SMED30032188
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30032188 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 2
Alignments
SMED30032188 aligns in the following genomic locations:
Homology
BLAST of SMED30032188 vs. Ensembl Human
Match: PABPN1 (poly(A) binding protein nuclear 1 [Source:HGNC Symbol;Acc:HGNC:8565]) HSP 1 Score: 112.464 bits (280), Expect = 1.197e-30 Identity = 51/105 (48.57%), Postives = 73/105 (69.52%), Query Frame = -2 Query: 149 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTQGR 463 +S EE+ E D+RSI+V NVDY A+ EEL HF GCG +N++TI K++ PKG+AYIEF + ++V+ S LD+S F+ R+IK+ KRTN GI+ +R + R Sbjct: 33 MSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRAR 137
BLAST of SMED30032188 vs. Ensembl Human
Match: PABPN1 (poly(A) binding protein nuclear 1 [Source:HGNC Symbol;Acc:HGNC:8565]) HSP 1 Score: 112.464 bits (280), Expect = 1.410e-30 Identity = 51/105 (48.57%), Postives = 73/105 (69.52%), Query Frame = -2 Query: 149 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTQGR 463 +S EE+ E D+RSI+V NVDY A+ EEL HF GCG +N++TI K++ PKG+AYIEF + ++V+ S LD+S F+ R+IK+ KRTN GI+ +R + R Sbjct: 33 MSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRAR 137
BLAST of SMED30032188 vs. Ensembl Human
Match: BCL2L2-PABPN1 (BCL2L2-PABPN1 readthrough [Source:HGNC Symbol;Acc:HGNC:42959]) HSP 1 Score: 114.39 bits (285), Expect = 9.336e-30 Identity = 51/105 (48.57%), Postives = 73/105 (69.52%), Query Frame = -2 Query: 149 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTQGR 463 +S EE+ E D+RSI+V NVDY A+ EEL HF GCG +N++TI K++ PKG+AYIEF + ++V+ S LD+S F+ R+IK+ KRTN GI+ +R + R Sbjct: 188 MSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRAR 292
BLAST of SMED30032188 vs. Ensembl Human
Match: BCL2L2-PABPN1 (BCL2L2-PABPN1 readthrough [Source:HGNC Symbol;Acc:HGNC:42959]) HSP 1 Score: 114.39 bits (285), Expect = 9.336e-30 Identity = 51/105 (48.57%), Postives = 73/105 (69.52%), Query Frame = -2 Query: 149 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTQGR 463 +S EE+ E D+RSI+V NVDY A+ EEL HF GCG +N++TI K++ PKG+AYIEF + ++V+ S LD+S F+ R+IK+ KRTN GI+ +R + R Sbjct: 188 MSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRAR 292
BLAST of SMED30032188 vs. Ensembl Human
Match: PABPN1 (poly(A) binding protein nuclear 1 [Source:HGNC Symbol;Acc:HGNC:8565]) HSP 1 Score: 112.464 bits (280), Expect = 2.252e-29 Identity = 51/105 (48.57%), Postives = 73/105 (69.52%), Query Frame = -2 Query: 149 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTQGR 463 +S EE+ E D+RSI+V NVDY A+ EEL HF GCG +N++TI K++ PKG+AYIEF + ++V+ S LD+S F+ R+IK+ KRTN GI+ +R + R Sbjct: 161 MSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRAR 265
BLAST of SMED30032188 vs. Ensembl Celegans
Match: sgnh-1 (SGN1 Homolog [Source:UniProtKB/TrEMBL;Acc:O44530]) HSP 1 Score: 94.7449 bits (234), Expect = 3.001e-24 Identity = 46/136 (33.82%), Postives = 79/136 (58.09%), Query Frame = -2 Query: 62 APLSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTQGRELGVAKMSLKPAHPGSRYNGNPNASNSIN 469 AP + EE+ + D+RS++V NVD+ ++V E+ +HF CG + ++TIP K+ K +A++EF +++V+++ +L + F+NRKI +TLKRTN G +G + KPAH +G P + + Sbjct: 34 APTA-EEQEKTDARSVYVGNVDWKSTVSEIEEHFAVCGKVARVTIPKDKFTGYQKNFAFVEFQKLESVQLALVLSGTMFRNRKIMVTLKRTNKPG-------------MGRTATAQKPAHFAKSSHGKPGSHQGVT 155
BLAST of SMED30032188 vs. Ensembl Celegans
Match: pabp-2 (PolyA Binding Protein (Nuclear) [Source:UniProtKB/TrEMBL;Acc:Q93233]) HSP 1 Score: 94.7449 bits (234), Expect = 6.816e-24 Identity = 39/96 (40.62%), Postives = 66/96 (68.75%), Query Frame = -2 Query: 167 EERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNR 454 EE+ E D++S++V NVDY A+ EE+ +HF GCG ++++TI +++ PKG+AY+EF + ++ + + DS + R+IK+ KRTN G++ NR Sbjct: 70 EEKAEADAKSVYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVEFTEKEGMQNALAMTDSLLRGRQIKVDPKRTNKPGMSTTNR 165
BLAST of SMED30032188 vs. Ensembl Celegans
Match: EEED8.4 (Putative RNA-binding protein EEED8.4 [Source:UniProtKB/Swiss-Prot;Acc:Q09295]) HSP 1 Score: 90.1225 bits (222), Expect = 3.278e-22 Identity = 39/96 (40.62%), Postives = 68/96 (70.83%), Query Frame = -2 Query: 182 APLSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGI 469 P + EE+ D++S+ + NVD+++++EE+ +HF+GCG I K TIP K+ + K +AYIEFD+ +++ + +++ S F++R I +T KRTNI G+ Sbjct: 42 VPPTEEEQKAIDAKSVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRTNIPGM 137
BLAST of SMED30032188 vs. Ensembl Celegans
Match: EEED8.12 (Putative RNA-binding protein EEED8.12 [Source:UniProtKB/Swiss-Prot;Acc:Q09301]) HSP 1 Score: 88.1965 bits (217), Expect = 1.878e-21 Identity = 38/96 (39.58%), Postives = 68/96 (70.83%), Query Frame = -2 Query: 182 APLSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGI 469 P + EE+ D++S+ + NVD+++++EE+ +HF+GCG I + TIP K+ + K +AYIEFD+ +++ + +++ S F++R I +T KRTNI G+ Sbjct: 48 VPPTEEEQKAIDAKSVFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRTNIPGM 143
BLAST of SMED30032188 vs. Ensembl Celegans
Match: rbm-3.1 (RNA Binding Motif protein homolog [Source:UniProtKB/TrEMBL;Acc:O45712]) HSP 1 Score: 53.9138 bits (128), Expect = 1.067e-9 Identity = 24/75 (32.00%), Postives = 42/75 (56.00%), Query Frame = -2 Query: 206 SIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEF-DNIDAVKVSKMLDDSEFKNRKIKITL 427 S++V N + + EELG F G IN + I + RP+G+A+IEF + A + + ++ +EF R +++ L Sbjct: 6 SVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQMNGAEFNGRPLRVNL 80
BLAST of SMED30032188 vs. Ensembl Fly
Match: Pabp2 (gene:FBgn0005648 transcript:FBtr0088785) HSP 1 Score: 110.923 bits (276), Expect = 8.472e-30 Identity = 57/136 (41.91%), Postives = 83/136 (61.03%), Query Frame = -2 Query: 80 PLSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILT---QGRELGVAKMSLKPAHPGSR----YNGNPN 466 PLS EE+ E D+RS++V NVDY AS EEL HF GCG IN++TI +K + PKG+AYIEF + + V+ + ++++ F+ R+IK+ KRTN G++ NR +GR V++ G+R Y G N Sbjct: 84 PLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGARVSRACCHSTFRGARRAMGYRGRAN 219
BLAST of SMED30032188 vs. Ensembl Fly
Match: Pabp2 (gene:FBgn0005648 transcript:FBtr0088786) HSP 1 Score: 110.923 bits (276), Expect = 8.472e-30 Identity = 57/136 (41.91%), Postives = 83/136 (61.03%), Query Frame = -2 Query: 80 PLSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILT---QGRELGVAKMSLKPAHPGSR----YNGNPN 466 PLS EE+ E D+RS++V NVDY AS EEL HF GCG IN++TI +K + PKG+AYIEF + + V+ + ++++ F+ R+IK+ KRTN G++ NR +GR V++ G+R Y G N Sbjct: 84 PLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGARVSRACCHSTFRGARRAMGYRGRAN 219
BLAST of SMED30032188 vs. Ensembl Fly
Match: SC35 (gene:FBgn0265298 transcript:FBtr0306252) HSP 1 Score: 49.2914 bits (116), Expect = 4.718e-7 Identity = 22/77 (28.57%), Postives = 40/77 (51.95%), Query Frame = -2 Query: 200 SIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEF-DNIDAVKVSKMLDDSEFKNRKIKITLKR 427 S+ V N+ Y + E+L + F CG + I IP +Y +G+A++ F D DA + +D R++++ + R Sbjct: 24 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAEDALEAMDGRMLDGRELRVQMAR 100
BLAST of SMED30032188 vs. Ensembl Fly
Match: SC35 (gene:FBgn0265298 transcript:FBtr0302910) HSP 1 Score: 49.2914 bits (116), Expect = 4.718e-7 Identity = 22/77 (28.57%), Postives = 40/77 (51.95%), Query Frame = -2 Query: 200 SIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEF-DNIDAVKVSKMLDDSEFKNRKIKITLKR 427 S+ V N+ Y + E+L + F CG + I IP +Y +G+A++ F D DA + +D R++++ + R Sbjct: 24 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAEDALEAMDGRMLDGRELRVQMAR 100
BLAST of SMED30032188 vs. Ensembl Fly
Match: SC35 (gene:FBgn0265298 transcript:FBtr0089899) HSP 1 Score: 49.2914 bits (116), Expect = 4.718e-7 Identity = 22/77 (28.57%), Postives = 40/77 (51.95%), Query Frame = -2 Query: 200 SIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEF-DNIDAVKVSKMLDDSEFKNRKIKITLKR 427 S+ V N+ Y + E+L + F CG + I IP +Y +G+A++ F D DA + +D R++++ + R Sbjct: 24 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAEDALEAMDGRMLDGRELRVQMAR 100
BLAST of SMED30032188 vs. Ensembl Zebrafish
Match: pabpn1 (poly(A) binding protein, nuclear 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2401]) HSP 1 Score: 112.464 bits (280), Expect = 2.724e-30 Identity = 50/105 (47.62%), Postives = 71/105 (67.62%), Query Frame = -2 Query: 149 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTQGR 463 +S EE+ E D RSI+V NVDY A+ EEL HF GCG +N++TI K+ PKG+AYIEF + ++V+ + LD+S F+ R+IK+ KRTN GI+ +R + R Sbjct: 87 MSIEEKIEADGRSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFADKESVRTAMALDESLFRGRQIKVGAKRTNRPGISTTDRGFPRAR 191
BLAST of SMED30032188 vs. Ensembl Zebrafish
Match: pabpn1 (poly(A) binding protein, nuclear 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2401]) HSP 1 Score: 112.849 bits (281), Expect = 2.757e-30 Identity = 50/105 (47.62%), Postives = 71/105 (67.62%), Query Frame = -2 Query: 149 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTQGR 463 +S EE+ E D RSI+V NVDY A+ EEL HF GCG +N++TI K+ PKG+AYIEF + ++V+ + LD+S F+ R+IK+ KRTN GI+ +R + R Sbjct: 87 MSIEEKIEADGRSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFADKESVRTAMALDESLFRGRQIKVGAKRTNRPGISTTDRGFPRAR 191
BLAST of SMED30032188 vs. Ensembl Zebrafish
Match: pabpn1 (poly(A) binding protein, nuclear 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2401]) HSP 1 Score: 112.079 bits (279), Expect = 3.100e-30 Identity = 50/105 (47.62%), Postives = 71/105 (67.62%), Query Frame = -2 Query: 149 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTQGR 463 +S EE+ E D RSI+V NVDY A+ EEL HF GCG +N++TI K+ PKG+AYIEF + ++V+ + LD+S F+ R+IK+ KRTN GI+ +R + R Sbjct: 31 MSIEEKIEADGRSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFADKESVRTAMALDESLFRGRQIKVGAKRTNRPGISTTDRGFPRAR 135
BLAST of SMED30032188 vs. Ensembl Zebrafish
Match: pabpn1 (poly(A) binding protein, nuclear 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2401]) HSP 1 Score: 112.464 bits (280), Expect = 9.639e-30 Identity = 50/105 (47.62%), Postives = 71/105 (67.62%), Query Frame = -2 Query: 149 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTQGR 463 +S EE+ E D RSI+V NVDY A+ EEL HF GCG +N++TI K+ PKG+AYIEF + ++V+ + LD+S F+ R+IK+ KRTN GI+ +R + R Sbjct: 87 MSIEEKIEADGRSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFADKESVRTAMALDESLFRGRQIKVGAKRTNRPGISTTDRGFPRAR 191
BLAST of SMED30032188 vs. Ensembl Zebrafish
Match: pabpn1l (PABPN1 like, cytoplasmic [Source:ZFIN;Acc:ZDB-GENE-080709-5]) HSP 1 Score: 104.76 bits (260), Expect = 5.086e-28 Identity = 51/125 (40.80%), Postives = 79/125 (63.20%), Query Frame = -2 Query: 95 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTQG--RELGVAKMSLKPAHPGSRY 463 +++EER + D RSI+V NVDY A+ +EL +F CG +N++TIP +++ PKG+AYIEF + ++V+ + LD++ F+ R IK++ KRTNI G + + L G R GV P G R+ Sbjct: 26 MTHEERIDSDRRSIYVGNVDYGATADELEMYFNSCGHVNRVTIPYNRFTGHPKGFAYIEFSDRESVRTAMALDETLFRGRVIKVSPKRTNIPGFSTTDVYLRGGWSRGRGVRASRFNPFR-GCRF 149
BLAST of SMED30032188 vs. Ensembl Xenopus
Match: ccdc113 (coiled-coil domain containing 113 [Source:Xenbase;Acc:XB-GENE-941142]) HSP 1 Score: 114.005 bits (284), Expect = 5.779e-30 Identity = 51/99 (51.52%), Postives = 70/99 (70.71%), Query Frame = -2 Query: 167 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNR 463 +S EE+ E D+RSI+V NVDY A+ EEL HF GCG +N++TI KY PKG+AYIEF + ++V+ S LD+S F+ R+IK+ KRTN GI+ +R Sbjct: 152 MSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVVPKRTNRPGISTTDR 250
BLAST of SMED30032188 vs. Ensembl Xenopus
Match: pabpn1l (poly(A) binding protein, nuclear 1-like (cytoplasmic) [Source:NCBI gene;Acc:549106]) HSP 1 Score: 102.449 bits (254), Expect = 2.686e-26 Identity = 47/99 (47.47%), Postives = 67/99 (67.68%), Query Frame = -2 Query: 170 PLSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNN 466 PLS EE+ E D RS++V NVDY + ++L HF CG IN+ITI K++ PKGYAYIEF ++V V+ +D++ F+ R IK+ KRTN+ GI+ + Sbjct: 81 PLSAEEKKEIDKRSVYVGNVDYGGTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDVAVAMDETVFRGRTIKVLPKRTNMPGISTTD 179
BLAST of SMED30032188 vs. Ensembl Xenopus
Match: ccdc113 (coiled-coil domain containing 113 [Source:Xenbase;Acc:XB-GENE-941142]) HSP 1 Score: 71.2478 bits (173), Expect = 2.872e-14 Identity = 41/100 (41.00%), Postives = 56/100 (56.00%), Query Frame = -2 Query: 167 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKG-YAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNR 463 +S EE+ E D+RSI+V NVDY A+ EEL HF GCG +N++TI KY PKG + + NI S +K ++ KRTN GI+ +R Sbjct: 152 MSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKGPFTFHRCCNICM---------SFYK----QVVPKRTNRPGISTTDR 238
BLAST of SMED30032188 vs. Ensembl Xenopus
Match: rbm34 (RNA binding motif protein 34 [Source:NCBI gene;Acc:448232]) HSP 1 Score: 48.9062 bits (115), Expect = 2.341e-6 Identity = 23/73 (31.51%), Postives = 40/73 (54.79%), Query Frame = -2 Query: 212 RSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKI 430 RS + N+ Y E + HF CG + + I + KG+ Y+ F++ DAV+++ L++SE RKI++ Sbjct: 271 RSAFIGNLPYEIEEEAVRDHFSECGKVQGVRIIRDQKTGIGKGFGYVLFESADAVQLALKLNNSELSGRKIRV 343
BLAST of SMED30032188 vs. Ensembl Mouse
Match: Pabpn1 (poly(A) binding protein, nuclear 1 [Source:MGI Symbol;Acc:MGI:1859158]) HSP 1 Score: 112.079 bits (279), Expect = 8.023e-31 Identity = 50/99 (50.51%), Postives = 71/99 (71.72%), Query Frame = -2 Query: 167 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNR 463 +S EE+ E D+RSI+V NVDY A+ EEL HF GCG +N++TI K++ PKG+AYIEF + ++V+ S LD+S F+ R+IK+ KRTN GI+ +R Sbjct: 61 MSLEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDR 159
BLAST of SMED30032188 vs. Ensembl Mouse
Match: Pabpn1 (poly(A) binding protein, nuclear 1 [Source:MGI Symbol;Acc:MGI:1859158]) HSP 1 Score: 112.079 bits (279), Expect = 1.075e-30 Identity = 51/105 (48.57%), Postives = 73/105 (69.52%), Query Frame = -2 Query: 149 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTQGR 463 +S EE+ E D+RSI+V NVDY A+ EEL HF GCG +N++TI K++ PKG+AYIEF + ++V+ S LD+S F+ R+IK+ KRTN GI+ +R + R Sbjct: 33 MSLEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRSR 137
BLAST of SMED30032188 vs. Ensembl Mouse
Match: Pabpn1 (poly(A) binding protein, nuclear 1 [Source:MGI Symbol;Acc:MGI:1859158]) HSP 1 Score: 112.079 bits (279), Expect = 1.075e-30 Identity = 51/105 (48.57%), Postives = 73/105 (69.52%), Query Frame = -2 Query: 149 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTQGR 463 +S EE+ E D+RSI+V NVDY A+ EEL HF GCG +N++TI K++ PKG+AYIEF + ++V+ S LD+S F+ R+IK+ KRTN GI+ +R + R Sbjct: 33 MSLEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRSR 137
BLAST of SMED30032188 vs. Ensembl Mouse
Match: Pabpn1 (poly(A) binding protein, nuclear 1 [Source:MGI Symbol;Acc:MGI:1859158]) HSP 1 Score: 112.079 bits (279), Expect = 1.137e-30 Identity = 51/105 (48.57%), Postives = 73/105 (69.52%), Query Frame = -2 Query: 149 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTQGR 463 +S EE+ E D+RSI+V NVDY A+ EEL HF GCG +N++TI K++ PKG+AYIEF + ++V+ S LD+S F+ R+IK+ KRTN GI+ +R + R Sbjct: 33 MSLEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRSR 137
BLAST of SMED30032188 vs. Ensembl Mouse
Match: Gm20521 (predicted gene 20521 [Source:MGI Symbol;Acc:MGI:5141986]) HSP 1 Score: 113.62 bits (283), Expect = 9.431e-30 Identity = 51/105 (48.57%), Postives = 73/105 (69.52%), Query Frame = -2 Query: 149 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTQGR 463 +S EE+ E D+RSI+V NVDY A+ EEL HF GCG +N++TI K++ PKG+AYIEF + ++V+ S LD+S F+ R+IK+ KRTN GI+ +R + R Sbjct: 188 MSLEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRSR 292
BLAST of SMED30032188 vs. UniProt/SwissProt
Match: sp|Q6NVP7|PABP2_XENTR (Polyadenylate-binding protein 2 OS=Xenopus tropicalis OX=8364 GN=pabpn1 PE=2 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 3.061e-29 Identity = 51/99 (51.52%), Postives = 70/99 (70.71%), Query Frame = -2 Query: 167 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNR 463 +S EE+ E D+RSI+V NVDY A+ EEL HF GCG +N++TI KY PKG+AYIEF + ++V+ S LD+S F+ R+IK+ KRTN GI+ +R Sbjct: 152 MSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVVPKRTNRPGISTTDR 250
BLAST of SMED30032188 vs. UniProt/SwissProt
Match: sp|Q7KNF2|PABP2_DROME (Polyadenylate-binding protein 2 OS=Drosophila melanogaster OX=7227 GN=Pabp2 PE=1 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 8.493e-29 Identity = 57/136 (41.91%), Postives = 83/136 (61.03%), Query Frame = -2 Query: 80 PLSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILT---QGRELGVAKMSLKPAHPGSR----YNGNPN 466 PLS EE+ E D+RS++V NVDY AS EEL HF GCG IN++TI +K + PKG+AYIEF + + V+ + ++++ F+ R+IK+ KRTN G++ NR +GR V++ G+R Y G N Sbjct: 84 PLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGARVSRACCHSTFRGARRAMGYRGRAN 219
BLAST of SMED30032188 vs. UniProt/SwissProt
Match: sp|Q8CCS6|PABP2_MOUSE (Polyadenylate-binding protein 2 OS=Mus musculus OX=10090 GN=Pabpn1 PE=1 SV=3) HSP 1 Score: 112.849 bits (281), Expect = 8.768e-29 Identity = 51/105 (48.57%), Postives = 73/105 (69.52%), Query Frame = -2 Query: 149 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTQGR 463 +S EE+ E D+RSI+V NVDY A+ EEL HF GCG +N++TI K++ PKG+AYIEF + ++V+ S LD+S F+ R+IK+ KRTN GI+ +R + R Sbjct: 157 MSLEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRSR 261
BLAST of SMED30032188 vs. UniProt/SwissProt
Match: sp|Q7ZXB8|PAB2B_XENLA (Polyadenylate-binding protein 2-B OS=Xenopus laevis OX=8355 GN=pabpn1-b PE=2 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 1.017e-28 Identity = 50/99 (50.51%), Postives = 70/99 (70.71%), Query Frame = -2 Query: 167 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNR 463 +S EE+ E D+RSI+V NVDY A+ EEL HF GCG +N++TI K+ PKG+AYIEF + ++V+ S LD+S F+ R+IK+ KRTN GI+ +R Sbjct: 151 MSVEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVVPKRTNRPGISTTDR 249
BLAST of SMED30032188 vs. UniProt/SwissProt
Match: sp|Q86U42|PABP2_HUMAN (Polyadenylate-binding protein 2 OS=Homo sapiens OX=9606 GN=PABPN1 PE=1 SV=3) HSP 1 Score: 112.464 bits (280), Expect = 1.155e-28 Identity = 51/105 (48.57%), Postives = 73/105 (69.52%), Query Frame = -2 Query: 149 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTQGR 463 +S EE+ E D+RSI+V NVDY A+ EEL HF GCG +N++TI K++ PKG+AYIEF + ++V+ S LD+S F+ R+IK+ KRTN GI+ +R + R Sbjct: 161 MSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRAR 265
BLAST of SMED30032188 vs. TrEMBL
Match: G3W0E6 (RRM domain-containing protein OS=Sarcophilus harrisii OX=9305 PE=4 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 1.621e-32 Identity = 58/107 (54.21%), Postives = 77/107 (71.96%), Query Frame = -2 Query: 149 APLSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTQGR 469 A +S +++ E DSRSIHV NVDY A+V+EL +HF GCG +N++TI K+ PKG+AYIEF N D+VK S LDDS F+ R+IK+T KRTN+ GI+ NR + R Sbjct: 89 ARVSIQQKMEADSRSIHVGNVDYGATVQELEEHFHGCGPVNRVTILCDKFTGHPKGFAYIEFSNKDSVKASMALDDSLFRGRQIKVTPKRTNLPGISTTNRGFPRAR 195
BLAST of SMED30032188 vs. TrEMBL
Match: A0A0N4UZD5 (RRM domain-containing protein OS=Enterobius vermicularis OX=51028 GN=EVEC_LOCUS2689 PE=4 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 1.893e-30 Identity = 58/125 (46.40%), Postives = 86/125 (68.80%), Query Frame = -2 Query: 89 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTQGRELGVAKMSLKPAHPGSRYNG 463 LS EE+ E DSRS++V NVDY ++ +EL HF GCG +N++TI T K++ PKG+AYIEF + +AV+ + LD+S F+ R+IK++ KRTN G++ NR +GR G A++ +K + G Y G Sbjct: 80 LSMEEKMEADSRSVYVGNVDYCSTAQELAAHFHGCGCVNRVTILTDKFSGHPKGFAYIEFADKEAVQTALQLDESLFRGRQIKVSAKRTNKPGVSTTNR-PPRGRGRGAARVIVKYIYGGG-YRG 202
BLAST of SMED30032188 vs. TrEMBL
Match: A0A087UDW2 (Polyadenylate-binding protein 2 (Fragment) OS=Stegodyphus mimosarum OX=407821 GN=X975_18530 PE=4 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 2.247e-30 Identity = 56/99 (56.57%), Postives = 72/99 (72.73%), Query Frame = -2 Query: 167 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNR 463 L+YEE+ E DSRSI+V NVDY A+ EEL +HF GCG IN++TI KY+ PKG+AYIEF + D+V S LD+S F+ R+IK+ KRTN GI+ NR Sbjct: 78 LTYEEKMEIDSRSIYVGNVDYGATAEELEQHFHGCGSINRVTIQCDKYSGHPKGFAYIEFADKDSVSTSTALDESLFRGRQIKVMPKRTNRPGISTTNR 176
BLAST of SMED30032188 vs. TrEMBL
Match: A0A5E4NE09 (RRM domain-containing protein OS=Cinara cedri OX=506608 GN=CINCED_3A009648 PE=4 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 3.341e-30 Identity = 63/151 (41.72%), Postives = 89/151 (58.94%), Query Frame = -2 Query: 29 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNR-ILTQGRELGVAKMSLKPAHPGSRYNGNPNASNSINRGFSSGYR-----RGG 463 LS +E+ E D+RS++V NVDY+A+ EEL HF GCG IN++TI +K++ PKG+AYIEF +ID+V + +DDS F+ R+IK+ KRTN GI+ NR + ++GR + Y G P F G+R RGG Sbjct: 101 LSEQEKAEADARSVYVGNVDYAATAEELETHFHGCGSINRVTILCNKFDGHPKGFAYIEFADIDSVHTAMAMDDSLFRGRQIKVNPKRTNKPGISTTNRPVASRGRAM---------------YRGRPTTRGGTQSSFYGGFRPTRRPRGG 236
BLAST of SMED30032188 vs. TrEMBL
Match: A0A5E4NHF7 (RNA recognition motif domain OS=Cinara cedri OX=506608 GN=CINCED_3A009648 PE=4 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 3.600e-30 Identity = 60/143 (41.96%), Postives = 86/143 (60.14%), Query Frame = -2 Query: 38 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNR-ILTQGRELGVAKMSLKPAHPGSRYNGNPNASNSINRGFSSGYR 463 LS +E+ E D+RS++V NVDY+A+ EEL HF GCG IN++TI +K++ PKG+AYIEF +ID+V + +DDS F+ R+IK+ KRTN GI+ NR + ++GR + Y G P F G+R Sbjct: 101 LSEQEKAEADARSVYVGNVDYAATAEELETHFHGCGSINRVTILCNKFDGHPKGFAYIEFADIDSVHTAMAMDDSLFRGRQIKVNPKRTNKPGISTTNRPVASRGRAM---------------YRGRPTTRGGTQSSFYGGFR 228
BLAST of SMED30032188 vs. Ensembl Cavefish
Match: pabpn1 (poly(A) binding protein, nuclear 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2401]) HSP 1 Score: 112.464 bits (280), Expect = 8.326e-31 Identity = 50/105 (47.62%), Postives = 71/105 (67.62%), Query Frame = -2 Query: 149 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTQGR 463 +S EE+ E D RSI+V NVDY A+ EEL HF GCG +N++TI K+ PKG+AYIEF + ++V+ + LD+S F+ R+IK+ KRTN GI+ +R + R Sbjct: 31 MSIEEKMEADGRSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFADKESVRTAMALDESLFRGRQIKVGAKRTNRPGISTTDRGFPRAR 135
BLAST of SMED30032188 vs. Ensembl Cavefish
Match: pabpn1 (poly(A) binding protein, nuclear 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2401]) HSP 1 Score: 113.235 bits (282), Expect = 1.795e-30 Identity = 50/105 (47.62%), Postives = 71/105 (67.62%), Query Frame = -2 Query: 149 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTQGR 463 +S EE+ E D RSI+V NVDY A+ EEL HF GCG +N++TI K+ PKG+AYIEF + ++V+ + LD+S F+ R+IK+ KRTN GI+ +R + R Sbjct: 87 MSIEEKMEADGRSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFADKESVRTAMALDESLFRGRQIKVGAKRTNRPGISTTDRGFPRAR 191
BLAST of SMED30032188 vs. Ensembl Cavefish
Match: pabpn1 (poly(A) binding protein, nuclear 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2401]) HSP 1 Score: 112.849 bits (281), Expect = 4.529e-30 Identity = 50/105 (47.62%), Postives = 71/105 (67.62%), Query Frame = -2 Query: 149 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTQGR 463 +S EE+ E D RSI+V NVDY A+ EEL HF GCG +N++TI K+ PKG+AYIEF + ++V+ + LD+S F+ R+IK+ KRTN GI+ +R + R Sbjct: 87 MSIEEKMEADGRSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFADKESVRTAMALDESLFRGRQIKVGAKRTNRPGISTTDRGFPRAR 191
BLAST of SMED30032188 vs. Ensembl Cavefish
Match: pabpn1 (poly(A) binding protein, nuclear 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2401]) HSP 1 Score: 106.686 bits (265), Expect = 1.432e-27 Identity = 49/105 (46.67%), Postives = 70/105 (66.67%), Query Frame = -2 Query: 149 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTQGR 463 +S EE+ E D RSI+V NVDY A+ EEL HF GCG +N++TI K+ PK +AYIEF + ++V+ + LD+S F+ R+IK+ KRTN GI+ +R + R Sbjct: 86 MSIEEKMEADGRSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPK-FAYIEFADKESVRTAMALDESLFRGRQIKVGAKRTNRPGISTTDRGFPRAR 189
BLAST of SMED30032188 vs. Ensembl Cavefish
Match: PABPN1L (PABPN1 like, cytoplasmic [Source:HGNC Symbol;Acc:HGNC:37237]) HSP 1 Score: 101.293 bits (251), Expect = 8.289e-26 Identity = 43/98 (43.88%), Postives = 69/98 (70.41%), Query Frame = -2 Query: 170 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNN 463 +++EER + D+RS++V NVDY + +EL HF GCG +N++TI K+ PKG+AYIEF + ++V+ + LD++ F+ R IK+ KRTN+ GI+ + Sbjct: 60 MTHEERIDADNRSVYVGNVDYGTTADELEIHFNGCGHVNRVTILCDKFTGHPKGFAYIEFSDRESVRTAMALDETLFRGRVIKVLPKRTNMPGISTTD 157
BLAST of SMED30032188 vs. Ensembl Sea Lamprey
Match: pabpn1 (poly(A) binding protein, nuclear 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2401]) HSP 1 Score: 111.309 bits (277), Expect = 2.155e-30 Identity = 48/98 (48.98%), Postives = 69/98 (70.41%), Query Frame = -2 Query: 170 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNN 463 +S+EE+ E D+RSI+V NVDY A+ EEL HF GCG +N++TI K+ PKG+AYIEF ++++ + LDDS F+ R+IK+ KRTN GI+ + Sbjct: 87 MSFEEKMEADARSIYVGNVDYHATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFSEKESIRTAMALDDSLFRGRQIKVLPKRTNRPGISSTD 184
BLAST of SMED30032188 vs. Ensembl Sea Lamprey
Match: rbm34 (RNA binding motif protein 34 [Source:ZFIN;Acc:ZDB-GENE-040718-77]) HSP 1 Score: 49.6766 bits (117), Expect = 1.448e-7 Identity = 22/73 (30.14%), Postives = 38/73 (52.05%), Query Frame = -2 Query: 212 RSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKI 430 RS+ + N+ Y + + HF CG + + + + + KG+ YI F DAV ++ LD SE RK+++ Sbjct: 213 RSVFIGNLPYDVEEDRIRSHFEPCGPVESVRVVRDRESGMGKGFGYILFKGTDAVLLALHLDGSEMAGRKVRV 285
BLAST of SMED30032188 vs. Ensembl Yeast
Match: SGN1 (Cytoplasmic RNA-binding protein; contains an RNA recognition motif (RRM); may have a role in mRNA translation, as suggested by genetic interactions with genes encoding proteins involved in translational initiation [Source:SGD;Acc:S000001440]) HSP 1 Score: 72.0182 bits (175), Expect = 9.215e-16 Identity = 39/100 (39.00%), Postives = 57/100 (57.00%), Query Frame = -2 Query: 176 LSYEER----FEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITK 463 LS EE+ E DSRSI V N+ + E++ HF+ CG I +IT+ + PKGY YIEF++ + + L+ E K +KI ++ KRTNI G + Sbjct: 49 LSKEEKHAHQLEADSRSIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYREKALQLNGGELKGKKIAVSRKRTNIPGFNR 148
BLAST of SMED30032188 vs. Ensembl Yeast
Match: NOP12 (Nucleolar protein involved in pre-25S rRNA processing; also involved in biogenesis of large 60S ribosomal subunit; contains an RNA recognition motif (RRM); binds to Ebp2; similar to Nop13p and Nsr1p [Source:SGD;Acc:S000005401]) HSP 1 Score: 51.2174 bits (121), Expect = 3.092e-8 Identity = 25/70 (35.71%), Postives = 40/70 (57.14%), Query Frame = -2 Query: 221 RSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRK 430 RSI V N+D+ E L KHF CG I + I N KG+AY++F ++ +V + +L++ K++K Sbjct: 279 RSIFVGNLDFEEIEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDLQSVNKALLLNEKPMKSQK 348
BLAST of SMED30032188 vs. Ensembl Nematostella
Match: EDO46407 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RPZ7]) HSP 1 Score: 113.235 bits (282), Expect = 1.131e-31 Identity = 49/100 (49.00%), Postives = 73/100 (73.00%), Query Frame = -2 Query: 170 APLSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNN 469 P ++EE+ E D+RS++V NVDYSA+ EEL +HF GCG +N++TI K++ PKG+AY+EF + D+V + +L DS FK R+IK+ LKRTN G++ + Sbjct: 27 GPKTFEEKAEVDARSVYVGNVDYSATAEELEQHFHGCGSVNRVTILCDKFSGHPKGFAYVEFSDKDSVDNAVLLSDSLFKGRQIKVVLKRTNRPGVSSTD 126
BLAST of SMED30032188 vs. Ensembl Medaka
Match: pabpn1 (poly(A) binding protein nuclear 1 [Source:NCBI gene;Acc:101157012]) HSP 1 Score: 114.39 bits (285), Expect = 6.115e-31 Identity = 51/105 (48.57%), Postives = 71/105 (67.62%), Query Frame = -2 Query: 149 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTQGR 463 +S EE+ E D RSI+V NVDY A+ EEL HF GCG +N++TI KY PKG+AYIEF + ++V+ + LD+S F+ R+IK+ KRTN GI+ +R + R Sbjct: 87 MSIEEKMEADGRSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKGFAYIEFADKESVRTAMALDESLFRGRQIKVGAKRTNRPGISTTDRGFPRAR 191
BLAST of SMED30032188 vs. Ensembl Medaka
Match: pabpn1 (poly(A) binding protein nuclear 1 [Source:NCBI gene;Acc:101157012]) HSP 1 Score: 114.775 bits (286), Expect = 1.209e-30 Identity = 51/105 (48.57%), Postives = 71/105 (67.62%), Query Frame = -2 Query: 149 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTQGR 463 +S EE+ E D RSI+V NVDY A+ EEL HF GCG +N++TI KY PKG+AYIEF + ++V+ + LD+S F+ R+IK+ KRTN GI+ +R + R Sbjct: 87 MSIEEKMEADGRSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKGFAYIEFADKESVRTAMALDESLFRGRQIKVGAKRTNRPGISTTDRGFPRAR 191
BLAST of SMED30032188 vs. Ensembl Medaka
Match: pabpn1 (poly(A) binding protein nuclear 1 [Source:NCBI gene;Acc:101157012]) HSP 1 Score: 114.775 bits (286), Expect = 1.229e-30 Identity = 51/105 (48.57%), Postives = 71/105 (67.62%), Query Frame = -2 Query: 149 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTQGR 463 +S EE+ E D RSI+V NVDY A+ EEL HF GCG +N++TI KY PKG+AYIEF + ++V+ + LD+S F+ R+IK+ KRTN GI+ +R + R Sbjct: 87 MSIEEKMEADGRSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKGFAYIEFADKESVRTAMALDESLFRGRQIKVGAKRTNRPGISTTDRGFPRAR 191
BLAST of SMED30032188 vs. Ensembl Medaka
Match: PABPN1L (PABPN1 like, cytoplasmic [Source:NCBI gene;Acc:101170990]) HSP 1 Score: 97.8265 bits (242), Expect = 1.676e-24 Identity = 42/99 (42.42%), Postives = 68/99 (68.69%), Query Frame = -2 Query: 167 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNR 463 ++ EER + D+RS++V NVDY A+ +EL HF GCG +N++TI +++ PKG+AYIEF + A + + L ++ F+ R +K+ KRTN+ GI+ +R Sbjct: 68 MTPEERMDADNRSVYVGNVDYGATADELEIHFNGCGPVNRVTILCDRFSGHPKGFAYIEFSDRSAAQSAVGLHETMFRGRVLKVLPKRTNMPGISTTDR 166
BLAST of SMED30032188 vs. Ensembl Medaka
Match: rbm34 (RNA binding motif protein 34 [Source:NCBI gene;Acc:101172304]) HSP 1 Score: 47.3654 bits (111), Expect = 4.914e-6 Identity = 20/73 (27.40%), Postives = 41/73 (56.16%), Query Frame = -2 Query: 212 RSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKI 430 RS+ V N+ + + KHF CG + + + K + KG+ Y+ F++ D+V+++ L+ S+ + R I++ Sbjct: 264 RSVFVGNLPFDIHEQAFRKHFETCGTVEAVRLVRDKDSGLGKGFGYVLFESADSVQLALELNASKLEGRSIRV 336
BLAST of SMED30032188 vs. Planmine SMEST
Match: SMESG000017886.1 (SMESG000017886.1) HSP 1 Score: 354.755 bits (909), Expect = 1.345e-125 Identity = 198/223 (88.79%), Postives = 199/223 (89.24%), Query Frame = -2 Query: 14 EISNECLENVILNDNYESLTFTSSLSEDELLERHILXXXXXXXXXXXXPAPLSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTQGRELGVAKMSLKPAHPGSRYN----------------------GNPNASNSINRGFSSGYRRGGKRFNP 616 EISNECLENVILNDNYESLTFTSSLSEDELLERHILNSNPNSNNIPSYPAPLS EERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNN PKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILT+GRELGVAKMSLKPAHPGSRYN GNPNASNSINRGFSSGYRRGGKRFNP Sbjct: 9 EISNECLENVILNDNYESLTFTSSLSEDELLERHILNSNPNSNNIPSYPAPLSDEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNCPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTRGRELGVAKMSLKPAHPGSRYNGNPNASNSRYHGNPNASNSRYHGNPNASNSINRGFSSGYRRGGKRFNP 231
BLAST of SMED30032188 vs. Planmine SMEST
Match: SMESG000011330.1 (SMESG000011330.1) HSP 1 Score: 115.161 bits (287), Expect = 8.876e-32 Identity = 58/124 (46.77%), Postives = 83/124 (66.94%), Query Frame = -2 Query: 170 EDELLERHILXXXXXXXXXXXXPAP-LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNN 538 +D+ L++HI +S P L+ +E+ E D RSI+V NVDY ++ +EL HF+GCG IN+ITI T+KY PKG+AYIEF D+V + +LDDSEF++R+IK+ KRTN+ G + N Sbjct: 40 DDDNLDQHIQSSVHPKGVNSKSYPPALTDDEKAELDVRSIYVGNVDYGSTAKELEAHFKGCGAINRITILTNKYTGHPKGFAYIEFAMPDSVDTAMLLDDSEFRSRQIKVMPKRTNLPGYSTTN 163
BLAST of SMED30032188 vs. Planmine SMEST
Match: SMESG000011330.1 (SMESG000011330.1) HSP 1 Score: 113.235 bits (282), Expect = 4.733e-31 Identity = 52/98 (53.06%), Postives = 72/98 (73.47%), Query Frame = -2 Query: 170 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNN 463 L+ +E+ E D RSI+V NVDY ++ +EL HF+GCG IN+ITI T+KY PKG+AYIEF D+V + +LDDSEF++R+IK+ KRTN+ G + N Sbjct: 62 LTDDEKAELDVRSIYVGNVDYGSTAKELEAHFKGCGAINRITILTNKYTGHPKGFAYIEFAMPDSVDTAMLLDDSEFRSRQIKVMPKRTNLPGYSTTN 159 The following BLAST results are available for this feature:
BLAST of SMED30032188 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of SMED30032188 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 5
BLAST of SMED30032188 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 5
BLAST of SMED30032188 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of SMED30032188 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 4
BLAST of SMED30032188 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of SMED30032188 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of SMED30032188 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30032188 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of SMED30032188 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 2
BLAST of SMED30032188 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 2
BLAST of SMED30032188 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of SMED30032188 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of SMED30032188 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 3
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30032188 ID=SMED30032188|Name=SMED30032188|organism=Schmidtea mediterranea sexual|type=transcript|length=665bpback to top protein sequence of SMED30032188-orf-1 >SMED30032188-orf-1 ID=SMED30032188-orf-1|Name=SMED30032188-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=211bp MSTGNNSNEISNECLENVILNDNYESLTFTSSLSEDELLERHILNSNPNSback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
|