Protein CBG14354

Overview


Name	Protein CBG14354
Smed ID	SMED30032048
Length (bp)	1013

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Protein CBG14354 (SMED30032048) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Protein CBG14354 (SMED30032048) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30032048

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 5

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
epidermis	SMED30032048	SMESG000040050.1	dd_Smed_v4_9805_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30032048	SMESG000040050.1	Contig27406	newmark_ests	PMID:29674431 Fincher et al., 2018
Category 4 cell	SMED30032048	SMESG000040050.1	dd_Smed_v4_14769_0_1	dd_Smed_v4	PMID:28292427 Wurtzel et al., 2017
epidermis	SMED30032048	SMESG000040050.1	dd_Smed_v4_9805_0_1	dd_Smed_v4	PMID:28292427 Wurtzel et al., 2017
Category 4 cell	SMED30032048	SMESG000040050.1	dd_Smed_v4_9805_0_1	dd_Smed_v4	PMID:28292427 Wurtzel et al., 2017

Note: Hover over icons to view figure legend

Homology

[Close]

BLAST of Protein CBG14354 vs. Ensembl Celegans
Match: ZK470.1 (pep chromosome:WBcel235:X:4164302:4166138:1 gene:WBGene00022744.1 transcript:ZK470.1.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ZK470.1)

HSP 1 Score: 58.151 bits (139), Expect = 6.447e-10
Identity = 34/107 (31.78%), Postives = 61/107 (57.01%), Query Frame = 3

Query:  480 HNYYRIID-KVFIGYSWKIVLIKLFFDITVNIPLTLSTYITARGLWERRTFKSIFKDFKCLMKTLYSVELSFWIPYQIFNFRFVNPQYRILCENLGNLIYQNLFSYM 797
            H +YR++D + FIG     VL KL +D T  IP     ++T   ++E ++  + F +++  M  ++ V+ + W P Q+ NF F+ P  R++  NL +L+Y  + SY+
Sbjct:   64 HCFYRVLDTRKFIGSRNCKVLKKLAWD-TAFIPYFSCIFMTVGSIYEGKSLSAAFAEYRRKMWHIWKVDFTLWPPAQLINFYFMPPALRVVYVNLVSLLYNCIMSYI 169

[Close]

BLAST of Protein CBG14354 vs. Ensembl Fly
Match: CG5906 (gene:FBgn0036217 transcript:FBtr0076071)

HSP 1 Score: 61.6178 bits (148), Expect = 5.979e-11
Identity = 35/129 (27.13%), Postives = 64/129 (49.61%), Query Frame = 3

Query:  417 QWNKDRTFLHTRSLACMGCVSHNYYRIIDKVFIGYSWKIVLIKLFFDITVNIPLTLSTYITARGLWERRTFKSIFKDFKCLMKTLYSVELSFWIPYQIFNFRFVNPQYRILCEN---LGNLIYQNLFSY 794
             WN+ RT     S   +G V H +Y+ +D +F   ++K+V++K+  D  +  P  ++ +     + E  T++ + ++ +     LY+ E + W   Q  NF  + PQYR+  +N   LG  IY +   Y
Sbjct:   58 DWNRTRTIRMGISGLTVGLVCHYWYQHLDYLFPKRTYKVVVVKILLDQFICSPFYIAVFFLTMAILEDNTWEELEQEIREKALVLYAAEWTVWPLAQFINFLLIKPQYRVFYDNTISLGYDIYTSQVKY 186

[Close]

BLAST of Protein CBG14354 vs. Ensembl Fly
Match: CG1662 (gene:FBgn0030481 transcript:FBtr0342624)

HSP 1 Score: 60.4622 bits (145), Expect = 2.463e-10
Identity = 35/124 (28.23%), Postives = 63/124 (50.81%), Query Frame = 3

Query:  432 RTFLHTRSLACMGCVSHNYYRIIDKVFIGYSWKIVLIKLFFDITVNIPLTLSTYITARGLWERRTFKSIFKDFKCLMKTLYSVELSFWIPYQIFNFRFVNPQYRILCENLGNLIYQNLFSYMYH 803
            RT     S   +G + H +Y+++DK   G + ++V  K+  D  +  P+ +S +    GL E++T   ++++ K     LY+ E + W   Q  NF ++   YRI  +N+ +L Y  L S + H
Sbjct:  111 RTAHMAISGVTVGVICHYWYKMLDKRMPGRTMRVVAKKIVLDQLICSPIYISAFFVTLGLLEQKTKHEVWEEIKEKAWKLYAAEWTVWPVAQFVNFYWIPTHYRIFYDNIISLGYDVLTSKVKH 234

[Close]

BLAST of Protein CBG14354 vs. Ensembl Fly
Match: CG1662 (gene:FBgn0030481 transcript:FBtr0073776)

HSP 1 Score: 60.4622 bits (145), Expect = 2.463e-10
Identity = 35/124 (28.23%), Postives = 63/124 (50.81%), Query Frame = 3

Query:  432 RTFLHTRSLACMGCVSHNYYRIIDKVFIGYSWKIVLIKLFFDITVNIPLTLSTYITARGLWERRTFKSIFKDFKCLMKTLYSVELSFWIPYQIFNFRFVNPQYRILCENLGNLIYQNLFSYMYH 803
            RT     S   +G + H +Y+++DK   G + ++V  K+  D  +  P+ +S +    GL E++T   ++++ K     LY+ E + W   Q  NF ++   YRI  +N+ +L Y  L S + H
Sbjct:  111 RTAHMAISGVTVGVICHYWYKMLDKRMPGRTMRVVAKKIVLDQLICSPIYISAFFVTLGLLEQKTKHEVWEEIKEKAWKLYAAEWTVWPVAQFVNFYWIPTHYRIFYDNIISLGYDVLTSKVKH 234

[Close]

BLAST of Protein CBG14354 vs. Ensembl Fly
Match: CG32263 (gene:FBgn0052263 transcript:FBtr0073183)

HSP 1 Score: 51.2174 bits (121), Expect = 5.983e-9
Identity = 33/132 (25.00%), Postives = 61/132 (46.21%), Query Frame = 3

Query:  402 ENAEFQWNKDRTFLHTRSLACMGCVSHNYYRIIDKVFIGYSWKIVLIKLFFDITVNIPLTLSTYITARGLWERRTFKSIFKDFKCLMKTLYSVELSFWIPYQIFNFRFVNPQYRILCENLGNLIYQNLFSYM 797
            E   F +++    + T S+  +G + H +Y ++D V  G S   VL K+  D  +  P+ +  +     L   ++F     +        + ++  FW   Q  NFRF+N  YR++  N+ N +Y  L S++
Sbjct:   68 EKKAFDYSRSGCMMITGSV--IGPIQHGFYLLLDGVLPGTSGWGVLHKILVDQLIMSPIYIFLFFYVSSLLGGKSFVECNSELSEKFLYTWMLDCCFWPGLQYLNFRFLNSLYRVVFVNVANCVYVVLLSHI 197

HSP 2 Score: 27.7202 bits (60), Expect = 5.983e-9
Identity = 14/38 (36.84%), Postives = 21/38 (55.26%), Query Frame = 1

Query:  169 FKQQAYGKYLFFTNMGTYFLIGGTADSIAQRIEKLSEE 282
            F  + +GKYL  TN     L+    D+IAQ+ E+  E+
Sbjct:   32 FWTKLFGKYLLLTNTIGSGLLLAIGDAIAQQYERFGEK 69

[Close]

BLAST of Protein CBG14354 vs. Ensembl Fly
Match: CG32262 (gene:FBgn0052262 transcript:FBtr0073184)

HSP 1 Score: 48.521 bits (114), Expect = 3.622e-6
Identity = 31/129 (24.03%), Postives = 59/129 (45.74%), Query Frame = 3

Query:  417 QWNKDRTFLHTRSLACMGCVSHNYYRIIDKVFIGYSWKIVLIKLFFDITVNIPLTLSTYITARGLWERRTFKSIFKDFKCLMKTLYSVELSFWIPYQIFNFRFVNPQYRILCENLGNLIYQNLFSYMYH 803
            +++ DR +    + A  G + H  Y  +D+V    + K +  K+  D  V  P  +  +  +    ER+T  +  ++       +Y ++   W   Q  NFR+++ +YR+   N+   +Y  L SYM H
Sbjct:  110 RFDTDRMYRMFVAGALQGPLHHYVYNWMDRVMPARTLKNIFKKILIDQLVMSPACIVIFFYSLCYLERQTLDATNQELISKFPYVYMLDWMTWPAAQYLNFRYLDTKYRVTFVNVCTAVYNVLMSYMKH 238

[Close]

BLAST of Protein CBG14354 vs. Ensembl Zebrafish
Match: mpv17l2 (MPV17 mitochondrial membrane protein-like 2 [Source:NCBI gene;Acc:436840])

HSP 1 Score: 56.9954 bits (136), Expect = 2.945e-9
Identity = 35/118 (29.66%), Postives = 55/118 (46.61%), Query Frame = 3

Query:  453 SLAC-MGCVSHNYYRIIDKVFIGYSWKIVLIKLFFDITVNIPLTLSTYITARGLWERRTFKSIFKDFKCLMKTLYSVELSFWIPYQIFNFRFVNPQYRILCENLGNLIYQNLFSYMYH 803
            ++ C MG   H +Y+ +DK FIG     V  K+  D  V  P   + Y    G+ E  TF    ++F+      Y  +   W   Q+ NF F+ P++R+L  N+  L +    SY+ H
Sbjct:   68 AVGCSMGPFMHYWYQWLDKYFIGNGINNVCKKVLVDQLVASPTLGAWYFLGMGMMEGHTFIEAQQEFRDKFWEFYKADWCVWPAAQMINFYFLPPKFRVLYVNIVTLGWDTYLSYLKH 185

[Close]

Query:  453 SLAC-MGCVSHNYYRIIDKVFIGYSWKIVLIKLFFDITVNIPLTLSTYITARGLWERRTFKSIFKDFKCLMKTLYSVELSFWIPYQIFNFRFVNPQYRILCENLGNLIYQNLFSYMYH 803
            ++ C MG   H +Y+ +DK FIG     V  K+  D  V  P   + Y    G+ E  TF    ++F+      Y  +   W   Q+ NF F+ P++R+L  N+  L +    SY+ H
Sbjct:   68 AVGCSMGPFMHYWYQWLDKYFIGNGINNVCKKVLVDQLVASPTLGAWYFLGMGMMEGHTFIEAQQEFRDKFWEFYKADWCVWPAAQMINFYFLPPKFRVLYVNIVTLGWDTYLSYLKH 185

[Close]

BLAST of Protein CBG14354 vs. Ensembl Xenopus
Match: mpv17l2 (MPV17 mitochondrial membrane protein-like 2 [Source:NCBI gene;Acc:448319])

HSP 1 Score: 59.3066 bits (142), Expect = 9.636e-10
Identity = 36/142 (25.35%), Postives = 67/142 (47.18%), Query Frame = 3

Query:  423 NKDRTFLHTRSLACMGC----VSHNYYRIIDKVFIGYSWKIVLIKLFFDITVNIPLTLSTYITARGLWERRTFKSIFKDFKCLMKTLYSVELSFWIPYQIFNFRFVNPQYRILCENLGNLIYQNLFSYMYHILRKTYRREEC 836
             + R +L T  +  +GC    + H +Y  +D+ F G    +V+ K+  D  V  P+    Y    G  E +  +  +++F+      Y  + + W   Q+ NF F++P+YR++  N+  + +    SY+ H      R+EEC
Sbjct:   54 ERKRDWLRTGRMFAIGCSMGPLMHFWYSWLDRSFPGRGITVVMRKVLIDQLVASPVLGLWYFLGMGSMEGQKLEKSWQEFREKFWEFYKADWTVWPAAQMINFYFLSPKYRVIYINVITVGWDTYLSYLKH------RKEEC 189

[Close]

BLAST of Protein CBG14354 vs. Ensembl Xenopus
Match: ENSXETT00000020072.1 (mpv17-like protein 2 [Source:NCBI gene;Acc:100497159])

HSP 1 Score: 56.6102 bits (135), Expect = 7.177e-9
Identity = 37/131 (28.24%), Postives = 63/131 (48.09%), Query Frame = 3

Query:  423 NKDRTFLHTRSL----ACMGCVSHNYYRIIDKVFIGYSWKIVLIKLFFDITVNIPLTLSTYITARGLWERRTFKSIFKDFKCLMKTLYSVELSFWIPYQIFNFRFVNPQYRILCENLGNLIYQNLFSYMYH 803
             K R +L T  +     C+G V H +Y  +D++  G + ++VL K+  +  V  P+  + +    GL E  + +  + +FK     +Y VE   W P QI NF F+  +YR++  N   L +     Y+ H
Sbjct:   54 EKKRDWLRTGRMFAIGCCLGPVDHYWYVFLDRILPGATVRVVLKKVLVEQIVASPILGTMFFMGTGLMEGHSVEESWVEFKGKFWEMYKVEWCVWPPAQIINFYFLPTKYRVMYVNFVTLAWDIYLCYLKH 184

[Close]

BLAST of Protein CBG14354 vs. UniProt/SwissProt
Match: sp|Q6DIY8|M17L2_XENTR (Mpv17-like protein 2 OS=Xenopus tropicalis OX=8364 GN=mpv17l2 PE=2 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 5.105e-9
Identity = 36/142 (25.35%), Postives = 67/142 (47.18%), Query Frame = 3

Query:  423 NKDRTFLHTRSLACMGC----VSHNYYRIIDKVFIGYSWKIVLIKLFFDITVNIPLTLSTYITARGLWERRTFKSIFKDFKCLMKTLYSVELSFWIPYQIFNFRFVNPQYRILCENLGNLIYQNLFSYMYHILRKTYRREEC 836
             + R +L T  +  +GC    + H +Y  +D+ F G    +V+ K+  D  V  P+    Y    G  E +  +  +++F+      Y  + + W   Q+ NF F++P+YR++  N+  + +    SY+ H      R+EEC
Sbjct:   54 ERKRDWLRTGRMFAIGCSMGPLMHFWYSWLDRSFPGRGITVVMRKVLIDQLVASPVLGLWYFLGMGSMEGQKLEKSWQEFREKFWEFYKADWTVWPAAQMINFYFLSPKYRVIYINVITVGWDTYLSYLKH------RKEEC 189

[Close]

BLAST of Protein CBG14354 vs. UniProt/SwissProt
Match: sp|Q6DGV7|M17L2_DANRE (Mpv17-like protein 2 OS=Danio rerio OX=7955 GN=mpv17l2 PE=2 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 2.223e-8
Identity = 35/118 (29.66%), Postives = 55/118 (46.61%), Query Frame = 3

Query:  453 SLAC-MGCVSHNYYRIIDKVFIGYSWKIVLIKLFFDITVNIPLTLSTYITARGLWERRTFKSIFKDFKCLMKTLYSVELSFWIPYQIFNFRFVNPQYRILCENLGNLIYQNLFSYMYH 803
            ++ C MG   H +Y+ +DK FIG     V  K+  D  V  P   + Y    G+ E  TF    ++F+      Y  +   W   Q+ NF F+ P++R+L  N+  L +    SY+ H
Sbjct:   68 AVGCSMGPFMHYWYQWLDKYFIGNGINNVCKKVLVDQLVASPTLGAWYFLGMGMMEGHTFIEAQQEFRDKFWEFYKADWCVWPAAQMINFYFLPPKFRVLYVNIVTLGWDTYLSYLKH 185

[Close]

BLAST of Protein CBG14354 vs. TrEMBL
Match: A0A0L8FUV3 (Uncharacterized protein OS=Octopus bimaculoides OX=37653 GN=OCBIM_22007939mg PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.137e-13
Identity = 41/126 (32.54%), Postives = 71/126 (56.35%), Query Frame = 3

Query:  420 WNKDRTFLHTRSLACMGCVSHNYYRIIDKVFIGYSWKIVLIKLFFDITVNIPLTLSTYITARGLWERRTFKSIFKDFKCLMKTLYSVELSFWIPYQIFNFRFVNPQYRILCENLGNLIYQNLFSYM 797
            WNKDRT   + +   +G  SH +Y +ID +F G S ++V  KL FD T+  P+ +  ++++ G+ E  +F  +  ++K   KTL   E   W P Q+ NF F+  ++R+L +N  +  +   +SY+
Sbjct:   60 WNKDRTLHISITGLILGPPSHYWYHLIDYLFPGSSVRVVAKKLLFDQTIGTPIGIFLFLSSLGILENSSFDKMLTEYKNCGKTLLLSEWLIWPPVQVINFAFIPLKFRVLFDNSVSFGFDIYYSYI 185

[Close]

BLAST of Protein CBG14354 vs. TrEMBL
Match: E9IVG5 (Uncharacterized protein (Fragment) OS=Solenopsis invicta OX=13686 GN=SINV_06017 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.432e-13
Identity = 49/148 (33.11%), Postives = 72/148 (48.65%), Query Frame = 3

Query:  366 ILNRPTDNAFITENAEFQWNKDRTFLHTRSLACMGCVS----HNYYRIIDKVFIGYSWKIVLIKLFFDITVNIPLTLSTYITARGLWERRTFKSIFKDFKCLMKTLYSVELSFWIPYQIFNFRFVNPQYRILCENLGNLIYQNLFSYM 797
            I   P ++  +TE     +  D  ++ TR++  +G +     H +Y I+DKVF G S K VL K F D +V  P  L+ +    G+ E R  + I K+ K      + V+  FW P Q  NF FV   YR+L  N   ++Y    SYM
Sbjct:   52 IAASPEEDEEVTETIS-SYGHD--YMRTRNMTVVGLLQGPFHHWFYTILDKVFPGRSAKSVLKKTFLDQSVASPTCLTIFFVGLGILESRKIEEIRKELKLKFGETWKVDCCFWPPTQCINFLFVPLHYRVLYTNAMTMVYDIFLSYM 196

[Close]

BLAST of Protein CBG14354 vs. TrEMBL
Match: N6UED5 (Uncharacterized protein (Fragment) OS=Dendroctonus ponderosae OX=77166 GN=109535409 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.635e-13
Identity = 43/129 (33.33%), Postives = 66/129 (51.16%), Query Frame = 3

Query:  417 QWNKDRTFLHTRSLACMGCVSHNYYRIIDKVFIGYSWKIVLIKLFFDITVNIPLTLSTYITARGLWERRTFKSIFKDFKCLMKTLYSVELSFWIPYQIFNFRFVNPQYRILCENLGNLIYQNLFSYMYH 803
            +W+K RT   T S   +G V H +Y  +D+   GY+ +IVL K+  D  V  PL++ST+     + E  T     K+ +     LY+ E   W P Q  NF  ++ +YR+L +NL +L Y    S + H
Sbjct:   61 EWDKVRTRNMTMSGTTVGFVCHYWYSHLDRTIPGYTVRIVLKKIVVDQLVGSPLSISTFFGTLAVLEGSTIDEFIKEVQTKAWRLYAAEWMIWPPCQFLNFYVLSTKYRVLFDNLVSLGYDIFTSRVKH 189

HSP 2 Score: 32.3426 bits (72), Expect = 1.635e-13
Identity = 21/64 (32.81%), Postives = 34/64 (53.12%), Query Frame = 1

Query:  124 LRSSIMGKFLKSLNFFKQQAYGKYLFFTNMGTYFLIGGTADSIAQRIEKLSEESIERFELPRKN 315
            LR+ I  K +K    F++    K+L +TN+G    + G  D I Q+ E +SEE  E  ++  +N
Sbjct:    9 LRTIIAPKVVK---VFQKMFSDKFLLYTNVGLSTSLSGLGDLIEQKYELMSEELTEWDKVRTRN 69

[Close]

BLAST of Protein CBG14354 vs. TrEMBL
Match: J3JYJ6 (Uncharacterized protein OS=Dendroctonus ponderosae OX=77166 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.717e-13
Identity = 43/129 (33.33%), Postives = 66/129 (51.16%), Query Frame = 3

Query:  417 QWNKDRTFLHTRSLACMGCVSHNYYRIIDKVFIGYSWKIVLIKLFFDITVNIPLTLSTYITARGLWERRTFKSIFKDFKCLMKTLYSVELSFWIPYQIFNFRFVNPQYRILCENLGNLIYQNLFSYMYH 803
            +W+K RT   T S   +G V H +Y  +D+   GY+ +IVL K+  D  V  PL++ST+     + E  T     K+ +     LY+ E   W P Q  NF  ++ +YR+L +NL +L Y    S + H
Sbjct:   61 EWDKVRTRNMTISGTTVGFVCHYWYSHLDRTIPGYTVRIVLKKIVVDQLVGSPLSISTFFGTLAVLEGSTIDEFIKEVQTKAWRLYAAEWMIWPPCQFLNFYVLSTKYRVLFDNLVSLGYDIFTSRVKH 189

HSP 2 Score: 32.3426 bits (72), Expect = 2.717e-13
Identity = 21/64 (32.81%), Postives = 34/64 (53.12%), Query Frame = 1

Query:  124 LRSSIMGKFLKSLNFFKQQAYGKYLFFTNMGTYFLIGGTADSIAQRIEKLSEESIERFELPRKN 315
            LR+ I  K +K    F++    K+L +TN+G    + G  D I Q+ E +SEE  E  ++  +N
Sbjct:    9 LRTIIAPKVVK---VFQKMFSDKFLLYTNVGLSTSLSGLGDLIEQKYELMSEELTEWDKVRTRN 69

[Close]

BLAST of Protein CBG14354 vs. TrEMBL
Match: A0A0L8FU14 (Uncharacterized protein OS=Octopus bimaculoides OX=37653 GN=OCBIM_22007939mg PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.917e-13
Identity = 41/126 (32.54%), Postives = 71/126 (56.35%), Query Frame = 3

Query:  420 WNKDRTFLHTRSLACMGCVSHNYYRIIDKVFIGYSWKIVLIKLFFDITVNIPLTLSTYITARGLWERRTFKSIFKDFKCLMKTLYSVELSFWIPYQIFNFRFVNPQYRILCENLGNLIYQNLFSYM 797
            WNKDRT   + +   +G  SH +Y +ID +F G S ++V  KL FD T+  P+ +  ++++ G+ E  +F  +  ++K   KTL   E   W P Q+ NF F+  ++R+L +N  +  +   +SY+
Sbjct:  111 WNKDRTLHISITGLILGPPSHYWYHLIDYLFPGSSVRVVAKKLLFDQTIGTPIGIFLFLSSLGILENSSFDKMLTEYKNCGKTLLLSEWLIWPPVQVINFAFIPLKFRVLFDNSVSFGFDIYYSYI 236

[Close]

BLAST of Protein CBG14354 vs. Ensembl Cavefish
Match: mpv17l2 (MPV17 mitochondrial inner membrane protein like 2 [Source:NCBI gene;Acc:103046905])

HSP 1 Score: 49.6766 bits (117), Expect = 1.092e-6
Identity = 35/133 (26.32%), Postives = 51/133 (38.35%), Query Frame = 3

Query:  405 NAEFQWNKDRTFLHTRSLACMGCVSHNYYRIIDKVFIGYSWKIVLIKLFFDITVNIPLTLSTYITARGLWERRTFKSIFKDFKCLMKTLYSVELSFWIPYQIFNFRFVNPQYRILCENLGNLIYQNLFSYMYH 803
              E  W   RT         MG   H +Y  +DK + G   K V  K+  D  +  PL  + Y    G+ E         +FK      Y  +   W   Q+ NF F+  ++R+L  N   L +    SY+ H
Sbjct:   52 TPEKSWEWQRTGRMAAVGCSMGPFLHFWYEWLDKAYAGRMVKTVAKKVLIDQLIASPLLGAWYFIGMGIMEGHGAVKGCTEFKEKFWEFYKADWCVWPTAQMINFYFLPAKFRVLYVNTITLGWDTYLSYLKH 184

[Close]

BLAST of Protein CBG14354 vs. Ensembl Sea Lamprey
Match: si:ch211-120k19.1 (si:ch211-120k19.1 [Source:ZFIN;Acc:ZDB-GENE-100922-282])

HSP 1 Score: 46.595 bits (109), Expect = 1.905e-6
Identity = 29/109 (26.61%), Postives = 47/109 (43.12%), Query Frame = 3

Query:  432 RTFLHTRSLACMGCVSHN-----YYRIIDKVFIGYSWKIVLIKLFFDITVNIPLTLSTYITARGLWERRTFKSIFKDFKCLMKTLYSVELSFWIPYQIFNFRFVNPQYR 743
            R   H    A +G   H      + R +++   G + + V++K+  D TV  P+T+S + T   L E +    I+KD +      Y   + +W   Q  NF  V P  R
Sbjct:   37 RPARHGLRAALLGLTFHGNFNYVWLRGLERAIPGSAARAVVVKVLADQTVAGPITISAFFTGMSLLEGK--PDIYKDLRQKFWPTYKTGVVYWSAMQTINFTLVPPYAR 143

[Close]

BLAST of Protein CBG14354 vs. Ensembl Medaka
Match: mpv17l2 (MPV17 mitochondrial inner membrane protein like 2 [Source:NCBI gene;Acc:101164222])

HSP 1 Score: 50.8322 bits (120), Expect = 3.141e-7
Identity = 32/131 (24.43%), Postives = 60/131 (45.80%), Query Frame = 3

Query:  423 NKDRTFLHTRSLACMGC----VSHNYYRIIDKVFIGYSWKIVLIKLFFDITVNIPLTLSTYITARGLWERRTFKSIFKDFKCLMKTLYSVELSFWIPYQIFNFRFVNPQYRILCENLGNLIYQNLFSYMYH 803
            ++ R +  T  +  +GC    + H +Y  +D+V++G +   ++ K+  D  V  P     Y     L E  T    + +F+      Y V+   W   Q+ NF F++P++R++  N   L +    SY+ H
Sbjct:   55 DRVRDWARTGRMFVVGCSLGPLLHYWYLWLDRVYVGKALNTLIKKVLVDQLVASPTLGLWYFLGMDLLEGHTLSQGWAEFRDKFWEFYKVDWCVWPAAQMINFYFLSPKFRVVYINFITLGWDTYLSYLKH 185

[Close]

BLAST of Protein CBG14354 vs. Ensembl Medaka
Match: mpv17l2 (MPV17 mitochondrial inner membrane protein like 2 [Source:NCBI gene;Acc:101164222])

HSP 1 Score: 49.6766 bits (117), Expect = 9.803e-7
Identity = 32/131 (24.43%), Postives = 60/131 (45.80%), Query Frame = 3

Query:  423 NKDRTFLHTRSLACMGC----VSHNYYRIIDKVFIGYSWKIVLIKLFFDITVNIPLTLSTYITARGLWERRTFKSIFKDFKCLMKTLYSVELSFWIPYQIFNFRFVNPQYRILCENLGNLIYQNLFSYMYH 803
            ++ R +  T  +  +GC    + H +Y  +D+V++G +   ++ K+  D  V  P     Y     L E  T    + +F+      Y V+   W   Q+ NF F++P++R++  N   L +    SY+ H
Sbjct:   55 DRVRDWARTGRMFVVGCSLGPLLHYWYLWLDRVYVGKALNTLIKKVLVDQLVASPTLGLWYFLGMDLLEGHTLSQGWAEFRDKFWEFYKVDWCVWPAAQMINFYFLSPKFRVVYINFITLGWDTYLSYLKH 185

[Close]

BLAST of Protein CBG14354 vs. Planmine SMEST
Match: SMESG000040050.1 (SMESG000040050.1)

HSP 1 Score: 307.76 bits (787), Expect = 8.125e-109
Identity = 147/149 (98.66%), Postives = 148/149 (99.33%), Query Frame = 3

Query:  396 ITENAEFQWNKDRTFLHTRSLACMGCVSHNYYRIIDKVFIGYSWKIVLIKLFFDITVNIPLTLSTYITARGLWERRTFKSIFKDFKCLMKTLYSVELSFWIPYQIFNFRFVNPQYRILCENLGNLIYQNLFSYMYHILRKTYRREECQF 842
            I +NAEFQWNKDRTFLHTRSLACMGCVSHNYYRIIDKVFIGYSWKIVLIKLFFDITVNIPLTLSTYITARGLWERRTFKSIFKDFKCLMKTLYSVELSFWIPYQIFNFRFVNPQYRILCENLGNLIYQNLFSYMYHILRKTYRREECQF
Sbjct:   50 IEKNAEFQWNKDRTFLHTRSLACMGCVSHNYYRIIDKVFIGYSWKIVLIKLFFDITVNIPLTLSTYITARGLWERRTFKSIFKDFKCLMKTLYSVELSFWIPYQIFNFRFVNPQYRILCENLGNLIYQNLFSYMYHILRKTYRREECQF 198

HSP 2 Score: 105.531 bits (262), Expect = 8.125e-109
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 1

Query:  139 MGKFLKSLNFFKQQAYGKYLFFTNMGTYFLIGGTADSIAQRIEKLSEESIER 294
            MGKFLKSLNFFKQQAYGKYLFFTNMGTYFLIGGTADSIAQRIEKLSEESIE+
Sbjct:    1 MGKFLKSLNFFKQQAYGKYLFFTNMGTYFLIGGTADSIAQRIEKLSEESIEK 52

[Close]

BLAST of Protein CBG14354 vs. Planmine SMEST
Match: SMESG000040050.1 (SMESG000040050.1)

HSP 1 Score: 306.99 bits (785), Expect = 1.038e-105
Identity = 147/149 (98.66%), Postives = 148/149 (99.33%), Query Frame = 3

Query:  396 ITENAEFQWNKDRTFLHTRSLACMGCVSHNYYRIIDKVFIGYSWKIVLIKLFFDITVNIPLTLSTYITARGLWERRTFKSIFKDFKCLMKTLYSVELSFWIPYQIFNFRFVNPQYRILCENLGNLIYQNLFSYMYHILRKTYRREECQF 842
            I +NAEFQWNKDRTFLHTRSLACMGCVSHNYYRIIDKVFIGYSWKIVLIKLFFDITVNIPLTLSTYITARGLWERRTFKSIFKDFKCLMKTLYSVELSFWIPYQIFNFRFVNPQYRILCENLGNLIYQNLFSYMYHILRKTYRREECQF
Sbjct:   26 IEKNAEFQWNKDRTFLHTRSLACMGCVSHNYYRIIDKVFIGYSWKIVLIKLFFDITVNIPLTLSTYITARGLWERRTFKSIFKDFKCLMKTLYSVELSFWIPYQIFNFRFVNPQYRILCENLGNLIYQNLFSYMYHILRKTYRREECQF 174

HSP 2 Score: 57.3806 bits (137), Expect = 9.519e-10
Identity = 27/28 (96.43%), Postives = 28/28 (100.00%), Query Frame = 1

Query:  211 MGTYFLIGGTADSIAQRIEKLSEESIER 294
            MGTYFLIGGTADSIAQRIEKLSEESIE+
Sbjct:    1 MGTYFLIGGTADSIAQRIEKLSEESIEK 28

[Close]

BLAST of Protein CBG14354 vs. Planmine SMEST
Match: SMESG000040050.1 (SMESG000040050.1)

HSP 1 Score: 259.225 bits (661), Expect = 1.341e-87
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 3

Query:  465 MGCVSHNYYRIIDKVFIGYSWKIVLIKLFFDITVNIPLTLSTYITARGLWERRTFKSIFKDFKCLMKTLYSVELSFWIPYQIFNFRFVNPQYRILCENLGNLIYQNLFSYMYHILRKTYRREECQF 842
            MGCVSHNYYRIIDKVFIGYSWKIVLIKLFFDITVNIPLTLSTYITARGLWERRTFKSIFKDFKCLMKTLYSVELSFWIPYQIFNFRFVNPQYRILCENLGNLIYQNLFSYMYHILRKTYRREECQF
Sbjct:    1 MGCVSHNYYRIIDKVFIGYSWKIVLIKLFFDITVNIPLTLSTYITARGLWERRTFKSIFKDFKCLMKTLYSVELSFWIPYQIFNFRFVNPQYRILCENLGNLIYQNLFSYMYHILRKTYRREECQF 126

[Close]

BLAST of Protein CBG14354 vs. Planmine SMEST
Match: SMESG000040050.1 (SMESG000040050.1)

HSP 1 Score: 103.99 bits (258), Expect = 1.358e-27
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1

Query:  139 MGKFLKSLNFFKQQAYGKYLFFTNMGTYFLIGGTADSIAQRIEKLSEESIE 291
            MGKFLKSLNFFKQQAYGKYLFFTNMGTYFLIGGTADSIAQRIEKLSEESIE
Sbjct:    1 MGKFLKSLNFFKQQAYGKYLFFTNMGTYFLIGGTADSIAQRIEKLSEESIE 51

[Close]

BLAST of Protein CBG14354 vs. Planmine SMEST
Match: SMESG000062744.1 (SMESG000062744.1)

HSP 1 Score: 100.523 bits (249), Expect = 6.213e-25
Identity = 45/135 (33.33%), Postives = 78/135 (57.78%), Query Frame = 3

Query:  402 ENAEFQWNKDRTFLHTRSLACMGCVSHNYYRIIDKVFIGYSWKIVLIKLFFDITVNIPLTLSTYITARGLWERRTFKSIFKDFKCLMKTLYSVELSFWIPYQIFNFRFVNPQYRILCENLGNLIYQNLFSYMYHI 806
            +N +F W+  RT+L   +L  +  +SH YY+ +DK   G + K V+ K+F D  + +P++LS +    GL    +     +D +     +++++L FWIP QI NFRF++P+YR+   N+    +  LF+Y YH+
Sbjct:   67 DNKKFDWDSKRTYLFAGALCILAPMSHYYYKFLDKYLFGTAVKTVVKKMFIDTCIFVPISLSAFYFVHGLLSGHSASYTAQDLEQTGLRMWALDLVFWIPVQIINFRFISPKYRVSVVNVAAFCFDVLFTYFYHV 201

The following BLAST results are available for this feature:

BLAST of Protein CBG14354 vs. Ensembl Human
BLAST of Protein CBG14354 vs. Ensembl Celegans
BLAST of Protein CBG14354 vs. Ensembl Fly
BLAST of Protein CBG14354 vs. Ensembl Zebrafish
BLAST of Protein CBG14354 vs. Ensembl Xenopus
BLAST of Protein CBG14354 vs. Ensembl Mouse
BLAST of Protein CBG14354 vs. UniProt/SwissProt
BLAST of Protein CBG14354 vs. TrEMBL
BLAST of Protein CBG14354 vs. Ensembl Cavefish
BLAST of Protein CBG14354 vs. Ensembl Sea Lamprey
BLAST of Protein CBG14354 vs. Ensembl Yeast
BLAST of Protein CBG14354 vs. Ensembl Nematostella
BLAST of Protein CBG14354 vs. Ensembl Medaka
BLAST of Protein CBG14354 vs. Planmine SMEST

BLAST of Protein CBG14354 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Protein CBG14354 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 1


Match Name	E-value	Identity	Description
ZK470.1	6.447e-10	31.78	pep chromosome:WBcel235:X:4164302:4166138:1 gene:W...	[more]

BLAST of Protein CBG14354 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5


Match Name	E-value	Identity	Description
CG5906	5.979e-11	27.13	gene:FBgn0036217 transcript:FBtr0076071	[more]
CG1662	2.463e-10	28.23	gene:FBgn0030481 transcript:FBtr0342624	[more]
CG1662	2.463e-10	28.23	gene:FBgn0030481 transcript:FBtr0073776	[more]
CG32263	5.983e-9	25.00	gene:FBgn0052263 transcript:FBtr0073183	[more]
CG32262	3.622e-6	24.03	gene:FBgn0052262 transcript:FBtr0073184	[more]

BLAST of Protein CBG14354 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 2


Match Name	E-value	Identity	Description
mpv17l2	2.945e-9	29.66	MPV17 mitochondrial membrane protein-like 2 [Sourc...	[more]
mpv17l2	2.945e-9	29.66	MPV17 mitochondrial membrane protein-like 2 [Sourc...	[more]

BLAST of Protein CBG14354 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 2


Match Name	E-value	Identity	Description
mpv17l2	9.636e-10	25.35	MPV17 mitochondrial membrane protein-like 2 [Sourc...	[more]
ENSXETT00000020072.1	7.177e-9	28.24	mpv17-like protein 2 [Source:NCBI gene;Acc:1004971...	[more]

BLAST of Protein CBG14354 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Protein CBG14354 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 2


Match Name	E-value	Identity	Description
sp\|Q6DIY8\|M17L2_XENTR	5.105e-9	25.35	Mpv17-like protein 2 OS=Xenopus tropicalis OX=8364...	[more]
sp\|Q6DGV7\|M17L2_DANRE	2.223e-8	29.66	Mpv17-like protein 2 OS=Danio rerio OX=7955 GN=mpv...	[more]

BLAST of Protein CBG14354 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0L8FUV3	1.137e-13	32.54	Uncharacterized protein OS=Octopus bimaculoides OX...	[more]
E9IVG5	1.432e-13	33.11	Uncharacterized protein (Fragment) OS=Solenopsis i...	[more]
N6UED5	1.635e-13	33.33	Uncharacterized protein (Fragment) OS=Dendroctonus...	[more]
J3JYJ6	2.717e-13	33.33	Uncharacterized protein OS=Dendroctonus ponderosae...	[more]
A0A0L8FU14	3.917e-13	32.54	Uncharacterized protein OS=Octopus bimaculoides OX...	[more]

BLAST of Protein CBG14354 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1


Match Name	E-value	Identity	Description
mpv17l2	1.092e-6	26.32	MPV17 mitochondrial inner membrane protein like 2 ...	[more]

BLAST of Protein CBG14354 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1


Match Name	E-value	Identity	Description
si:ch211-120k19.1	1.905e-6	26.61	si:ch211-120k19.1 [Source:ZFIN;Acc:ZDB-GENE-100922...	[more]

BLAST of Protein CBG14354 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Protein CBG14354 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Protein CBG14354 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 2


Match Name	E-value	Identity	Description
mpv17l2	3.141e-7	24.43	MPV17 mitochondrial inner membrane protein like 2 ...	[more]
mpv17l2	9.803e-7	24.43	MPV17 mitochondrial inner membrane protein like 2 ...	[more]

BLAST of Protein CBG14354 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000040050.1	8.125e-109	98.66	SMESG000040050.1	[more]
SMESG000040050.1	1.038e-105	98.66	SMESG000040050.1	[more]
SMESG000040050.1	1.341e-87	100.00	SMESG000040050.1	[more]
SMESG000040050.1	1.358e-27	100.00	SMESG000040050.1	[more]
SMESG000062744.1	6.213e-25	33.33	SMESG000062744.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence
protein sequence

transcript sequence

>SMED30032048 ID=SMED30032048|Name=Protein CBG14354|organism=Schmidtea mediterranea sexual|type=transcript|length=1013bp
TGTTTCTCGATCCGTTGCGCAATTAAATCTAATGTATATCACGCGATCTT
TTGTTGAAATCAAGTATATTATAGTGATGAATTTTTAAAAAGTATTTTTA
CGTTTTGGTCATTCAATCGATGATTAAGATCCAGCATTATGGGAAAATTT
CTGAAATCACTAAATTTTTTTAAACAACAAGCGTATGGGAAATATCTATT
TTTCACAAATATGGGAACGTATTTCCTAATCGGCGGAACGGCGGATTCAA
TTGCGCAACGGATCGAGAAACTATCAGAGGAATCAATTGAAAGATTCGAA
TTACCTCGAAAAAACAGTATTCGATAAAACACAAATTGGTAGGTAGTCGA
ATAAGGTAAATCGAAATCCTGAATCGGCCGACAGATAACGCTTTCATCAC
AGAAAATGCTGAATTCCAATGGAATAAAGACCGAACCTTTCTTCATACGA
GATCTCTAGCTTGCATGGGATGTGTCAGCCACAATTATTACCGAATTATT
GACAAAGTATTCATTGGTTATTCATGGAAAATTGTTTTAATCAAACTGTT
TTTTGATATCACCGTCAATATCCCATTAACTCTTTCCACCTACATCACAG
CCAGAGGTTTGTGGGAAAGACGGACATTCAAATCAATTTTCAAGGATTTC
AAATGTCTCATGAAAACTTTGTACAGTGTCGAATTAAGTTTCTGGATCCC
GTATCAAATCTTCAATTTCCGATTTGTCAATCCGCAATACCGAATTCTTT
GTGAAAATTTAGGAAATTTGATTTATCAAAACTTGTTTTCTTACATGTAC
CATATTTTGAGGAAAACATATCGAAGAGAAGAATGCCAATTCTAAAGTGC
TTCTGTATTACTTTGTTTATTCATATTAATTTGTTTTAAATTTGTACAAA
TTTAAATACAAAACTACTTTTCATAATGTAAATGAAATTTTAAATTTAAT
TTTCAGCTTTATTATTTTTACTTATTTATTAATATGATATTTGTATACTG
CCATATATATTTA

protein sequence of SMED30032048-orf-1

>SMED30032048-orf-1 ID=SMED30032048-orf-1|Name=SMED30032048-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=126bp
MKKGSVFIPLEFSIFCDESVICRPIQDFDLPYSTTYQFVFYRILFFRGNS
NLSIDSSDSFSIRCAIESAVPPIRKYVPIFVKNRYFPYACCLKKFSDFRN
FPIMLDLNHRLNDQNVKILFKNSSL*

protein sequence of SMED30032048-orf-2

>SMED30032048-orf-2 ID=SMED30032048-orf-2|Name=SMED30032048-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=127bp
MGCVSHNYYRIIDKVFIGYSWKIVLIKLFFDITVNIPLTLSTYITARGLW
ERRTFKSIFKDFKCLMKTLYSVELSFWIPYQIFNFRFVNPQYRILCENLG
NLIYQNLFSYMYHILRKTYRREECQF*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000018	Category 4 cell
PLANA:0000034	epidermis

Vocabulary: **INTERPRO**
Term	Definition
IPR007248	Mpv17_PMP22

Vocabulary: **cellular component**
Term	Definition
GO:0016021	integral component of membrane
GO:0016020	membrane

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007248	Mpv17/PMP22	PFAM	PF04117	Mpv17_PMP22	coord: 48..106 e-value: 1.8E-10 score: 40.9
IPR007248	Mpv17/PMP22	PANTHER	PTHR11266	PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17	coord: 1..114
None	No IPR available	PANTHER	PTHR11266:SF8	MPV17-LIKE PROTEIN 2	coord: 1..114
None	No IPR available	TMHMM	TMhelix		coord: 28..50

Main menu

Protein CBG14354

Zeng et. al., 2018

▻ Overview

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 5

Owlery

blazegraph-runner