SMED30032382

Overview
NameSMED30032382
Smed IDSMED30032382
Length (bp)869
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30032382 (SMED30032382) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30032382 (SMED30032382) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30032382 (SMED30032382) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30032382 (SMED30032382) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30032382

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 5

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
intestinal phagocyteSMED30032382SMESG000062659.1 Contig2500newmark_estsPMID:23079596
Forsthoefel et al., 2012
FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30032382SMESG000062659.1 Contig2500uc_Smed_v2PMID:23079596
Forsthoefel et al., 2012
FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
epidermal cellSMED30032382SMESG000062659.1 dd_Smed_v4_14011_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
whole organism asexual adult single-cell RNA-sequencing evidence
epidermisSMED30032382SMESG000062659.1 dd_Smed_v4_14011_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017
whole organism asexual adult single-cell RNA-sequencing evidence
ventral epidermisSMED30032382SMESG000062659.1 dd_Smed_v4_14011_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017
whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30032382 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.002111:29451..30316 -4267
v31.002111:33612..34458 -3786
Homology
BLAST of SMED30032382 vs. Planmine SMEST
Match: SMESG000062659.1 (SMESG000062659.1)

HSP 1 Score: 454.521 bits (1168), Expect = 1.113e-163
Identity = 236/241 (97.93%), Postives = 238/241 (98.76%), Query Frame = 1
Query:   58 MQIKSFLSIFLLHLFTSAFATWSPDMKLHSANCQTATIETSCPNNTDDYMLDISLITFVNNQELQLENVMRTCRLSKSKLIQTHFSVKCKGLYQVKVNLVPKNLSNCNKDCSKTLKSSVWYLGELACDEAQSNDYQYEKYKTTKNICPASSIRLTVNHRQVPAIKQPRKTNSKVENWLSFEILNILREIRTXXXXXXXXXXXXXXXSIGIFVVWKRRSRLTKQRQYFKTLYNGSLMIPGTV 780
            MQIKSFLSIFLLHLFTSAFATWSPDMKLHSANCQTATIETSCPNNT+DYMLDISLITFVNNQELQLENVMRTCRLSKSKLIQTHFSVKCKGLYQVKVNLVPKNLSNCNKDCSKTLKSSVWYLGELACDEAQSNDYQYEKYKTTKNICPASSIRLTVNHRQVPAIKQPR+TNSKVENWLSFEILNILREIRTLLIVLFVMIILMIVFSIGIFVVWKRRSR TKQRQY K LYNGSLMIPGTV
Sbjct:    1 MQIKSFLSIFLLHLFTSAFATWSPDMKLHSANCQTATIETSCPNNTEDYMLDISLITFVNNQELQLENVMRTCRLSKSKLIQTHFSVKCKGLYQVKVNLVPKNLSNCNKDCSKTLKSSVWYLGELACDEAQSNDYQYEKYKTTKNICPASSIRLTVNHRQVPAIKQPRETNSKVENWLSFEILNILREIRTLLIVLFVMIILMIVFSIGIFVVWKRRSRSTKQRQYSKALYNGSLMIPGTV 241          
BLAST of SMED30032382 vs. Planmine SMEST
Match: SMESG000035957.1 (SMESG000035957.1)

HSP 1 Score: 122.094 bits (305), Expect = 3.304e-33
Identity = 85/238 (35.71%), Postives = 137/238 (57.56%), Query Frame = 1
Query:   82 IFLLHLFTSAFAT---WSPDMKLHSANCQTATIETSCPNNTDDYMLDISLITFVNNQELQLENVMRTCRLSKSKLIQTHFSVKCKGLYQVKVNLVPKNLSNCNKDCSKTLKSSVWYLGELACDEAQSNDYQYEKYKTTKNICPA---SSIRLTVNHRQVPAIKQPRKTNSKVENWLSFEILNILREIRTXXXXXXXXXXXXXXXSIGIFVV---WKRRSRLTKQRQYFKTLYNGSLMI 768
            I +L +F S   T   W+P+ KL  ANC    IET+CPN     +++I L+T +N QE+ L   MR C+    K++ T  S+ CK LY+V V L+ +NL +C KDC K+ +SS WYLG+  CD+  SN+ Q +++K ++N C A   +S  L  + R    ++    +N+ + N L    L  LRE++ L+I +F  +I+ I+  + IF++   +KRRS    Q++ +K  Y+   +I
Sbjct:    7 ILMLAMFGSLSPTPLEWNPNTKLIKANCHELLIETTCPNVKTHDVMEIDLLTNINMQEVVLSVTMRKCKTPNQKMLTT-LSITCKRLYKVNVGLISENLISCIKDCPKSFQSSSWYLGKSKCDQELSNEMQNDQFKVSENECSATTKTSEILPSSRRSTTRVRARANSNADILNVL----LIYLREVKYLIIKIFTAVIIFIIL-VSIFIIKSCFKRRSHSQIQQRSWKDYYDMKSLI 238          
BLAST of SMED30032382 vs. Planmine SMEST
Match: SMESG000058883.1 (SMESG000058883.1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.059e-16
Identity = 43/138 (31.16%), Postives = 71/138 (51.45%), Query Frame = 1
Query:  100 FTSAFATWSPDMKLHSANCQTATIETSCPNNTDDYMLDISLITFVNNQELQLENVMRTCRLSKSKLIQTHFSVKCKGLYQVKVNLVPK-NLSNCNKDCSKTLKSSVWYLGELACDEAQSNDYQYEKYKTTKNICPASS 510
             T+  + WSP++K+  A C   T+   CP       ++I+LI    N+E       R C+L+ S+ ++  F++KC  +Y   V++ P  +   C+  CS  L S  + LG   C  +  +D +Y+ YKT  N+CP SS
Sbjct:  328 LTTPSSQWSPNIKIVKAFCDNVTVSVDCPRVNKQREIEINLIKDFRNEEFS----TRICKLNSSETLEISFNLKCMNIYHFNVSMKPTFSPFECDLYCSNPLSSQKYLLGSRLCRNSSFDDCKYDAYKTKNNLCPKSS 461          

HSP 2 Score: 67.781 bits (164), Expect = 1.550e-12
Identity = 48/182 (26.37%), Postives = 88/182 (48.35%), Query Frame = 1
Query:   82 IFLLHLF--------TSAFATWSPDMKLHSANCQTATIETSCPNNTDDYMLDISLITFVNNQELQLENVMRTCRLSKSKLIQTHFSVKCKGLYQVKVNLVPKNLSNCNKDCSKTLKSSVWYLGELACDEAQSNDYQYEKYKTTKNICPASSIRLTVNH------RQVPAIKQPRKTNSKVEN 585
            I+L++LF         S    W+PD++L +  C   T+   CP  +    ++  L    +  +  ++ +   CR+++S+ + T FS++CK LY+V ++L P  + +C + CS    S +W LG   C E  + D  +  +   +N C  SSI+ +++       R  P    PR  N+  +N
Sbjct:   28 IYLINLFIFYICCNWVSLVPIWNPDIRLTNGVCNEVTLTAKCPTLSTRRSIEFELYPLYDPTKSVIQTLQ--CRINQSQPLTTTFSIQCKNLYRVNISLSP--IFSCTEYCSDIHTSRIWLLGGNTCGEI-ALDCAFNVHLPRENSCINSSIQCSLDSTVQSATRVSPMSLNPRLVNAYCKN 204          

HSP 3 Score: 57.3806 bits (137), Expect = 4.109e-9
Identity = 39/130 (30.00%), Postives = 74/130 (56.92%), Query Frame = 1
Query:  136 KLHSANCQTATIETSCPNNTDDYMLDISLITFVNNQELQLENVMRTCRLSKSKLIQTHFSVKCKGLYQVKVNLVPKNLSNCNKDCSKTLKSSVWYLGELACDEAQSNDYQY-EKYKTTKNICPASSIRLT 522
            +L +A C+  T+E SCP + +D    I  I  ++NQ+  LE++ + C+ + +KL+Q  F + CK  Y V+V+L+  +L N +K   +  +S+ W LG++ C        ++ +++K  +N C  S++  T
Sbjct:  196 RLVNAYCKNVTVEASCPQSPEDQY--IEFILSLSNQK-HLESISKLCQSNATKLVQVTFKISCKNFYYVEVSLLSSSLKN-SKVPLRNQRSATWILGDVICSNDIKEKCRFIDQFKVPENKCYTSTVNCT 321          

HSP 4 Score: 50.447 bits (119), Expect = 7.459e-7
Identity = 36/141 (25.53%), Postives = 63/141 (44.68%), Query Frame = 1
Query:  103 TSAFATWSPDMKLHSANCQTATIETSCPNNTDDYMLDISLITFVNNQELQLENVMRTCRLSKSKLIQTHFSVKCKGLYQVKVNLVPK-NLSNCNKDCSKTLKSSVWYLGELACDEAQSNDYQYEKYKTTKNICPASSIRLT 522
            +S+   W   +K+    C   T++ SCP+  D   ++  L    N+Q ++  +V   C  S+   +  HF ++C+ LYQ   NL+   N +   K  ++++ S  W  G   C E + N  Q  KY+     C     R +
Sbjct:  471 SSSHKIWESQLKIVQDFCSNVTVKASCPDLKD--RINFLLFEKGNSQPIKGRSV--PCNSSRGYTVAAHFRIRCRNLYQFIANLIRNTNKTEPYKKKNESILSQFWVFGTENCPENKFNICQSAKYRFNSTKCADGYYRCS 607          
BLAST of SMED30032382 vs. Planmine SMEST
Match: SMESG000058905.1 (SMESG000058905.1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.004e-14
Identity = 46/139 (33.09%), Postives = 70/139 (50.36%), Query Frame = 1
Query:  121 WSPDMKLHSANCQTATIETSCPNNTDDYMLDISLITFVNNQELQLENVMRTCRLSKSKLIQTHFSVKCKGLYQVKVNLVPK-NLSNCNKDCSKTLKSSVWYLGELACDEAQ--SNDYQYEKYKTTKNICPASSIRLTVN 528
            W P++ L SANC    IE +CP    +  ++ SL  F   Q +Q     + C  S +K +     + C  LYQV ++L P   + NC + C +   S +W  G++ C   Q  SN+    KY T KNICPAS+ + + +
Sbjct:   21 WDPNLTLISANCSNVNIEATCPKLVKERNIEFSLFEFP-TQNVQSVKTYK-CPASNAKKLHVSMKLPCINLYQVNISLSPIFPMINCREYCLEAHSSPIWLFGDI-CQNKQFLSNNGSLNKYMTPKNICPASTQKCSAD 156          

HSP 2 Score: 71.633 bits (174), Expect = 6.919e-14
Identity = 41/127 (32.28%), Postives = 63/127 (49.61%), Query Frame = 1
Query:  136 KLHSANCQTATIETSCPNNTDDYMLDISLITFVNNQELQLENVMRTCRLSKSKLIQTHFSVKCKGLYQVKVNLVPKNLSNCNKDCSKTLKSSVWYLGELACDEAQSNDYQYEKYKTTKNICPASSIR 516
            KL  A+C+ A  +  CP    ++   ++ I +  N       +M+ C+ + S +I   FS+ CK LY + ++  P N S C+   S      +W LG   C E   ND QYE+YK+ +N C  SS R
Sbjct:  177 KLTDADCENAIFQMECP--LFNFGSQLTFIFYRQNHFQNHSEIMKHCKPNNSNVINVSFSLSCKSLYLLHISFKPTNESICDGSYSVEHPIQMWLLGGQHCFEEFENDCQYEQYKSNRNKCDISSRR 301          

HSP 3 Score: 59.3066 bits (142), Expect = 9.318e-10
Identity = 36/132 (27.27%), Postives = 65/132 (49.24%), Query Frame = 1
Query:  109 AFATWSPDMKLHSANCQTATIETSCPNNTDDYMLDISLITFVNNQELQLENVMRTCRLSKSKLIQTHFSVKCKGLYQVKVNLVPKNLSN-CNKDCSKTLKSSVWYLGELACDEAQSNDYQYEKYKTTKNICP 501
            +F  WSP++KL +A C   T++ +CP       L+ SL+  + ++ +    V + C       ++  F  +C+ +Y V + + P   S  C++ CSK   S +W LG   C +   +  +  KY+  +N CP
Sbjct:  307 SFTQWSPNIKLITAYCTNITVQATCPFLNVSRNLEFSLLR-MGDRSIS-ATVTKICNPLSKTYLKVSFEFECRAVYYVNIIMSPITPSMICDEFCSKQHSSEMWLLGRKLCPKVGLDYCKVRKYEINENHCP 436          
BLAST of SMED30032382 vs. Planmine SMEST
Match: SMESG000058905.1 (SMESG000058905.1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.172e-14
Identity = 46/139 (33.09%), Postives = 70/139 (50.36%), Query Frame = 1
Query:  121 WSPDMKLHSANCQTATIETSCPNNTDDYMLDISLITFVNNQELQLENVMRTCRLSKSKLIQTHFSVKCKGLYQVKVNLVPK-NLSNCNKDCSKTLKSSVWYLGELACDEAQ--SNDYQYEKYKTTKNICPASSIRLTVN 528
            W P++ L SANC    IE +CP    +  ++ SL  F   Q +Q     + C  S +K +     + C  LYQV ++L P   + NC + C +   S +W  G++ C   Q  SN+    KY T KNICPAS+ + + +
Sbjct:   24 WDPNLTLISANCSNVNIEATCPKLVKERNIEFSLFEFP-TQNVQSVKTYK-CPASNAKKLHVSMKLPCINLYQVNISLSPIFPMINCREYCLEAHSSPIWLFGDI-CQNKQFLSNNGSLNKYMTPKNICPASTQKCSAD 159          

HSP 2 Score: 71.633 bits (174), Expect = 6.946e-14
Identity = 41/127 (32.28%), Postives = 63/127 (49.61%), Query Frame = 1
Query:  136 KLHSANCQTATIETSCPNNTDDYMLDISLITFVNNQELQLENVMRTCRLSKSKLIQTHFSVKCKGLYQVKVNLVPKNLSNCNKDCSKTLKSSVWYLGELACDEAQSNDYQYEKYKTTKNICPASSIR 516
            KL  A+C+ A  +  CP    ++   ++ I +  N       +M+ C+ + S +I   FS+ CK LY + ++  P N S C+   S      +W LG   C E   ND QYE+YK+ +N C  SS R
Sbjct:  180 KLTDADCENAIFQMECP--LFNFGSQLTFIFYRQNHFQNHSEIMKHCKPNNSNVINVSFSLSCKSLYLLHISFKPTNESICDGSYSVEHPIQMWLLGGQHCFEEFENDCQYEQYKSNRNKCDISSRR 304          

HSP 3 Score: 59.3066 bits (142), Expect = 1.024e-9
Identity = 36/132 (27.27%), Postives = 65/132 (49.24%), Query Frame = 1
Query:  109 AFATWSPDMKLHSANCQTATIETSCPNNTDDYMLDISLITFVNNQELQLENVMRTCRLSKSKLIQTHFSVKCKGLYQVKVNLVPKNLSN-CNKDCSKTLKSSVWYLGELACDEAQSNDYQYEKYKTTKNICP 501
            +F  WSP++KL +A C   T++ +CP       L+ SL+  + ++ +    V + C       ++  F  +C+ +Y V + + P   S  C++ CSK   S +W LG   C +   +  +  KY+  +N CP
Sbjct:  310 SFTQWSPNIKLITAYCTNITVQATCPFLNVSRNLEFSLLR-MGDRSIS-ATVTKICNPLSKTYLKVSFEFECRAVYYVNIIMSPITPSMICDEFCSKQHSSEMWLLGRKLCPKVGLDYCKVRKYEINENHCP 439          
The following BLAST results are available for this feature:
BLAST of SMED30032382 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032382 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032382 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032382 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032382 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032382 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032382 vs. UniProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032382 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032382 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032382 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032382 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032382 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032382 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032382 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000062659.11.113e-16397.93SMESG000062659.1[more]
SMESG000035957.13.304e-3335.71SMESG000035957.1[more]
SMESG000058883.15.059e-1631.16SMESG000058883.1[more]
SMESG000058905.14.004e-1433.09SMESG000058905.1[more]
SMESG000058905.14.172e-1433.09SMESG000058905.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30032382 ID=SMED30032382|Name=SMED30032382|organism=Schmidtea mediterranea sexual|type=transcript|length=869bp
ACATAATACAGTAGCCAAATTAAATTATATTCTCAAAACACTTCTCAACT
GTTCAAAATGCAAATCAAATCATTTCTATCTATATTTTTACTTCACTTAT
TCACTTCGGCATTTGCAACTTGGAGTCCCGACATGAAGCTCCACAGCGCG
AACTGTCAAACTGCCACCATTGAAACCTCCTGTCCCAACAACACAGATGA
TTATATGCTTGATATTAGCTTGATAACGTTTGTAAATAATCAGGAATTGC
AATTGGAAAATGTAATGAGAACCTGTCGGCTGTCTAAGTCAAAACTGATC
CAAACTCATTTTTCTGTCAAATGCAAAGGTTTGTATCAAGTCAAGGTGAA
TTTGGTTCCTAAAAATTTGTCGAATTGTAATAAAGACTGCTCAAAAACTC
TCAAGAGTTCAGTATGGTATTTAGGGGAGCTGGCTTGCGATGAAGCTCAA
TCGAATGACTACCAATATGAAAAATATAAAACTACGAAAAATATATGTCC
TGCTTCATCAATTAGATTGACCGTCAATCACCGCCAAGTTCCTGCTATCA
AACAGCCGAGAAAAACAAATTCCAAAGTTGAAAATTGGTTATCATTTGAA
ATATTGAATATACTAAGGGAGATTAGAACCCTTCTGATCGTATTATTTGT
CATGATTATTTTGATGATTGTGTTTTCTATTGGGATCTTTGTTGTGTGGA
AAAGGAGATCCCGGTTAACAAAACAGCGACAGTATTTCAAAACTTTATAT
AATGGATCCCTTATGATTCCAGGAACTGTTTAATTAATTTATTATTTAAA
GGCAGCTTTTGTTTTAAACCTTTTTTGTAAATTTTTAAATTTAAAATATA
TATTTTAGCTATTCAAAAA
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protein sequence of SMED30032382-orf-1

>SMED30032382-orf-1 ID=SMED30032382-orf-1|Name=SMED30032382-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=242bp
MQIKSFLSIFLLHLFTSAFATWSPDMKLHSANCQTATIETSCPNNTDDYM
LDISLITFVNNQELQLENVMRTCRLSKSKLIQTHFSVKCKGLYQVKVNLV
PKNLSNCNKDCSKTLKSSVWYLGELACDEAQSNDYQYEKYKTTKNICPAS
SIRLTVNHRQVPAIKQPRKTNSKVENWLSFEILNILREIRTLLIVLFVMI
ILMIVFSIGIFVVWKRRSRLTKQRQYFKTLYNGSLMIPGTV*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000034epidermis
PLANA:0000070intestinal phagocyte
PLANA:0000096ventral epidermis
PLANA:0002032epidermal cell
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..20
score: 0.839
NoneNo IPR availableTMHMMTMhelixcoord: 192..214