FMN_red domain-containing protein

Overview
NameFMN_red domain-containing protein
Smed IDSMED30032272
Length (bp)788
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of FMN_red domain-containing protein (SMED30032272) t-SNE clustered cells

Violin plots show distribution of expression levels for FMN_red domain-containing protein (SMED30032272) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of FMN_red domain-containing protein (SMED30032272) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for FMN_red domain-containing protein (SMED30032272) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30032272

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 12

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
pharynxSMED30032272SMESG000023871.1 dd_Smed_v4_1834_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30032272SMESG000023871.1 dd_Smed_v4_1834_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30032272SMESG000023871.1 dd_Smed_v4_1834_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30032272SMESG000023871.1 dd_Smed_v4_1834_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neuronSMED30032272SMESG000023871.1 dd_Smed_v4_1834_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
whole organism asexual adult colorimetric in situ hybridization evidence
muscle cellSMED30032272SMESG000023871.1 dd_Smed_v4_1834_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
anterior sideSMED30032272SMESG000023871.1 dd_Smed_v4_1834_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cilated neuronSMED30032272SMESG000023871.1 dd_Smed_v4_1834_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30032272SMESG000023871.1 dd_Smed_v4_1834_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30032272SMESG000023871.1 dd_Smed_v6_1834_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017
whole organism asexual adult RNA-sequencing evidence
head regionSMED30032272SMESG000023871.1 OX_Smed_1.0.23441ox_Smed_v2PMID:24238224
Kao et al., 2013
whole organism asexual adult RNA-sequencing evidence
epidermisSMED30032272SMESG000023871.1 dd_Smed_v4_1834_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017
whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of FMN_red domain-containing protein vs. TrEMBL
Match: A0A5J4N8B1 (FMN_red domain-containing protein OS=Paragonimus westermani OX=34504 GN=DEA37_0011101 PE=4 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 9.003e-38
Identity = 86/198 (43.43%), Postives = 126/198 (63.64%), Query Frame = 1
Query:   43 KLLIFLSSVRDSRNAERVYKMALRLATEKGFSVDVMDXXXXXXXXXXXXXHFYPDQS-KAPQQLHVLNQKVMFADCYLMITGEYNYGVPPALLNLIDHFPPPSFAFKPAGILSYSAGQGGRHSSSHLEHTLTGIGCLVQPFIVNISVVQDTVTAEGDAHGGHT-EDNIKILLDQIEFVGLALKQQKQSGKVKQPRLNN 630
            + L+F SSVR  R  +RV K+A R    KG SV V+DPL   LPL+ NP HFY + + +AP+QL  L + V  AD  +  T EYN  +PPAL NLIDH P  ++AFKP GI++YS G GG+ S++ L   L+ +GCLV P  V IS V  T++A+G+  G  T    + +++DQ+E++G A+K  + S   + P++++
Sbjct:    9 RTLLFASSVRPGRMNDRVLKLAERRLELKGHSVTVVDPLHWTLPLIVNPWHFYANPAEQAPKQLKDLFELVSSADRLIFTTAEYNRSIPPALSNLIDHLPHSAYAFKPTGIIAYSVGSGGQLSAAQLRLMLSDLGCLVVPHHVVISNVDRTISADGEPSGRKTIIGEVDLMIDQVEYIGNAIKCNRTSTCAEPPKVHS 206          
BLAST of FMN_red domain-containing protein vs. TrEMBL
Match: A0A1S3KEB9 (uncharacterized protein LOC106181199 OS=Lingula unguis OX=7574 GN=LOC106181199 PE=4 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 6.570e-33
Identity = 74/187 (39.57%), Postives = 111/187 (59.36%), Query Frame = 1
Query:   40 LKLLIFLSSVRDSRNAERVYKMALRLATEKGFSVDVMDXXXXXXXXXXXXXHFYPDQSKAPQQLHVLNQKVMFADCYLMITGEYNYGVPPALLNLIDHFPPPSFAFKPAGILSYSAGQ-GGRHSSSHLEHTLTGIGCLVQPFIVNISVVQDTVTAEGDAHGGHTEDNIKILLDQIEFVGLALKQQKQ 597
            LK+++FL SVRD+R  ERV      +  E    V++MDP+K   P+LK PLH Y D+SKAPQ L   N K+  AD ++++T EYN+ +PPAL N++DHF    +++KP+GI+ YS GQ GG  ++  L   L  +GCL    I  I  V + ++ EG+    H       LL Q+++   A+K  ++
Sbjct:    6 LKVVLFLGSVRDNRLGERVATFMKNILVETNHEVEIMDPMKTEFPMLKKPLHHYQDKSKAPQFLQDCNAKIQAADAFVVVTAEYNHSIPPALSNMMDHFGSSGYSYKPSGIVCYSPGQYGGMRAAMQLRSFLGELGCLSVSNIFGIPQVMEAISPEGEPQNEHMRKGALRLLAQLDWHAQAMKNHRE 192          
BLAST of FMN_red domain-containing protein vs. TrEMBL
Match: K1PHZ2 (Uncharacterized protein yieF OS=Crassostrea gigas OX=29159 GN=CGI_10012025 PE=4 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 4.796e-32
Identity = 72/188 (38.30%), Postives = 109/188 (57.98%), Query Frame = 1
Query:   40 LKLLIFLSSVRDSRNAERVYKMALRLATEKGFSVDVMDXXXXXXXXXXXXXHFYPDQSKAPQQLHVLNQK-VMFADCYLMITGEYNYGVPPALLNLIDHFPPPSFAFKPAGILSYSAGQGGRHSSSHLEHTLTG-IGCLVQPFIVNISVVQDTVTAEGDAHGGHTEDNIKILLDQIEFVGLALKQQKQ 597
            LK+L+ L S+RD R   RV K   R   E+ F V   DP++   PL+  P+HFY  + K    + V N+K V  AD Y++++ EYN+ VPPAL NL+D FP  ++++KP+G++ YS GQ G   ++     +TG +GCL    I  I  VQ+    EG+    H E   K +LDQ+E++  A+K  ++
Sbjct:    7 LKVLLILGSIRDGRQGLRVAKFMRRKLEERNFDVKFFDPVEMKFPLITQPVHFYGPERKGAPAILVENEKFVKDADAYVIVSAEYNHNVPPALTNLLDAFPCSAYSYKPSGLVCYSMGQFGGMRAAMALRAITGELGCLSVSNIFGIPTVQNAFDEEGNPKNDHMESGAKKMLDQLEWMATAMKNHRE 194          
BLAST of FMN_red domain-containing protein vs. TrEMBL
Match: H9LIY4 (NAD(P)H:quinone oxidoreductase-like protein OS=Crassostrea ariakensis OX=94323 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.248e-31
Identity = 71/188 (37.77%), Postives = 108/188 (57.45%), Query Frame = 1
Query:   40 LKLLIFLSSVRDSRNAERVYKMALRLATEKGFSVDVMDXXXXXXXXXXXXXHFY-PDQSKAPQQLHVLNQKVMFADCYLMITGEYNYGVPPALLNLIDHFPPPSFAFKPAGILSYSAGQGGRHSSSHLEHTLTG-IGCLVQPFIVNISVVQDTVTAEGDAHGGHTEDNIKILLDQIEFVGLALKQQKQ 597
            LK+L+ L S+RD R   RV K   R   E+ F V   DP++   PL+  P+HFY P++  AP  L    + V  AD Y++++ EYN+ VPPAL NL+D FP  ++++KP+G++ YS G  G   ++     +TG +GCL    I  I  VQ+    EG+    H E   K +LDQ+E++  A+K  ++
Sbjct:    7 LKVLLVLGSIRDGRQGLRVAKFMKRKLEERNFDVKFFDPVEMKFPLITQPVHFYGPERKGAPAILAENEKFVKEADAYVIVSAEYNHNVPPALTNLLDAFPCSAYSYKPSGLVCYSMGPFGGMRAAMALRAITGELGCLSVSNIFGIPTVQNAFDEEGNPQNDHMESGAKKMLDQLEWMATAMKNHRE 194          
BLAST of FMN_red domain-containing protein vs. TrEMBL
Match: A0A1D1UJ34 (FMN_red domain-containing protein OS=Ramazzottius varieornatus OX=947166 GN=RvY_00441-1 PE=4 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.449e-30
Identity = 69/197 (35.03%), Postives = 120/197 (60.91%), Query Frame = 1
Query:   34 SGLKLLIFLSSVRDSRNAERVYKMALRLATEKGFSVDVMDXXXXXXXXXXXXXHFYPDQSKAPQQLHVLNQKVMFADCYLMITGEYNYGVPPALLNLIDHFPPPSFAFKPAGILSYSAGQ-GGRHSSSHLEHTLTGIGCLVQPFIVNISVVQDTVTAEGD--AHGGHTEDNIKILLDQIEFVGLALKQQKQSGKVKQ 615
            SGL +++FL SVR++R A RV K   +L  ++  +V+++DP   +L  +  PLHFY D ++AP  LH LN K+  AD ++++  EYN  + PAL +++D+FPP S+A++P+ I++YS GQ GG  ++  L   L+ +  +  P +  I  V + +T +G+  A G  T+ + + +  Q E+   ALK ++ S  + +
Sbjct:    5 SGLNIMVFLGSVRENRMATRVGKFIQKLLEKRSHTVEIVDPKALDLGEVIQPLHFYKDPAEAPAILHELNDKIKKADGFVVVAAEYNSAISPALCSIMDNFPPLSYAYRPSAIVTYSMGQFGGIRAAMQLRQFLSELTTVHMPSMTVIPKVHEAITEDGEVTAEGPLTKAS-EAMCKQFEWYARALKNERNSSGIPK 200          
BLAST of FMN_red domain-containing protein vs. Planmine SMEST
Match: SMESG000023871.1 (SMESG000023871.1)

HSP 1 Score: 385.956 bits (990), Expect = 1.399e-137
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 1
Query:   31 MSGLKLLIFLSSVRDSRNAERVYKMALRLATEKGFSVDVMDXXXXXXXXXXXXXHFYPDQSKAPQQLHVLNQKVMFADCYLMITGEYNYGVPPALLNLIDHFPPPSFAFKPAGILSYSAGQGGRHSSSHLEHTLTGIGCLVQPFIVNISVVQDTVTAEGDAHGGHTEDNIKILLDQIEFVGLALKQQKQSGKVKQPRLNNVF 636
            MSGLKLLIFLSSVRDSRNAERVYKMALRLATEKGFSVDVMDPLKENLPLLKNPLHFYPDQSKAPQQLHVLNQKVMFADCYLMITGEYNYGVPPALLNLIDHFPPPSFAFKPAGILSYSAGQGGRHSSSHLEHTLTGIGCLVQPFIVNISVVQDTVTAEGDAHGGHTEDNIKILLDQIEFVGLALKQQKQSGKVKQPRLNNVF
Sbjct:    1 MSGLKLLIFLSSVRDSRNAERVYKMALRLATEKGFSVDVMDPLKENLPLLKNPLHFYPDQSKAPQQLHVLNQKVMFADCYLMITGEYNYGVPPALLNLIDHFPPPSFAFKPAGILSYSAGQGGRHSSSHLEHTLTGIGCLVQPFIVNISVVQDTVTAEGDAHGGHTEDNIKILLDQIEFVGLALKQQKQSGKVKQPRLNNVF 202          
BLAST of FMN_red domain-containing protein vs. Planmine SMEST
Match: SMESG000023871.1 (SMESG000023871.1)

HSP 1 Score: 336.65 bits (862), Expect = 1.603e-118
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 1
Query:  103 MALRLATEKGFSVDVMDXXXXXXXXXXXXXHFYPDQSKAPQQLHVLNQKVMFADCYLMITGEYNYGVPPALLNLIDHFPPPSFAFKPAGILSYSAGQGGRHSSSHLEHTLTGIGCLVQPFIVNISVVQDTVTAEGDAHGGHTEDNIKILLDQIEFVGLALKQQKQSGKVKQPRLNNVF 636
            MALRLATEKGFSVDVMDPLKENLPLLKNPLHFYPDQSKAPQQLHVLNQKVMFADCYLMITGEYNYGVPPALLNLIDHFPPPSFAFKPAGILSYSAGQGGRHSSSHLEHTLTGIGCLVQPFIVNISVVQDTVTAEGDAHGGHTEDNIKILLDQIEFVGLALKQQKQSGKVKQPRLNNVF
Sbjct:    1 MALRLATEKGFSVDVMDPLKENLPLLKNPLHFYPDQSKAPQQLHVLNQKVMFADCYLMITGEYNYGVPPALLNLIDHFPPPSFAFKPAGILSYSAGQGGRHSSSHLEHTLTGIGCLVQPFIVNISVVQDTVTAEGDAHGGHTEDNIKILLDQIEFVGLALKQQKQSGKVKQPRLNNVF 178          
BLAST of FMN_red domain-containing protein vs. Planmine SMEST
Match: SMESG000060640.1 (SMESG000060640.1)

HSP 1 Score: 120.168 bits (300), Expect = 3.991e-33
Identity = 66/190 (34.74%), Postives = 109/190 (57.37%), Query Frame = 1
Query:   40 LKLLIFLSSVRDSRNAERVYKMALRLATEKGFSVDVMDXXXXXXXXXXXXXHFYPDQSKAPQQLHVLNQKVMFADCYLMITGEYNYGVPPALLNLIDHFPPPSFAFKPAGILSYSAGQGGRHSSSHLEHTLTGIGCLVQPFIVNISVVQDTVTAEGDAHGGHTEDNIKILL-DQIEFVGLALKQQKQSGK 606
            + + + LSSVR  RNA+R+  M   L       V+V+DPL   +PLL  P H+YPD+   P+ L+ LN+ +  +D  + +T EYN  VPP L+NLID  P  S+ +KPA I++YS G GG  +   L   L+ +GC++ P   +I+ + + +T+ G+      E    IL+  Q++++  A++  ++  K
Sbjct:   13 ISITLILSSVRPHRNADRICAMMKSLLQSFNCRVEVIDPLIIGIPLLDVPYHYYPDKKDIPEWLNNLNKSIQESDALIFLTTEYNRAVPPPLINLIDFIPFSSYEYKPASIITYSVGAGGGSALDQLRSILSYLGCIITPLCPSITRMDEKITSNGEIDPKCIEKRSLILMCQQLQYITHAIRSWRRKNK 202          
The following BLAST results are available for this feature:
BLAST of FMN_red domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of FMN_red domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of FMN_red domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of FMN_red domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of FMN_red domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of FMN_red domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of FMN_red domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of FMN_red domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A5J4N8B19.003e-3843.43FMN_red domain-containing protein OS=Paragonimus w... [more]
A0A1S3KEB96.570e-3339.57uncharacterized protein LOC106181199 OS=Lingula un... [more]
K1PHZ24.796e-3238.30Uncharacterized protein yieF OS=Crassostrea gigas ... [more]
H9LIY47.248e-3137.77NAD(P)H:quinone oxidoreductase-like protein OS=Cra... [more]
A0A1D1UJ342.449e-3035.03FMN_red domain-containing protein OS=Ramazzottius ... [more]
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BLAST of FMN_red domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of FMN_red domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of FMN_red domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of FMN_red domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of FMN_red domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of FMN_red domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3
Match NameE-valueIdentityDescription
SMESG000023871.11.399e-137100.00SMESG000023871.1[more]
SMESG000023871.11.603e-118100.00SMESG000023871.1[more]
SMESG000060640.13.991e-3334.74SMESG000060640.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30032272 ID=SMED30032272|Name=FMN_red domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=788bp
CAACTTTAAGTATATTCAAATACTTAGAAAATGTCAGGATTAAAACTATT
GATATTTTTATCGTCGGTTAGAGATTCGAGGAATGCAGAAAGAGTTTATA
AGATGGCATTAAGATTGGCAACCGAGAAAGGATTTAGTGTAGATGTAATG
GATCCGCTCAAAGAAAATTTGCCTTTATTAAAAAACCCGTTGCATTTCTA
TCCAGATCAAAGCAAAGCTCCTCAACAATTACATGTTCTAAATCAAAAGG
TTATGTTTGCCGATTGTTACTTGATGATAACTGGAGAATATAATTACGGT
GTTCCTCCAGCTCTTTTGAATCTCATAGATCATTTTCCGCCTCCGAGTTT
TGCTTTCAAACCAGCTGGAATTCTTAGCTATTCTGCTGGTCAAGGTGGGC
GTCACTCAAGCTCGCATTTAGAGCACACATTGACCGGTATTGGTTGCTTG
GTTCAGCCGTTTATTGTCAACATTTCGGTCGTGCAGGATACTGTCACTGC
TGAAGGGGATGCACATGGAGGGCACACGGAGGACAACATCAAAATACTCC
TTGACCAAATTGAATTTGTAGGATTAGCATTGAAACAACAAAAACAATCG
GGAAAAGTAAAGCAGCCACGACTTAATAACGTTTTCTGATTTTCCAGAAA
GACTTATTTGACTTATTTGTTCACAAACTCTTTATTATTATCACTAGTTC
TTGATTTCCAGTTTCTGATGTTCCTTATTAGCTTTAGCTATTTATAGGAA
TCCGATTATTTAATAAAAATAAATTATTTCAATTTAAA
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protein sequence of SMED30032272-orf-1

>SMED30032272-orf-1 ID=SMED30032272-orf-1|Name=SMED30032272-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=203bp
MSGLKLLIFLSSVRDSRNAERVYKMALRLATEKGFSVDVMDPLKENLPLL
KNPLHFYPDQSKAPQQLHVLNQKVMFADCYLMITGEYNYGVPPALLNLID
HFPPPSFAFKPAGILSYSAGQGGRHSSSHLEHTLTGIGCLVQPFIVNISV
VQDTVTAEGDAHGGHTEDNIKILLDQIEFVGLALKQQKQSGKVKQPRLNN
VF*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000034epidermis
PLANA:0000099neuron
PLANA:0000101muscle cell
PLANA:0000140anterior region of the whole animal
PLANA:0000418head
PLANA:0002032epidermal cell
Vocabulary: INTERPRO
TermDefinition
IPR029039Flavoprotein-like_sf
IPR005025FMN_Rdtase-like
Vocabulary: molecular function
TermDefinition
GO:0016491oxidoreductase activity
Vocabulary: biological process
TermDefinition
GO:0055114oxidation-reduction process
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029039Flavoprotein-like superfamilyGENE3DG3DSA:3.40.50.360coord: 2..195
e-value: 1.3E-29
score: 105.3
IPR029039Flavoprotein-like superfamilySUPERFAMILYSSF52218Flavoproteinscoord: 1..170
IPR005025NADPH-dependent FMN reductase-likePFAMPF03358FMN_redcoord: 5..143
e-value: 9.6E-21
score: 74.1
NoneNo IPR availablePANTHERPTHR30543CHROMATE REDUCTASEcoord: 3..189
NoneNo IPR availablePANTHERPTHR30543:SF1NAD(P)H-DEPENDENT FMN REDUCTASE LOT6coord: 3..189