt/SwissProt
Match: sp|A4F5G6|RFOX2_XENLA (RNA binding protein fox-1 homolog 2 OS=Xenopus laevis OX=8355 GN=rbfox2 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 8.668e-39
Identity = 75/131 (57.25%), Postives = 91/131 (69.47%), Query Frame = 1 
Query:  598 SPKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKKKVENSAALAMRGMRTMMPTLLPHQAALKTLAPGFGLPYQPILFADP 990
            SPKRLH+SNIPFRFR+ DLRQ+ G +G ILDVEIIFNERGSKGFGFVTF T  +A++ARE L+ T+VEGRKIE+NNATARV+T KK                 ++ P+    K L+P  G  Y P L+A P
Sbjct:  171 SPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSADADRAREKLHSTVVEGRKIEVNNATARVMTNKK-----------------SVTPYGNGWK-LSPVVGAVYGPELYAVP 283
[Close]
BLAST of RNA binding protein fox-1 vs. UniProt/SwissProt
Match: sp|Q642J5|RFOX1_DANRE (RNA binding protein fox-1 homolog 1 OS=Danio rerio OX=7955 GN=rbfox1 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.677e-38
Identity = 66/91 (72.53%), Postives = 78/91 (85.71%), Query Frame = 1 
Query:  601 PKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKKKVENSAA 873
            PKRLH+SNIPFRFR+ DLRQ+ G +G ILDVEIIFNERGSKGFGFVTF +  +A++ARE L+GT+VEGRKIE+NNATARV+T KK  N  A
Sbjct:  118 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFESSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYA 208
[Close]
BLAST of RNA binding protein fox-1 vs. TrEMBL
Match: A0A4S2L0M9 (RRM domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_010206 PE=4 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.569e-47
Identity = 90/131 (68.70%), Postives = 106/131 (80.92%), Query Frame = 1 
Query:  601 PKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKKKVENSAAL----AMRGMRTMMPTLLPHQAALKTLAPGF--GLPYQPI 975
            PKRLH+SNIPFRFRE+DLRQLLG +G+ILDVEIIFNERGSKGFGFVTF+T EEA++ARENLNGT+VEGRKIEINNATARV+TKKK E   +L     +RG+RT++P+     AA+   A G   GLP  PI
Sbjct:  239 PKRLHVSNIPFRFREADLRQLLGSFGTILDVEIIFNERGSKGFGFVTFATSEEADRARENLNGTVVEGRKIEINNATARVMTKKKSETPTSLRTSTTVRGVRTLVPSTTAALAAVIRNAAGLNAGLPIAPI 369
[Close]
BLAST of RNA binding protein fox-1 vs. TrEMBL
Match: A0A4S2L6P9 (RRM domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_010206 PE=4 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.818e-47
Identity = 90/131 (68.70%), Postives = 106/131 (80.92%), Query Frame = 1 
Query:  601 PKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKKKVENSAAL----AMRGMRTMMPTLLPHQAALKTLAPGF--GLPYQPI 975
            PKRLH+SNIPFRFRE+DLRQLLG +G+ILDVEIIFNERGSKGFGFVTF+T EEA++ARENLNGT+VEGRKIEINNATARV+TKKK E   +L     +RG+RT++P+     AA+   A G   GLP  PI
Sbjct:  239 PKRLHVSNIPFRFREADLRQLLGSFGTILDVEIIFNERGSKGFGFVTFATSEEADRARENLNGTVVEGRKIEINNATARVMTKKKSETPTSLRTSTTVRGVRTLVPSTTAALAAVIRNAAGLNAGLPIAPI 369
[Close]
BLAST of RNA binding protein fox-1 vs. TrEMBL
Match: G7YJQ9 (RNA binding protein fox-1 OS=Clonorchis sinensis OX=79923 GN=CLF_109737 PE=4 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.731e-47
Identity = 90/131 (68.70%), Postives = 106/131 (80.92%), Query Frame = 1 
Query:  601 PKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKKKVENSAAL----AMRGMRTMMPTLLPHQAALKTLAPGF--GLPYQPI 975
            PKRLH+SNIPFRFRE+DLRQLLG +G+ILDVEIIFNERGSKGFGFVTF+T EEA++ARENLNGT+VEGRKIEINNATARV+TKKK E   +L     +RG+RT++P+     AA+   A G   GLP  PI
Sbjct:  239 PKRLHVSNIPFRFREADLRQLLGSFGTILDVEIIFNERGSKGFGFVTFATSEEADRARENLNGTVVEGRKIEINNATARVMTKKKSETPTSLRTSTTVRGVRTLVPSTTAALAAVIRNAAGLNAGLPIAPI 369
[Close]
BLAST of RNA binding protein fox-1 vs. TrEMBL
Match: A0A1S8WHU8 (RRM domain-containing protein OS=Opisthorchis viverrini OX=6198 GN=X801_10220 PE=4 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.246e-47
Identity = 90/131 (68.70%), Postives = 106/131 (80.92%), Query Frame = 1 
Query:  601 PKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKKKVENSAAL----AMRGMRTMMPTLLPHQAALKTLAPGF--GLPYQPI 975
            PKRLH+SNIPFRFRE+DLRQLLG +G+ILDVEIIFNERGSKGFGFVTF+T EEA++ARENLNGT+VEGRKIEINNATARV+TKKK E   +L     +RG+RT++P+     AA+   A G   GLP  PI
Sbjct:  297 PKRLHVSNIPFRFREADLRQLLGSFGTILDVEIIFNERGSKGFGFVTFATSEEADRARENLNGTVVEGRKIEINNATARVMTKKKSETPTSLRTSTTVRGVRTLVPSTTAALAAVIRNAAGLNAGLPIAPI 427
[Close]
BLAST of RNA binding protein fox-1 vs. TrEMBL
Match: A0A4S2L1Y3 (RRM domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_010206 PE=4 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 7.314e-47
Identity = 90/131 (68.70%), Postives = 106/131 (80.92%), Query Frame = 1 
Query:  601 PKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKKKVENSAAL----AMRGMRTMMPTLLPHQAALKTLAPGF--GLPYQPI 975
            PKRLH+SNIPFRFRE+DLRQLLG +G+ILDVEIIFNERGSKGFGFVTF+T EEA++ARENLNGT+VEGRKIEINNATARV+TKKK E   +L     +RG+RT++P+     AA+   A G   GLP  PI
Sbjct:  239 PKRLHVSNIPFRFREADLRQLLGSFGTILDVEIIFNERGSKGFGFVTFATSEEADRARENLNGTVVEGRKIEINNATARVMTKKKSETPTSLRTSTTVRGVRTLVPSTTAALAAVIRNAAGLNAGLPIAPI 369
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Cavefish
Match: rbfox3b (RNA binding fox-1 homolog 3b [Source:ZFIN;Acc:ZDB-GENE-091204-46])

HSP 1 Score: 155.992 bits (393), Expect = 7.053e-43
Identity = 80/149 (53.69%), Postives = 101/149 (67.79%), Query Frame = 1 
Query:  427 NPTITNPSTQNVSL---SLPTSNVTTSMVPQKIEECTSSAVEKSEAXXXXXXXXXXXXXGSPKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKKKVEN 864
            +PT  + +T  ++    S PT +VT +   Q++   +S + EK +                PKRLH+SNIPFRFR+ DLRQ+ G +G ILDVEIIFNERGSKGFGFVTF T  +A++ARE LNGTIVEGRKIE+NNATARV+T KK  N
Sbjct:   93 DPTANDSTTPTITANTNSAPTDDVTQTESSQQLTLQSSDSPEKQQ----------------PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSTDADRAREKLNGTIVEGRKIEVNNATARVMTNKKAAN 225
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Cavefish
Match: rbfox3b (RNA binding fox-1 homolog 3b [Source:ZFIN;Acc:ZDB-GENE-091204-46])

HSP 1 Score: 155.606 bits (392), Expect = 2.935e-42
Identity = 80/149 (53.69%), Postives = 101/149 (67.79%), Query Frame = 1 
Query:  427 NPTITNPSTQNVSL---SLPTSNVTTSMVPQKIEECTSSAVEKSEAXXXXXXXXXXXXXGSPKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKKKVEN 864
            +PT  + +T  ++    S PT +VT +   Q++   +S + EK +                PKRLH+SNIPFRFR+ DLRQ+ G +G ILDVEIIFNERGSKGFGFVTF T  +A++ARE LNGTIVEGRKIE+NNATARV+T KK  N
Sbjct:  142 DPTANDSTTPTITANTNSAPTDDVTQTESSQQLTLQSSDSPEKQQ----------------PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSTDADRAREKLNGTIVEGRKIEVNNATARVMTNKKAAN 274
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Cavefish
Match: rbfox3a (RNA binding fox-1 homolog 3a [Source:ZFIN;Acc:ZDB-GENE-111213-1])

HSP 1 Score: 152.91 bits (385), Expect = 5.666e-42
Identity = 81/145 (55.86%), Postives = 98/145 (67.59%), Query Frame = 1 
Query:  430 PTITNPSTQNVSLSLPTSNVTTSMVPQKIEECTSSAVEKSEAXXXXXXXXXXXXXGSPKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKKKVEN 864
            PT T+        S P S   TS +PQ  E   + A ++ +    + +         PKRLH+SNIPFRFR+ DLRQ+ G +G ILDVEIIFNERGSKGFGFVTF T  +A++ARE LNGTIVEGRKIE+NNATARV+T KKV N
Sbjct:   65 PTQTHSEPPGTDSSTP-SLTGTSSIPQADEVAQTDASQQLQLQPSDSSEKQ-----QPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSADADRAREKLNGTIVEGRKIEVNNATARVMTNKKVAN 203
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Cavefish
Match: rbfox3a (RNA binding fox-1 homolog 3a [Source:ZFIN;Acc:ZDB-GENE-111213-1])

HSP 1 Score: 152.525 bits (384), Expect = 1.529e-41
Identity = 75/124 (60.48%), Postives = 91/124 (73.39%), Query Frame = 1 
Query:  493 TSMVPQKIEECTSSAVEKSEAXXXXXXXXXXXXXGSPKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKKKVEN 864
            TS +PQ  E   + A ++ +    + +         PKRLH+SNIPFRFR+ DLRQ+ G +G ILDVEIIFNERGSKGFGFVTF T  +A++ARE LNGTIVEGRKIE+NNATARV+T KKV N
Sbjct:  127 TSSIPQADEVAQTDASQQLQLQPSDSSEKQ-----QPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSADADRAREKLNGTIVEGRKIEVNNATARVMTNKKVAN 245
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Cavefish
Match: rbfox3a (RNA binding fox-1 homolog 3a [Source:ZFIN;Acc:ZDB-GENE-111213-1])

HSP 1 Score: 152.91 bits (385), Expect = 1.554e-41
Identity = 69/88 (78.41%), Postives = 78/88 (88.64%), Query Frame = 1 
Query:  601 PKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKKKVEN 864
            PKRLH+SNIPFRFR+ DLRQ+ G +G ILDVEIIFNERGSKGFGFVTF T  +A++ARE LNGTIVEGRKIE+NNATARV+T KKV N
Sbjct:  153 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSADADRAREKLNGTIVEGRKIEVNNATARVMTNKKVAN 240
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Sea Lamprey
Match: rbfox3b (RNA binding fox-1 homolog 3b [Source:ZFIN;Acc:ZDB-GENE-091204-46])

HSP 1 Score: 72.4034 bits (176), Expect = 5.386e-15
Identity = 32/48 (66.67%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:  721 KGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKKKVEN 864
            +GFGFVTF    +A++ARE L+GT+VEGRKIE+NNATARV+T KK  N
Sbjct:    2 QGFGFVTFENSADADRAREKLHGTMVEGRKIEVNNATARVMTNKKAVN 49
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Sea Lamprey
Match: pabpc4 (poly(A) binding protein, cytoplasmic 4 (inducible form) [Source:ZFIN;Acc:ZDB-GENE-030131-9663])

HSP 1 Score: 60.4622 bits (145), Expect = 5.165e-10
Identity = 39/122 (31.97%), Postives = 63/122 (51.64%), Query Frame = 1 
Query:  610 LHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKKKVENSAALAMRGMRTMMPTLLPHQAALKTLAP-GFGLPYQP 972
            L++ N+     +  LR+   PYG+I   +++  E  SKGFGFV FS+ EEA KA   +NG IV  + + +  A  +   K  + +     + GMR + P+ +  Q   +  AP G+ +P  P
Sbjct:  299 LYVKNLDDNIDDEQLRKEFAPYGTITSTKVMSEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTSQYMQRIAGMRALPPSTVIGQ--YQPAAPSGYFMPAMP 418

HSP 2 Score: 52.7582 bits (125), Expect = 1.343e-7
Identity = 31/93 (33.33%), Postives = 49/93 (52.69%), Query Frame = 1 
Query:  610 LHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERG-SKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKKKVENSAALAMR 885
            ++I N      E  LR+  G +G  L V ++ +E G S+GFGFV+F   E+A++A   +NG  + GR + +  A      +KK E  A L  +
Sbjct:  196 VYIKNFGDDMDEDKLREFFGKFGKALSVCVMSDECGKSRGFGFVSFEQHEDAQRAVNEMNGKELNGRTVFVGRA------QKKGERQAELKRK 282

HSP 3 Score: 48.1358 bits (113), Expect = 3.011e-6
Identity = 19/45 (42.22%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:  673 YGSILDVEIIFNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGR 807
            +G+IL  +++ +E GS+G+GFV F T E A++A E +NG ++  R
Sbjct:  122 FGNILSCKVVCDENGSRGYGFVHFETQEAADRAIEKMNGMLLNDR 166
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Sea Lamprey
Match: RBM39 (RNA binding motif protein 39 [Source:HGNC Symbol;Acc:HGNC:15923])

HSP 1 Score: 58.5362 bits (140), Expect = 2.057e-9
Identity = 30/76 (39.47%), Postives = 51/76 (67.11%), Query Frame = 1 
Query:  601 PKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFN-ERG-SKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEIN 822
            P RL++ ++ F   E+ L  +  P+G I +++++ + E G SKGFGF+TFS+ + A+KA E LNG  + GR +++N
Sbjct:  271 PMRLYVGSLHFNITEAMLMGIFEPFGKIDNIQLMMDPETGRSKGFGFITFSSADCAKKALEQLNGFELAGRPMKVN 346
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Sea Lamprey
Match: BOLL (boule homolog, RNA binding protein [Source:HGNC Symbol;Acc:HGNC:14273])

HSP 1 Score: 57.3806 bits (137), Expect = 2.078e-9
Identity = 29/87 (33.33%), Postives = 52/87 (59.77%), Query Frame = 1 
Query:  601 PKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERG-SKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKKKV 858
            P R+ +  I F+  E++L++    +G + DV+II +  G SKG+GFVTF + E+A+K ++     + + +K+ I  A    I K++V
Sbjct:   41 PNRIFVGGIDFKVNEAELKKYFTQFGVVKDVKIINDRAGVSKGYGFVTFESQEDAQKIQQEAEKIMYKDKKLNIGPA----IRKQQV 123
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Sea Lamprey
Match: RBM39 (RNA binding motif protein 39 [Source:HGNC Symbol;Acc:HGNC:15923])

HSP 1 Score: 56.6102 bits (135), Expect = 6.496e-9
Identity = 28/81 (34.57%), Postives = 48/81 (59.26%), Query Frame = 1 
Query:  601 PKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNER--GSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATAR 837
            P RL++ ++ F   E  L+ +  P+G I + +++ +     S+G+GFVTF+  E A KA E LNG  + GR +++ + T R
Sbjct:  258 PMRLYVGSLHFNITEDMLKGIFEPFGKIENCQLMMDSDTGRSRGYGFVTFADAECARKALEQLNGFELAGRPMKVGHVTER 338
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Yeast
Match: PAB1 (Poly(A) binding protein; part of the 3'-end RNA-processing complex, mediates interactions between the 5' cap structure and the 3' mRNA poly(A) tail, involved in control of poly(A) tail length, interacts with translation factor eIF-4G; stimulates, but is not required for the deadenylation activity of the Pan2p-Pan3p poly(A)-ribonuclease complex [Source:SGD;Acc:S000000967])

HSP 1 Score: 50.447 bits (119), Expect = 4.112e-7
Identity = 29/84 (34.52%), Postives = 45/84 (53.57%), Query Frame = 1 
Query:  610 LHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERG-SKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKKKV 858
            L + N+     +  L +   PYG+I   +++  E G SKGFGFV FST EEA KA    N  IV G+ + +  A  + + + ++
Sbjct:  324 LFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQL 407
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Yeast
Match: MRD1 (Essential conserved small ribosomal subunit (40s) synthesis factor; component of the 90S preribosome; required for production of 18S rRNA and small ribosomal subunit; contains five consensus RNA-binding domains and binds to the pre-rRNA at two sites within the 18S region [Source:SGD;Acc:S000006316])

HSP 1 Score: 49.2914 bits (116), Expect = 1.225e-6
Identity = 49/195 (25.13%), Postives = 78/195 (40.00%), Query Frame = 1 
Query:  448 STQNVSLSLPTSNVTTSMVPQKIEECTSSAVEKSEAXXXXXXXXXXXXXGSPKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNER--GSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEI----NNATARV---------ITKKKVENSAALAMRGMRTMMPTLLPHQAALKTLAPGFGLPYQPILFAD 987
            + QN SL           VPQK +E    A+EK               +    RL + NI +  +E D R+L  P+G + +V +  + R   SKGF +V F   + A  A   L+  I +GR + I       + R+         + K+K     A A R   +     +   A L ++A   GL    ++ A+
Sbjct:  310 TEQNESLDTKKEEQPERAVPQKTDE--ELAIEK---------------INQTGRLFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSKGFAYVLFKDSKNAVNAYVELDKQIFQGRLLHILPGEEKKSHRLDEFDLKNMPLKKQKELKRKAAASRQTFSWNSLYMNQDAVLGSVAAKLGLEKSQLIDAE 487
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Nematostella
Match: EDO44890 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RUE7])

HSP 1 Score: 119.783 bits (299), Expect = 4.836e-33
Identity = 54/73 (73.97%), Postives = 65/73 (89.04%), Query Frame = 1 
Query:  601 PKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEI 819
            PKRLH++NIPFRFR++DLRQ+ G +G I DVEII+NERGSKGFGFVTF+T  EA KARE LNGTIV+GRK+E+
Sbjct:    9 PKRLHVTNIPFRFRDNDLRQMFGSFGVIADVEIIYNERGSKGFGFVTFNTAAEANKAREKLNGTIVDGRKVEV 81
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Nematostella
Match: EDO29715 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T2V2])

HSP 1 Score: 56.6102 bits (135), Expect = 1.597e-10
Identity = 33/76 (43.42%), Postives = 45/76 (59.21%), Query Frame = 1 
Query:  610 LHISNIPFRFRESDLRQLLGPYGSILDVEII---FNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNA 828
            + + ++PF   E+DLR     YG++  V+II   F  R SKGFGFV      EA+KA + LNG  VEGR I +N +
Sbjct:    3 IFVGSLPFSIEEADLRGFFEEYGAVDSVKIISDKFTGR-SKGFGFVEMPNDAEAQKAIDELNGGTVEGRTIVVNKS 77
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Nematostella
Match: EDO33206 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SSV8])

HSP 1 Score: 56.9954 bits (136), Expect = 1.046e-8
Identity = 38/126 (30.16%), Postives = 65/126 (51.59%), Query Frame = 1 
Query:  610 LHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERG-SKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKKKVENSAALAMRGMRTMMPTLLPHQA-------ALKTLAPGFGLP 963
            L+I N+     +  LR+   PYG+I   +++ +++G SKGFGFV FS+ EEA KA   +NG I+  + + +       + +++ E  A LA + M   +  L  HQ         +  + P +G+P
Sbjct:  299 LYIKNLDDPIDDERLREEFSPYGTISSAKVMKDDKGNSKGFGFVCFSSPEEATKAVTEMNGRILISKPLYV------ALAQRREERKAQLAAQHMHR-ISGLRMHQGQRPFFTPQMPQVRPRWGMP 417

HSP 2 Score: 49.6766 bits (117), Expect = 2.142e-6
Identity = 28/90 (31.11%), Postives = 50/90 (55.56%), Query Frame = 1 
Query:  610 LHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERG-SKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKKKVENSAAL 876
            +++ N      +  ++++    G I+ ++++ +  G SKGFGFV+F T EEAE+A   LNG  + GR++    A      KK+ E +A +
Sbjct:  196 VYVKNFGDDMDDEQMKEICAEAGKIVSLKVMTDPEGKSKGFGFVSFETPEEAEEAVNVLNGKEIGGRRLWAGRA------KKRAERAAEV 279
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Nematostella
Match: EDO33926 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SQW0])

HSP 1 Score: 56.6102 bits (135), Expect = 1.322e-8
Identity = 27/81 (33.33%), Postives = 49/81 (60.49%), Query Frame = 1 
Query:  601 PKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNER--GSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATAR 837
            P RL++ ++ F   E+ ++ +  P+G++  V++I++     SKG+GFV F   E A++A E +NG  + GR ++I   T R
Sbjct:  214 PTRLYVGSLHFNITEAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQFREAEAAKRAMEQMNGFELAGRPLKIGPVTER 294
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Nematostella
Match: EDO35154 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SMB0])

HSP 1 Score: 50.0618 bits (118), Expect = 1.257e-7
Identity = 26/83 (31.33%), Postives = 46/83 (55.42%), Query Frame = 1 
Query:  595 GSPKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERGSK--GFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATAR 837
            G   + +I N+ F+  E+DL+     Y  ++DV++I +    +  GF FVTF + +  E A   L+G   +GR +++N A +R
Sbjct:    2 GEECKCYIGNLDFKVNEADLQDRFSRY-DVVDVQVISDRETQRPRGFAFVTFGSKKNMEDAINELDGQEFDGRSMKVNQARSR 83
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Medaka
Match: rbfox3b (RNA binding fox-1 homolog 3 [Source:NCBI gene;Acc:101159826])

HSP 1 Score: 155.606 bits (392), Expect = 7.742e-42
Identity = 78/135 (57.78%), Postives = 95/135 (70.37%), Query Frame = 1 
Query:  460 VSLSLPTSNVTTSMVPQKIEECTSSAVEKSEAXXXXXXXXXXXXXGSPKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKKKVEN 864
             S + PT +VT +   Q+++   S + EK +                PKRLH+SNIPFRFR+ DLRQ+ G +G ILDVEIIFNERGSKGFGFVTF T  +A++ARE LNGTIVEGRKIE+NNATARV+T KKV N
Sbjct:  216 ASTTAPTDDVTQTEGSQQLQLQHSDSSEKQQ----------------PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSTDADRAREKLNGTIVEGRKIEVNNATARVMTNKKVAN 334
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Medaka
Match: rbfox3b (RNA binding fox-1 homolog 3 [Source:NCBI gene;Acc:101159826])

HSP 1 Score: 156.377 bits (394), Expect = 1.787e-41
Identity = 78/135 (57.78%), Postives = 95/135 (70.37%), Query Frame = 1 
Query:  460 VSLSLPTSNVTTSMVPQKIEECTSSAVEKSEAXXXXXXXXXXXXXGSPKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKKKVEN 864
             S + PT +VT +   Q+++   S + EK +                PKRLH+SNIPFRFR+ DLRQ+ G +G ILDVEIIFNERGSKGFGFVTF T  +A++ARE LNGTIVEGRKIE+NNATARV+T KKV N
Sbjct:  298 ASTTAPTDDVTQTEGSQQLQLQHSDSSEKQQ----------------PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSTDADRAREKLNGTIVEGRKIEVNNATARVMTNKKVAN 416
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Medaka
Match: rbfox3b (RNA binding fox-1 homolog 3 [Source:NCBI gene;Acc:101159826])

HSP 1 Score: 155.606 bits (392), Expect = 1.987e-41
Identity = 78/135 (57.78%), Postives = 95/135 (70.37%), Query Frame = 1 
Query:  460 VSLSLPTSNVTTSMVPQKIEECTSSAVEKSEAXXXXXXXXXXXXXGSPKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKKKVEN 864
             S + PT +VT +   Q+++   S + EK +                PKRLH+SNIPFRFR+ DLRQ+ G +G ILDVEIIFNERGSKGFGFVTF T  +A++ARE LNGTIVEGRKIE+NNATARV+T KKV N
Sbjct:  279 ASTTAPTDDVTQTEGSQQLQLQHSDSSEKQQ----------------PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSTDADRAREKLNGTIVEGRKIEVNNATARVMTNKKVAN 397
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Medaka
Match: rbfox3b (RNA binding fox-1 homolog 3 [Source:NCBI gene;Acc:101159826])

HSP 1 Score: 156.377 bits (394), Expect = 2.190e-41
Identity = 78/135 (57.78%), Postives = 95/135 (70.37%), Query Frame = 1 
Query:  460 VSLSLPTSNVTTSMVPQKIEECTSSAVEKSEAXXXXXXXXXXXXXGSPKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKKKVEN 864
             S + PT +VT +   Q+++   S + EK +                PKRLH+SNIPFRFR+ DLRQ+ G +G ILDVEIIFNERGSKGFGFVTF T  +A++ARE LNGTIVEGRKIE+NNATARV+T KKV N
Sbjct:  298 ASTTAPTDDVTQTEGSQQLQLQHSDSSEKQQ----------------PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSTDADRAREKLNGTIVEGRKIEVNNATARVMTNKKVAN 416
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Medaka
Match: rbfox2 (RNA binding protein fox-1 homolog 2 [Source:NCBI gene;Acc:101157754])

HSP 1 Score: 150.984 bits (380), Expect = 1.017e-40
Identity = 77/136 (56.62%), Postives = 93/136 (68.38%), Query Frame = 1 
Query:  595 GSPKRLHISNIPFRFRESDLRQLLGPYGSILDVEIIFNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVITKKKV-------ENSAALAMRGMRTMMPTLLPHQAALKTLAPGFGLPYQPILF 981
            G+PKRLH+SNIPFRFR+ DLRQ+ G +G ILDVEIIFNERGSKGFGFVTF +  +AE+ARE L+GT+VEGRKIE+NNATARV+T KK+       E  AAL   G +               L+P  G  Y P L+
Sbjct:  110 GTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFESSADAERAREKLHGTLVEGRKIEVNNATARVMTNKKITTPYSNGEGLAALPYAGWK---------------LSPMVGAMYSPELY 230
[Close]
BLAST of RNA binding protein fox-1 vs. Planmine SMEST
Match: SMESG000048633.1 (SMESG000048633.1)

HSP 1 Score: 281.182 bits (718), Expect = 2.590e-93
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 1 
Query:  142 MLSSDNGGGFYPSSASLNFQQPTENGTDSKQSKTQWGXXXXXXXXXXXXXXXXXXXXPMFQFTGFPLGYQQATLGDPFGLINFDQAKSAITSLGVNPTITNPSTQNVSLSLPTSNVTTSMVPQKIEECTSSAVEKSEAXXXXXXXXXXXXXGSPKRLHISNIPFRFRESDLRQLLG 669
            MLSSDNGGGFYPSSASLNFQQPTENGTDSKQSKTQWGLSSMSSAASLDMASSLFSAAPMFQFTGFPLGYQQATLGDPFGLINFDQAKSAITSLGVNPTITNPSTQNVSLSLPTSNVTTSMVPQKIEECTSSAVEKSEATTENPTPLTPNTLGSPKRLHISNIPFRFRESDLRQLLG
Sbjct:    1 MLSSDNGGGFYPSSASLNFQQPTENGTDSKQSKTQWGLSSMSSAASLDMASSLFSAAPMFQFTGFPLGYQQATLGDPFGLINFDQAKSAITSLGVNPTITNPSTQNVSLSLPTSNVTTSMVPQKIEECTSSAVEKSEATTENPTPLTPNTLGSPKRLHISNIPFRFRESDLRQLLG 176
[Close]
BLAST of RNA binding protein fox-1 vs. Planmine SMEST
Match: SMESG000022263.1 (SMESG000022263.1)

HSP 1 Score: 281.182 bits (718), Expect = 2.590e-93
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 1 
Query:  142 MLSSDNGGGFYPSSASLNFQQPTENGTDSKQSKTQWGXXXXXXXXXXXXXXXXXXXXPMFQFTGFPLGYQQATLGDPFGLINFDQAKSAITSLGVNPTITNPSTQNVSLSLPTSNVTTSMVPQKIEECTSSAVEKSEAXXXXXXXXXXXXXGSPKRLHISNIPFRFRESDLRQLLG 669
            MLSSDNGGGFYPSSASLNFQQPTENGTDSKQSKTQWGLSSMSSAASLDMASSLFSAAPMFQFTGFPLGYQQATLGDPFGLINFDQAKSAITSLGVNPTITNPSTQNVSLSLPTSNVTTSMVPQKIEECTSSAVEKSEATTENPTPLTPNTLGSPKRLHISNIPFRFRESDLRQLLG
Sbjct:    1 MLSSDNGGGFYPSSASLNFQQPTENGTDSKQSKTQWGLSSMSSAASLDMASSLFSAAPMFQFTGFPLGYQQATLGDPFGLINFDQAKSAITSLGVNPTITNPSTQNVSLSLPTSNVTTSMVPQKIEECTSSAVEKSEATTENPTPLTPNTLGSPKRLHISNIPFRFRESDLRQLLG 176
[Close]
BLAST of RNA binding protein fox-1 vs. Planmine SMEST
Match: SMESG000022262.1 (SMESG000022262.1)

HSP 1 Score: 216.853 bits (551), Expect = 3.426e-67
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 1 
Query:  817 INNATARVITKKKVENSAALAMRGMRTMMPTLLPHQAALKTLAPGFGLPYQPILFADPTXXXXXXXXXXXXXXXXXXXFPFNMTAINPYAAAGMFRGISTIPGFQNSATAATLGQLGNPNSTNMQTG 1197
            INNATARVITKKKVENSAALAMRGMRTMMPTLLPHQAALKTLAPGFGLPYQPILFADPTALLAASYAVAAADQRLQAAFPFNMTAINPYAAAGMFRGISTIPGFQNSATAATLGQLGNPNSTNMQTG
Sbjct:   23 INNATARVITKKKVENSAALAMRGMRTMMPTLLPHQAALKTLAPGFGLPYQPILFADPTALLAASYAVAAADQRLQAAFPFNMTAINPYAAAGMFRGISTIPGFQNSATAATLGQLGNPNSTNMQTG 149
[Close]
BLAST of RNA binding protein fox-1 vs. Planmine SMEST
Match: SMESG000048632.1 (SMESG000048632.1)

HSP 1 Score: 216.083 bits (549), Expect = 3.864e-67
Identity = 128/131 (97.71%), Postives = 129/131 (98.47%), Query Frame = 1 
Query:  817 INNATARVITKKKVENSAALAMRGMRTMMPTLLPHQAALKTLAPGFGLPYQPILFADPTXXXXXXXXXXXXXXXXXXXFPFNMTAINPYAAAGMFRGISTIPGFQNSATAATLGQLGNPNSTNMQTGDCSA 1209
            INNATARVITKKKVENSAALAMRGMRTMMPTLLPHQAALKTLAPGFGLPYQPILFADPTALLAASYAVAAADQRLQAAFPFNMTAINPYAAAGMFRGISTIPGFQNSATAATLGQLGNPNSTNMQTG  +A
Sbjct:    8 INNATARVITKKKVENSAALAMRGMRTMMPTLLPHQAALKTLAPGFGLPYQPILFADPTALLAASYAVAAADQRLQAAFPFNMTAINPYAAAGMFRGISTIPGFQNSATAATLGQLGNPNSTNMQTGLFAA 138
[Close]
BLAST of RNA binding protein fox-1 vs. Planmine SMEST
Match: SMESG000022262.1 (SMESG000022262.1)

HSP 1 Score: 216.083 bits (549), Expect = 4.585e-67
Identity = 128/131 (97.71%), Postives = 129/131 (98.47%), Query Frame = 1 
Query:  817 INNATARVITKKKVENSAALAMRGMRTMMPTLLPHQAALKTLAPGFGLPYQPILFADPTXXXXXXXXXXXXXXXXXXXFPFNMTAINPYAAAGMFRGISTIPGFQNSATAATLGQLGNPNSTNMQTGDCSA 1209
            INNATARVITKKKVENSAALAMRGMRTMMPTLLPHQAALKTLAPGFGLPYQPILFADPTALLAASYAVAAADQRLQAAFPFNMTAINPYAAAGMFRGISTIPGFQNSATAATLGQLGNPNSTNMQTG  +A
Sbjct:    8 INNATARVITKKKVENSAALAMRGMRTMMPTLLPHQAALKTLAPGFGLPYQPILFADPTALLAASYAVAAADQRLQAAFPFNMTAINPYAAAGMFRGISTIPGFQNSATAATLGQLGNPNSTNMQTGLFAA 138
The following BLAST results are available for this feature:
BLAST of RNA binding protein fox-1 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
RBFOX36.550e-4177.27RNA binding fox-1 homolog 3 [Source:HGNC Symbol;Ac... [more]
RBFOX37.062e-4177.27RNA binding fox-1 homolog 3 [Source:HGNC Symbol;Ac... [more]
RBFOX38.088e-4177.27RNA binding fox-1 homolog 3 [Source:HGNC Symbol;Ac... [more]
RBFOX31.149e-4077.27RNA binding fox-1 homolog 3 [Source:HGNC Symbol;Ac... [more]
RBFOX21.185e-4046.41RNA binding fox-1 homolog 2 [Source:HGNC Symbol;Ac... [more]
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BLAST of RNA binding protein fox-1 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5
Match NameE-valueIdentityDescription
fox-15.620e-3264.29Sex determination protein fox-1 [Source:UniProtKB... [more]
fox-19.053e-3264.29Sex determination protein fox-1 [Source:UniProtKB... [more]
fox-11.247e-3164.29Sex determination protein fox-1 [Source:UniProtKB... [more]
asd-16.229e-2858.33RNA-binding protein ASD-1 [Source:UniProtKB/TrEMB... [more]
asd-11.004e-2758.33RNA-binding protein ASD-1 [Source:UniProtKB/TrEMB... [more]
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BLAST of RNA binding protein fox-1 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Rbfox13.242e-3865.42gene:FBgn0052062 transcript:FBtr0113419[more]
Rbfox13.533e-3865.42gene:FBgn0052062 transcript:FBtr0305097[more]
Rbfox13.961e-3865.42gene:FBgn0052062 transcript:FBtr0113418[more]
Rbfox14.024e-3865.42gene:FBgn0052062 transcript:FBtr0305095[more]
Rbfox18.535e-3876.19gene:FBgn0052062 transcript:FBtr0332985[more]
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BLAST of RNA binding protein fox-1 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rbfox3b3.066e-4378.41RNA binding fox-1 homolog 3b [Source:ZFIN;Acc:ZDB-... [more]
rbfox3b1.496e-4260.94RNA binding fox-1 homolog 3b [Source:ZFIN;Acc:ZDB-... [more]
rbfox3a8.343e-4278.41RNA binding fox-1 homolog 3a [Source:ZFIN;Acc:ZDB-... [more]
rbfox3a1.745e-4178.41RNA binding fox-1 homolog 3a [Source:ZFIN;Acc:ZDB-... [more]
rbfox3a3.314e-4178.41RNA binding fox-1 homolog 3a [Source:ZFIN;Acc:ZDB-... [more]
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BLAST of RNA binding protein fox-1 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
yaf21.468e-4077.27YY1 associated factor 2 [Source:Xenbase;Acc:XB-GEN... [more]
yaf23.298e-4077.27YY1 associated factor 2 [Source:Xenbase;Acc:XB-GEN... [more]
yaf23.905e-4077.27YY1 associated factor 2 [Source:Xenbase;Acc:XB-GEN... [more]
slc25a391.243e-3956.49solute carrier family 25 member 39 [Source:Xenbase... [more]
lsm121.318e-3957.69LSM12 homolog [Source:Xenbase;Acc:XB-GENE-5780031][more]
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BLAST of RNA binding protein fox-1 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Rbfox35.394e-4175.82RNA binding protein, fox-1 homolog (C. elegans) 3 ... [more]
Rbfox35.394e-4175.82RNA binding protein, fox-1 homolog (C. elegans) 3 ... [more]
Rbfox37.924e-4175.82RNA binding protein, fox-1 homolog (C. elegans) 3 ... [more]
Rbfox39.709e-4175.82RNA binding protein, fox-1 homolog (C. elegans) 3 ... [more]
Rbfox31.221e-4075.82RNA binding protein, fox-1 homolog (C. elegans) 3 ... [more]
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BLAST of RNA binding protein fox-1 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|A6NFN3|RFOX3_HUMAN3.391e-4077.27RNA binding protein fox-1 homolog 3 OS=Homo sapien... [more]
sp|Q8BIF2|RFOX3_MOUSE8.538e-4075.82RNA binding protein fox-1 homolog 3 OS=Mus musculu... [more]
sp|Q7ZT82|RFX1L_DANRE2.061e-3979.76RNA binding protein fox-1 homolog 1-like OS=Danio ... [more]
sp|A4F5G6|RFOX2_XENLA8.668e-3957.25RNA binding protein fox-1 homolog 2 OS=Xenopus lae... [more]
sp|Q642J5|RFOX1_DANRE1.677e-3872.53RNA binding protein fox-1 homolog 1 OS=Danio rerio... [more]
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BLAST of RNA binding protein fox-1 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A4S2L0M93.569e-4768.70RRM domain-containing protein OS=Opisthorchis feli... [more]
A0A4S2L6P93.818e-4768.70RRM domain-containing protein OS=Opisthorchis feli... [more]
G7YJQ94.731e-4768.70RNA binding protein fox-1 OS=Clonorchis sinensis O... [more]
A0A1S8WHU85.246e-4768.70RRM domain-containing protein OS=Opisthorchis vive... [more]
A0A4S2L1Y37.314e-4768.70RRM domain-containing protein OS=Opisthorchis feli... [more]
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BLAST of RNA binding protein fox-1 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rbfox3b7.053e-4353.69RNA binding fox-1 homolog 3b [Source:ZFIN;Acc:ZDB-... [more]
rbfox3b2.935e-4253.69RNA binding fox-1 homolog 3b [Source:ZFIN;Acc:ZDB-... [more]
rbfox3a5.666e-4255.86RNA binding fox-1 homolog 3a [Source:ZFIN;Acc:ZDB-... [more]
rbfox3a1.529e-4160.48RNA binding fox-1 homolog 3a [Source:ZFIN;Acc:ZDB-... [more]
rbfox3a1.554e-4178.41RNA binding fox-1 homolog 3a [Source:ZFIN;Acc:ZDB-... [more]
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BLAST of RNA binding protein fox-1 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rbfox3b5.386e-1566.67RNA binding fox-1 homolog 3b [Source:ZFIN;Acc:ZDB-... [more]
pabpc45.165e-1031.97poly(A) binding protein, cytoplasmic 4 (inducible ... [more]
RBM392.057e-939.47RNA binding motif protein 39 [Source:HGNC Symbol;A... [more]
BOLL2.078e-933.33boule homolog, RNA binding protein [Source:HGNC Sy... [more]
RBM396.496e-934.57RNA binding motif protein 39 [Source:HGNC Symbol;A... [more]
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BLAST of RNA binding protein fox-1 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 2
Match NameE-valueIdentityDescription
PAB14.112e-734.52Poly(A) binding protein; part of the 3'-end RNA-pr... [more]
MRD11.225e-625.13Essential conserved small ribosomal subunit (40s) ... [more]
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BLAST of RNA binding protein fox-1 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5
Match NameE-valueIdentityDescription
EDO448904.836e-3373.97Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO297151.597e-1043.42Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO332061.046e-830.16Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO339261.322e-833.33Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO351541.257e-731.33Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of RNA binding protein fox-1 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rbfox3b7.742e-4257.78RNA binding fox-1 homolog 3 [Source:NCBI gene;Acc:... [more]
rbfox3b1.787e-4157.78RNA binding fox-1 homolog 3 [Source:NCBI gene;Acc:... [more]
rbfox3b1.987e-4157.78RNA binding fox-1 homolog 3 [Source:NCBI gene;Acc:... [more]
rbfox3b2.190e-4157.78RNA binding fox-1 homolog 3 [Source:NCBI gene;Acc:... [more]
rbfox21.017e-4056.62RNA binding protein fox-1 homolog 2 [Source:NCBI g... [more]
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BLAST of RNA binding protein fox-1 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000048633.12.590e-93100.00SMESG000048633.1[more]
SMESG000022263.12.590e-93100.00SMESG000022263.1[more]
SMESG000022262.13.426e-67100.00SMESG000022262.1[more]
SMESG000048632.13.864e-6797.71SMESG000048632.1[more]
SMESG000022262.14.585e-6797.71SMESG000022262.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30032446 ID=SMED30032446|Name=RNA binding protein fox-1|organism=Schmidtea mediterranea sexual|type=transcript|length=1445bp
ACAAGATTAGTCATCGATATTCCGTTTCTGTAATATTTGGGAAATTATTT
TGTTAAGTATTGCATTCTTTGAAGAATCGTTTACAATTGATGAAAAATGA
ATTTCATGTGGCCACAAGCATCATTGTCAATGAACAAATTAATGCTCTCG
TCCGATAATGGAGGGGGATTTTATCCCTCATCGGCTAGTTTGAATTTCCA
ACAGCCGACAGAAAATGGAACCGATTCCAAGCAATCAAAAACCCAGTGGG
GTCTTTCTTCAATGTCATCGGCAGCTTCACTCGATATGGCTTCTTCGTTG
TTTTCCGCAGCGCCGATGTTTCAGTTTACCGGATTTCCGTTAGGATATCA
ACAAGCAACCCTTGGAGATCCTTTTGGACTCATTAATTTTGATCAAGCAA
AATCTGCGATAACCAGCCTCGGAGTCAATCCAACTATTACAAACCCTTCC
ACTCAAAATGTTTCATTATCTTTGCCGACTTCCAATGTAACGACTTCGAT
GGTTCCACAGAAAATTGAAGAATGCACAAGTTCGGCTGTTGAAAAATCTG
AAGCTACTACAGAGAATCCAACTCCTTTAACACCAAATACTTTGGGATCT
CCTAAACGTCTTCATATTTCAAATATCCCATTTCGATTCAGAGAATCTGA
TTTGAGACAACTTTTGGGGCCATATGGCTCAATTTTAGACGTGGAGATAA
TATTTAATGAGCGTGGGTCAAAGGGATTTGGATTTGTCACTTTCTCTACA
ATTGAAGAGGCAGAGAAAGCCAGAGAAAATCTCAATGGCACAATTGTTGA
AGGACGAAAAATTGAGATAAATAATGCTACAGCGAGAGTTATAACTAAGA
AGAAAGTAGAAAATTCTGCGGCATTGGCTATGAGAGGAATGAGGACAATG
ATGCCAACACTACTTCCACACCAAGCAGCCTTAAAAACTCTTGCACCCGG
ATTCGGATTGCCATACCAGCCTATATTATTTGCTGATCCAACAGCTCTAT
TGGCTGCTAGCTATGCTGTAGCTGCAGCAGATCAGAGATTACAAGCAGCT
TTTCCGTTTAATATGACTGCTATCAACCCATATGCTGCTGCAGGAATGTT
TAGAGGAATATCAACTATTCCAGGATTTCAAAACTCCGCAACTGCTGCAA
CATTGGGCCAATTAGGAAATCCTAATAGCACAAATATGCAAACAGGAGAT
TGTTCAGCACTGGGTTACATACCCGACTTGACTGGAGCAGTTTCAGGAAC
TGATCCGAATTTCCTCAACCGGATCGGGATGACCTATGCCTTGACAAATA
ATCCCGGAGGACCAGCTGTGTACAGAAACAGTTCAAGTTACCAACGATTC
TCACCTTATTGATAGATGTCTCATTTTATTTTTATTTCTTTTCGTTATTT
ACTAGTATTTAAAAATTGATATTTGTACAGGATCTTCTTTTCATA
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protein sequence of SMED30032446-orf-1

>SMED30032446-orf-1 ID=SMED30032446-orf-1|Name=SMED30032446-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=422bp
MNFMWPQASLSMNKLMLSSDNGGGFYPSSASLNFQQPTENGTDSKQSKTQ
WGLSSMSSAASLDMASSLFSAAPMFQFTGFPLGYQQATLGDPFGLINFDQ
AKSAITSLGVNPTITNPSTQNVSLSLPTSNVTTSMVPQKIEECTSSAVEK
SEATTENPTPLTPNTLGSPKRLHISNIPFRFRESDLRQLLGPYGSILDVE
IIFNERGSKGFGFVTFSTIEEAEKARENLNGTIVEGRKIEINNATARVIT
KKKVENSAALAMRGMRTMMPTLLPHQAALKTLAPGFGLPYQPILFADPTA
LLAASYAVAAADQRLQAAFPFNMTAINPYAAAGMFRGISTIPGFQNSATA
ATLGQLGNPNSTNMQTGDCSALGYIPDLTGAVSGTDPNFLNRIGMTYALT
NNPGGPAVYRNSSSYQRFSPY*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000101muscle cell
PLANA:0002032epidermal cell
Vocabulary: INTERPRO
TermDefinition
IPR034237FOX1_RRM
IPR035979RBD_domain_sf
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: molecular function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO:0003723RNA binding
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 171..242
e-value: 1.9E-23
score: 93.9
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 174..239
e-value: 3.3E-18
score: 65.3
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 170..246
score: 18.444
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 166..260
e-value: 3.8E-25
score: 90.0
NoneNo IPR availablePANTHERPTHR15597ATAXIN 2-BINDING PROTEIN 1-RELATEDcoord: 115..421
IPR034237FOX1, RNA recognition motifCDDcd12407RRM_FOX1_likecoord: 170..245
e-value: 1.0872E-48
score: 158.34
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 161..247