SMED30032329

Overview
NameSMED30032329
Smed IDSMED30032329
Length (bp)184
Neoblast Clusters

Zeng et. al., 2018




 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30032329

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 13

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
intestinal phagocyteSMED30032329SMESG000042387.1 Contig1419newmark_estsPMID:23079596
Forsthoefel et al., 2012
FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30032329SMESG000042387.1 Contig1419uc_Smed_v2PMID:23079596
Forsthoefel et al., 2012
FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30032329SMESG000072323.1 Contig1419newmark_estsPMID:23079596
Forsthoefel et al., 2012
FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30032329SMESG000072323.1 Contig1419uc_Smed_v2PMID:23079596
Forsthoefel et al., 2012
FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
head regionSMED30032329SMESG000042387.1 SmedASXL_006018SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016
whole organism asexual adult RNA-sequencing evidence
protonephridiaSMED30032329SMESG000042387.1 dd_Smed_v4_6329_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30032329SMESG000042387.1 dd_Smed_v4_6329_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30032329SMESG000042387.1 dd_Smed_v4_6329_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30032329SMESG000042387.1 Contig1419newmark_estsPMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30032329SMESG000042387.1 Contig1419uc_Smed_v2PMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30032329SMESG000072323.1 Contig1419newmark_estsPMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30032329SMESG000072323.1 Contig1419uc_Smed_v2PMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
head regionSMED30032329SMESG000042387.1 dd_Smed_v6_6329_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017
whole organism asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30032329 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.001940:60693..63404 -879
Homology
BLAST of SMED30032329 vs. Ensembl Human
Match: GCHFR (GTP cyclohydrolase I feedback regulator [Source:HGNC Symbol;Acc:HGNC:4194])

HSP 1 Score: 64.3142 bits (155), Expect = 1.535e-15
Identity = 28/42 (66.67%), Postives = 35/42 (83.33%), Query Frame = -1
Query:   50 FVLISTQVRLVTGPTYVGDEESDPELMTYLNAEKIKALGNNL 175
            ++LISTQ+R+  GPT VGDE+SDPELM +L A K +ALGNNL
Sbjct:    3 YLLISTQIRMEVGPTMVGDEQSDPELMQHLGASKRRALGNNL 44          
BLAST of SMED30032329 vs. Ensembl Human
Match: GCHFR (GTP cyclohydrolase I feedback regulator [Source:HGNC Symbol;Acc:HGNC:4194])

HSP 1 Score: 63.1586 bits (152), Expect = 1.082e-14
Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = -1
Query:   44 FVLISTQVRLVTGPTYVGDEESDPELMTYLNAEKIKALGNNL*E 175
            ++LISTQ+R+  GPT VGDE+SDPELM +L A K +ALGNN  E
Sbjct:    3 YLLISTQIRMEVGPTMVGDEQSDPELMQHLGASKRRALGNNFYE 46          
BLAST of SMED30032329 vs. Ensembl Human
Match: GCHFR (GTP cyclohydrolase I feedback regulator [Source:HGNC Symbol;Acc:HGNC:4194])

HSP 1 Score: 43.1282 bits (100), Expect = 5.628e-7
Identity = 19/28 (67.86%), Postives = 22/28 (78.57%), Query Frame = -1
Query:   44 VGDEESDPELMTYLNAEKIKALGNNL*E 127
            VGDE+SDPELM +L A K +ALGNN  E
Sbjct:    2 VGDEQSDPELMQHLGASKRRALGNNFYE 29          
BLAST of SMED30032329 vs. Ensembl Human
Match: GCHFR (GTP cyclohydrolase I feedback regulator [Source:HGNC Symbol;Acc:HGNC:4194])

HSP 1 Score: 43.1282 bits (100), Expect = 5.628e-7
Identity = 19/28 (67.86%), Postives = 22/28 (78.57%), Query Frame = -1
Query:   44 VGDEESDPELMTYLNAEKIKALGNNL*E 127
            VGDE+SDPELM +L A K +ALGNN  E
Sbjct:    2 VGDEQSDPELMQHLGASKRRALGNNFYE 29          
BLAST of SMED30032329 vs. Ensembl Celegans
Match: gfrp-1 (GTP cyclohydrolase I Feedback Regulatory Protein homolog [Source:UniProtKB/TrEMBL;Acc:D6RYD9])

HSP 1 Score: 52.7582 bits (125), Expect = 6.182e-11
Identity = 25/46 (54.35%), Postives = 32/46 (69.57%), Query Frame = -1
Query:   38 FVLISTQVRLVTGPTYVGDEESDPELMTYLNAEKIKALGNNL*ELL 175
            ++LISTQ+R+  GPT VGD ESDP+LM  L A+  K LGN   E +
Sbjct:    3 YILISTQIRMECGPTMVGDGESDPKLMGTLEAKLTKQLGNEFQEYI 48          
BLAST of SMED30032329 vs. Ensembl Zebrafish
Match: gchfr (GTP cyclohydrolase I feedback regulator [Source:NCBI gene;Acc:393735])

HSP 1 Score: 62.3882 bits (150), Expect = 1.502e-14
Identity = 29/44 (65.91%), Postives = 33/44 (75.00%), Query Frame = -1
Query:   44 FVLISTQVRLVTGPTYVGDEESDPELMTYLNAEKIKALGNNL*E 175
            ++LISTQ+RL TGPT VGDE SDP +M YL A KI  LGNN  E
Sbjct:    3 YILISTQIRLETGPTMVGDEYSDPSIMNYLGARKITVLGNNFSE 46          
BLAST of SMED30032329 vs. Ensembl Xenopus
Match: eci2 (enoyl-CoA delta isomerase 2 [Source:Xenbase;Acc:XB-GENE-961246])

HSP 1 Score: 54.6842 bits (130), Expect = 2.200e-11
Identity = 27/44 (61.36%), Postives = 32/44 (72.73%), Query Frame = -1
Query:   44 FVLISTQVRLVTGPTYVGDEESDPELMTYLNAEKIKALGNNL*E 175
            +VLISTQ+R+ TGPT VGDE SD +LM  L A+K   LGNN  E
Sbjct:    3 YVLISTQIRMETGPTIVGDEFSDTQLMAQLEADKRTVLGNNFSE 46          
BLAST of SMED30032329 vs. Ensembl Mouse
Match: Gchfr (GTP cyclohydrolase I feedback regulator [Source:MGI Symbol;Acc:MGI:2443977])

HSP 1 Score: 59.3066 bits (142), Expect = 2.568e-13
Identity = 27/44 (61.36%), Postives = 32/44 (72.73%), Query Frame = -1
Query:   44 FVLISTQVRLVTGPTYVGDEESDPELMTYLNAEKIKALGNNL*E 175
            ++LISTQ+R+  GPT VGDE SDPELM +L A K   LGNN  E
Sbjct:    3 YLLISTQIRMEVGPTMVGDEHSDPELMQHLGASKRSVLGNNFYE 46          
BLAST of SMED30032329 vs. UniProt/SwissProt
Match: sp|P30047|GFRP_HUMAN (GTP cyclohydrolase 1 feedback regulatory protein OS=Homo sapiens OX=9606 GN=GCHFR PE=1 SV=3)

HSP 1 Score: 63.1586 bits (152), Expect = 5.198e-14
Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = -1
Query:   44 FVLISTQVRLVTGPTYVGDEESDPELMTYLNAEKIKALGNNL*E 175
            ++LISTQ+R+  GPT VGDE+SDPELM +L A K +ALGNN  E
Sbjct:    3 YLLISTQIRMEVGPTMVGDEQSDPELMQHLGASKRRALGNNFYE 46          
BLAST of SMED30032329 vs. UniProt/SwissProt
Match: sp|Q6PBT6|GFRP_DANRE (GTP cyclohydrolase 1 feedback regulatory protein OS=Danio rerio OX=7955 GN=gchfr PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 1.134e-13
Identity = 29/44 (65.91%), Postives = 33/44 (75.00%), Query Frame = -1
Query:   44 FVLISTQVRLVTGPTYVGDEESDPELMTYLNAEKIKALGNNL*E 175
            ++LISTQ+RL TGPT VGDE SDP +M YL A KI  LGNN  E
Sbjct:    3 YILISTQIRLETGPTMVGDEYSDPSIMNYLGARKITVLGNNFSE 46          
BLAST of SMED30032329 vs. UniProt/SwissProt
Match: sp|Q32L41|GFRP_BOVIN (GTP cyclohydrolase 1 feedback regulatory protein OS=Bos taurus OX=9913 GN=GCHFR PE=3 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.558e-12
Identity = 27/44 (61.36%), Postives = 32/44 (72.73%), Query Frame = -1
Query:   44 FVLISTQVRLVTGPTYVGDEESDPELMTYLNAEKIKALGNNL*E 175
            ++LISTQ+R+  GPT VGDE SDPELM +L A K   LGNN  E
Sbjct:    3 YLLISTQIRMEVGPTVVGDEHSDPELMQHLGASKRSVLGNNFSE 46          
BLAST of SMED30032329 vs. UniProt/SwissProt
Match: sp|P99025|GFRP_MOUSE (GTP cyclohydrolase 1 feedback regulatory protein OS=Mus musculus OX=10090 GN=Gchfr PE=1 SV=3)

HSP 1 Score: 59.3066 bits (142), Expect = 1.796e-12
Identity = 27/44 (61.36%), Postives = 32/44 (72.73%), Query Frame = -1
Query:   44 FVLISTQVRLVTGPTYVGDEESDPELMTYLNAEKIKALGNNL*E 175
            ++LISTQ+R+  GPT VGDE SDPELM +L A K   LGNN  E
Sbjct:    3 YLLISTQIRMEVGPTMVGDEHSDPELMQHLGASKRSVLGNNFYE 46          
BLAST of SMED30032329 vs. UniProt/SwissProt
Match: sp|P70552|GFRP_RAT (GTP cyclohydrolase 1 feedback regulatory protein OS=Rattus norvegicus OX=10116 GN=Gchfr PE=1 SV=3)

HSP 1 Score: 58.9214 bits (141), Expect = 2.310e-12
Identity = 27/44 (61.36%), Postives = 32/44 (72.73%), Query Frame = -1
Query:   44 FVLISTQVRLVTGPTYVGDEESDPELMTYLNAEKIKALGNNL*E 175
            ++LISTQ+R+  GPT VGDE SDPELM  L A K + LGNN  E
Sbjct:    3 YLLISTQIRMEVGPTMVGDEHSDPELMQQLGASKRRVLGNNFYE 46          
BLAST of SMED30032329 vs. TrEMBL
Match: A0A2J8QDM2 (GCHFR isoform 2 OS=Pan troglodytes OX=9598 GN=CK820_G0033505 PE=4 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 2.185e-12
Identity = 28/42 (66.67%), Postives = 35/42 (83.33%), Query Frame = -1
Query:   50 FVLISTQVRLVTGPTYVGDEESDPELMTYLNAEKIKALGNNL 175
            ++LISTQ+R+  GPT VGDE+SDPELM +L A K +ALGNNL
Sbjct:    3 YLLISTQIRMEVGPTMVGDEQSDPELMQHLGASKRRALGNNL 44          
BLAST of SMED30032329 vs. TrEMBL
Match: H0YNM1 (GTP cyclohydrolase 1 feedback regulatory protein OS=Homo sapiens OX=9606 GN=GCHFR PE=1 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 2.185e-12
Identity = 28/42 (66.67%), Postives = 35/42 (83.33%), Query Frame = -1
Query:   50 FVLISTQVRLVTGPTYVGDEESDPELMTYLNAEKIKALGNNL 175
            ++LISTQ+R+  GPT VGDE+SDPELM +L A K +ALGNNL
Sbjct:    3 YLLISTQIRMEVGPTMVGDEQSDPELMQHLGASKRRALGNNL 44          
BLAST of SMED30032329 vs. TrEMBL
Match: A0A401P3Z4 (Uncharacterized protein OS=Scyliorhinus torazame OX=75743 GN=scyTo_0013745 PE=4 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 2.771e-12
Identity = 32/44 (72.73%), Postives = 34/44 (77.27%), Query Frame = -1
Query:   44 FVLISTQVRLVTGPTYVGDEESDPELMTYLNAEKIKALGNNL*E 175
            +VLISTQ+RL TGPT VGDE SD ELM YL AEK  ALGNN  E
Sbjct:    3 YVLISTQIRLETGPTIVGDEHSDEELMRYLGAEKTTALGNNFSE 46          
BLAST of SMED30032329 vs. TrEMBL
Match: M1ERP8 (GTP cyclohydrolase I feedback regulator (Fragment) OS=Mustela putorius furo OX=9669 PE=2 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 5.032e-12
Identity = 30/44 (68.18%), Postives = 33/44 (75.00%), Query Frame = -1
Query:   44 FVLISTQVRLVTGPTYVGDEESDPELMTYLNAEKIKALGNNL*E 175
            +VLISTQ+R+  GPT VGDE SDPELM YL A K  ALGNN  E
Sbjct:    3 YVLISTQIRMEVGPTMVGDEHSDPELMQYLGASKRSALGNNFYE 46          
BLAST of SMED30032329 vs. TrEMBL
Match: M3YBF3 (GTP cyclohydrolase I feedback regulator OS=Mustela putorius furo OX=9669 GN=GCHFR PE=4 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 5.949e-12
Identity = 30/44 (68.18%), Postives = 33/44 (75.00%), Query Frame = -1
Query:   44 FVLISTQVRLVTGPTYVGDEESDPELMTYLNAEKIKALGNNL*E 175
            +VLISTQ+R+  GPT VGDE SDPELM YL A K  ALGNN  E
Sbjct:    3 YVLISTQIRMEVGPTMVGDEHSDPELMQYLGASKRSALGNNFYE 46          
BLAST of SMED30032329 vs. Ensembl Nematostella
Match: EDO32067 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SW52])

HSP 1 Score: 55.0694 bits (131), Expect = 3.542e-12
Identity = 26/46 (56.52%), Postives = 32/46 (69.57%), Query Frame = -1
Query:   38 FVLISTQVRLVTGPTYVGDEESDPELMTYLNAEKIKALGNNL*ELL 175
            ++LIST++RL  GPT  GDE SDPELM  L+AE +   GNN  E L
Sbjct:    3 YILISTRIRLELGPTQCGDEWSDPELMALLDAELVHQFGNNFKEYL 48          
BLAST of SMED30032329 vs. Ensembl Medaka
Match: gchfr (GTP cyclohydrolase I feedback regulator [Source:NCBI gene;Acc:101171044])

HSP 1 Score: 58.9214 bits (141), Expect = 3.186e-13
Identity = 28/44 (63.64%), Postives = 32/44 (72.73%), Query Frame = -1
Query:   44 FVLISTQVRLVTGPTYVGDEESDPELMTYLNAEKIKALGNNL*E 175
            ++LISTQ+RL TGPT VGDE SDP +M YL A K   LGNN  E
Sbjct:    3 YILISTQIRLETGPTNVGDEFSDPAVMNYLGARKTTVLGNNFSE 46          
BLAST of SMED30032329 vs. Ensembl Medaka
Match: gchfr (GTP cyclohydrolase I feedback regulator [Source:NCBI gene;Acc:101171044])

HSP 1 Score: 44.669 bits (104), Expect = 1.242e-7
Identity = 21/33 (63.64%), Postives = 22/33 (66.67%), Query Frame = -1
Query:   44 TGPTYVGDEESDPELMTYLNAEKIKALGNNL*E 142
            TGPT VGDE SDP +M YL A K   LGNN  E
Sbjct:   27 TGPTNVGDEFSDPAVMNYLGARKTTVLGNNFSE 59          
BLAST of SMED30032329 vs. Planmine SMEST
Match: SMESG000042387.1 (SMESG000042387.1)

HSP 1 Score: 85.5001 bits (210), Expect = 5.388e-24
Identity = 40/43 (93.02%), Postives = 41/43 (95.35%), Query Frame = -1
Query:   50 MFVLISTQVRLVTGPTYVGDEESDPELMTYLNAEKIKALGNNL 178
            MFVLISTQVRL +GPTYVGDEESDPELMTYLNAEKIKALGNN 
Sbjct:    1 MFVLISTQVRLESGPTYVGDEESDPELMTYLNAEKIKALGNNF 43          
The following BLAST results are available for this feature:
BLAST of SMED30032329 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 4
Match NameE-valueIdentityDescription
GCHFR1.535e-1566.67GTP cyclohydrolase I feedback regulator [Source:HG... [more]
GCHFR1.082e-1463.64GTP cyclohydrolase I feedback regulator [Source:HG... [more]
GCHFR5.628e-767.86GTP cyclohydrolase I feedback regulator [Source:HG... [more]
GCHFR5.628e-767.86GTP cyclohydrolase I feedback regulator [Source:HG... [more]
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BLAST of SMED30032329 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 1
Match NameE-valueIdentityDescription
gfrp-16.182e-1154.35GTP cyclohydrolase I Feedback Regulatory Protein h... [more]
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BLAST of SMED30032329 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032329 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
gchfr1.502e-1465.91GTP cyclohydrolase I feedback regulator [Source:NC... [more]
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BLAST of SMED30032329 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 1
Match NameE-valueIdentityDescription
eci22.200e-1161.36enoyl-CoA delta isomerase 2 [Source:Xenbase;Acc:XB... [more]
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BLAST of SMED30032329 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 1
Match NameE-valueIdentityDescription
Gchfr2.568e-1361.36GTP cyclohydrolase I feedback regulator [Source:MG... [more]
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BLAST of SMED30032329 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|P30047|GFRP_HUMAN5.198e-1463.64GTP cyclohydrolase 1 feedback regulatory protein O... [more]
sp|Q6PBT6|GFRP_DANRE1.134e-1365.91GTP cyclohydrolase 1 feedback regulatory protein O... [more]
sp|Q32L41|GFRP_BOVIN1.558e-1261.36GTP cyclohydrolase 1 feedback regulatory protein O... [more]
sp|P99025|GFRP_MOUSE1.796e-1261.36GTP cyclohydrolase 1 feedback regulatory protein O... [more]
sp|P70552|GFRP_RAT2.310e-1261.36GTP cyclohydrolase 1 feedback regulatory protein O... [more]
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BLAST of SMED30032329 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2J8QDM22.185e-1266.67GCHFR isoform 2 OS=Pan troglodytes OX=9598 GN=CK82... [more]
H0YNM12.185e-1266.67GTP cyclohydrolase 1 feedback regulatory protein O... [more]
A0A401P3Z42.771e-1272.73Uncharacterized protein OS=Scyliorhinus torazame O... [more]
M1ERP85.032e-1268.18GTP cyclohydrolase I feedback regulator (Fragment)... [more]
M3YBF35.949e-1268.18GTP cyclohydrolase I feedback regulator OS=Mustela... [more]
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BLAST of SMED30032329 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032329 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032329 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032329 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO320673.542e-1256.52Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of SMED30032329 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 2
Match NameE-valueIdentityDescription
gchfr3.186e-1363.64GTP cyclohydrolase I feedback regulator [Source:NC... [more]
gchfr1.242e-763.64GTP cyclohydrolase I feedback regulator [Source:NC... [more]
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BLAST of SMED30032329 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000042387.15.388e-2493.02SMESG000042387.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30032329 ID=SMED30032329|Name=SMED30032329|organism=Schmidtea mediterranea sexual|type=transcript|length=184bp
CAAGTTTCGAGCTATACGTAAAATTATATGTAAATAATAATAATTCTTAC
AAATTATTTCCTAAAGCTTTAATTTTTTCTGCATTTAGATATGTCATCAA
TTCCGGGTCGCTTTCCTCGTCTCCTACATATGTTGGGCCAGTTACTAATC
TCACTTGCGTACTAATTAGAACAAACATGCATAT
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000020protonephridia
PLANA:0000070intestinal phagocyte
PLANA:0000418head
Vocabulary: INTERPRO
TermDefinition
IPR036717GFRP_sf
IPR009112GTP_CycHdrlase_I_reg
Vocabulary: biological process
TermDefinition
GO:0009890negative regulation of biosynthetic process
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009112GTP cyclohydrolase I, feedback regulatory proteinPFAMPF06399GFRPcoord: 4..44
e-value: 3.6E-15
score: 55.6
IPR036717GFRP superfamilyGENE3DG3DSA:3.30.1410.10coord: 3..45
e-value: 5.3E-12
score: 47.3
IPR036717GFRP superfamilySUPERFAMILYSSF69761GTP cyclohydrolase I feedback regulatory protein, GFRPcoord: 4..44
NoneNo IPR availablePRODOMPD028559coord: 10..45
e-value: 3.0E-8
score: 133.0