SMED30032285

Overview
NameSMED30032285
Smed IDSMED30032285
Length (bp)2377
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30032285 (SMED30032285) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30032285 (SMED30032285) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30032285 (SMED30032285) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30032285 (SMED30032285) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30032285

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 12

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
head regionSMED30032285SMESG000039943.1 SMESG000037686.1 SMESG000035410.1 SmedASXL_074389SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
nervous systemSMED30032285SMESG000037686.1 SMESG000035410.1 SMESG000013977.1 SMESG000013857.1 dd_Smed_v4_10407_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30032285SMESG000037686.1 SMESG000035410.1 SMESG000013977.1 SMESG000013857.1 dd_Smed_v4_10407_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30032285SMESG000037686.1 SMESG000035410.1 SMESG000013977.1 SMESG000013857.1 dd_Smed_v4_10407_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neuronSMED30032285SMESG000037686.1 SMESG000035410.1 SMESG000013977.1 SMESG000013857.1 dd_Smed_v4_10407_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		whole organism asexual adult colorimetric in situ hybridization evidence
neoblastSMED30032285SMESG000037686.1 SMESG000035410.1 SMESG000013977.1 SMESG000013857.1 dd_Smed_v4_10407_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30032285SMESG000037686.1 SMESG000035410.1 SMESG000013977.1 SMESG000013857.1 dd_Smed_v4_10407_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30032285SMESG000037686.1 SMESG000035410.1 SMESG000013977.1 SMESG000013857.1 dd_Smed_v4_10407_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cilated neuronSMED30032285SMESG000037686.1 SMESG000035410.1 SMESG000013977.1 SMESG000013857.1 dd_Smed_v4_10407_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated epidermisSMED30032285SMESG000037686.1 SMESG000035410.1 SMESG000013977.1 SMESG000013857.1 dd_Smed_v4_10407_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
testisSMED30032285SMESG000029692.1 SMESG000013977.1 SMESG000002488.1 SMED30024729smed_20140614PMID:20844018
Wang et al., 2010		whole organism adult hermaphrodite colorimetric in situ hybridization evidence
early male germ cellSMED30032285SMESG000029692.1 SMESG000013977.1 SMESG000002488.1 SMED30024729smed_20140614PMID:20844018
Wang et al., 2010		whole organism asexual adult cDNA to DNA expression microarray evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of SMED30032285 vs. Planmine SMEST
Match: SMESG000003311.1 (SMESG000003311.1)

HSP 1 Score: 105.531 bits (262), Expect = 7.739e-47
Identity = 53/65 (81.54%), Postives = 59/65 (90.77%), Query Frame = 2 
Query:  398 KRQNAQWENRKEALETKKRNLESDAEKLKAHENTTMLEKEVEDLIEEVN*LSYMLDGEMATTQEL 592
            +RQ AQWEN+KEAL+TK RNLESD E+LKAHENTTML+KEVEDL  +VN LSYMLDGEMATTQEL
Sbjct:   76 QRQKAQWENKKEALKTKVRNLESDVERLKAHENTTMLKKEVEDLTGKVNQLSYMLDGEMATTQEL 140

HSP 2 Score: 102.449 bits (254), Expect = 7.739e-47
Identity = 55/69 (79.71%), Postives = 57/69 (82.61%), Query Frame = 3 
Query:  165 MQKQLKITE*REEDSKSILAIRENEITVAQRTSRKLSRLKEQNQP*VEIEQSRSEHDERDVVGYKDMCD 371
            MQKQLK  + REEDSK ILAIRENEITVAQRT RKLS L EQNQ  VEIE SR EH ERDVVGYKDMC+
Sbjct:    1 MQKQLKKAKEREEDSKLILAIRENEITVAQRTFRKLSGLNEQNQLQVEIEHSRLEHAERDVVGYKDMCE 69

HSP 3 Score: 69.3218 bits (168), Expect = 1.438e-17
Identity = 41/69 (59.42%), Postives = 48/69 (69.57%), Query Frame = 2 
Query: 1136 NELTTKWTRYVQENHWKVQAKRIQKKNISKNKETKPSI*KARRIRNETV--*KKSATAQTTNTNIERDK 1336
            +EL  KWTRYVQE HWKVQAKRIQ+    K ++TK      R++    +   KKSATAQTTNTNIERDK
Sbjct:  224 DELVAKWTRYVQEKHWKVQAKRIQR----KYRKTKRLNRAYRKLEGYAMKQYKKSATAQTTNTNIERDK 288

HSP 4 Score: 40.0466 bits (92), Expect = 1.438e-17
Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:  994 QSRNLIEALKRKRDVMKRQRKEVEDENEWLRQNVEVSKGWKEKVDEL 1134
            QSR L + LK +  ++ +Q K +E+ENE LRQ +EV KG +EKVDEL
Sbjct:  181 QSRKLFKTLKEECLILNKQ-KNLEEENELLRQQMEVCKGLEEKVDEL 226
[Close]
BLAST of SMED30032285 vs. Planmine SMEST
Match: SMESG000009758.1 (SMESG000009758.1)

HSP 1 Score: 164.081 bits (414), Expect = 2.482e-42
Identity = 108/135 (80.00%), Postives = 122/135 (90.37%), Query Frame = 1 
Query:  733 MNSQIELTTIEVESGETIINESVNIKLIKIEVENEFSIPMECKIXXXXXXXXXXXXXXXXXXXXIKNMKIAREQQIQEIDCMTNQRFQSRNLIEALKRKRDVMKRQRKEVEDENEWLRQNVEVSKGWKEKVDELK 1137
            +   IELTTIEVESGET INE   IK +K+EVENEF I M+CKIEESMEVESSMEVESSEQEEMIKNMKIA EQQIQEIDCMTNQ FQSRNLI+ALKR+RDV+KRQRKEVEDEN+WL+QN+EV+KGW+E ++ELK
Sbjct:  492 LTGTIELTTIEVESGETTINEG--IKPLKMEVENEFPISMKCKIEESMEVESSMEVESSEQEEMIKNMKIAMEQQIQEIDCMTNQWFQSRNLIKALKRERDVLKRQRKEVEDENKWLKQNIEVNKGWEEGIEELK 624

HSP 2 Score: 86.6557 bits (213), Expect = 6.855e-32
Identity = 56/111 (50.45%), Postives = 72/111 (64.86%), Query Frame = 3 
Query:   54 KRKYQETARELKELPQKWTPLD----VWKMWEQDQMKIINEMQKQL-KITE*REEDSKSILAIRENEITVAQRTSRKLSRLKEQNQP*VEIEQSRSEHDERDVVGYKDMCD 371
            +R+Y E  R + EL  K T  D    +WK   +++ +    +   + ++ E REEDSK ILAI+ENEITVAQRT RK S L EQNQ  VEIEQ   EH ERD++GYKDMC+
Sbjct:  332 RRQYIEQIRIISELIVKVTKQDENIIMWKQVAENKSRESETLTTTVHRLKEEREEDSKLILAIQENEITVAQRTFRKRSGLNEQNQLQVEIEQLHPEHAERDLIGYKDMCE 442

HSP 3 Score: 70.8626 bits (172), Expect = 6.855e-32
Identity = 35/44 (79.55%), Postives = 40/44 (90.91%), Query Frame = 2 
Query:  398 KRQNAQWENRKEALETKKRNLESDAEKLKAHENTTMLEKEVEDL 529
            +RQ AQWEN+ EALETK RNLES+ E+LKAHENTTML+KEVEDL
Sbjct:  449 QRQKAQWENKNEALETKVRNLESEVERLKAHENTTMLKKEVEDL 492
[Close]
BLAST of SMED30032285 vs. Planmine SMEST
Match: SMESG000077415.1 (SMESG000077415.1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.011e-35
Identity = 45/55 (81.82%), Postives = 47/55 (85.45%), Query Frame = 1 
Query: 1561 KITLFLLFTFVNKSNSNLQKIQEALDSIQTIKSELIRIQEYLLPKSLCKNLNPHL 1725
            +ITL LLFT VNK NSNLQK QEALDSIQTIKSEL  I+EYLL KSLCKNLN HL
Sbjct:  517 QITLLLLFTLVNKLNSNLQKFQEALDSIQTIKSELTTIKEYLLRKSLCKNLNLHL 571

HSP 2 Score: 81.6481 bits (200), Expect = 4.011e-35
Identity = 70/101 (69.31%), Postives = 76/101 (75.25%), Query Frame = 2 
Query: 1715 IHTYQKMNQLYLLENALSQISIPSSHPTPENPKPNKFEXXXXXXXXXXXXXXXXXXXXXXXQTAKSYQNLKLIDIGEEENNTIKLFVSKKPINPNPQYQNN 2017
            +H  QK+NQL  LEN   QISIPSS PT ENPKPNKFEIT+LCLGIV IVVLI+AII K IQT KSYQNLKLID GE + N  K   + KP N N QYQNN
Sbjct:  569 LHLLQKINQLSQLENTFLQISIPSSPPTLENPKPNKFEITMLCLGIVQIVVLIIAIIYKTIQTVKSYQNLKLIDTGEGDQNNQKTRFT-KPANLNYQYQNN 668
[Close]
BLAST of SMED30032285 vs. Planmine SMEST
Match: SMESG000043940.1 (SMESG000043940.1)

HSP 1 Score: 124.405 bits (311), Expect = 1.897e-32
Identity = 84/170 (49.41%), Postives = 105/170 (61.76%), Query Frame = 3 
Query: 1236 LNRAYRKLEGYAMKQYKKKVQQHKPQIRILKETNENQRSMIEEKEKVITLIPEMTNRLIRAELMSMKSQTLDDQSETNPE*NKCKTKPYIKVDKNKMNICKQRKKNLCQNHLIPTLHLREQI----KLKPSKNSRSPRFNPNNQVRTHPNPRISSSKILMQKPQSTPIRK 1733
            LNRAY+ LE YA++Q   K+Q+   Q R+L + N   R ++EEKEK IT I EMTNRL+RAELM   + T +++ ET P                K+N   Q +  L Q   IP+ H   +     K +P +N RSP FNPNNQV+THPNPRISS KILMQKPQSTPIRK
Sbjct:  586 LNRAYQGLEKYAIRQ-NNKMQKLNEQARVLTKNNRELRIILEEKEKYITTILEMTNRLMRAELMLRNNPTPNNRDETKPR---------------KINQLSQLENTLSQIS-IPSSHPTPENPKPNKFEPLENPRSPLFNPNNQVKTHPNPRISSPKILMQKPQSTPIRK 738

HSP 2 Score: 32.7278 bits (73), Expect = 1.897e-32
Identity = 16/23 (69.57%), Postives = 19/23 (82.61%), Query Frame = 1 
Query: 1066 DENEWLRQNVEVSKGWKEKVDEL 1134
            +ENE LRQ +EV KG +EKVDEL
Sbjct:  536 EENELLRQQMEVCKGLEEKVDEL 558

HSP 3 Score: 22.7126 bits (47), Expect = 1.897e-32
Identity = 8/13 (61.54%), Postives = 9/13 (69.23%), Query Frame = 2 
Query: 1136 NELTTKWTRYVQE 1174
            +EL  KW RYV E
Sbjct:  556 DELVVKWARYVLE 568

HSP 4 Score: 61.2326 bits (147), Expect = 2.178e-9
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 2 
Query: 1727 QKMNQLYLLENALSQISIPSSHPTPENPKPNKFE 1828
            +K+NQL  LEN LSQISIPSSHPTPENPKPNKFE
Sbjct:  664 RKINQLSQLENTLSQISIPSSHPTPENPKPNKFE 697
[Close]
BLAST of SMED30032285 vs. Planmine SMEST
Match: SMESG000035410.1 (SMESG000035410.1)

HSP 1 Score: 121.324 bits (303), Expect = 4.543e-31
Identity = 101/254 (39.76%), Postives = 130/254 (51.18%), Query Frame = 3 
Query: 1236 LNRAYRKLEGYAMKQYKKKVQQHKPQIRILKETNENQRSMIEEKEKVITLIPEMTNRLIRAELMSMKSQTLDDQSETNPE*NKCKTKPYIKVDKNKMNICKQRKKNLCQNHLIPTLHLREQI----KLKPSKNSRSPRFNPN-----------------------------NQV-------------RTHP---NPRISSSKILM--QKPQSTPIRK*TNSIFSKTPSRKYQYRHLTQPLKIRNQINSKLPYSV 1844
            LNRAY+ LE YA++Q   K+Q+   Q R+L + N   R ++EEKEK IT I EM NRL+RAELM   + T +++ ET P                K+N   Q +  L Q   IP+ H   +     K +P +N R P   P                              NQ+              +HP   NP+ +  +I+M  +  QSTPIRK TNSIFSKTPSRKYQYRHLTQ +K+RNQINSKLPYSV
Sbjct:  498 LNRAYQGLEKYAIRQ-NNKMQKLNEQARVLTKNNRELRIILEEKEKYITTILEMKNRLMRAELMLRNNPTPNNRDETKPR---------------KINQLSQLENTLSQIS-IPSSHPTPENPKPNKFEPLENPRKPSIQPKQSSQNSTEPKNIFSENPYAKTSTHTYQKMNQLYFLENALSQISIPSSHPTPENPKPNKFEIIMPLENHQSTPIRKSTNSIFSKTPSRKYQYRHLTQLMKLRNQINSKLPYSV 734

HSP 2 Score: 33.113 bits (74), Expect = 4.543e-31
Identity = 16/23 (69.57%), Postives = 19/23 (82.61%), Query Frame = 1 
Query: 1066 DENEWLRQNVEVSKGWKEKVDEL 1134
            +ENE LRQ +EV KG +EKVDEL
Sbjct:  448 EENELLRQQMEVCKGLEEKVDEL 470

HSP 3 Score: 20.7866 bits (42), Expect = 4.543e-31
Identity = 9/21 (42.86%), Postives = 12/21 (57.14%), Query Frame = 2 
Query: 1136 NELTTKWTRYVQENHWKVQAK 1198
            +EL  KW RYV E    ++ K
Sbjct:  468 DELVVKWARYVLEEQKLIEFK 488

HSP 4 Score: 99.3673 bits (246), Expect = 3.966e-21
Identity = 46/50 (92.00%), Postives = 47/50 (94.00%), Query Frame = 2 
Query: 1679 NIFFQNPYAKTSIHTYQKMNQLYLLENALSQISIPSSHPTPENPKPNKFE 1828
            NIF +NPYAKTS HTYQKMNQLY LENALSQISIPSSHPTPENPKPNKFE
Sbjct:  633 NIFSENPYAKTSTHTYQKMNQLYFLENALSQISIPSSHPTPENPKPNKFE 682
The following BLAST results are available for this feature:
BLAST of SMED30032285 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032285 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032285 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032285 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032285 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032285 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032285 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032285 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032285 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032285 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032285 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032285 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032285 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30032285 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000003311.17.739e-4781.54SMESG000003311.1[more]
SMESG000009758.12.482e-4280.00SMESG000009758.1[more]
SMESG000077415.14.011e-3581.82SMESG000077415.1[more]
SMESG000043940.11.897e-3249.41SMESG000043940.1[more]
SMESG000035410.14.543e-3139.76SMESG000035410.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30032285 ID=SMED30032285|Name=SMED30032285|organism=Schmidtea mediterranea sexual|type=transcript|length=2377bp
TGGGACAAAGTGGAAGAGCCATAGTAGGGCTAAGGAAACAAGAAAGAACC
TGGAAGAGAAAATACCAGGAAACCGCAAGAGAGCTGAAGGAATTGCCGCA
AAAGTGGACACCTCTGGATGTTTGGAAAATGTGGGAACAAGACCAGATGA
AGATTATCAACGAGATGCAAAAACAATTAAAGATAACTGAATAGAGAGAA
GAGGATTCAAAATCGATCTTAGCAATTCGAGAAAACGAGATAACAGTGGC
GCAAAGAACATCTAGAAAACTATCAAGATTAAAGGAACAAAATCAACCGT
GAGTGGAAATAGAGCAGTCGCGCTCAGAACATGATGAACGAGATGTGGTA
GGATATAAGGACATGTGTGATAAAAGAAACAAATAGAGAAAGTGAGAAAA
AGGCAAAATGCACAATGGGAAAATAGGAAGGAGGCACTTGAGACGAAAAA
GAGAAACTTGGAAAGTGATGCCGAAAAGCTCAAGGCCCATGAAAATACTA
CTATGCTAGAAAAGGAAGTAGAGGATCTCATAGAAGAAGTAAACTAACTA
TCTTATATGTTGGATGGAGAAATGGCTACCACACAAGAATTGCGAGAAAA
ACGAAAACGAAAATATATATATATATATATAATCAGAAAATATATAAAAA
CCAGAAAAATGTATAAAACTCATAAAAAGATAAAATTCAGAAAAATCAGA
AAATCAAAACGATAATAAAAATAACAAAAATCATGAATAGTCAGATTGAA
CTAACAACCATAGAAGTGGAGTCCGGCGAGACCATTATCAACGAAAGTGT
AAATATCAAACTCATCAAAATTGAAGTGGAGAACGAGTTTTCAATACCTA
TGGAATGTAAAATCGAAGAATCAATGGAAGTAGAAAGTTCAATGGAAGTA
GAAAGTAGTGAACAAGAAGAGATGATAAAGAATATGAAAATAGCGAGGGA
ACAGCAAATCCAAGAAATAGATTGTATGACAAATCAACGGTTCCAATCGC
GAAACTTAATAGAGGCGTTAAAAAGAAAACGTGATGTAATGAAAAGACAA
CGAAAAGAAGTAGAAGATGAAAACGAGTGGTTAAGGCAAAACGTCGAAGT
AAGCAAGGGTTGGAAAGAAAAGGTAGATGAATTAAAATGAGCTAACGACC
AAATGGACAAGATACGTACAGGAAAATCACTGGAAAGTACAAGCAAAAAG
AATACAAAAAAAAAATATATCGAAAAACAAAGAGACTAAACCGAGCATAT
AGAAAGCTCGAAGGATACGCAATGAAACAGTATAAAAAAAAAGTGCAACA
GCACAAACCACAAATACGAATATTGAAAGAGACAAATGAGAATCAAAGAA
GTATGATTGAAGAAAAAGAGAAAGTCATCACCCTAATCCCCGAAATGACA
AATCGATTAATAAGAGCGGAGTTGATGTCGATGAAAAGTCAAACCCTAGA
CGATCAAAGTGAGACGAACCCAGAGTAAAATAAGTGCAAAACAAAACCGT
ATATAAAAGTGGACAAAAACAAAATGAACATCTGTAAACAGAGGAAAAAG
AACCTGTGTCAAAATCACCTTATTCCTACTCTTCACCTTCGTGAACAAAT
CAAACTCAAACCTTCAAAAAATTCAAGAAGCCCTCGATTCAATCCAAACA
ATCAAGTCAGAACTCATCCGAATCCAAGAATATCTTCTTCCAAAATCCTT
ATGCAAAAACCTCAATCCACACCTATCAGAAAATGAACCAACTCTATCTT
CTCGAAAACGCCCTCTCGCAAATATCAATACCGTCATCTCACCCAACCCC
TGAAAATCCGAAACCAAATAAATTCGAAATTACCATACTCTGTTTGGGAA
TCGTCTAAATCGTTGTCCTCATCCTTGCAATAATCTGCAAAATCATCCAG
ACCGCGAAATCCTATCAAAATCTCAAATTAATCGACATCGGAGAAGAAGA
GAACAACACAATCAAACTATTCGTTTCGAAAAAACCCATCAACCCGAATC
CGCAATACCAAAATAACTCAATAATAATCGATCAATTCCAATCGCAGTAA
TCTCACCCAGATCGCGAAATCTTACAGAAGATCCTAAATCAATCAACACC
CAAGAAGAAGAAATCGAAACAATCAAACAATTCGCTTCGTAAAGCCTACC
AACCCAAATCCTCAATATCAAAATAACTCTGCAACAATCAATCAACTCCA
GCTCATCGAATCTCAACCTAAACCAATCAACCAAGACAACGTCCCAGACC
CCAGTCACAGACACTAATCACAACGCGATTCGACTGATTCTAACGAACTT
CATCTTGTGTGTGTAAATAAAAACTCACTAACAGTATTGATTTATGTATA
AACATCCCATCACCTTAAGTGATGTCT
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protein sequence of SMED30032285-orf-1

>SMED30032285-orf-1 ID=SMED30032285-orf-1|Name=SMED30032285-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=136bp
MNSQIELTTIEVESGETIINESVNIKLIKIEVENEFSIPMECKIEESMEV
ESSMEVESSEQEEMIKNMKIAREQQIQEIDCMTNQRFQSRNLIEALKRKR
DVMKRQRKEVEDENEWLRQNVEVSKGWKEKVDELK*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000099neuron
PLANA:0000208testis
PLANA:0000418head
PLANA:0002030early male germ cell
PLANA:0002032epidermal cell
PLANA:0002063non-ciliated epidermis