TRAF-4
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30032067 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 8
Homology
BLAST of TRAF-4 vs. Ensembl Human
Match: TRAF6 (TNF receptor associated factor 6 [Source:HGNC Symbol;Acc:HGNC:12036]) HSP 1 Score: 53.1434 bits (126), Expect = 6.734e-7 Identity = 34/110 (30.91%), Postives = 52/110 (47.27%), Query Frame = 2 Query: 98 INQYDFKFDASRYSDLICGMCGKLLSEAMQSSCSCKFCRRCIEIHCENNSVTCPGLSELCKSTVLDLDEDVIVDHTTNKRISLLKVKCPFDQCPFEDKLIHMESHVKMCD 427 I YD +FD S C +C L EA+Q+ C +FC+ CI + CP +E+ L+ + D+ + I L VKCP + C + +L H+E H C+ Sbjct: 53 IQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEIL------LENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDHQAHCE 156
BLAST of TRAF-4 vs. Ensembl Human
Match: TRAF6 (TNF receptor associated factor 6 [Source:HGNC Symbol;Acc:HGNC:12036]) HSP 1 Score: 53.1434 bits (126), Expect = 6.734e-7 Identity = 34/110 (30.91%), Postives = 52/110 (47.27%), Query Frame = 2 Query: 98 INQYDFKFDASRYSDLICGMCGKLLSEAMQSSCSCKFCRRCIEIHCENNSVTCPGLSELCKSTVLDLDEDVIVDHTTNKRISLLKVKCPFDQCPFEDKLIHMESHVKMCD 427 I YD +FD S C +C L EA+Q+ C +FC+ CI + CP +E+ L+ + D+ + I L VKCP + C + +L H+E H C+ Sbjct: 53 IQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEIL------LENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDHQAHCE 156
BLAST of TRAF-4 vs. Ensembl Fly
Match: Traf6 (gene:FBgn0265464 transcript:FBtr0071188) HSP 1 Score: 48.9062 bits (115), Expect = 7.310e-6 Identity = 34/153 (22.22%), Postives = 76/153 (49.67%), Query Frame = 2 Query: 665 DQIIENQKTLSVKFEENFNEKQSDQQSRMKTNSTGKRERIKKVPKSQNILGELLWKIDNFSATKKSLMFGDDRWLDSAEFCTSPSRYKMQLRMWIG--EPNV-DILIKMISNEDDKYIQWPIKVEVNIGLLNPENGNLKVNETKIIEYQTASF 1114 +QI++ V E+ E+++ ++ M+ R++ P+ N G ++W+I+ A L + + S E TSP YK R+ I +P+V + + ++ +E+D ++ WP K + + +++P + L ++T + + + +F Sbjct: 283 EQIVQTMYQRIVVLEQRTREQETRLEN-MQKQLRLARQQAPVDPRYSN--GTIVWRIEQLGALVARLRANANNQVYSHECYTSPHGYKFCARLNIQPRKPHVLSLHVHLMQSENDYHLDWPFKGRIKLCMVHPADATLSQHDTIMTKPEILAF 432
BLAST of TRAF-4 vs. Ensembl Zebrafish
Match: traf6 (TNF receptor-associated factor 6 [Source:NCBI gene;Acc:554561]) HSP 1 Score: 52.7582 bits (125), Expect = 5.890e-7 Identity = 38/177 (21.47%), Postives = 78/177 (44.07%), Query Frame = 2 Query: 719 NEKQSDQQSRMKTNSTGKRERIKKVPKSQNILGELLWKIDNFSATKKSLMFGDDRWLDSAEFCTSPSRYKMQLRMWIGEPN-------VDILIKMISNEDDKYIQWPIKVEVNIGLLNPENG--NLKVNETK---------IIEYQTASFTSKAYFHFHNSSVNKVVVKHDSLVVKC 1195 N+ Q +Q + ++ E +++ ++Q G +W+++NFS ++ G L S F T YK+ LR+ + P+ + + + + E D + WP++ + + +L+ G +++V ETK + F + H + + VK D L+V+C Sbjct: 344 NDTQKNQVTELRRKLVSLEESTREL-EAQQYQGIYVWRVENFSHHLRNQEAGQPIVLHSPPFYTGRPGYKLCLRLHLQTPSAPRCSNFISLFVHTMQGEFDSQLSWPLQGTIRLAVLDQVEGQHHIEVMETKPDLQAFQRPTVMRNPKGFGYVTFLHL-QALRQRGFVKEDVLLVRC 518
BLAST of TRAF-4 vs. Ensembl Zebrafish
Match: traf6 (TNF receptor-associated factor 6 [Source:NCBI gene;Acc:554561]) HSP 1 Score: 52.7582 bits (125), Expect = 5.890e-7 Identity = 38/177 (21.47%), Postives = 78/177 (44.07%), Query Frame = 2 Query: 719 NEKQSDQQSRMKTNSTGKRERIKKVPKSQNILGELLWKIDNFSATKKSLMFGDDRWLDSAEFCTSPSRYKMQLRMWIGEPN-------VDILIKMISNEDDKYIQWPIKVEVNIGLLNPENG--NLKVNETK---------IIEYQTASFTSKAYFHFHNSSVNKVVVKHDSLVVKC 1195 N+ Q +Q + ++ E +++ ++Q G +W+++NFS ++ G L S F T YK+ LR+ + P+ + + + + E D + WP++ + + +L+ G +++V ETK + F + H + + VK D L+V+C Sbjct: 344 NDTQKNQVTELRRKLVSLEESTREL-EAQQYQGIYVWRVENFSHHLRNQEAGQPIVLHSPPFYTGRPGYKLCLRLHLQTPSAPRCSNFISLFVHTMQGEFDSQLSWPLQGTIRLAVLDQVEGQHHIEVMETKPDLQAFQRPTVMRNPKGFGYVTFLHL-QALRQRGFVKEDVLLVRC 518
BLAST of TRAF-4 vs. Ensembl Zebrafish
Match: traf6 (TNF receptor-associated factor 6 [Source:NCBI gene;Acc:554561]) HSP 1 Score: 52.7582 bits (125), Expect = 5.890e-7 Identity = 38/177 (21.47%), Postives = 78/177 (44.07%), Query Frame = 2 Query: 719 NEKQSDQQSRMKTNSTGKRERIKKVPKSQNILGELLWKIDNFSATKKSLMFGDDRWLDSAEFCTSPSRYKMQLRMWIGEPN-------VDILIKMISNEDDKYIQWPIKVEVNIGLLNPENG--NLKVNETK---------IIEYQTASFTSKAYFHFHNSSVNKVVVKHDSLVVKC 1195 N+ Q +Q + ++ E +++ ++Q G +W+++NFS ++ G L S F T YK+ LR+ + P+ + + + + E D + WP++ + + +L+ G +++V ETK + F + H + + VK D L+V+C Sbjct: 344 NDTQKNQVTELRRKLVSLEESTREL-EAQQYQGIYVWRVENFSHHLRNQEAGQPIVLHSPPFYTGRPGYKLCLRLHLQTPSAPRCSNFISLFVHTMQGEFDSQLSWPLQGTIRLAVLDQVEGQHHIEVMETKPDLQAFQRPTVMRNPKGFGYVTFLHL-QALRQRGFVKEDVLLVRC 518
BLAST of TRAF-4 vs. Ensembl Xenopus
Match: egf (epidermal growth factor [Source:Xenbase;Acc:XB-GENE-951823]) HSP 1 Score: 52.7582 bits (125), Expect = 8.380e-7 Identity = 33/110 (30.00%), Postives = 51/110 (46.36%), Query Frame = 2 Query: 98 INQYDFKFDASRYSDLICGMCGKLLSEAMQSSCSCKFCRRCIEIHCENNSVTCPGLSELCKSTVLDLDEDVIVDHTTNKRISLLKVKCPFDQCPFEDKLIHMESHVKMCD 427 + YD +FD S C +C L EA+Q+ C +FC+ CI + CP +E ++ + D+ + I L+VKCP C +L H+E H+ CD Sbjct: 55 VQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACILKSIRDAGHKCPVDNESL------MENQLFPDNFAKREILSLRVKCPSQGCTETMELRHLERHLVRCD 158
BLAST of TRAF-4 vs. Ensembl Mouse
Match: Traf6 (TNF receptor-associated factor 6 [Source:MGI Symbol;Acc:MGI:108072]) HSP 1 Score: 51.6026 bits (122), Expect = 1.850e-6 Identity = 34/110 (30.91%), Postives = 51/110 (46.36%), Query Frame = 2 Query: 98 INQYDFKFDASRYSDLICGMCGKLLSEAMQSSCSCKFCRRCIEIHCENNSVTCPGLSELCKSTVLDLDEDVIVDHTTNKRISLLKVKCPFDQCPFEDKLIHMESHVKMCD 427 I YD +FD S C +C L EA+Q+ C +FC+ CI + CP +E+ L+ + D+ + I L VKCP C + +L H+E H C+ Sbjct: 53 IQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEIL------LENQLFPDNFAKREILSLTVKCPNKGCLQKMELRHLEDHQVHCE 156
BLAST of TRAF-4 vs. UniProt/SwissProt
Match: sp|Q6DJN2|TRF6B_XENLA (TNF receptor-associated factor 6-B OS=Xenopus laevis OX=8355 GN=traf6-b PE=2 SV=1) HSP 1 Score: 55.0694 bits (131), Expect = 9.808e-7 Identity = 33/109 (30.28%), Postives = 51/109 (46.79%), Query Frame = 2 Query: 98 INQYDFKFDASRYSDLICGMCGKLLSEAMQSSCSCKFCRRCIEIHCENNSVTCPGLSELCKSTVLDLDEDVIVDHTTNKRISLLKVKCPFDQCPFEDKLIHMESHVKMC 424 + YD +FD S C +C L EA+Q+ C +FC+ CI + CP +E+ ++ + D+ + I LKVKCP C +L H+E H+ C Sbjct: 55 VQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACIVKSLRDAGHKCPVDNEIL------MENQLFPDNFAKREILSLKVKCPSQGCTETMELRHLERHLGQC 157
BLAST of TRAF-4 vs. UniProt/SwissProt
Match: sp|Q3ZCC3|TRAF6_BOVIN (TNF receptor-associated factor 6 OS=Bos taurus OX=9913 GN=TRAF6 PE=2 SV=1) HSP 1 Score: 53.5286 bits (127), Expect = 2.951e-6 Identity = 34/110 (30.91%), Postives = 52/110 (47.27%), Query Frame = 2 Query: 98 INQYDFKFDASRYSDLICGMCGKLLSEAMQSSCSCKFCRRCIEIHCENNSVTCPGLSELCKSTVLDLDEDVIVDHTTNKRISLLKVKCPFDQCPFEDKLIHMESHVKMCD 427 I YD +FD S C +C L EA+Q+ C +FC+ CI + CP +E+ L+ + D+ + I L VKCP + C + +L H+E H C+ Sbjct: 54 IQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEIL------LENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEEHQAHCE 157
BLAST of TRAF-4 vs. UniProt/SwissProt
Match: sp|Q3MV19|TRF6A_XENLA (TNF receptor-associated factor 6-A OS=Xenopus laevis OX=8355 GN=traf6-a PE=1 SV=1) HSP 1 Score: 53.5286 bits (127), Expect = 3.020e-6 Identity = 34/109 (31.19%), Postives = 52/109 (47.71%), Query Frame = 2 Query: 98 INQYDFKFDASRYSDLICGMCGKLLSEAMQSSCSCKFCRRCIEIHCENNSVTCPGLSELCKSTVLDLDEDVIVDHTTNKRISLLKVKCPFDQCPFEDKLIHMESHVKMC 424 I YD +FD S C +C L EA+Q+ C +FC+ CI N CP +E+ +++ + D+ + I L+VKCP C +L H+E H+ C Sbjct: 55 IQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACILKSLRNAGHKCPVDNEIL------MEKQLFPDNFAKREILSLRVKCPNLGCTDTMELRHLEHHLVQC 157
BLAST of TRAF-4 vs. UniProt/SwissProt
Match: sp|Q9Y4K3|TRAF6_HUMAN (TNF receptor-associated factor 6 OS=Homo sapiens OX=9606 GN=TRAF6 PE=1 SV=1) HSP 1 Score: 53.1434 bits (126), Expect = 3.234e-6 Identity = 34/110 (30.91%), Postives = 52/110 (47.27%), Query Frame = 2 Query: 98 INQYDFKFDASRYSDLICGMCGKLLSEAMQSSCSCKFCRRCIEIHCENNSVTCPGLSELCKSTVLDLDEDVIVDHTTNKRISLLKVKCPFDQCPFEDKLIHMESHVKMCD 427 I YD +FD S C +C L EA+Q+ C +FC+ CI + CP +E+ L+ + D+ + I L VKCP + C + +L H+E H C+ Sbjct: 53 IQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEIL------LENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDHQAHCE 156
BLAST of TRAF-4 vs. UniProt/SwissProt
Match: sp|B6CJY4|TRAF6_CERAT (TNF receptor-associated factor 6 OS=Cercocebus atys OX=9531 GN=TRAF6 PE=2 SV=1) HSP 1 Score: 53.1434 bits (126), Expect = 3.529e-6 Identity = 34/110 (30.91%), Postives = 52/110 (47.27%), Query Frame = 2 Query: 98 INQYDFKFDASRYSDLICGMCGKLLSEAMQSSCSCKFCRRCIEIHCENNSVTCPGLSELCKSTVLDLDEDVIVDHTTNKRISLLKVKCPFDQCPFEDKLIHMESHVKMCD 427 I YD +FD S C +C L EA+Q+ C +FC+ CI + CP +E+ L+ + D+ + I L VKCP + C + +L H+E H C+ Sbjct: 53 IQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEIL------LENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDHQAHCE 156
BLAST of TRAF-4 vs. TrEMBL
Match: I1ZID8 (TNF receptor associated factor-2 (Fragment) OS=Schmidtea mediterranea OX=79327 PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 2.897e-14 Identity = 54/183 (29.51%), Postives = 99/183 (54.10%), Query Frame = 2 Query: 62 MSAERFESIWFLINQYDFKFDASRYSDLICGMCGKLLSEAMQSSCSCKFCRRCIEIHCENNSVTCPGLSELCKSTVLDLDEDVIVDHTTNKRISLLKVKCPFDQCPFEDKLIHMESHVKMCDKKPKS-----RQQSXXXXXXXXXXXXXXXXXVIHLKLLIESIDNLRNENKMLSNEIISLKE 595 M+AE+ I L+ Y+F+ + +L C +C LL A QS C C+FC +CI + ++ CPG + CK L + ++ D+ N++I+ ++VKCP + C +L+ +E H+++C K ++ ++ + +L N +Q H KL+I+ I N+RN+ L+ + + L+E Sbjct: 1 MTAEK---INRLLITYNFEVEGGVPDNLKCDLCKNLLVNACQSRCGCRFCSKCIMEYVSRGNLYCPGGTSECKEENLTICSNIHTDYRVNRKIAKMRVKCPEETCKVYCELVDIEEHLRLCTMKSQNCPFFVLGCNQPKMVIQDLTNHLQNGTFQHSKLIIDIISNMRNDFFGLTTKEVELRE 180
BLAST of TRAF-4 vs. TrEMBL
Match: T1E101 (TRAF-6 OS=Dendrocoelum lacteum OX=27895 PE=2 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 4.896e-14 Identity = 105/445 (23.60%), Postives = 194/445 (43.60%), Query Frame = 2 Query: 62 MSAERFESIWFLINQYDFK-FDASRYSDLICGMCGKLLSEAMQSSCSCKFCRRCIEIHCENNSVTCPGLSELCKSTVLDLDEDVIVDHTTNKRIS----------------LLKVKCPFDQCPFE-------------DKLIHMESHVKMCDKKPKSRQQ----SXXXXXXXXXXXXXXXXXVIHLKLLIES---------------IDNLRNENKML----------SNEIISL-----KETQKLSQISMEKFRKQIEKMNEKMDQI----IENQ-KTLSVK-FEENFNEKQSDQQSRMKTNSTGKRERIKKVPKSQNILGELLWKIDNFSATKKSLMFGDDRWLDSAEFCTSPSRYKMQLRMWIGEPNVDILIKMISNEDDKYIQWPIKVEVNIGLLNPENGNLKVNETKIIEYQTASFTSKAYFHFHNSSVNKVVVKHDSLV 1186 M + +++ L+++Y+ K D S +DL+C +C KL+ +A +S+C C +C CI I+ N CPG CK L+L+ DV + + RIS LL++K D+C E + L+ E + D+ + Q NE ++ HLK ++ I+ LRN++ M+ NE+I+L E +KL ++ FR++IE M ++ + I+NQ K L + F N ++++ K N+ + ++ N+ + +W+I+ +S ++++ D + DS + YK L ++I N+ + ++ E D +++WP++ V + ++ E +LK ++T + +Y T KA F N + DSLV Sbjct: 1 MIPSKLDNVQELLSKYNVKRVDESVNNDLLCILCNKLMRDACESACGCHYCYTCIRIYLSQNHNYCPGDKTECKEDYLNLEGDVFRNIRLSTRISRIVVKCPNIRCNYTSELLRLKEHLDKCTPESVECPCVTIGCEEEPLLKDEMAKHLTDQVLRHTQLIMSFCNELKSEINHNNETTKEDISHLKEVLRVQKALNDEKTAQMEFLIEELRNKDNMILVLSQDIQEVKNEMITLLTSKESELKKLKS-DIQIFRQEIEFMKNDLEVVGSTDIKNQVKDLKKEIFGIKMNIDSNNEERERKMNNLIRLNKL-----CPNVDMDFMWRIEEYSKKRRTVT---DVYSDSFQ----SHNYKFCLNLYIYGDNLGLWCVIMKGEKDDFLEWPMRRTVTLSII--EQDSLKTHKTTVFQYDTYQRNKKA-FDRPKDERNDYCIGTDSLV 429
BLAST of TRAF-4 vs. TrEMBL
Match: E0VE99 (Uncharacterized protein OS=Pediculus humanus subsp. corporis OX=121224 GN=8234062 PE=4 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 4.873e-12 Identity = 92/384 (23.96%), Postives = 160/384 (41.67%), Query Frame = 2 Query: 149 CGMCGKLLSEAMQSSCSCKFCRRCIEIHCENNSVTCPGLSELCKSTVLDLDEDVIVDHTTNKRISLLKVKCPFDQCPFEDKLIHMESHVKM-------CDKK----------PKSRQQSXXXXXXXXXXXXXXXXXVIHLKLLIESIDNLRNENKMLSNEIISLKETQKLSQISMEKFRKQIEKMNEKMDQIIENQKTLSVKFE-----ENFNEKQSDQQSRMKTNSTGKRERIKKVPKSQNILGELLWKIDNFSATKKSLMFGDDRWLDSAEFCTSPSRYKMQLRMWIGEPNVD---ILIKMISNEDDKYIQWPIKVEVNIGLLNPENGNLKVNETKIIEYQTASF-------TSKAYFHFHNSSVNKVV----VKHDSLVVK 1192 C +C L E + +SC +FC C+ + E+ +CP +L+ D+ DH T + I C C E L M+ HV KK P ++++ L + ++ + +HL L+ S NLR + LK T K+S + + E + D+ +N + +E E +Q+ Q ++K +RI++V ++ G+ LW+ID+F S+ GD R S F TSP+ YK+ R+ + + D +LI ++ D + WP + +++P + L + ET + SF +KA+ + S+NK+ + DSL+VK Sbjct: 19 CPICLSCLKEPVLTSCGHRFCSSCLNLWLESKGESCP-----VDGGILNKKLDLFPDHFTRREILNRTTICKL--CKLEIGLSEMDEHVSSHHHHSSRASKKVSEDNGKGCCPFGTFGCDVDVTENTLKDHLEKDLNLHLNLVANSHLNLREK---------LLKNTDKMSDDVLAQESLMWEPQEKGKDR--QNASLMRALYERVVVLEQRCHEQNAQMEKLKGRLEESNDRIREV-SLRHACGQYLWRIDDFGKKIGSMKSGDKRVFFSEGFYTSPNGYKICGRINLSPVDSDMLSLLIHIMQTPHDHTLVWPFTGRIQFAIVHPTDSKLTIAETIMSRPDLDSFKKPARDINTKAFGYPQFISINKIFNNGYLIDDSLIVK 383
BLAST of TRAF-4 vs. TrEMBL
Match: A0A0C9PK53 (Traf6_0 protein OS=Fopius arisanus OX=64838 GN=Traf6_1 PE=4 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 5.862e-12 Identity = 84/328 (25.61%), Postives = 148/328 (45.12%), Query Frame = 2 Query: 149 CGMCGKLLSEAMQSSCSCKFCRRCIEIHCENNSVTCPGLSELCKSTVLDLDEDVIVDHTTNKRISLLKVKCPFDQ--CPFEDKLIHMESHVKMCDKKPKSRQQSXXXXXXXXXXXXXXXXXVIHLKLLIESIDN--LRNENKMLSNEIISLKETQKLSQISM--------EKFRKQIEKMNEKMDQIIENQKTLSVKFEENFNEKQSDQQSRMKTNSTGKRERIKKVPKS--QNILGELLWKIDNFSATKKSLMFGDDRWLDSAEFCTSPSRYKMQLRMWIGEPNVD---ILIKMISNEDDKYIQWPIKVEVNIGLLNPENGNLKVNE 1081 C +C + + + +SC +FC +C+ E S +CP S K + D+ +D T + IS K KCP+ Q C E I M+SH+ C+ K + + ++ + + E L+ +E N L K + IIS E K ++ S + + Q EK ++Q++++ V E+ N +QS S KT + + +N G +W+ID F+ K + M + L S EF T + YK+ RM I + N+D I++ ++ +E+D + WP ++ L++PE+ + + E Sbjct: 35 CPICLSCMRDPILTSCGHRFCSKCLHKWLEEKSNSCPVDSTPLKPE----NGDLFLDRYTKREISQYKTKCPYHQFGCDVELSPIDMDSHINDCEFKKNASRDDKIYCDFKYVGCTEAFEEREDLQRHLEVNHNIHLMMMGKTMEQMIISQSEVNKNARDSKLWDPPPKNNREQLQPEKSQSNVEQLLKDLYERIVVLEQQ-NREQSIIISNQKTTIMSIQNSLTHFGDESLRNCNGIYIWRIDGFTQ-KITEMMAESMMLYSDEFYTHKNGYKVCGRMNISKKNIDFLSIVLHLVPSENDDALDWPFIGVISFILVHPEDSDKSIRE 356
BLAST of TRAF-4 vs. TrEMBL
Match: T1DBK6 (TRAF-4 OS=Dendrocoelum lacteum OX=27895 PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.799e-11 Identity = 38/98 (38.78%), Postives = 57/98 (58.16%), Query Frame = 2 Query: 140 DLICGMCGKLLSEAMQSSCSCKFCRRCIEIHCENNSVTCPGLSELCKSTVLDLDEDVIVDHTTNKRISLLKVKCPFDQCPFEDKLIHMESHVKMCDKK 433 +L C MC +L +A+Q+ C C++C+ CI+ + EN C E C+S + I D TNK ISLLKVKC ++ C FED L ++ H+ C+ + Sbjct: 28 NLKCVMCQDILLDAIQTDCGCRYCKECIDNYLENGEKECVAEYEDCRSVI----TSYIYDRATNKEISLLKVKCLYEGCVFEDTLKSIKGHLDFCEYR 121
BLAST of TRAF-4 vs. Ensembl Cavefish
Match: traf6 (TNF receptor associated factor 6 [Source:NCBI gene;Acc:103021325]) HSP 1 Score: 55.8398 bits (133), Expect = 5.686e-8 Identity = 43/209 (20.57%), Postives = 95/209 (45.45%), Query Frame = 2 Query: 620 MEKFRKQIEKMNEKMDQIIENQKTLSVKFEENFNEKQSDQQSRMKTNSTGKRERIKKVPKSQNILGELLWKIDNFSATKKSLMFGDDRWLDSAEFCTSPSRYKMQLRMWIGEPN-------VDILIKMISNEDDKYIQWPIKVEVNIGLLNPENG--NLKVNETK----IIEYQTASFTSKAY----FHFHNSSVNKVVVKHDSLVVKC 1195 +++ R+ + ++ ++ + + LS++ NE QS Q + ++ E ++++ ++Q G +W+++ FS ++ G L S F T YK+ LR+ + PN + + + + E D + WP++ + + +L+ G +++V ETK + T K + F + + V+ D L+V+C Sbjct: 316 LQQMRETVLELESRLVRQDHKLRELSIR-----NETQSTQMTELRKKLASLEESMREL-QAQQYQGVYVWRLEGFSTHIRNQEAGHPVVLHSPPFYTGRPGYKLCLRLHLQTPNAPRCSNYISLFVHTMQGEFDSQLSWPLQGTIRLAVLDQAEGQHHVEVMETKPDLQAFQRPTVQRNPKGFGYVTFMQLQALHQRGFVRDDVLMVRC 518
BLAST of TRAF-4 vs. Ensembl Cavefish
Match: traf6 (TNF receptor associated factor 6 [Source:NCBI gene;Acc:103021325]) HSP 1 Score: 55.8398 bits (133), Expect = 5.686e-8 Identity = 43/209 (20.57%), Postives = 95/209 (45.45%), Query Frame = 2 Query: 620 MEKFRKQIEKMNEKMDQIIENQKTLSVKFEENFNEKQSDQQSRMKTNSTGKRERIKKVPKSQNILGELLWKIDNFSATKKSLMFGDDRWLDSAEFCTSPSRYKMQLRMWIGEPN-------VDILIKMISNEDDKYIQWPIKVEVNIGLLNPENG--NLKVNETK----IIEYQTASFTSKAY----FHFHNSSVNKVVVKHDSLVVKC 1195 +++ R+ + ++ ++ + + LS++ NE QS Q + ++ E ++++ ++Q G +W+++ FS ++ G L S F T YK+ LR+ + PN + + + + E D + WP++ + + +L+ G +++V ETK + T K + F + + V+ D L+V+C Sbjct: 316 LQQMRETVLELESRLVRQDHKLRELSIR-----NETQSTQMTELRKKLASLEESMREL-QAQQYQGVYVWRLEGFSTHIRNQEAGHPVVLHSPPFYTGRPGYKLCLRLHLQTPNAPRCSNYISLFVHTMQGEFDSQLSWPLQGTIRLAVLDQAEGQHHVEVMETKPDLQAFQRPTVQRNPKGFGYVTFMQLQALHQRGFVRDDVLMVRC 518
BLAST of TRAF-4 vs. Ensembl Cavefish
Match: traf6 (TNF receptor associated factor 6 [Source:NCBI gene;Acc:103021325]) HSP 1 Score: 55.4546 bits (132), Expect = 6.754e-8 Identity = 43/209 (20.57%), Postives = 95/209 (45.45%), Query Frame = 2 Query: 620 MEKFRKQIEKMNEKMDQIIENQKTLSVKFEENFNEKQSDQQSRMKTNSTGKRERIKKVPKSQNILGELLWKIDNFSATKKSLMFGDDRWLDSAEFCTSPSRYKMQLRMWIGEPN-------VDILIKMISNEDDKYIQWPIKVEVNIGLLNPENG--NLKVNETK----IIEYQTASFTSKAY----FHFHNSSVNKVVVKHDSLVVKC 1195 +++ R+ + ++ ++ + + LS++ NE QS Q + ++ E ++++ ++Q G +W+++ FS ++ G L S F T YK+ LR+ + PN + + + + E D + WP++ + + +L+ G +++V ETK + T K + F + + V+ D L+V+C Sbjct: 292 LQQMRETVLELESRLVRQDHKLRELSIR-----NETQSTQMTELRKKLASLEESMREL-QAQQYQGVYVWRLEGFSTHIRNQEAGHPVVLHSPPFYTGRPGYKLCLRLHLQTPNAPRCSNYISLFVHTMQGEFDSQLSWPLQGTIRLAVLDQAEGQHHVEVMETKPDLQAFQRPTVQRNPKGFGYVTFMQLQALHQRGFVRDDVLMVRC 494
BLAST of TRAF-4 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000002130.1 (pep scaffold:Pmarinus_7.0:GL484662:8457:12718:-1 gene:ENSPMAG00000001936.1 transcript:ENSPMAT00000002130.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 53.5286 bits (127), Expect = 4.789e-8 Identity = 31/119 (26.05%), Postives = 55/119 (46.22%), Query Frame = 2 Query: 776 ERIKKVPKSQNILGELLWKIDNFSATKKSLMFGDDRWLDSAEFCTSPSRYKMQLRMWIGEPNVD------ILIKMISNEDDKYIQWPIKVEVNIGLLNPENGNLKVNETKIIEYQTASF 1114 ER +V ++ G+L+WKI +++ K+ G L S F TSP YKM R ++ V + ++ E D ++WP + V + LL+ +++T + + SF Sbjct: 255 ERRLQVLETAGYSGKLVWKIRDYARRKQEAASGRTLSLYSQPFYTSPFGYKMCARAYLNGDGVGRGTHLSLFFVVMRGEYDALLEWPFRRRVTLSLLDQGAARRHLSDTFTPDPASGSF 373
BLAST of TRAF-4 vs. Ensembl Nematostella
Match: EDO41243 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S4Z7]) HSP 1 Score: 51.6026 bits (122), Expect = 4.202e-7 Identity = 33/108 (30.56%), Postives = 51/108 (47.22%), Query Frame = 2 Query: 107 YDFKFDASRYSDLICGMCGKLLSEAMQSSCSCKFCRRCIEIHCENNS-VTCPGLSELCKSTVLDLDEDVIVDHTTNKRISLLKVKCPFDQCPFEDKLIHMESHVKMCD 427 YD +F + + C +C L +Q+ C +FC+ C++ S CP E LDL +DV +D + I VKCP C +E +L +E+H + CD Sbjct: 11 YDSEFVIAVAEEYTCRICHLPLRVPVQTKCGHRFCKECLDEASRRKSRAECPMDRE-----PLDLKKDVFLDKAAERTILSFLVKCPCKGCKWEAELRDLEAHARNCD 113
BLAST of TRAF-4 vs. Ensembl Nematostella
Match: EDO48394 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RJK8]) HSP 1 Score: 50.8322 bits (120), Expect = 8.460e-7 Identity = 35/125 (28.00%), Postives = 61/125 (48.80%), Query Frame = 2 Query: 62 MSAERFESIWFLINQYDFKFDASRYSDLICGMCGKLLSEAMQSSCSCKFCRRCIEIHCENNS-VTCPGLSELCKSTVLDLDEDVIVDHTTNKRISLLKVKCPFDQCPFEDKLIHMESHVKMCDKK 433 + E F+ F+I D +LIC +C +++E + +SC +C+ CIE C VTCP +E K + + D T++ + L+VKC + C ++ +L + H+K+C K Sbjct: 10 YAGEGFDLDQFIIPPND---------ELICAICHMVVNEPVLTSCGHSYCKYCIEKWCNGKEVVTCPVDNEQLKPS------QIFPDKKTDRIVLSLEVKCTNNPCRWKGELRQKQKHLKICSHK 119
BLAST of TRAF-4 vs. Ensembl Nematostella
Match: EDO27426 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T9A1]) HSP 1 Score: 48.1358 bits (113), Expect = 1.153e-6 Identity = 33/111 (29.73%), Postives = 51/111 (45.95%), Query Frame = 2 Query: 101 NQYDFKFDASRYSDLICGMCGKLLSEAMQSSCSCKFCRRCI-EIHCENNSVTCPGLSELCKSTVLDLDEDVIVDHTTNKRISLLKVKCPFDQCPFEDKLIHMESHVKMCDK 430 + YD +F + + C +C L +Q+ C +FC+ C+ E + CP E LDL +DV +D + I VKCP C +E +L +E +K C K Sbjct: 9 SGYDSEFVIAVAEEYTCRICHLPLRVPVQTKCGHRFCKECLDEASRRKSRAECPMDRE-----PLDLKKDVFLDKAAERTILSFLVKCPCKGCKWEAELRDLEVSMKGCGK 114
BLAST of TRAF-4 vs. Ensembl Nematostella
Match: EDO38901 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SBN3]) HSP 1 Score: 46.9802 bits (110), Expect = 3.825e-6 Identity = 32/117 (27.35%), Postives = 54/117 (46.15%), Query Frame = 2 Query: 95 LINQYDFKFDASRYSD-------LICGMCGKLLSEAMQSSCSCKFCRRCIEIHCENNSVTCPGLSELCKSTVLDLDEDVIVDHTTNKRISLLKVKCPFDQ--CPFEDKLIHMESHVK 418 ++ Q+DF +Y+D C CG +L +A+Q+ C ++C CI S C S +C STV + D ++ + L V C CP+E +L H ++H++ Sbjct: 16 MVLQFDFAMVGYKYTDKDTIEASHRCSKCGFILKDAVQTDCGHRYCLSCISPLVSQGSTRC---SAVCNSTV--VKSKWFRDKIADREVLDLPVHCVNQHLGCPWEGELRHRQAHIE 127
BLAST of TRAF-4 vs. Ensembl Medaka
Match: traf6 (TNF receptor associated factor 6 [Source:NCBI gene;Acc:101161132]) HSP 1 Score: 53.5286 bits (127), Expect = 3.073e-7 Identity = 34/110 (30.91%), Postives = 52/110 (47.27%), Query Frame = 2 Query: 98 INQYDFKFDASRYSDLICGMCGKLLSEAMQSSCSCKFCRRCIEIHCENNSVTCPGLSELCKSTVLDLDED-VIVDHTTNKRISLLKVKCPFDQCPFEDKLIHMESHVKMC 424 + YD +FD S C +C L A+Q+ C +FC+ CIE + CP +E+ L ED + D+ + I L V+CP C + +L H+E H+ C Sbjct: 61 LQGYDVEFDPPLESKYECPICLMALRNAIQTRCGHRFCKSCIEKSIRDTGQRCPVDNEM-------LSEDQLFPDNFAKREILSLTVRCPNSDCGEKMELRHLEKHLAQC 163
BLAST of TRAF-4 vs. Planmine SMEST
Match: SMESG000015063.1 (SMESG000015063.1) HSP 1 Score: 751.51 bits (1939), Expect = 0.000e+0 Identity = 387/389 (99.49%), Postives = 387/389 (99.49%), Query Frame = 2 Query: 62 MSAERFESIWFLINQYDFKFDASRYSDLICGMCGKLLSEAMQSSCSCKFCRRCIEIHCENNSVTCPGLSELCKSTVLDLDEDVIVDHTTNKRISLLKVKCPFDQCPFEDKLIHMESHVKMCDKKPKSRQQSXXXXXXXXXXXXXXXXXVIHLKLLIESIDNLRNENKMLSNEIISLKETQKLSQISMEKFRKQIEKMNEKMDQIIENQKTLSVKFEENFNEKQSDQQSRMKTNSTGKRERIKKVPKSQNILGELLWKIDNFSATKKSLMFGDDRWLDSAEFCTSPSRYKMQLRMWIGEPNVDILIKMISNEDDKYIQWPIKVEVNIGLLNPENGNLKVNETKIIEYQTASFTSKAYFHFHNSSVNKVVVKHDSLVVKCLAKDLIVDNRK 1228 MSAERFESIWFLINQYDFKFDASRYSDLICGMCGKLLSEAMQSSCSCKFCRRCIEIHCENNSVTCPGLSELCKSTVLDLDEDVIVDHTTNKRISLLKVKCPFDQCPFEDKLI MESHVKMCDKKPKSRQQSELNLENAELINEIQINEVIHLKLLIESIDNLRNENKMLSNEIISLKETQKLSQISMEKFRKQIEKMNEKMDQIIENQKTLSVKFEENFNEKQSDQQSRMKTNSTGKRERIKKVPKSQNILGELLWKIDNFSATKKSLMFGDDRWLDSAEFCTSPSRYKMQLRMWIGEPNVDILIKMISNEDDKYIQWPIKVEV IGLLNPENGNLKVNETKIIEYQTASFTSKAYFHFHNSSVNKVVVKHDSLVVKCLAKDLIVDNRK Sbjct: 1 MSAERFESIWFLINQYDFKFDASRYSDLICGMCGKLLSEAMQSSCSCKFCRRCIEIHCENNSVTCPGLSELCKSTVLDLDEDVIVDHTTNKRISLLKVKCPFDQCPFEDKLIQMESHVKMCDKKPKSRQQSELNLENAELINEIQINEVIHLKLLIESIDNLRNENKMLSNEIISLKETQKLSQISMEKFRKQIEKMNEKMDQIIENQKTLSVKFEENFNEKQSDQQSRMKTNSTGKRERIKKVPKSQNILGELLWKIDNFSATKKSLMFGDDRWLDSAEFCTSPSRYKMQLRMWIGEPNVDILIKMISNEDDKYIQWPIKVEVTIGLLNPENGNLKVNETKIIEYQTASFTSKAYFHFHNSSVNKVVVKHDSLVVKCLAKDLIVDNRK 389
BLAST of TRAF-4 vs. Planmine SMEST
Match: SMESG000015063.1 (SMESG000015063.1) HSP 1 Score: 738.799 bits (1906), Expect = 0.000e+0 Identity = 383/389 (98.46%), Postives = 383/389 (98.46%), Query Frame = 2 Query: 62 MSAERFESIWFLINQYDFKFDASRYSDLICGMCGKLLSEAMQSSCSCKFCRRCIEIHCENNSVTCPGLSELCKSTVLDLDEDVIVDHTTNKRISLLKVKCPFDQCPFEDKLIHMESHVKMCDKKPKSRQQSXXXXXXXXXXXXXXXXXVIHLKLLIESIDNLRNENKMLSNEIISLKETQKLSQISMEKFRKQIEKMNEKMDQIIENQKTLSVKFEENFNEKQSDQQSRMKTNSTGKRERIKKVPKSQNILGELLWKIDNFSATKKSLMFGDDRWLDSAEFCTSPSRYKMQLRMWIGEPNVDILIKMISNEDDKYIQWPIKVEVNIGLLNPENGNLKVNETKIIEYQTASFTSKAYFHFHNSSVNKVVVKHDSLVVKCLAKDLIVDNRK 1228 MSAERFESIWFLINQYDFKFDASRYSDLICGMCGKLLSEAMQSSCSCKFCRRCIEIHCENNSVTCPGLSELCKSTVLDLDEDVIVDHTTNKRISLLKVKCPFDQCPFEDKLI MESHVKMCDKKPKSRQQSELNLENAELINEIQINEVIHLKLLIESIDNLRNENKMLSNEIISLKETQ ISMEKFRKQIEKMNEKMDQIIENQKTLSVKFEENFNEKQSDQQSRMKTNSTGKRERIKKVPKSQNILGELLWKIDNFSATKKSLMFGDDRWLDSAEFCTSPSRYKMQLRMWIGEPNVDILIKMISNEDDKYIQWPIKVEV IGLLNPENGNLKVNETKIIEYQTASFTSKAYFHFHNSSVNKVVVKHDSLVVKCLAKDLIVDNRK Sbjct: 1 MSAERFESIWFLINQYDFKFDASRYSDLICGMCGKLLSEAMQSSCSCKFCRRCIEIHCENNSVTCPGLSELCKSTVLDLDEDVIVDHTTNKRISLLKVKCPFDQCPFEDKLIQMESHVKMCDKKPKSRQQSELNLENAELINEIQINEVIHLKLLIESIDNLRNENKMLSNEIISLKETQ----ISMEKFRKQIEKMNEKMDQIIENQKTLSVKFEENFNEKQSDQQSRMKTNSTGKRERIKKVPKSQNILGELLWKIDNFSATKKSLMFGDDRWLDSAEFCTSPSRYKMQLRMWIGEPNVDILIKMISNEDDKYIQWPIKVEVTIGLLNPENGNLKVNETKIIEYQTASFTSKAYFHFHNSSVNKVVVKHDSLVVKCLAKDLIVDNRK 385
BLAST of TRAF-4 vs. Planmine SMEST
Match: SMESG000026595.1 (SMESG000026595.1) HSP 1 Score: 151.754 bits (382), Expect = 6.648e-41 Identity = 105/376 (27.93%), Postives = 184/376 (48.94%), Query Frame = 2 Query: 62 MSAERFESIWFLINQYDFKFDASRYSDLICGMCGKLLSEAMQSSCSCKFCRRCIEIHCENNSVTCPGLSELCKSTVLDLDEDVIVDHTTNKRISLLKVKCPFDQCPFEDKLIHMESHVKMCDKKPKSRQQ-----SXXXXXXXXXXXXXXXXXVIHLKLLIESIDNLRNENKMLSNEIISLKETQKLSQISMEKFRK-------QIEKMNEKMDQIIENQKTLSVKFEE----NFNEKQSDQQSRMKT--------NSTGKRERIKKVPKSQNI----------------LGELLWKIDNFSATKKSLMFGDDRWLDSAEFCTSPSRYKMQLRMWIGEPNVDILIKMISNEDDKYIQWPIKVEVNIGLLNPENGNL 1069 M E FE +W L+ + DF + + +DL+C +C KL+++A Q+ C C++C CIE + + S CPG S+ C+ +++ +D+I+D+ N +IS + VKCP C F+++L +E+H++ C++ P S ++ + E+ + + + H KLLI+ I+NLRNE + + NE+I K + S + M + K +IE +N K+D + +L ++ + + K+S +S N + ++I + + I LGEL WKID S + W S F + YKM L + GE V++ ++ E+D + WP K V I ++ NG + Sbjct: 1 MINEIFEDVWQLMKEIDFVYKSEIPNDLMCNICNKLMTKASQAQCGCRYCSDCIESYLDGKSKFCPGKSKFCQVKLINFKKDIIIDYAVNVKISEIIVKCPRINCEFQEQLSTIENHMRTCNENPTSCPYFEFGCNKFEVLRNEISDHLYTDSYSHNKLLIDFINNLRNEIESIKNEMIEFKTENRFSHVRMVESNKNESLNKSEIENLNLKIDSLTNENLSLKIEIDRISKSIVDIKESIDKSYHSISEIDDSTKNCPIRGDQIDNLCNATEIISLDSDEEFDFGNEKCLGELDWKIDKLSQRPV------NSWKYSRPFYSQEFGYKMCLSLNFGENAVNVYFHLLRGENDDQLSWPFKCVVTIAAIDQPNGQI 370
BLAST of TRAF-4 vs. Planmine SMEST
Match: SMESG000015001.1 (SMESG000015001.1) HSP 1 Score: 147.902 bits (372), Expect = 9.799e-40 Identity = 115/404 (28.47%), Postives = 189/404 (46.78%), Query Frame = 2 Query: 77 FESIWFLINQYDFKFDASRYSDLICGMCGKLLSEAMQSSCSCKFCRRCIEIHCENNSVTCPGLSELCKSTVLDLDEDVIVDHTTNKRISLLKVKCPFDQCPFEDKLIHMESHVKMCDKKPKS-----RQQSXXXXXXXXXXXXXXXXXVIHLKLLIESIDNLRNENKMLSNEIISLKETQKLSQISMEKFRKQIEKMNEK--------------MDQIIENQKTLSVKFEENFNEKQSDQQSRMKTNSTGKRERIKKVPKSQ-----NILGELLWKIDNFSATKKSLMFGDDRWLDSAEFCTSPSRYKMQLRMWIGEPNVDILIKMISNEDDKYIQWPIKVEVNIGLLNPENGNLKVNETKIIEYQTASFTSKAYFHFHNSSVNKVVVKHDS-------LVVKC 1195 F S+W ++ + F+FD SDLIC +C L+ +A S C C+FC CIE + N+ CPG + C + ++++ DH N RIS VKCP + C F D+L +ESH+KMC+K S + + N E+ + + H KLLI+ I+NLRNE + + I ++ + S+ + K +K+I + ++ +D++ +T+ KF+ + Q+ + +K G R+ + K+ Q G L WKI+N S +L+F S F + YKM L + + I ++ E D + WP + V I ++PENGN+ ++T T+ + N+ +N + V DS L VKC Sbjct: 2 FASLWKVMKENKFEFDDEISSDLICKICKCLIIKACNSPCGCRFCFDCIEHYLNGNNKFCPGAARFCHLQTIHFEKNISEDHPANFRISETVVKCPRENCQFTDELGMIESHMKMCNKGRISCPFLGIGCGKNEIINEEMQAHLNEDNYYHTKLLIDLINNLRNEMESMKLNICEMERKEIESKGEIAKLKKEILAVKDENRFFRSGNEANVKLIDEMRRQIETIQTKFQPQIEDNQNYDKENIK---AGLRKTVSKIQGIQAKFEIENFGILEWKIENLSQKFDTLLF-------SEPFYSGRPGYKMCLSINVKSNENYINFHLMVGETDTKLTWPFRSAVTIDAIDPENGNILRSKTMKYSDNTSHSVWLQPVNERNNGINIITVPSDSRAIINDKLTVKC 395
BLAST of TRAF-4 vs. Planmine SMEST
Match: SMESG000072893.1 (SMESG000072893.1) HSP 1 Score: 145.206 bits (365), Expect = 1.323e-38 Identity = 104/413 (25.18%), Postives = 194/413 (46.97%), Query Frame = 2 Query: 77 FESIWFLINQYDFKFDASRYSDLICGMCGKLLSEAMQSSCSCKFCRRCIEIHCENNSVTCPGLSELCKSTVLDLDEDVIVDHTTNKRISLLKVKCPFDQCPFEDKLIHMESHVKMCDKKP-----KSRQQSXXXXXXXXXXXXXXXXXVIHLKLLIESIDNLRNENKMLSNEIISLKETQKLSQISMEKFRK-------QIEKMNEKMDQIIENQKTLSVKFEENFNEKQSDQQSRMKTNSTGKRERIKKVPKSQNIL------------GELLWKIDNFSATKKSLMFGDDRWLDSAEFCTSPSRYKMQLRMWIGEPNVDIL---IKMISNEDDKYIQWPIKVEVNIGLLNPENGNLKVNETKIIEYQTA--------SFTSKAYFHFHNSSVNKVVVKHDSLVVKCLAKDL 1210 F ++W ++ + F+ D +S+L C +C L+ +A + C C+FC CIE + E + CPG +E C+ +++ D DH N RIS + VKCP C + +LI ME H+ CDK+P + + + + E+ + H KLLI ++++R+EN L I ++ + + R +I+ E ++QI +T+ +K+++ ++ + + + + + + + +I + ++ G W+ID+ S K+ + S F + P YKM L ++ PN D++ ++ E D ++WP K V + ++NPENGN +K I+Y + + Y ++ S+N K+D L++KC+ K L Sbjct: 2 FTNLWKIMRENKFESDNLFHSELKCSICKCLMIKACHAPCGCRFCSDCIEQYLEGSDKFCPGEAEYCQGQMINFINDATEDHPINLRISKVIVKCPRQNCEIKTELIKMEEHMNNCDKRPISCPFNTIGCAINEVASDEMNAHLNETNYCHSKLLIGRMESMRSENMELRQRISHMEMNEACNTAERNDIRYENRSMKIEIDANAEVINQIRMQIETIEIKYQKQISDWKQNCEQQQREENKNFQLQIDQCANEMRLIQTKLGNKDFIKSGIFEWEIDSLSQQKRR------EHIYSKPFHSGPYDYKMCLSIYFDVPNRDLIYFDFYLMRGEFDHKLEWPFKYAVTVDVINPENGNSYC--SKSIKYSDCPDHAGWRKPSSDRNYSIYYYYSLNYAAPKNDKLLIKCIIKKL 406 The following BLAST results are available for this feature:
BLAST of TRAF-4 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 2
BLAST of TRAF-4 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of TRAF-4 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 1
BLAST of TRAF-4 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 3
BLAST of TRAF-4 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 1
BLAST of TRAF-4 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 1
BLAST of TRAF-4 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of TRAF-4 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of TRAF-4 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 3
BLAST of TRAF-4 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 1
BLAST of TRAF-4 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of TRAF-4 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 4
BLAST of TRAF-4 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 1
BLAST of TRAF-4 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30032067 ID=SMED30032067|Name=TRAF-4|organism=Schmidtea mediterranea sexual|type=transcript|length=1416bpback to top protein sequence of SMED30032067-orf-1 >SMED30032067-orf-1 ID=SMED30032067-orf-1|Name=SMED30032067-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=390bp MSAERFESIWFLINQYDFKFDASRYSDLICGMCGKLLSEAMQSSCSCKFCback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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