SMED30032188

Overview
NameSMED30032188
Smed IDSMED30032188
Length (bp)665
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30032188 (SMED30032188) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30032188 (SMED30032188) in cells (dots) of each of the 12 neoblast clusters.

 

back to top

 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30032188 (SMED30032188) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30032188 (SMED30032188) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top

 

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020



SMED30032188

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30032188SMESG000017886.1 SmedASXL_010286SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30032188SMESG000017886.1 SmedASXL_010286SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30032188 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.003851:39029..39692 -2689
v31.030139:3074..3737 -2680
v31.003851:50863..51527 +2604
v31.032626:2703..3381 +2591
v31.041247:1170..1848 +2582
v31.023924:3836..4514 +2573
v31.023924:1374..2345 +2557
v31.009880:6259..6887 +2195
v31.035817:3615..4236 -2153
Homology
[Close]
BLAST of SMED30032188 vs. Ensembl Human
Match: PABPN1 (poly(A) binding protein nuclear 1 [Source:HGNC Symbol;Acc:HGNC:8565])

HSP 1 Score: 112.464 bits (280), Expect = 1.197e-30
Identity = 51/105 (48.57%), Postives = 73/105 (69.52%), Query Frame = -2 
Query:  149 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTQGR 463
            +S EE+ E D+RSI+V NVDY A+ EEL  HF GCG +N++TI   K++  PKG+AYIEF + ++V+ S  LD+S F+ R+IK+  KRTN  GI+  +R   + R
Sbjct:   33 MSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRAR 137
[Close]
BLAST of SMED30032188 vs. Ensembl Human
Match: PABPN1 (poly(A) binding protein nuclear 1 [Source:HGNC Symbol;Acc:HGNC:8565])

HSP 1 Score: 112.464 bits (280), Expect = 1.410e-30
Identity = 51/105 (48.57%), Postives = 73/105 (69.52%), Query Frame = -2 
Query:  149 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTQGR 463
            +S EE+ E D+RSI+V NVDY A+ EEL  HF GCG +N++TI   K++  PKG+AYIEF + ++V+ S  LD+S F+ R+IK+  KRTN  GI+  +R   + R
Sbjct:   33 MSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRAR 137
[Close]
BLAST of SMED30032188 vs. Ensembl Human
Match: BCL2L2-PABPN1 (BCL2L2-PABPN1 readthrough [Source:HGNC Symbol;Acc:HGNC:42959])

HSP 1 Score: 114.39 bits (285), Expect = 9.336e-30
Identity = 51/105 (48.57%), Postives = 73/105 (69.52%), Query Frame = -2 
Query:  149 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTQGR 463
            +S EE+ E D+RSI+V NVDY A+ EEL  HF GCG +N++TI   K++  PKG+AYIEF + ++V+ S  LD+S F+ R+IK+  KRTN  GI+  +R   + R
Sbjct:  188 MSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRAR 292
[Close]
BLAST of SMED30032188 vs. Ensembl Human
Match: BCL2L2-PABPN1 (BCL2L2-PABPN1 readthrough [Source:HGNC Symbol;Acc:HGNC:42959])

HSP 1 Score: 114.39 bits (285), Expect = 9.336e-30
Identity = 51/105 (48.57%), Postives = 73/105 (69.52%), Query Frame = -2 
Query:  149 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTQGR 463
            +S EE+ E D+RSI+V NVDY A+ EEL  HF GCG +N++TI   K++  PKG+AYIEF + ++V+ S  LD+S F+ R+IK+  KRTN  GI+  +R   + R
Sbjct:  188 MSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRAR 292
[Close]
BLAST of SMED30032188 vs. Ensembl Human
Match: PABPN1 (poly(A) binding protein nuclear 1 [Source:HGNC Symbol;Acc:HGNC:8565])

HSP 1 Score: 112.464 bits (280), Expect = 2.252e-29
Identity = 51/105 (48.57%), Postives = 73/105 (69.52%), Query Frame = -2 
Query:  149 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTQGR 463
            +S EE+ E D+RSI+V NVDY A+ EEL  HF GCG +N++TI   K++  PKG+AYIEF + ++V+ S  LD+S F+ R+IK+  KRTN  GI+  +R   + R
Sbjct:  161 MSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRAR 265
[Close]
BLAST of SMED30032188 vs. Ensembl Celegans
Match: sgnh-1 (SGN1 Homolog [Source:UniProtKB/TrEMBL;Acc:O44530])

HSP 1 Score: 94.7449 bits (234), Expect = 3.001e-24
Identity = 46/136 (33.82%), Postives = 79/136 (58.09%), Query Frame = -2 
Query:   62 APLSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTQGRELGVAKMSLKPAHPGSRYNGNPNASNSIN 469
            AP + EE+ + D+RS++V NVD+ ++V E+ +HF  CG + ++TIP  K+    K +A++EF  +++V+++ +L  + F+NRKI +TLKRTN  G             +G    + KPAH     +G P +   + 
Sbjct:   34 APTA-EEQEKTDARSVYVGNVDWKSTVSEIEEHFAVCGKVARVTIPKDKFTGYQKNFAFVEFQKLESVQLALVLSGTMFRNRKIMVTLKRTNKPG-------------MGRTATAQKPAHFAKSSHGKPGSHQGVT 155
[Close]
BLAST of SMED30032188 vs. Ensembl Celegans
Match: pabp-2 (PolyA Binding Protein (Nuclear) [Source:UniProtKB/TrEMBL;Acc:Q93233])

HSP 1 Score: 94.7449 bits (234), Expect = 6.816e-24
Identity = 39/96 (40.62%), Postives = 66/96 (68.75%), Query Frame = -2 
Query:  167 EERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNR 454
            EE+ E D++S++V NVDY A+ EE+ +HF GCG ++++TI   +++  PKG+AY+EF   + ++ +  + DS  + R+IK+  KRTN  G++  NR
Sbjct:   70 EEKAEADAKSVYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVEFTEKEGMQNALAMTDSLLRGRQIKVDPKRTNKPGMSTTNR 165
[Close]
BLAST of SMED30032188 vs. Ensembl Celegans
Match: EEED8.4 (Putative RNA-binding protein EEED8.4 [Source:UniProtKB/Swiss-Prot;Acc:Q09295])

HSP 1 Score: 90.1225 bits (222), Expect = 3.278e-22
Identity = 39/96 (40.62%), Postives = 68/96 (70.83%), Query Frame = -2 
Query:  182 APLSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGI 469
             P + EE+   D++S+ + NVD+++++EE+ +HF+GCG I K TIP  K+  + K +AYIEFD+  +++ + +++ S F++R I +T KRTNI G+
Sbjct:   42 VPPTEEEQKAIDAKSVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRTNIPGM 137
[Close]
BLAST of SMED30032188 vs. Ensembl Celegans
Match: EEED8.12 (Putative RNA-binding protein EEED8.12 [Source:UniProtKB/Swiss-Prot;Acc:Q09301])

HSP 1 Score: 88.1965 bits (217), Expect = 1.878e-21
Identity = 38/96 (39.58%), Postives = 68/96 (70.83%), Query Frame = -2 
Query:  182 APLSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGI 469
             P + EE+   D++S+ + NVD+++++EE+ +HF+GCG I + TIP  K+  + K +AYIEFD+  +++ + +++ S F++R I +T KRTNI G+
Sbjct:   48 VPPTEEEQKAIDAKSVFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRTNIPGM 143
[Close]
BLAST of SMED30032188 vs. Ensembl Celegans
Match: rbm-3.1 (RNA Binding Motif protein homolog [Source:UniProtKB/TrEMBL;Acc:O45712])

HSP 1 Score: 53.9138 bits (128), Expect = 1.067e-9
Identity = 24/75 (32.00%), Postives = 42/75 (56.00%), Query Frame = -2 
Query:  206 SIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEF-DNIDAVKVSKMLDDSEFKNRKIKITL 427
            S++V N  +  + EELG  F   G IN + I   +   RP+G+A+IEF +   A +  + ++ +EF  R +++ L
Sbjct:    6 SVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQMNGAEFNGRPLRVNL 80
[Close]
BLAST of SMED30032188 vs. Ensembl Fly
Match: Pabp2 (gene:FBgn0005648 transcript:FBtr0088785)

HSP 1 Score: 110.923 bits (276), Expect = 8.472e-30
Identity = 57/136 (41.91%), Postives = 83/136 (61.03%), Query Frame = -2 
Query:   80 PLSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILT---QGRELGVAKMSLKPAHPGSR----YNGNPN 466
            PLS EE+ E D+RS++V NVDY AS EEL  HF GCG IN++TI  +K +  PKG+AYIEF + + V+ +  ++++ F+ R+IK+  KRTN  G++  NR      +GR   V++        G+R    Y G  N
Sbjct:   84 PLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGARVSRACCHSTFRGARRAMGYRGRAN 219
[Close]
BLAST of SMED30032188 vs. Ensembl Fly
Match: Pabp2 (gene:FBgn0005648 transcript:FBtr0088786)

HSP 1 Score: 110.923 bits (276), Expect = 8.472e-30
Identity = 57/136 (41.91%), Postives = 83/136 (61.03%), Query Frame = -2 
Query:   80 PLSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILT---QGRELGVAKMSLKPAHPGSR----YNGNPN 466
            PLS EE+ E D+RS++V NVDY AS EEL  HF GCG IN++TI  +K +  PKG+AYIEF + + V+ +  ++++ F+ R+IK+  KRTN  G++  NR      +GR   V++        G+R    Y G  N
Sbjct:   84 PLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGARVSRACCHSTFRGARRAMGYRGRAN 219
[Close]
BLAST of SMED30032188 vs. Ensembl Fly
Match: SC35 (gene:FBgn0265298 transcript:FBtr0306252)

HSP 1 Score: 49.2914 bits (116), Expect = 4.718e-7
Identity = 22/77 (28.57%), Postives = 40/77 (51.95%), Query Frame = -2 
Query:  200 SIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEF-DNIDAVKVSKMLDDSEFKNRKIKITLKR 427
            S+ V N+ Y  + E+L + F  CG +  I IP  +Y    +G+A++ F D  DA    + +D      R++++ + R
Sbjct:   24 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAEDALEAMDGRMLDGRELRVQMAR 100
[Close]
BLAST of SMED30032188 vs. Ensembl Fly
Match: SC35 (gene:FBgn0265298 transcript:FBtr0302910)

HSP 1 Score: 49.2914 bits (116), Expect = 4.718e-7
Identity = 22/77 (28.57%), Postives = 40/77 (51.95%), Query Frame = -2 
Query:  200 SIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEF-DNIDAVKVSKMLDDSEFKNRKIKITLKR 427
            S+ V N+ Y  + E+L + F  CG +  I IP  +Y    +G+A++ F D  DA    + +D      R++++ + R
Sbjct:   24 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAEDALEAMDGRMLDGRELRVQMAR 100
[Close]
BLAST of SMED30032188 vs. Ensembl Fly
Match: SC35 (gene:FBgn0265298 transcript:FBtr0089899)

HSP 1 Score: 49.2914 bits (116), Expect = 4.718e-7
Identity = 22/77 (28.57%), Postives = 40/77 (51.95%), Query Frame = -2 
Query:  200 SIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEF-DNIDAVKVSKMLDDSEFKNRKIKITLKR 427
            S+ V N+ Y  + E+L + F  CG +  I IP  +Y    +G+A++ F D  DA    + +D      R++++ + R
Sbjct:   24 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAEDALEAMDGRMLDGRELRVQMAR 100
[Close]
BLAST of SMED30032188 vs. Ensembl Zebrafish
Match: pabpn1 (poly(A) binding protein, nuclear 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2401])

HSP 1 Score: 112.464 bits (280), Expect = 2.724e-30
Identity = 50/105 (47.62%), Postives = 71/105 (67.62%), Query Frame = -2 
Query:  149 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTQGR 463
            +S EE+ E D RSI+V NVDY A+ EEL  HF GCG +N++TI   K+   PKG+AYIEF + ++V+ +  LD+S F+ R+IK+  KRTN  GI+  +R   + R
Sbjct:   87 MSIEEKIEADGRSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFADKESVRTAMALDESLFRGRQIKVGAKRTNRPGISTTDRGFPRAR 191
[Close]
BLAST of SMED30032188 vs. Ensembl Zebrafish
Match: pabpn1 (poly(A) binding protein, nuclear 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2401])

HSP 1 Score: 112.849 bits (281), Expect = 2.757e-30
Identity = 50/105 (47.62%), Postives = 71/105 (67.62%), Query Frame = -2 
Query:  149 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTQGR 463
            +S EE+ E D RSI+V NVDY A+ EEL  HF GCG +N++TI   K+   PKG+AYIEF + ++V+ +  LD+S F+ R+IK+  KRTN  GI+  +R   + R
Sbjct:   87 MSIEEKIEADGRSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFADKESVRTAMALDESLFRGRQIKVGAKRTNRPGISTTDRGFPRAR 191
[Close]
BLAST of SMED30032188 vs. Ensembl Zebrafish
Match: pabpn1 (poly(A) binding protein, nuclear 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2401])

HSP 1 Score: 112.079 bits (279), Expect = 3.100e-30
Identity = 50/105 (47.62%), Postives = 71/105 (67.62%), Query Frame = -2 
Query:  149 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTQGR 463
            +S EE+ E D RSI+V NVDY A+ EEL  HF GCG +N++TI   K+   PKG+AYIEF + ++V+ +  LD+S F+ R+IK+  KRTN  GI+  +R   + R
Sbjct:   31 MSIEEKIEADGRSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFADKESVRTAMALDESLFRGRQIKVGAKRTNRPGISTTDRGFPRAR 135
[Close]
BLAST of SMED30032188 vs. Ensembl Zebrafish
Match: pabpn1 (poly(A) binding protein, nuclear 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2401])

HSP 1 Score: 112.464 bits (280), Expect = 9.639e-30
Identity = 50/105 (47.62%), Postives = 71/105 (67.62%), Query Frame = -2 
Query:  149 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTQGR 463
            +S EE+ E D RSI+V NVDY A+ EEL  HF GCG +N++TI   K+   PKG+AYIEF + ++V+ +  LD+S F+ R+IK+  KRTN  GI+  +R   + R
Sbjct:   87 MSIEEKIEADGRSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFADKESVRTAMALDESLFRGRQIKVGAKRTNRPGISTTDRGFPRAR 191
[Close]
BLAST of SMED30032188 vs. Ensembl Zebrafish
Match: pabpn1l (PABPN1 like, cytoplasmic [Source:ZFIN;Acc:ZDB-GENE-080709-5])

HSP 1 Score: 104.76 bits (260), Expect = 5.086e-28
Identity = 51/125 (40.80%), Postives = 79/125 (63.20%), Query Frame = -2 
Query:   95 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTQG--RELGVAKMSLKPAHPGSRY 463
            +++EER + D RSI+V NVDY A+ +EL  +F  CG +N++TIP +++   PKG+AYIEF + ++V+ +  LD++ F+ R IK++ KRTNI G +  +  L  G  R  GV      P   G R+
Sbjct:   26 MTHEERIDSDRRSIYVGNVDYGATADELEMYFNSCGHVNRVTIPYNRFTGHPKGFAYIEFSDRESVRTAMALDETLFRGRVIKVSPKRTNIPGFSTTDVYLRGGWSRGRGVRASRFNPFR-GCRF 149
[Close]
BLAST of SMED30032188 vs. Ensembl Xenopus
Match: ccdc113 (coiled-coil domain containing 113 [Source:Xenbase;Acc:XB-GENE-941142])

HSP 1 Score: 114.005 bits (284), Expect = 5.779e-30
Identity = 51/99 (51.52%), Postives = 70/99 (70.71%), Query Frame = -2 
Query:  167 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNR 463
            +S EE+ E D+RSI+V NVDY A+ EEL  HF GCG +N++TI   KY   PKG+AYIEF + ++V+ S  LD+S F+ R+IK+  KRTN  GI+  +R
Sbjct:  152 MSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVVPKRTNRPGISTTDR 250
[Close]
BLAST of SMED30032188 vs. Ensembl Xenopus
Match: pabpn1l (poly(A) binding protein, nuclear 1-like (cytoplasmic) [Source:NCBI gene;Acc:549106])

HSP 1 Score: 102.449 bits (254), Expect = 2.686e-26
Identity = 47/99 (47.47%), Postives = 67/99 (67.68%), Query Frame = -2 
Query:  170 PLSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNN 466
            PLS EE+ E D RS++V NVDY  + ++L  HF  CG IN+ITI   K++  PKGYAYIEF   ++V V+  +D++ F+ R IK+  KRTN+ GI+  +
Sbjct:   81 PLSAEEKKEIDKRSVYVGNVDYGGTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDVAVAMDETVFRGRTIKVLPKRTNMPGISTTD 179
[Close]
BLAST of SMED30032188 vs. Ensembl Xenopus
Match: ccdc113 (coiled-coil domain containing 113 [Source:Xenbase;Acc:XB-GENE-941142])

HSP 1 Score: 71.2478 bits (173), Expect = 2.872e-14
Identity = 41/100 (41.00%), Postives = 56/100 (56.00%), Query Frame = -2 
Query:  167 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKG-YAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNR 463
            +S EE+ E D+RSI+V NVDY A+ EEL  HF GCG +N++TI   KY   PKG + +    NI           S +K    ++  KRTN  GI+  +R
Sbjct:  152 MSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKGPFTFHRCCNICM---------SFYK----QVVPKRTNRPGISTTDR 238
[Close]
BLAST of SMED30032188 vs. Ensembl Xenopus
Match: rbm34 (RNA binding motif protein 34 [Source:NCBI gene;Acc:448232])

HSP 1 Score: 48.9062 bits (115), Expect = 2.341e-6
Identity = 23/73 (31.51%), Postives = 40/73 (54.79%), Query Frame = -2 
Query:  212 RSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKI 430
            RS  + N+ Y    E +  HF  CG +  + I   +     KG+ Y+ F++ DAV+++  L++SE   RKI++
Sbjct:  271 RSAFIGNLPYEIEEEAVRDHFSECGKVQGVRIIRDQKTGIGKGFGYVLFESADAVQLALKLNNSELSGRKIRV 343
[Close]
BLAST of SMED30032188 vs. Ensembl Mouse
Match: Pabpn1 (poly(A) binding protein, nuclear 1 [Source:MGI Symbol;Acc:MGI:1859158])

HSP 1 Score: 112.079 bits (279), Expect = 8.023e-31
Identity = 50/99 (50.51%), Postives = 71/99 (71.72%), Query Frame = -2 
Query:  167 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNR 463
            +S EE+ E D+RSI+V NVDY A+ EEL  HF GCG +N++TI   K++  PKG+AYIEF + ++V+ S  LD+S F+ R+IK+  KRTN  GI+  +R
Sbjct:   61 MSLEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDR 159
[Close]
BLAST of SMED30032188 vs. Ensembl Mouse
Match: Pabpn1 (poly(A) binding protein, nuclear 1 [Source:MGI Symbol;Acc:MGI:1859158])

HSP 1 Score: 112.079 bits (279), Expect = 1.075e-30
Identity = 51/105 (48.57%), Postives = 73/105 (69.52%), Query Frame = -2 
Query:  149 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTQGR 463
            +S EE+ E D+RSI+V NVDY A+ EEL  HF GCG +N++TI   K++  PKG+AYIEF + ++V+ S  LD+S F+ R+IK+  KRTN  GI+  +R   + R
Sbjct:   33 MSLEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRSR 137
[Close]
BLAST of SMED30032188 vs. Ensembl Mouse
Match: Pabpn1 (poly(A) binding protein, nuclear 1 [Source:MGI Symbol;Acc:MGI:1859158])

HSP 1 Score: 112.079 bits (279), Expect = 1.075e-30
Identity = 51/105 (48.57%), Postives = 73/105 (69.52%), Query Frame = -2 
Query:  149 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTQGR 463
            +S EE+ E D+RSI+V NVDY A+ EEL  HF GCG +N++TI   K++  PKG+AYIEF + ++V+ S  LD+S F+ R+IK+  KRTN  GI+  +R   + R
Sbjct:   33 MSLEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRSR 137
[Close]
BLAST of SMED30032188 vs. Ensembl Mouse
Match: Pabpn1 (poly(A) binding protein, nuclear 1 [Source:MGI Symbol;Acc:MGI:1859158])

HSP 1 Score: 112.079 bits (279), Expect = 1.137e-30
Identity = 51/105 (48.57%), Postives = 73/105 (69.52%), Query Frame = -2 
Query:  149 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTQGR 463
            +S EE+ E D+RSI+V NVDY A+ EEL  HF GCG +N++TI   K++  PKG+AYIEF + ++V+ S  LD+S F+ R+IK+  KRTN  GI+  +R   + R
Sbjct:   33 MSLEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRSR 137
[Close]
BLAST of SMED30032188 vs. Ensembl Mouse
Match: Gm20521 (predicted gene 20521 [Source:MGI Symbol;Acc:MGI:5141986])

HSP 1 Score: 113.62 bits (283), Expect = 9.431e-30
Identity = 51/105 (48.57%), Postives = 73/105 (69.52%), Query Frame = -2 
Query:  149 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTQGR 463
            +S EE+ E D+RSI+V NVDY A+ EEL  HF GCG +N++TI   K++  PKG+AYIEF + ++V+ S  LD+S F+ R+IK+  KRTN  GI+  +R   + R
Sbjct:  188 MSLEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRSR 292
[Close]
BLAST of SMED30032188 vs. UniProt/SwissProt
Match: sp|Q6NVP7|PABP2_XENTR (Polyadenylate-binding protein 2 OS=Xenopus tropicalis OX=8364 GN=pabpn1 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 3.061e-29
Identity = 51/99 (51.52%), Postives = 70/99 (70.71%), Query Frame = -2 
Query:  167 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNR 463
            +S EE+ E D+RSI+V NVDY A+ EEL  HF GCG +N++TI   KY   PKG+AYIEF + ++V+ S  LD+S F+ R+IK+  KRTN  GI+  +R
Sbjct:  152 MSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVVPKRTNRPGISTTDR 250
[Close]
BLAST of SMED30032188 vs. UniProt/SwissProt
Match: sp|Q7KNF2|PABP2_DROME (Polyadenylate-binding protein 2 OS=Drosophila melanogaster OX=7227 GN=Pabp2 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.493e-29
Identity = 57/136 (41.91%), Postives = 83/136 (61.03%), Query Frame = -2 
Query:   80 PLSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILT---QGRELGVAKMSLKPAHPGSR----YNGNPN 466
            PLS EE+ E D+RS++V NVDY AS EEL  HF GCG IN++TI  +K +  PKG+AYIEF + + V+ +  ++++ F+ R+IK+  KRTN  G++  NR      +GR   V++        G+R    Y G  N
Sbjct:   84 PLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGARVSRACCHSTFRGARRAMGYRGRAN 219
[Close]
BLAST of SMED30032188 vs. UniProt/SwissProt
Match: sp|Q8CCS6|PABP2_MOUSE (Polyadenylate-binding protein 2 OS=Mus musculus OX=10090 GN=Pabpn1 PE=1 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 8.768e-29
Identity = 51/105 (48.57%), Postives = 73/105 (69.52%), Query Frame = -2 
Query:  149 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTQGR 463
            +S EE+ E D+RSI+V NVDY A+ EEL  HF GCG +N++TI   K++  PKG+AYIEF + ++V+ S  LD+S F+ R+IK+  KRTN  GI+  +R   + R
Sbjct:  157 MSLEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRSR 261
[Close]
BLAST of SMED30032188 vs. UniProt/SwissProt
Match: sp|Q7ZXB8|PAB2B_XENLA (Polyadenylate-binding protein 2-B OS=Xenopus laevis OX=8355 GN=pabpn1-b PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.017e-28
Identity = 50/99 (50.51%), Postives = 70/99 (70.71%), Query Frame = -2 
Query:  167 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNR 463
            +S EE+ E D+RSI+V NVDY A+ EEL  HF GCG +N++TI   K+   PKG+AYIEF + ++V+ S  LD+S F+ R+IK+  KRTN  GI+  +R
Sbjct:  151 MSVEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVVPKRTNRPGISTTDR 249
[Close]
BLAST of SMED30032188 vs. UniProt/SwissProt
Match: sp|Q86U42|PABP2_HUMAN (Polyadenylate-binding protein 2 OS=Homo sapiens OX=9606 GN=PABPN1 PE=1 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 1.155e-28
Identity = 51/105 (48.57%), Postives = 73/105 (69.52%), Query Frame = -2 
Query:  149 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTQGR 463
            +S EE+ E D+RSI+V NVDY A+ EEL  HF GCG +N++TI   K++  PKG+AYIEF + ++V+ S  LD+S F+ R+IK+  KRTN  GI+  +R   + R
Sbjct:  161 MSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRAR 265
[Close]
BLAST of SMED30032188 vs. TrEMBL
Match: G3W0E6 (RRM domain-containing protein OS=Sarcophilus harrisii OX=9305 PE=4 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.621e-32
Identity = 58/107 (54.21%), Postives = 77/107 (71.96%), Query Frame = -2 
Query:  149 APLSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTQGR 469
            A +S +++ E DSRSIHV NVDY A+V+EL +HF GCG +N++TI   K+   PKG+AYIEF N D+VK S  LDDS F+ R+IK+T KRTN+ GI+  NR   + R
Sbjct:   89 ARVSIQQKMEADSRSIHVGNVDYGATVQELEEHFHGCGPVNRVTILCDKFTGHPKGFAYIEFSNKDSVKASMALDDSLFRGRQIKVTPKRTNLPGISTTNRGFPRAR 195
[Close]
BLAST of SMED30032188 vs. TrEMBL
Match: A0A0N4UZD5 (RRM domain-containing protein OS=Enterobius vermicularis OX=51028 GN=EVEC_LOCUS2689 PE=4 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.893e-30
Identity = 58/125 (46.40%), Postives = 86/125 (68.80%), Query Frame = -2 
Query:   89 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTQGRELGVAKMSLKPAHPGSRYNG 463
            LS EE+ E DSRS++V NVDY ++ +EL  HF GCG +N++TI T K++  PKG+AYIEF + +AV+ +  LD+S F+ R+IK++ KRTN  G++  NR   +GR  G A++ +K  + G  Y G
Sbjct:   80 LSMEEKMEADSRSVYVGNVDYCSTAQELAAHFHGCGCVNRVTILTDKFSGHPKGFAYIEFADKEAVQTALQLDESLFRGRQIKVSAKRTNKPGVSTTNR-PPRGRGRGAARVIVKYIYGGG-YRG 202
[Close]
BLAST of SMED30032188 vs. TrEMBL
Match: A0A087UDW2 (Polyadenylate-binding protein 2 (Fragment) OS=Stegodyphus mimosarum OX=407821 GN=X975_18530 PE=4 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.247e-30
Identity = 56/99 (56.57%), Postives = 72/99 (72.73%), Query Frame = -2 
Query:  167 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNR 463
            L+YEE+ E DSRSI+V NVDY A+ EEL +HF GCG IN++TI   KY+  PKG+AYIEF + D+V  S  LD+S F+ R+IK+  KRTN  GI+  NR
Sbjct:   78 LTYEEKMEIDSRSIYVGNVDYGATAEELEQHFHGCGSINRVTIQCDKYSGHPKGFAYIEFADKDSVSTSTALDESLFRGRQIKVMPKRTNRPGISTTNR 176
[Close]
BLAST of SMED30032188 vs. TrEMBL
Match: A0A5E4NE09 (RRM domain-containing protein OS=Cinara cedri OX=506608 GN=CINCED_3A009648 PE=4 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.341e-30
Identity = 63/151 (41.72%), Postives = 89/151 (58.94%), Query Frame = -2 
Query:   29 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNR-ILTQGRELGVAKMSLKPAHPGSRYNGNPNASNSINRGFSSGYR-----RGG 463
            LS +E+ E D+RS++V NVDY+A+ EEL  HF GCG IN++TI  +K++  PKG+AYIEF +ID+V  +  +DDS F+ R+IK+  KRTN  GI+  NR + ++GR +               Y G P         F  G+R     RGG
Sbjct:  101 LSEQEKAEADARSVYVGNVDYAATAEELETHFHGCGSINRVTILCNKFDGHPKGFAYIEFADIDSVHTAMAMDDSLFRGRQIKVNPKRTNKPGISTTNRPVASRGRAM---------------YRGRPTTRGGTQSSFYGGFRPTRRPRGG 236
[Close]
BLAST of SMED30032188 vs. TrEMBL
Match: A0A5E4NHF7 (RNA recognition motif domain OS=Cinara cedri OX=506608 GN=CINCED_3A009648 PE=4 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.600e-30
Identity = 60/143 (41.96%), Postives = 86/143 (60.14%), Query Frame = -2 
Query:   38 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNR-ILTQGRELGVAKMSLKPAHPGSRYNGNPNASNSINRGFSSGYR 463
            LS +E+ E D+RS++V NVDY+A+ EEL  HF GCG IN++TI  +K++  PKG+AYIEF +ID+V  +  +DDS F+ R+IK+  KRTN  GI+  NR + ++GR +               Y G P         F  G+R
Sbjct:  101 LSEQEKAEADARSVYVGNVDYAATAEELETHFHGCGSINRVTILCNKFDGHPKGFAYIEFADIDSVHTAMAMDDSLFRGRQIKVNPKRTNKPGISTTNRPVASRGRAM---------------YRGRPTTRGGTQSSFYGGFR 228
[Close]
BLAST of SMED30032188 vs. Ensembl Cavefish
Match: pabpn1 (poly(A) binding protein, nuclear 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2401])

HSP 1 Score: 112.464 bits (280), Expect = 8.326e-31
Identity = 50/105 (47.62%), Postives = 71/105 (67.62%), Query Frame = -2 
Query:  149 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTQGR 463
            +S EE+ E D RSI+V NVDY A+ EEL  HF GCG +N++TI   K+   PKG+AYIEF + ++V+ +  LD+S F+ R+IK+  KRTN  GI+  +R   + R
Sbjct:   31 MSIEEKMEADGRSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFADKESVRTAMALDESLFRGRQIKVGAKRTNRPGISTTDRGFPRAR 135
[Close]
BLAST of SMED30032188 vs. Ensembl Cavefish
Match: pabpn1 (poly(A) binding protein, nuclear 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2401])

HSP 1 Score: 113.235 bits (282), Expect = 1.795e-30
Identity = 50/105 (47.62%), Postives = 71/105 (67.62%), Query Frame = -2 
Query:  149 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTQGR 463
            +S EE+ E D RSI+V NVDY A+ EEL  HF GCG +N++TI   K+   PKG+AYIEF + ++V+ +  LD+S F+ R+IK+  KRTN  GI+  +R   + R
Sbjct:   87 MSIEEKMEADGRSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFADKESVRTAMALDESLFRGRQIKVGAKRTNRPGISTTDRGFPRAR 191
[Close]
BLAST of SMED30032188 vs. Ensembl Cavefish
Match: pabpn1 (poly(A) binding protein, nuclear 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2401])

HSP 1 Score: 112.849 bits (281), Expect = 4.529e-30
Identity = 50/105 (47.62%), Postives = 71/105 (67.62%), Query Frame = -2 
Query:  149 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTQGR 463
            +S EE+ E D RSI+V NVDY A+ EEL  HF GCG +N++TI   K+   PKG+AYIEF + ++V+ +  LD+S F+ R+IK+  KRTN  GI+  +R   + R
Sbjct:   87 MSIEEKMEADGRSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFADKESVRTAMALDESLFRGRQIKVGAKRTNRPGISTTDRGFPRAR 191
[Close]
BLAST of SMED30032188 vs. Ensembl Cavefish
Match: pabpn1 (poly(A) binding protein, nuclear 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2401])

HSP 1 Score: 106.686 bits (265), Expect = 1.432e-27
Identity = 49/105 (46.67%), Postives = 70/105 (66.67%), Query Frame = -2 
Query:  149 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTQGR 463
            +S EE+ E D RSI+V NVDY A+ EEL  HF GCG +N++TI   K+   PK +AYIEF + ++V+ +  LD+S F+ R+IK+  KRTN  GI+  +R   + R
Sbjct:   86 MSIEEKMEADGRSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPK-FAYIEFADKESVRTAMALDESLFRGRQIKVGAKRTNRPGISTTDRGFPRAR 189
[Close]
BLAST of SMED30032188 vs. Ensembl Cavefish
Match: PABPN1L (PABPN1 like, cytoplasmic [Source:HGNC Symbol;Acc:HGNC:37237])

HSP 1 Score: 101.293 bits (251), Expect = 8.289e-26
Identity = 43/98 (43.88%), Postives = 69/98 (70.41%), Query Frame = -2 
Query:  170 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNN 463
            +++EER + D+RS++V NVDY  + +EL  HF GCG +N++TI   K+   PKG+AYIEF + ++V+ +  LD++ F+ R IK+  KRTN+ GI+  +
Sbjct:   60 MTHEERIDADNRSVYVGNVDYGTTADELEIHFNGCGHVNRVTILCDKFTGHPKGFAYIEFSDRESVRTAMALDETLFRGRVIKVLPKRTNMPGISTTD 157
[Close]
BLAST of SMED30032188 vs. Ensembl Sea Lamprey
Match: pabpn1 (poly(A) binding protein, nuclear 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2401])

HSP 1 Score: 111.309 bits (277), Expect = 2.155e-30
Identity = 48/98 (48.98%), Postives = 69/98 (70.41%), Query Frame = -2 
Query:  170 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNN 463
            +S+EE+ E D+RSI+V NVDY A+ EEL  HF GCG +N++TI   K+   PKG+AYIEF   ++++ +  LDDS F+ R+IK+  KRTN  GI+  +
Sbjct:   87 MSFEEKMEADARSIYVGNVDYHATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFSEKESIRTAMALDDSLFRGRQIKVLPKRTNRPGISSTD 184
[Close]
BLAST of SMED30032188 vs. Ensembl Sea Lamprey
Match: rbm34 (RNA binding motif protein 34 [Source:ZFIN;Acc:ZDB-GENE-040718-77])

HSP 1 Score: 49.6766 bits (117), Expect = 1.448e-7
Identity = 22/73 (30.14%), Postives = 38/73 (52.05%), Query Frame = -2 
Query:  212 RSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKI 430
            RS+ + N+ Y    + +  HF  CG +  + +   + +   KG+ YI F   DAV ++  LD SE   RK+++
Sbjct:  213 RSVFIGNLPYDVEEDRIRSHFEPCGPVESVRVVRDRESGMGKGFGYILFKGTDAVLLALHLDGSEMAGRKVRV 285
[Close]
BLAST of SMED30032188 vs. Ensembl Yeast
Match: SGN1 (Cytoplasmic RNA-binding protein; contains an RNA recognition motif (RRM); may have a role in mRNA translation, as suggested by genetic interactions with genes encoding proteins involved in translational initiation [Source:SGD;Acc:S000001440])

HSP 1 Score: 72.0182 bits (175), Expect = 9.215e-16
Identity = 39/100 (39.00%), Postives = 57/100 (57.00%), Query Frame = -2 
Query:  176 LSYEER----FEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITK 463
            LS EE+     E DSRSI V N+    + E++  HF+ CG I +IT+   +    PKGY YIEF++    + +  L+  E K +KI ++ KRTNI G  +
Sbjct:   49 LSKEEKHAHQLEADSRSIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYREKALQLNGGELKGKKIAVSRKRTNIPGFNR 148
[Close]
BLAST of SMED30032188 vs. Ensembl Yeast
Match: NOP12 (Nucleolar protein involved in pre-25S rRNA processing; also involved in biogenesis of large 60S ribosomal subunit; contains an RNA recognition motif (RRM); binds to Ebp2; similar to Nop13p and Nsr1p [Source:SGD;Acc:S000005401])

HSP 1 Score: 51.2174 bits (121), Expect = 3.092e-8
Identity = 25/70 (35.71%), Postives = 40/70 (57.14%), Query Frame = -2 
Query:  221 RSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRK 430
            RSI V N+D+    E L KHF  CG I  + I      N  KG+AY++F ++ +V  + +L++   K++K
Sbjct:  279 RSIFVGNLDFEEIEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDLQSVNKALLLNEKPMKSQK 348
[Close]
BLAST of SMED30032188 vs. Ensembl Nematostella
Match: EDO46407 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RPZ7])

HSP 1 Score: 113.235 bits (282), Expect = 1.131e-31
Identity = 49/100 (49.00%), Postives = 73/100 (73.00%), Query Frame = -2 
Query:  170 APLSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNN 469
             P ++EE+ E D+RS++V NVDYSA+ EEL +HF GCG +N++TI   K++  PKG+AY+EF + D+V  + +L DS FK R+IK+ LKRTN  G++  +
Sbjct:   27 GPKTFEEKAEVDARSVYVGNVDYSATAEELEQHFHGCGSVNRVTILCDKFSGHPKGFAYVEFSDKDSVDNAVLLSDSLFKGRQIKVVLKRTNRPGVSSTD 126
[Close]
BLAST of SMED30032188 vs. Ensembl Medaka
Match: pabpn1 (poly(A) binding protein nuclear 1 [Source:NCBI gene;Acc:101157012])

HSP 1 Score: 114.39 bits (285), Expect = 6.115e-31
Identity = 51/105 (48.57%), Postives = 71/105 (67.62%), Query Frame = -2 
Query:  149 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTQGR 463
            +S EE+ E D RSI+V NVDY A+ EEL  HF GCG +N++TI   KY   PKG+AYIEF + ++V+ +  LD+S F+ R+IK+  KRTN  GI+  +R   + R
Sbjct:   87 MSIEEKMEADGRSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKGFAYIEFADKESVRTAMALDESLFRGRQIKVGAKRTNRPGISTTDRGFPRAR 191
[Close]
BLAST of SMED30032188 vs. Ensembl Medaka
Match: pabpn1 (poly(A) binding protein nuclear 1 [Source:NCBI gene;Acc:101157012])

HSP 1 Score: 114.775 bits (286), Expect = 1.209e-30
Identity = 51/105 (48.57%), Postives = 71/105 (67.62%), Query Frame = -2 
Query:  149 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTQGR 463
            +S EE+ E D RSI+V NVDY A+ EEL  HF GCG +N++TI   KY   PKG+AYIEF + ++V+ +  LD+S F+ R+IK+  KRTN  GI+  +R   + R
Sbjct:   87 MSIEEKMEADGRSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKGFAYIEFADKESVRTAMALDESLFRGRQIKVGAKRTNRPGISTTDRGFPRAR 191
[Close]
BLAST of SMED30032188 vs. Ensembl Medaka
Match: pabpn1 (poly(A) binding protein nuclear 1 [Source:NCBI gene;Acc:101157012])

HSP 1 Score: 114.775 bits (286), Expect = 1.229e-30
Identity = 51/105 (48.57%), Postives = 71/105 (67.62%), Query Frame = -2 
Query:  149 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTQGR 463
            +S EE+ E D RSI+V NVDY A+ EEL  HF GCG +N++TI   KY   PKG+AYIEF + ++V+ +  LD+S F+ R+IK+  KRTN  GI+  +R   + R
Sbjct:   87 MSIEEKMEADGRSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKGFAYIEFADKESVRTAMALDESLFRGRQIKVGAKRTNRPGISTTDRGFPRAR 191
[Close]
BLAST of SMED30032188 vs. Ensembl Medaka
Match: PABPN1L (PABPN1 like, cytoplasmic [Source:NCBI gene;Acc:101170990])

HSP 1 Score: 97.8265 bits (242), Expect = 1.676e-24
Identity = 42/99 (42.42%), Postives = 68/99 (68.69%), Query Frame = -2 
Query:  167 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNR 463
            ++ EER + D+RS++V NVDY A+ +EL  HF GCG +N++TI   +++  PKG+AYIEF +  A + +  L ++ F+ R +K+  KRTN+ GI+  +R
Sbjct:   68 MTPEERMDADNRSVYVGNVDYGATADELEIHFNGCGPVNRVTILCDRFSGHPKGFAYIEFSDRSAAQSAVGLHETMFRGRVLKVLPKRTNMPGISTTDR 166
[Close]
BLAST of SMED30032188 vs. Ensembl Medaka
Match: rbm34 (RNA binding motif protein 34 [Source:NCBI gene;Acc:101172304])

HSP 1 Score: 47.3654 bits (111), Expect = 4.914e-6
Identity = 20/73 (27.40%), Postives = 41/73 (56.16%), Query Frame = -2 
Query:  212 RSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKI 430
            RS+ V N+ +    +   KHF  CG +  + +   K +   KG+ Y+ F++ D+V+++  L+ S+ + R I++
Sbjct:  264 RSVFVGNLPFDIHEQAFRKHFETCGTVEAVRLVRDKDSGLGKGFGYVLFESADSVQLALELNASKLEGRSIRV 336
[Close]
BLAST of SMED30032188 vs. Planmine SMEST
Match: SMESG000017886.1 (SMESG000017886.1)

HSP 1 Score: 354.755 bits (909), Expect = 1.345e-125
Identity = 198/223 (88.79%), Postives = 199/223 (89.24%), Query Frame = -2 
Query:   14 EISNECLENVILNDNYESLTFTSSLSEDELLERHILXXXXXXXXXXXXPAPLSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTQGRELGVAKMSLKPAHPGSRYN----------------------GNPNASNSINRGFSSGYRRGGKRFNP 616
            EISNECLENVILNDNYESLTFTSSLSEDELLERHILNSNPNSNNIPSYPAPLS EERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNN PKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILT+GRELGVAKMSLKPAHPGSRYN                      GNPNASNSINRGFSSGYRRGGKRFNP
Sbjct:    9 EISNECLENVILNDNYESLTFTSSLSEDELLERHILNSNPNSNNIPSYPAPLSDEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNCPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNNRILTRGRELGVAKMSLKPAHPGSRYNGNPNASNSRYHGNPNASNSRYHGNPNASNSINRGFSSGYRRGGKRFNP 231
[Close]
BLAST of SMED30032188 vs. Planmine SMEST
Match: SMESG000011330.1 (SMESG000011330.1)

HSP 1 Score: 115.161 bits (287), Expect = 8.876e-32
Identity = 58/124 (46.77%), Postives = 83/124 (66.94%), Query Frame = -2 
Query:  170 EDELLERHILXXXXXXXXXXXXPAP-LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNN 538
            +D+ L++HI +S            P L+ +E+ E D RSI+V NVDY ++ +EL  HF+GCG IN+ITI T+KY   PKG+AYIEF   D+V  + +LDDSEF++R+IK+  KRTN+ G +  N
Sbjct:   40 DDDNLDQHIQSSVHPKGVNSKSYPPALTDDEKAELDVRSIYVGNVDYGSTAKELEAHFKGCGAINRITILTNKYTGHPKGFAYIEFAMPDSVDTAMLLDDSEFRSRQIKVMPKRTNLPGYSTTN 163
[Close]
BLAST of SMED30032188 vs. Planmine SMEST
Match: SMESG000011330.1 (SMESG000011330.1)

HSP 1 Score: 113.235 bits (282), Expect = 4.733e-31
Identity = 52/98 (53.06%), Postives = 72/98 (73.47%), Query Frame = -2 
Query:  170 LSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKITIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNIHGITKNN 463
            L+ +E+ E D RSI+V NVDY ++ +EL  HF+GCG IN+ITI T+KY   PKG+AYIEF   D+V  + +LDDSEF++R+IK+  KRTN+ G +  N
Sbjct:   62 LTDDEKAELDVRSIYVGNVDYGSTAKELEAHFKGCGAINRITILTNKYTGHPKGFAYIEFAMPDSVDTAMLLDDSEFRSRQIKVMPKRTNLPGYSTTN 159
The following BLAST results are available for this feature:
BLAST of SMED30032188 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
PABPN11.197e-3048.57poly(A) binding protein nuclear 1 [Source:HGNC Sym... [more]
PABPN11.410e-3048.57poly(A) binding protein nuclear 1 [Source:HGNC Sym... [more]
BCL2L2-PABPN19.336e-3048.57BCL2L2-PABPN1 readthrough [Source:HGNC Symbol;Acc:... [more]
BCL2L2-PABPN19.336e-3048.57BCL2L2-PABPN1 readthrough [Source:HGNC Symbol;Acc:... [more]
PABPN12.252e-2948.57poly(A) binding protein nuclear 1 [Source:HGNC Sym... [more]
back to top
BLAST of SMED30032188 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5
Match NameE-valueIdentityDescription
sgnh-13.001e-2433.82SGN1 Homolog [Source:UniProtKB/TrEMBL;Acc:O44530][more]
pabp-26.816e-2440.63PolyA Binding Protein (Nuclear) [Source:UniProtKB... [more]
EEED8.43.278e-2240.63Putative RNA-binding protein EEED8.4 [Source:UniP... [more]
EEED8.121.878e-2139.58Putative RNA-binding protein EEED8.12 [Source:Uni... [more]
rbm-3.11.067e-932.00RNA Binding Motif protein homolog [Source:UniProt... [more]
back to top
BLAST of SMED30032188 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Pabp28.472e-3041.91gene:FBgn0005648 transcript:FBtr0088785[more]
Pabp28.472e-3041.91gene:FBgn0005648 transcript:FBtr0088786[more]
SC354.718e-728.57gene:FBgn0265298 transcript:FBtr0306252[more]
SC354.718e-728.57gene:FBgn0265298 transcript:FBtr0302910[more]
SC354.718e-728.57gene:FBgn0265298 transcript:FBtr0089899[more]
back to top
BLAST of SMED30032188 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
pabpn12.724e-3047.62poly(A) binding protein, nuclear 1 [Source:ZFIN;Ac... [more]
pabpn12.757e-3047.62poly(A) binding protein, nuclear 1 [Source:ZFIN;Ac... [more]
pabpn13.100e-3047.62poly(A) binding protein, nuclear 1 [Source:ZFIN;Ac... [more]
pabpn19.639e-3047.62poly(A) binding protein, nuclear 1 [Source:ZFIN;Ac... [more]
pabpn1l5.086e-2840.80PABPN1 like, cytoplasmic [Source:ZFIN;Acc:ZDB-GENE... [more]
back to top
BLAST of SMED30032188 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 4
Match NameE-valueIdentityDescription
ccdc1135.779e-3051.52coiled-coil domain containing 113 [Source:Xenbase;... [more]
pabpn1l2.686e-2647.47poly(A) binding protein, nuclear 1-like (cytoplasm... [more]
ccdc1132.872e-1441.00coiled-coil domain containing 113 [Source:Xenbase;... [more]
rbm342.341e-631.51RNA binding motif protein 34 [Source:NCBI gene;Acc... [more]
back to top
BLAST of SMED30032188 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Pabpn18.023e-3150.51poly(A) binding protein, nuclear 1 [Source:MGI Sym... [more]
Pabpn11.075e-3048.57poly(A) binding protein, nuclear 1 [Source:MGI Sym... [more]
Pabpn11.075e-3048.57poly(A) binding protein, nuclear 1 [Source:MGI Sym... [more]
Pabpn11.137e-3048.57poly(A) binding protein, nuclear 1 [Source:MGI Sym... [more]
Gm205219.431e-3048.57predicted gene 20521 [Source:MGI Symbol;Acc:MGI:51... [more]
back to top
BLAST of SMED30032188 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q6NVP7|PABP2_XENTR3.061e-2951.52Polyadenylate-binding protein 2 OS=Xenopus tropica... [more]
sp|Q7KNF2|PABP2_DROME8.493e-2941.91Polyadenylate-binding protein 2 OS=Drosophila mela... [more]
sp|Q8CCS6|PABP2_MOUSE8.768e-2948.57Polyadenylate-binding protein 2 OS=Mus musculus OX... [more]
sp|Q7ZXB8|PAB2B_XENLA1.017e-2850.51Polyadenylate-binding protein 2-B OS=Xenopus laevi... [more]
sp|Q86U42|PABP2_HUMAN1.155e-2848.57Polyadenylate-binding protein 2 OS=Homo sapiens OX... [more]
back to top
BLAST of SMED30032188 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
G3W0E61.621e-3254.21RRM domain-containing protein OS=Sarcophilus harri... [more]
A0A0N4UZD51.893e-3046.40RRM domain-containing protein OS=Enterobius vermic... [more]
A0A087UDW22.247e-3056.57Polyadenylate-binding protein 2 (Fragment) OS=Steg... [more]
A0A5E4NE093.341e-3041.72RRM domain-containing protein OS=Cinara cedri OX=5... [more]
A0A5E4NHF73.600e-3041.96RNA recognition motif domain OS=Cinara cedri OX=50... [more]
back to top
BLAST of SMED30032188 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
pabpn18.326e-3147.62poly(A) binding protein, nuclear 1 [Source:ZFIN;Ac... [more]
pabpn11.795e-3047.62poly(A) binding protein, nuclear 1 [Source:ZFIN;Ac... [more]
pabpn14.529e-3047.62poly(A) binding protein, nuclear 1 [Source:ZFIN;Ac... [more]
pabpn11.432e-2746.67poly(A) binding protein, nuclear 1 [Source:ZFIN;Ac... [more]
PABPN1L8.289e-2643.88PABPN1 like, cytoplasmic [Source:HGNC Symbol;Acc:H... [more]
back to top
BLAST of SMED30032188 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 2
Match NameE-valueIdentityDescription
pabpn12.155e-3048.98poly(A) binding protein, nuclear 1 [Source:ZFIN;Ac... [more]
rbm341.448e-730.14RNA binding motif protein 34 [Source:ZFIN;Acc:ZDB-... [more]
back to top
BLAST of SMED30032188 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 2
Match NameE-valueIdentityDescription
SGN19.215e-1639.00Cytoplasmic RNA-binding protein; contains an RNA r... [more]
NOP123.092e-835.71Nucleolar protein involved in pre-25S rRNA process... [more]
back to top
BLAST of SMED30032188 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO464071.131e-3149.00Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
back to top
BLAST of SMED30032188 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5
Match NameE-valueIdentityDescription
pabpn16.115e-3148.57poly(A) binding protein nuclear 1 [Source:NCBI gen... [more]
pabpn11.209e-3048.57poly(A) binding protein nuclear 1 [Source:NCBI gen... [more]
pabpn11.229e-3048.57poly(A) binding protein nuclear 1 [Source:NCBI gen... [more]
PABPN1L1.676e-2442.42PABPN1 like, cytoplasmic [Source:NCBI gene;Acc:101... [more]
rbm344.914e-627.40RNA binding motif protein 34 [Source:NCBI gene;Acc... [more]
back to top
BLAST of SMED30032188 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3
Match NameE-valueIdentityDescription
SMESG000017886.11.345e-12588.79SMESG000017886.1[more]
SMESG000011330.18.876e-3246.77SMESG000011330.1[more]
SMESG000011330.14.733e-3153.06SMESG000011330.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30032188 ID=SMED30032188|Name=SMED30032188|organism=Schmidtea mediterranea sexual|type=transcript|length=665bp
TATAGTTCTAGCAAGGATTGAATCTCTTGCCTCCACGACGATAACCGGAA
GAAAATCCTCTATTTATTGAGTTTGATGCATTTGGATTCCCATTATATCT
TGATCCGGGATGAGCTGGTTTCAAAGACATTTTCGCTACTCCCAGTTCAC
GACCTTGTGTAAGAATTCGGTTATTCTTCGTTATTCCATGAATATTAGTT
CTTTTCAATGTAATTTTTATCTTTCTGTTTTTGAATTCTGAATCGTCGAG
CATTTTACTTACTTTAACAGCATCAATGTTGTCGAATTCAATGTAAGCAT
AACCTTTCGGGCGGTTGTTATATTTGCTAGTAGGGATGGTGATTTTATTA
ATTACTCCACATCCTCTGAAATGTTTTCCCAATTCTTCTACAGACGCACT
ATAATCAACATTACTGACATGAATTGACCTGCTGTCTTTTTCAAATCGTT
CTTCATAGGAAAGAGGTGCTGGATAAGATGGAATGTTATTGGAGTTAGGG
TTGGAGTTTAGAATATGTCTTTCTAAGAGTTCATCTTCTGATAAAGAAGA
AGTAAAGGTTAGTGACTCATAATTATCATTCAAGATCACATTTTCTAAAC
ATTCATTAGAGATCTCATTTGAATTATTTCCAGTTGACATGTTTTTGTTG
TTTTAATATATGTTT
back to top

protein sequence of SMED30032188-orf-1

>SMED30032188-orf-1 ID=SMED30032188-orf-1|Name=SMED30032188-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=211bp
MSTGNNSNEISNECLENVILNDNYESLTFTSSLSEDELLERHILNSNPNS
NNIPSYPAPLSYEERFEKDSRSIHVSNVDYSASVEELGKHFRGCGVINKI
TIPTSKYNNRPKGYAYIEFDNIDAVKVSKMLDDSEFKNRKIKITLKRTNI
HGITKNNRILTQGRELGVAKMSLKPAHPGSRYNGNPNASNSINRGFSSGY
RRGGKRFNPC*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002109X1 cell
PLANA:0002111X2 cell
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: molecular function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 72..144
e-value: 1.0E-11
score: 55.0
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 74..142
e-value: 6.8E-10
score: 38.6
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 71..148
score: 12.339
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 65..153
e-value: 6.6E-18
score: 66.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 182..197
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 175..198
NoneNo IPR availablePANTHERPTHR23236:SF21PABPN1 PROTEIN-RELATEDcoord: 55..184
NoneNo IPR availablePANTHERPTHR23236EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4Hcoord: 55..184
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 54..153