SMED30032324
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30032324 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 5
Alignments
SMED30032324 aligns in the following genomic locations:
Homology
BLAST of SMED30032324 vs. TrEMBL
Match: G4V7W3 (Putative monocarboxylate transporter OS=Schistosoma mansoni OX=6183 GN=Smp_079640 PE=4 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 3.507e-23 Identity = 114/460 (24.78%), Postives = 193/460 (41.96%), Query Frame = 1 Query: 178 FNSIHEEEKVFNTDVVNWQIRVRLVLFSIFACALSIT-VAAKIRFTPVISHALSVHFNNKFPQAQMEWIGRLYAIIVLCMLPIVTGVIDYYKIGYRFALCISGLMHMIACITNSTVVHPLFFVLTDSFICGFGSAISFAVFLLAVDDIFPKGNRFRVPATALCQGSTIGSLFILDLFAYLAKHLGWMM-LQL---------CLAGLFSIEAAMLILTCPEHGLKVRVKQRGGSKGLSDKSLELESFQKPEITPNKLLGLTFIE-MNYSPSVFPWLVYRFFMTIIHQGVFTLVLTDSHLITTPDIDILMPQYYATTLSALLYASGESLFYLLGAAFGYFILGYLLHVSI--GFLCILFLVTVTWQPVRLQMAQSMMVGNAVCACLTGVCIGALGTCLIAASEEATMIPGRKIFPFVKLIEGLAFTFSPFLFDILNKISEQNIWLLTFSVLTAANACLLVFI 1515 F++I+ E + W+ RL + AL++ + K R + AL +N+ ++ W+G YA + ++P T I + YR + ++GL+ I+C+T++ V P + LT + I G GS + L ++ F + +RF V ATA G G L L++ L + GW + QL CLAG+ I + + ++ +K L SL L P+ + + +E + +P VF W R ++ ++ L++ + ++ + L Q L + GES+ + LGA G I GYL + + LFLV + L + V A TG +G T L A SEE M+ G FP K+I G+ +P + + ++ ++L + A LL FI Sbjct: 15 FHTIYVEFSRARRKLYGWR---RLGWLVLLVAALNVVCIGGKRRAFGIFVAALHKAYNDT-SMTELNWVGDSYAAVGFFLMPFATTAIIRWNRPYRCTMVLAGLLIFISCMTSAVVPSPGYLFLTHTLIHGLGSTLILCGTSLVTEEYFDRSHRFHVLATAFVSGGPYGVLIFGPLYSNLIQSYGWQVTFQLSGLLFLFVTCLAGVVFISRDIFEYNQAMLEISDTFEENTMNKALQKDSLLL--LNSPKASDGRGWAFCSVEHLKNNPQVFVWGFERLLHNLV---IYGLLMNMTAYVS----EALNDQLVLGARVNLYFGIGESVVFTLGALIGDRIRGYLAYAYLIGALFAALFLVIMQNTYEDLNVVY-------VLAGFTGATVGVGNTFLYATSEEIMMVHGSIAFPMTKMIAGIGMLLAPLFSGAIIDGFGYGGFFISMAILVSIRAILLGFI 454
BLAST of SMED30032324 vs. TrEMBL
Match: A0A183A5S6 (MFS domain-containing protein OS=Echinostoma caproni OX=27848 GN=ECPE_LOCUS2311 PE=4 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 3.649e-23 Identity = 119/453 (26.27%), Postives = 185/453 (40.84%), Query Frame = 1 Query: 262 IFACALS-ITVAAKIRFTPVISHALSVHFNNKFPQAQMEWIGRLYAIIVLCMLPIVTGVIDYYKIGYRFALCISGLMHMIACITNSTVVHPLFFVLTDSFICGFGSAISFAVFLLAVDDIFPKGNRFRVPATALCQGSTIGSLFILDLFAYLAKHLGWMMLQLCLAGLFSIEAAMLILT-CPEHGLKVR--VKQRGGSKGLSDKSLELESFQKPEITPNKLLGLTFIEMNY---SPSVFPWLVYRFFMTIIHQGV------FTLVLTDSHLITTPDIDILMPQYYATTLSALLYASGESLFYLLGAAFGYFILGYL-LHVSIG-FLCILFLVTVTWQPVRLQMAQSMMVGNAVCACLTGVCIGALGTCLIAASEEATMIPGRKIFPFVKLIEGLAFTFSPFLFDILNKISEQNIWLLTFSVLTAANACLLVF---ILHRLYTKYLENSKDSKM 1566 +F AL+ I + K R + AL +N +++ WIG YA + ++P T +I YRF + ++G+ ++C+T++TV P + LT + + G GS + L D F K +RF V ATA G G L LF++ +H W + LF + +T P H + + V + G + L P + + G F M + +P VF W RF I+ G+ + D+ LI ++ L + GESL + +GA G I GYL L IG LFL+ V + + V A TG +G T L A +EE ++ G FP K+I G+ +P L + + ++ +VL LL ILHR K++ KM Sbjct: 40 LFVSALNVICIGGKRRAFGIFVAALHTAYNET-SMSELNWIGDSYASLGFFLMPFATTIIVQSNRPYRFTMFLAGVTIFVSCMTSATVPDPGYLFLTHTLLHGIGSTLVLCGTSLVTGDYFDKTHRFHVLATAFVSGGPYGVLVFGPLFSHWIQHYSWQQAFIYSGILFLFVTWLGAITFLPRHMVDYQQAVTENQNKTGEQNSQAPLLLRNAPRASDGR--GWAFCSMAHLRANPQVFLWGFERFLHNIVIYGLLMNLTAYVSQALDNELIRGAKVN-------------LYFGIGESLIFTIGALIGDRIRGYLPLTYLIGAAFAALFLLIVQKSYTDINVVY-------VLAGFTGGAVGVGNTFLYATAEEVMLVHGSIAFPMTKMIAGIGMLVAPALSGSIIDGYGYRGFFISMAVLVCLRVALLTLICIILHRKKQKFMLEEMQRKM 469
BLAST of SMED30032324 vs. TrEMBL
Match: A0A183REE3 (MFS domain-containing protein OS=Schistosoma rodhaini OX=6188 PE=4 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 4.838e-23 Identity = 105/424 (24.76%), Postives = 178/424 (41.98%), Query Frame = 1 Query: 283 ITVAAKIRFTPVISHALSVHFNNKFPQAQMEWIGRLYAIIVLCMLPIVTGVIDYYKIGYRFALCISGLMHMIACITNSTVVHPLFFVLTDSFICGFGSAISFAVFLLAVDDIFPKGNRFRVPATALCQGSTIGSLFILDLFAYLAKHLGWM----------MLQLCLAGLFSIEAAMLILTCPEHGLKVRVKQRGGSKGLSDKSLELESFQKPEITPNKLLGLTFIE-MNYSPSVFPWLVYRFFMTIIHQGVFTLVLTDSHLITTPDIDILMPQYYATTLSALLYASGESLFYLLGAAFGYFILGYLLHVSI--GFLCILFLVTVTWQPVRLQMAQSMMVGNAVCACLTGVCIGALGTCLIAASEEATMIPGRKIFPFVKLIEGLAFTFSPFLFDILNKISEQNIWLLTFSVLTAANACLLVFI 1515 + + K R + AL +N+ ++ W+G YA + ++P T I + YR + ++GL+ I+C+T++ V P + LT + I G GS + L ++ F + +RF V ATA G G L L++ L + GW +L CLAG+ I + + ++ +K L SL L + P+ + + +E + +P VF W R ++ ++ L++ + ++ + L Q L + GES+ + LGA G I GYL + + LFLV + L + V A TG +G T L A SEE M+ G FP K+I G+ +P + + ++ ++L + A LL FI Sbjct: 48 VCIGGKRRAFGIFVAALHKAYNDT-SMTELNWVGDSYAAVGFFLMPFATTAIIRWNRPYRCTMVLAGLLIFISCMTSAVVPSPGYLFLTHTLIHGLGSTLILCGTSLVTEEYFDRSHRFHVLATAFVSGGPYGVLIFGPLYSNLIQSYGWQVTFQLSGLLFLLVTCLAGVVFISRDIFEYNQAMLEISDTFEENTMNKALRKDSLLLHN--SPKASDGRRWAFCSVEHLKNNPQVFVWGFERLLHNLV---IYGLLMNMTAYVS----EALNDQLVMGARVNLYFGIGESVVFTLGALIGDRIRGYLAYAYLIGALFAALFLVIMQNTYEDLNVVY-------VLAGFTGATVGVGNTFLYATSEEIMMVHGSIAFPMTKMIAGIGMLLAPLFSGAIIDGFGYGGFFISMAILVSIRAILLGFI 454
BLAST of SMED30032324 vs. TrEMBL
Match: C1LE48 (Major facilitator superfamily OS=Schistosoma japonicum OX=6182 PE=2 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.234e-22 Identity = 116/492 (23.58%), Postives = 205/492 (41.67%), Query Frame = 1 Query: 199 EKVFNTDVVNWQIRVRLVLFS--------IFACALSIT-VAAKIRFTPVISHALSVHFNNKFPQAQMEWIGRLYAIIVLCMLPIVTGVIDYYKIGYRFALCISGLMHMIACITNSTVVHPLFFVLTDSFICGFGSAISFAVFLLAVDDIFPKGNRFRVPATALCQGSTIGSLFILDLFAYLAKHLGWMM-LQL---------CLAGLFSIEAAMLILTCPEHGLKVRVKQRGGSKGLSDKSLELESF---QKPEITPNKLLGL-TFIEMNYSPSVFPWLVYRFFMTIIHQGVFTLVLTDSHLITTPDIDILMPQYYATTLSALLYASGESLFYLLGAAFGYFILGYL---LHVSIGFLCILFLV-TVTWQPVRLQMAQSMMVGNAVCACLTGVCIGALGTCLIAASEEATMIPGRKIFPFVKLIEGLAFTFSPFLFDILNKISEQNIWLLTFSVLTAANACLL---VFILHRLYTKYLENSKDSKMTIQVSM 1584 + +F+T V++ R RL L+ + AL++ + K R + AL +N+ ++ W+G YA + ++P T I YRF + ++G++ ++C+T++ V P + LT + I G GS + L + F K +RF V ATA G G L L++ L ++ GW + QL CLAG+ I M E+ + + DKSL +S P+ + + +F + +P VF W R ++ ++ L++ + ++ L Q L + GES+ + +GA G I GYL + F + L+ T++ + + V A G +G T L A SEE ++ G FP K+I G+ +P + + ++ +VL + LL +ILHR ++ K+ T + ++ Sbjct: 12 QSIFHTIYVHFS-RARLKLYGWRHLGWLVLLVAALNVVCIGGKRRAFGIFVAALHKAYNDT-SMTELNWVGDSYAAVGFFLMPFATTAIIRLNRPYRFTMLLAGILIFVSCMTSAAVPSPGYLFLTHTLIHGIGSTLILCGTSLVTGEYFDKSHRFHVLATAFVSGGPYGVLIFGPLYSNLIQNYGWQVAFQLSGLLFLFVTCLAGIVFISRDMF-----EYHQAISETFEASEENTLDKSLRRDSLLLRNSPKASDGRGWAFCSFEHLKNNPQVFVWGFERLLHNLV---IYGLLMNMTAYVSQA----LNDQLVLGARVNLYFGIGESVVFTVGALIGDRIRGYLAFAYFIGASFAALFLLIMQNTYEDINVVY---------VLAGFAGATVGVGNTFLYATSEEIMLVHGSIAFPMTKMIAGIGMLLAPLFSGAIIDGFGYGGFFISMAVLVSIRVILLGVICYILHRKKKLIIDTEKEHASTNENNL 480
BLAST of SMED30032324 vs. TrEMBL
Match: A0A4Z2DS50 (Major facilitator superfamily OS=Schistosoma japonicum OX=6182 GN=EWB00_009543 PE=4 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 1.403e-22 Identity = 116/492 (23.58%), Postives = 205/492 (41.67%), Query Frame = 1 Query: 199 EKVFNTDVVNWQIRVRLVLFS--------IFACALSIT-VAAKIRFTPVISHALSVHFNNKFPQAQMEWIGRLYAIIVLCMLPIVTGVIDYYKIGYRFALCISGLMHMIACITNSTVVHPLFFVLTDSFICGFGSAISFAVFLLAVDDIFPKGNRFRVPATALCQGSTIGSLFILDLFAYLAKHLGWMM-LQL---------CLAGLFSIEAAMLILTCPEHGLKVRVKQRGGSKGLSDKSLELESF---QKPEITPNKLLGL-TFIEMNYSPSVFPWLVYRFFMTIIHQGVFTLVLTDSHLITTPDIDILMPQYYATTLSALLYASGESLFYLLGAAFGYFILGYL---LHVSIGFLCILFLV-TVTWQPVRLQMAQSMMVGNAVCACLTGVCIGALGTCLIAASEEATMIPGRKIFPFVKLIEGLAFTFSPFLFDILNKISEQNIWLLTFSVLTAANACLL---VFILHRLYTKYLENSKDSKMTIQVSM 1584 + +F+T V++ R RL L+ + AL++ + K R + AL +N+ ++ W+G YA + ++P T I YRF + ++G++ ++C+T++ V P + LT + I G GS + L + F K +RF V ATA G G L L++ L ++ GW + QL CLAG+ I M E+ + + DKSL +S P+ + + +F + +P VF W R ++ ++ L++ + ++ L Q L + GES+ + +GA G I GYL + F + L+ T++ + + V A G +G T L A SEE ++ G FP K+I G+ +P + + ++ +VL + LL +ILHR ++ K+ T + ++ Sbjct: 12 QSIFHTIYVHFS-RARLKLYGWRHLGWLVLLVAALNVVCIGGKRRAFGIFVAALHKAYNDT-SMTELNWVGDSYAAVGFFLMPFATTAIIRLNRPYRFTMLLAGILIFVSCMTSAAVPSPGYLFLTHTLIHGIGSTLILCGTSLVTGEYFDKSHRFHVLATAFVSGGPYGVLIFGPLYSNLIQNYGWQVAFQLSGLLFLFVTCLAGIVFISRDMF-----EYHQAISETFEASEENTLDKSLRRDSLLLRNSPKASDGRGWAFCSFEHLKNNPQVFVWGFERLLHNLV---IYGLLMNMTAYVSQA----LNDQLVLGARVNLYFGIGESVVFTVGALIGDRIRGYLAFAYFIGASFAALFLLIMQNTYEDINVVY---------VLAGFAGATVGVGNTFLYATSEEIMLVHGSIAFPMTKMIAGIGMLLAPLFSGAIIDGFGYGGFFISMAVLVSIRVILLGVICYILHRKKKLIIDTEKEHASTNENNL 480
BLAST of SMED30032324 vs. Planmine SMEST
Match: SMESG000079516.1 (SMESG000079516.1) HSP 1 Score: 997.268 bits (2577), Expect = 0.000e+0 Identity = 500/501 (99.80%), Postives = 501/501 (100.00%), Query Frame = 1 Query: 118 MQDENEIPXXXXXXXXXXXXFNSIHEEEKVFNTDVVNWQIRVRLVLFSIFACALSITVAAKIRFTPVISHALSVHFNNKFPQAQMEWIGRLYAIIVLCMLPIVTGVIDYYKIGYRFALCISGLMHMIACITNSTVVHPLFFVLTDSFICGFGSAISFAVFLLAVDDIFPKGNRFRVPATALCQGSTIGSLFILDLFAYLAKHLGWMMLQLCLAGLFSIEAAMLILTCPEHGLKVRVKQRGGSKGLSDKSLELESFQKPEITPNKLLGLTFIEMNYSPSVFPWLVYRFFMTIIHQGVFTLVLTDSHLITTPDIDILMPQYYATTLSALLYASGESLFYLLGAAFGYFILGYLLHVSIGFLCILFLVTVTWQPVRLQMAQSMMVGNAVCACLTGVCIGALGTCLIAASEEATMIPGRKIFPFVKLIEGLAFTFSPFLFDILNKISEQNIWLLTFSVLTAANACLLVFILHRLYTKYLENSKDSKMTIQVSMRPVTLLSKFDSS 1620 MQDENEIPKRKLSLKKSRKKFNSIHEEEKVFNTDVVNWQIRVRLVLFSIFACALSITVAAKIRFTPVISHALSVHFNNKFPQAQMEWIGRLYAIIVLCMLPIVTGVIDYYKIGYRFALCISGLMHMIACITNSTVVHPLFFVLTDSFICGFGSAISFAVFLLAVDDIFPKGNRFRVPATALCQGSTIGSLFILDLFAYLAKHLGWMMLQLCLAGLFSIEAAMLILTCPEHGLKVRVKQRGGSKGLSDKSLELESFQKPEITPNKLLGLTFIEMNYSPSVFPWLVYRFFMTIIHQGVFTLVLTDSHLITTPDIDIL+PQYYATTLSALLYASGESLFYLLGAAFGYFILGYLLHVSIGFLCILFLVTVTWQPVRLQMAQSMMVGNAVCACLTGVCIGALGTCLIAASEEATMIPGRKIFPFVKLIEGLAFTFSPFLFDILNKISEQNIWLLTFSVLTAANACLLVFILHRLYTKYLENSKDSKMTIQVSMRPVTLLSKFDSS Sbjct: 1 MQDENEIPKRKLSLKKSRKKFNSIHEEEKVFNTDVVNWQIRVRLVLFSIFACALSITVAAKIRFTPVISHALSVHFNNKFPQAQMEWIGRLYAIIVLCMLPIVTGVIDYYKIGYRFALCISGLMHMIACITNSTVVHPLFFVLTDSFICGFGSAISFAVFLLAVDDIFPKGNRFRVPATALCQGSTIGSLFILDLFAYLAKHLGWMMLQLCLAGLFSIEAAMLILTCPEHGLKVRVKQRGGSKGLSDKSLELESFQKPEITPNKLLGLTFIEMNYSPSVFPWLVYRFFMTIIHQGVFTLVLTDSHLITTPDIDILLPQYYATTLSALLYASGESLFYLLGAAFGYFILGYLLHVSIGFLCILFLVTVTWQPVRLQMAQSMMVGNAVCACLTGVCIGALGTCLIAASEEATMIPGRKIFPFVKLIEGLAFTFSPFLFDILNKISEQNIWLLTFSVLTAANACLLVFILHRLYTKYLENSKDSKMTIQVSMRPVTLLSKFDSS 501
BLAST of SMED30032324 vs. Planmine SMEST
Match: SMESG000026518.1 (SMESG000026518.1) HSP 1 Score: 83.9593 bits (206), Expect = 4.936e-17 Identity = 87/374 (23.26%), Postives = 151/374 (40.37%), Query Frame = 1 Query: 340 HFNNKFPQ---AQMEWIGRLYAIIVLCMLPIVTGVIDYYKIGYRFALCISGLMHMIACITNSTVVHPLFFVLTDSFICGFGSAISFAVFLLAVDDIFPKGNRFRVPATALCQGSTIGSLFILDLFAYLAKHLGWMMLQLCLAGLFSIEAAMLILTCPEHGLKVRVK---QRGGSKGLSDKSLELESFQKPEITPNKLLGLTFIEMNYSPSVFPWLVYRFFMTIIHQGVFTLVLTDSHLITTPDIDILMPQYYATTLSALLYASGESLFYLLGAAFGYFI-------LGYLLHVSIGFLCILFLVTVTWQPVRLQMAQSMMVGNAVCACLTGVCIGALGTCLIAASEEATMIPGRKIFPFVKLIEGLAFTFSPFL 1422 FN ++P ++ WIG Y+ + +I Y+ Y + L +I+CIT+S V +P + LT + G GS++ + L V++ F K +R+ + AT L G ++ S+ + LF++L + W G I + + C + R + S G S S + T+I P + W V R +++ G+ + T S+ +D +++S +L+ASGE+ YL+GA L Y+L V+ +C ++ ++ + + + V G +G T L A EE T +PG +PF G SP L Sbjct: 44 QFNKEYPNISLTELNWIGDSYSAFGYMSTSLTVTIIIYFNRRYGLFQFLGALWVLISCITSSFVPNPHWLFLTHTLFHGIGSSLIISTAGLVVNEYFDKKHRYHILATTLVSGGSVASILFVMLFSFLIQKYTW-------EGALQILGVLYFIVCGCAAIFFRKNPDLKEVSSTGKSKYSCQ-----------------TYIRWKNIPLLILWFVDRVLTSVVTYGLLLNLTTHSYEKHYSLVD--------SSISTVLFASGEASTYLIGAIIMAITKDLFKERLRYVLLVTSFTMCASLILIYFFEANKTVLRSLLFVA--------GFSLGPSITFLFPAGEELTRLPGHVAYPFSLGGMGFGMMISPLL 377
BLAST of SMED30032324 vs. Planmine SMEST
Match: SMESG000026692.1 (SMESG000026692.1) HSP 1 Score: 83.1889 bits (204), Expect = 9.942e-17 Identity = 96/385 (24.94%), Postives = 167/385 (43.38%), Query Frame = 1 Query: 349 NKFPQAQMEWIGRLYAIIVLCMLPIVTGVIDYYKIGYRFALCISGLMHMIACITNSTVVHPLFFVLTDSFICGFGSAISFAVFLLAVDDIFPKGNRFRVPATALCQGSTIGSLFILDLFAYLAKHLGWMMLQLCLAGLFSIEAAMLILTCPEHGLKVRVKQRGGSKGLSDKS-----LELESFQKPEITPNKLLGLTFIEMNYSPSVFPWLVYRFFMTIIHQGVFTLVLTDSHLITTPDIDILMPQYYATTLSALLYASGESLFYLLGA-------AFGYFILGYLLHVSIGFLCILFLVTVTWQPVRLQMAQSMMVGNAVCACLTGVCIGALGTCLIAASEEATMIPGRKIFPFVKLIEGLAFTFSPFLFDILNKISEQNIWLL 1467 N A++ WIG YA + + T +I YR I + ++AC+T++ V + + LT + + GFGS++ + L V++ F K + + AT L G ++ S+ + +AYL GW + L ++ + + + C K K +GLS KS +++S Q P + +F W + R +I+ G+ L L D + + +T+L+ +L+A+GE+ YL+G F + L Y+L VS + + V W+ V S ++ A ++G C+G T L A EE T +PG +PF G+ SP L ++ +I + N + L Sbjct: 51 NSTSLAELNWIGDSYAALGYISTTLSTALILRSNRRYRLFQFIGAFLILLACLTSAVVPNAHWLFLTHTVLHGFGSSLILSTVGLIVNEYFDKNHPRHILATTLVSGGSVASIVFVQFYAYLIVDYGWRKAFVILGLIYFV---VNLSACFVFARKFSNKSE---EGLSKKSSVNVCRDIKSSQIPLL------------------IF-WTIDRIMTSIVTYGML-LNLADYMRRSESKLT------NSTSLT-VLFAAGEASTYLIGTIITGLTKKFFHNRLKYILLVSTFLMAVSL---VYWEFVSSNKHLSRLL-----AFVSGFCLGPSITFLFPAGEEMTTLPGHMAYPFSLFGMGIGMAVSPILTALIAQIFDYNWFFL 394
BLAST of SMED30032324 vs. Planmine SMEST
Match: SMESG000026516.1 (SMESG000026516.1) HSP 1 Score: 77.7962 bits (190), Expect = 5.174e-15 Identity = 85/394 (21.57%), Postives = 165/394 (41.88%), Query Frame = 1 Query: 340 HFNNKFPQ---AQMEWIGRLYAIIVLCMLPIVTGVIDYYKIGYRFALCISGLMHMIACITNSTVVHPLFFVLTDSFICGFGSAISFAVFLLAVDDIFPKGNRFRVPATALCQGSTIGSLFILDLFAYLAKHLGWMMLQLCLAGLFSIEAAMLILTCPEHGLKVRVKQRGGSKGLSDKSLELESFQKPEITPNKLLGLTFIEMNYSPSVFPWLVYRFFMTIIHQGVFTLVLTDSHLITTPDIDILMPQYYATTLSALLYASGESLFYLLGAAFGYFILGYLLHVSIGFLCILFLVTVTWQPVRLQMAQSMMVGNAVCACLTGVCIGALGTCLIAASEEATMIPGRKIFPFVKLIEGLAFTFSPFLFDILNKISEQNIWLLTFSVLTAANACLLVF 1512 F+ ++P ++ WIG Y+ I + +I Y+ Y + L +I+CIT+S V +P + LT + G GS++ + L V++ F K +R+ + AT L G ++ S+ + LF+ L +H GW + L ++ + ++ ++ + +G K L ++S Q P I +F W R +++ G+ L LTD D+ +++ +++ASGE++ YL+G+ I + ++ ++ ++++ + L+ ++ + G +G T L A EE T +PG +P G SP L + + I LL + C ++F Sbjct: 45 QFHKEYPNISLTELNWIGDSYSAIGYMSTSLSISIIIYFNRRYGLFQFLGALWVLISCITSSFVPNPHWLFLTHTLFHGIGSSLIISTAGLVVNEYFDKKHRYHILATTLVSGGSVASILFVTLFSKLIEHYGWRKTFIILGIIYFVVCSLAAFFFKKNKDLKEISSKG--KMLCQGQWNIKSIQIPLI------------------IF-WFTDRIMTSVVTYGLL-LNLTDYVYQGHKDL-------MKSSILTIIFASGEAVTYLIGSVITA-ITKDFFKEKLRYILLVTSLSMSICLIILEYTSHIVSIRRLLCFFAGFSLGPSITFLFPAGEEFTRLPGHLAYPVSLGGMGFGMIISPLL-------TAKIIELLDYRWFFFVQGCFILF 401
BLAST of SMED30032324 vs. Planmine SMEST
Match: SMESG000026519.1 (SMESG000026519.1) HSP 1 Score: 73.9442 bits (180), Expect = 8.349e-14 Identity = 88/364 (24.18%), Postives = 149/364 (40.93%), Query Frame = 1 Query: 367 QMEWIGRLYAIIVLCMLPIVTGVIDYYKIGYRFALCISGLMHMIACITNSTVVHPLFFVLTDSFICGFGSAISFAVFLLAVDDIFPKGNRFRVPATALCQGSTIGSLFILDLFAYLAKHLGWMMLQLCLAGLFSIEAAMLILTCPEHGLKVRVKQRGGSKGLSDKSLELESFQKPEITPNKLLGLTFIEMNYSPSVFPWLVYRFFMTIIHQGVFTLVLTDSHLITTPDIDILMPQYYATTLSALLYASGESLFYLLGAA------------FGYFILGYLLHVSIGFLCILFLVTVTWQPVRLQMAQSMMVGNAVCACLTGVCIGALGTCLIAASEEATMIPGRKIFPFVKLIEGLAFTFSPFL 1422 ++ WIG YA + I +I ++K Y + + +++C+T+S V +P + LT + G GS++ + L V+D F + + + AT L G ++ S+ + LFA L + GW + L L+ I A L + +V + K++ +I LL L W + R +++ G+ L LTD T ++ +TTL+ L+ASGE++ YL+GA Y +LG +SI C+ + L+ + ++ + L G +G T L A EE T +PG +P G SP L Sbjct: 56 ELNWIGDSYAAVGYMTSGISIAIILFFKRRYGMFQFMGAIWVLVSCVTSSFVPNPHWLFLTHTLFHGIGSSLIISTVGLVVNDHFDSKHPYHILATTLVSGGSVASIIFVTLFASLIQSYGWRYAFIILGCLYFIVNASAALFFRKSNNQVEDTNK--------KTVSCRCEGHIKIIHIPLLCL-------------WFIDRVMTSVVTYGLL-LNLTDYMYRTEKNL------VRSTTLTT-LFASGEAITYLIGATITAITRDFFKDKLRYILLGTSFAMSI---CL----------IALEYFKGIISVCYILCFLAGFTLGPSITFLFPAGEELTRLPGHMAYPISLAGMGFGMLVSPLL 377 The following BLAST results are available for this feature:
BLAST of SMED30032324 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SMED30032324 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30032324 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30032324 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of SMED30032324 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of SMED30032324 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SMED30032324 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of SMED30032324 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30032324 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of SMED30032324 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30032324 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30032324 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SMED30032324 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of SMED30032324 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30032324 ID=SMED30032324|Name=SMED30032324|organism=Schmidtea mediterranea sexual|type=transcript|length=1645bpback to top protein sequence of SMED30032324-orf-1 >SMED30032324-orf-1 ID=SMED30032324-orf-1|Name=SMED30032324-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=132bp IKYIAISYEESNLDNSVTGLIETCIVILLSLEFSRYFVYNLCRINTNKQAback to top protein sequence of SMED30032324-orf-2 >SMED30032324-orf-2 ID=SMED30032324-orf-2|Name=SMED30032324-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=502bp MQDENEIPKRKLSLKKSRKKFNSIHEEEKVFNTDVVNWQIRVRLVLFSIFback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
|