SMED30031999

Overview
NameSMED30031999
Smed IDSMED30031999
Length (bp)1333
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30031999 (SMED30031999) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30031999 (SMED30031999) in cells (dots) of each of the 12 neoblast clusters.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30031999

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 1

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
testisSMED30031999SMESG000076929.1 GCR135smed_ncbi_20200123PMID:27163480
Saberi et al., 2016		whole organism adult hermaphrodite colorimetric in situ hybridization evidence
Note: Hover over icons to view figure legend
Alignments
SMED30031999 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.006984:5611..8505 +6644
Homology
[Close]
BLAST of SMED30031999 vs. TrEMBL
Match: A0A193KUE1 (GCR135 OS=Schmidtea mediterranea OX=79327 GN=gcr135 PE=2 SV=1)

HSP 1 Score: 855.899 bits (2210), Expect = 0.000e+0
Identity = 417/417 (100.00%), Postives = 417/417 (100.00%), Query Frame = -2 
Query:   40 MYSLRPKNNTMASINDKYRYIFSKFIEECKLNNISYTCPNVWWYNSCIRMTNSDENIDAPCPFIKSFVALKCNPDGKWNATEIGFFQLCNGAEFLYRIQIEKYFGFILYPIQIIIYLSSIFKISLYDEMLKDFCWRMIIWSLRAKTLKHGIGWLLVLMNSNSFVSAACIPITVIPIFMDLFGQSCHMALFFYLYIMLYRFDVQIRTIKSALFRITIMTPILAITVCLVLDMNKDDYYNYFECQTDIFGSRVVLAFVTSFVAMTIINIYLWIAILKKCKEMNKEAFFGIYRMEYDIAGTRKEISKREIIRTTYVLKWLLGLSVFETIVYFCSVLHIVLDGYLERPVKFNFFITAIVTFLINNAEMVTMIAIIWFNKHFQTKQNALKQWYIEIDDDKRSNNEELENFLFQDAEESIQTI 1290
            MYSLRPKNNTMASINDKYRYIFSKFIEECKLNNISYTCPNVWWYNSCIRMTNSDENIDAPCPFIKSFVALKCNPDGKWNATEIGFFQLCNGAEFLYRIQIEKYFGFILYPIQIIIYLSSIFKISLYDEMLKDFCWRMIIWSLRAKTLKHGIGWLLVLMNSNSFVSAACIPITVIPIFMDLFGQSCHMALFFYLYIMLYRFDVQIRTIKSALFRITIMTPILAITVCLVLDMNKDDYYNYFECQTDIFGSRVVLAFVTSFVAMTIINIYLWIAILKKCKEMNKEAFFGIYRMEYDIAGTRKEISKREIIRTTYVLKWLLGLSVFETIVYFCSVLHIVLDGYLERPVKFNFFITAIVTFLINNAEMVTMIAIIWFNKHFQTKQNALKQWYIEIDDDKRSNNEELENFLFQDAEESIQTI
Sbjct:    1 MYSLRPKNNTMASINDKYRYIFSKFIEECKLNNISYTCPNVWWYNSCIRMTNSDENIDAPCPFIKSFVALKCNPDGKWNATEIGFFQLCNGAEFLYRIQIEKYFGFILYPIQIIIYLSSIFKISLYDEMLKDFCWRMIIWSLRAKTLKHGIGWLLVLMNSNSFVSAACIPITVIPIFMDLFGQSCHMALFFYLYIMLYRFDVQIRTIKSALFRITIMTPILAITVCLVLDMNKDDYYNYFECQTDIFGSRVVLAFVTSFVAMTIINIYLWIAILKKCKEMNKEAFFGIYRMEYDIAGTRKEISKREIIRTTYVLKWLLGLSVFETIVYFCSVLHIVLDGYLERPVKFNFFITAIVTFLINNAEMVTMIAIIWFNKHFQTKQNALKQWYIEIDDDKRSNNEELENFLFQDAEESIQTI 417
[Close]
BLAST of SMED30031999 vs. TrEMBL
Match: A0A193KUM0 (GCR126 OS=Schmidtea mediterranea OX=79327 GN=gcr126 PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 9.088e-57
Identity = 123/418 (29.43%), Postives = 229/418 (54.78%), Query Frame = -2 
Query:   52 IFSMYSLRPKNNTMASINDKYRYIFSKFIEEC-KLNNISYTCPNVWWYNSCIRMTNSDENIDAPCPFIKSFVALKCNPDGKWNATEIGFFQLCNGAEFLYRIQIEKYFGFILYPIQIIIYLSSIFKISLYDEMLKDFCWRMIIWSLRAKTLKHGIGWLLVLMNSNSFVSAACIPITVIPIFMDLFGQSCHMALFFYLYIMLYRFDVQIRTIKSALFRITIMTPILAITVCLVLDMNKDDYYNYFECQTDIFGSRVVLAFVTSFVAMTIINIYLWIAILKKCKEMNKE-AFFGIYRMEYDIAGTRKEISKREIIRTTYVLKWLLGLSVFETIVYFCSVLHIVLDGYLERPVKFNFFITAIVTFLINNAEMVTMIAIIWFNKHFQTKQNALKQWYIEIDDDKRSNNEELENFLFQDAEES 1299
            ++ MY L P +++M  I DK+   ++   ++C KL+N S  C + W +  C+  +   E+ +  CPF  +++   C+ +G+W+  +   ++ C   EF YR+ IE+ F  ++ P  ++IY + ++ IS Y E++KDF WR ++W L+++++   I   +  +NS+      C+  T +P+ +DLF  +  +ALF ++Y +++  + Q+R IKS+L     + P+L   VCL+LD+     ++YF+CQ     SRV   +V + +   +I   L++ I+ K K +  E      YRMEYDI G RKE+SKRE++R    +K  L LS++  ++Y   V++ ++      P +  + I  I+    N A+ + +  +IWFNK  + +  A   W   ++ + ++N  +  +FL    E +
Sbjct:   26 LYIMYYLTPVDDSMEKIEDKFSPFYNIDKKKCLKLSNSS--CISTWVFQVCLTDSMRSEDNEILCPFFTTYIQPVCS-NGRWDYDDRRVYEDCYTKEFYYRLTIERTFMLLINPFILLIYQTGVYYISEYPEIVKDFNWRFVVWLLKSRSIHLFILISMCFINSSRATYEWCMLFTFLPLTLDLFYHTSMLALFIHVYAIIFNQETQLRVIKSSLKHFCFIMPLLIAIVCLILDIGTKG-HSYFQCQCGPILSRVYYVYVATTLVQILIAFPLYLRIMSKLKTIELENNLRNHYRMEYDILGERKEVSKRELVRCKLSMKVFLLLSIWNFVMYCVMVINRII-----LPNRLVYKIMVIIYSSRNIADCIMLTILIWFNKGLRQRMAAWDLWNNVLNVEVKTNQND-ADFLLAIQETT 433
[Close]
BLAST of SMED30031999 vs. TrEMBL
Match: A0A193KUM8 (GCR136 OS=Schmidtea mediterranea OX=79327 GN=gcr136 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.729e-46
Identity = 123/422 (29.15%), Postives = 207/422 (49.05%), Query Frame = -2 
Query:   43 MYSLRPKNNTMASINDKYRYIFSKFIEECKLNNISYTCPNVWWYNSCIRMTNS-DENIDAPCPFIKSFVALKCNPDGKWNATEIGFFQLCNGAEFLYRIQIEKYFGFILYPIQIIIYLSSIFKISLYDEMLKDFCWRMIIWSLRAKTLKHGIGWLLVLMNSNSFVSAACIPITVIPIFMDLFGQSCHMALFFYLYIMLYRFDVQIRTIKSALFRITIMTPILAITVCLVLDMNKDDYYNYFECQTDIFGSRVVLAFVTSFVAMTIINIYLWIAILKKCKEMN-KEAFFGIYRMEYDIAGTRKEISKREIIRTTYVLKWLLGLSVFETIVYFCSVLHIVLDGYLERPVKFNFFITAIVTFLINNAEMVTMIAIIWFNKHFQTKQNALKQWYIEID----DDKRSNNEELENFLFQDAEESIQT 1290
            MYSL P +++  SI+ K+   F +   +C L N SY CP  WWY SC+ + N+        CPF      + C  +G WN +    F  CNG  FL+R  I       L P+ ++I+++S FK+  YDE+ ++F W++IIW    K++    G +L  +NS++F+   C+ I    ++ + F         FYLY ++     Q+R IKSAL  I  ++PI+ I + L+ D+        F+C+ +   S +   +V   ++  +  IY+ + I      +N       +YR+EYDI G RKEIS R+I R  Y+LK ++ ++    +V     +  +   Y    V +  F   + +F  +   +V  + ++W N   ++   AL++WY +ID     D   N+E          +ES +T
Sbjct:    1 MYSLIPDSDSAESISKKFSIFFEQEKADCLLQNDSYKCPKEWWYLSCVTLANNITTASQVQCPFYNLKTDIMC-INGTWNLSPKQLFVNCNGNLFLFRNTITNIVYKSLLPVLLLIFMTSTFKLYEYDEISQEFQWKIIIWMFIFKSVSTITGIVLASLNSSNFIYHLCMLIVTFSMYGEYFTICSMFVQCFYLYAIVNYMHTQLRIIKSALNHIMFISPIILIVIGLIFDVTFTKGRT-FQCKDEPMSSPIQFLYVYICISGIVSMIYMRVKINYSLHYLNISTNHTTVYRVEYDIIGRRKEISHRDIQRLLYILKIIICITGINILVN----VFALATKYPYVSVYYYKFTVILYSFK-DLTFVVLAVKVVWLNPTLKSLTTALERWYQDIDLKKTLDDYGNDEFFAALKVATDDESSET 415
[Close]
BLAST of SMED30031999 vs. Planmine SMEST
Match: SMESG000076929.1 (SMESG000076929.1)

HSP 1 Score: 834.713 bits (2155), Expect = 0.000e+0
Identity = 407/407 (100.00%), Postives = 407/407 (100.00%), Query Frame = -2 
Query:   40 MASINDKYRYIFSKFIEECKLNNISYTCPNVWWYNSCIRMTNSDENIDAPCPFIKSFVALKCNPDGKWNATEIGFFQLCNGAEFLYRIQIEKYFGFILYPIQIIIYLSSIFKISLYDEMLKDFCWRMIIWSLRAKTLKHGIGWLLVLMNSNSFVSAACIPITVIPIFMDLFGQSCHMALFFYLYIMLYRFDVQIRTIKSALFRITIMTPILAITVCLVLDMNKDDYYNYFECQTDIFGSRVVLAFVTSFVAMTIINIYLWIAILKKCKEMNKEAFFGIYRMEYDIAGTRKEISKREIIRTTYVLKWLLGLSVFETIVYFCSVLHIVLDGYLERPVKFNFFITAIVTFLINNAEMVTMIAIIWFNKHFQTKQNALKQWYIEIDDDKRSNNEELENFLFQDAEESIQTI 1260
            MASINDKYRYIFSKFIEECKLNNISYTCPNVWWYNSCIRMTNSDENIDAPCPFIKSFVALKCNPDGKWNATEIGFFQLCNGAEFLYRIQIEKYFGFILYPIQIIIYLSSIFKISLYDEMLKDFCWRMIIWSLRAKTLKHGIGWLLVLMNSNSFVSAACIPITVIPIFMDLFGQSCHMALFFYLYIMLYRFDVQIRTIKSALFRITIMTPILAITVCLVLDMNKDDYYNYFECQTDIFGSRVVLAFVTSFVAMTIINIYLWIAILKKCKEMNKEAFFGIYRMEYDIAGTRKEISKREIIRTTYVLKWLLGLSVFETIVYFCSVLHIVLDGYLERPVKFNFFITAIVTFLINNAEMVTMIAIIWFNKHFQTKQNALKQWYIEIDDDKRSNNEELENFLFQDAEESIQTI
Sbjct:    1 MASINDKYRYIFSKFIEECKLNNISYTCPNVWWYNSCIRMTNSDENIDAPCPFIKSFVALKCNPDGKWNATEIGFFQLCNGAEFLYRIQIEKYFGFILYPIQIIIYLSSIFKISLYDEMLKDFCWRMIIWSLRAKTLKHGIGWLLVLMNSNSFVSAACIPITVIPIFMDLFGQSCHMALFFYLYIMLYRFDVQIRTIKSALFRITIMTPILAITVCLVLDMNKDDYYNYFECQTDIFGSRVVLAFVTSFVAMTIINIYLWIAILKKCKEMNKEAFFGIYRMEYDIAGTRKEISKREIIRTTYVLKWLLGLSVFETIVYFCSVLHIVLDGYLERPVKFNFFITAIVTFLINNAEMVTMIAIIWFNKHFQTKQNALKQWYIEIDDDKRSNNEELENFLFQDAEESIQTI 407
[Close]
BLAST of SMED30031999 vs. Planmine SMEST
Match: SMESG000076928.1 (SMESG000076928.1)

HSP 1 Score: 404.445 bits (1038), Expect = 5.676e-140
Identity = 190/321 (59.19%), Postives = 247/321 (76.95%), Query Frame = -2 
Query:   76 FFQLCNGAEFLYRIQIEKYFGFILYPIQIIIYLSSIFKISLYDEMLKDFCWRMIIWSLRAKTLKHGIGWLLVLMNSNSFVSAACIPITVIPIFMDLFGQSCHMALFFYLYIMLYRFDVQIRTIKSALFRITIMTPILAITVCLVLDMNKDDYYNYFECQTDIFGSRVVLAFVTSFVAMTIINIYLWIAILKKCKEMNKEAFFGIYRMEYDIAGTRKEISKREIIRTTYVLKWLLGLSVFETIVYFCSVLHIVLDGYLERPVKFNFFITAIVTFLINNAEMVTMIAIIWFNKHFQTKQNALKQWYIEIDDDKRSNNEELENF 1038
            FF LCNG +FLYR QIEKYFGF+LYP+Q+I+ L+SIFKIS++DEM+KDF WRMIIWSLRAKT+K+ IGW++VLMNSN  VS  CI +++IP+  D F  +C MALFFY+YI+L+RFDVQIRTIKSALFR+T+MTP LAI VCLVLD+N DD YNYFECQTDIFGSR++ A++T + A+T+I  YLWIAI +K  EM K+   G YRMEYDI G RKEIS+REI R  Y+L WLL  +VF++IV   ++   +     E P  + F I A+  F++   E VT++AI+W N+HF+ + NAL+ WY+EI+++K    EE E+F
Sbjct:    2 FFDLCNGKQFLYRTQIEKYFGFVLYPMQMILLLTSIFKISIFDEMVKDFSWRMIIWSLRAKTIKYTIGWMMVLMNSNYVVSTTCIALSLIPVLADFFSLACQMALFFYVYIILFRFDVQIRTIKSALFRVTVMTPFLAIIVCLVLDLNTDDNYNYFECQTDIFGSRILHAYLTIYFAVTVILFYLWIAISRKINEMRKQVLIGTYRMEYDIVGARKEISRREIFRVRYILNWLLAHNVFDSIVLSSTIYQTI----SETPRTYYFLIMALTLFILIFGEAVTVLAIVWMNRHFRDRHNALRLWYVEINEEKNLGQEE-EDF 317
[Close]
BLAST of SMED30031999 vs. Planmine SMEST
Match: SMESG000076933.1 (SMESG000076933.1)

HSP 1 Score: 202.601 bits (514), Expect = 1.912e-60
Identity = 123/415 (29.64%), Postives = 227/415 (54.70%), Query Frame = -2 
Query:   52 MYSLRPKNNTMASINDKYRYIFSKFIEEC-KLNNISYTCPNVWWYNSCIRMTNSDENIDAPCPFIKSFVALKCNPDGKWNATEIGFFQLCNGAEFLYRIQIEKYFGFILYPIQIIIYLSSIFKISLYDEMLKDFCWRMIIWSLRAKTLKHGIGWLLVLMNSNSFVSAACIPITVIPIFMDLFGQSCHMALFFYLYIMLYRFDVQIRTIKSALFRITIMTPILAITVCLVLDMNKDDYYNYFECQTDIFGSRVVLAFVTSFVAMTIINIYLWIAILKKCKEMNKE-AFFGIYRMEYDIAGTRKEISKREIIRTTYVLKWLLGLSVFETIVYFCSVLHIVLDGYLERPVKFNFFITAIVTFLINNAEMVTMIAIIWFNKHFQTKQNALKQWYIEIDDDKRSNNEELENFLFQDAEES 1290
            MY L P +++M  I DK+   ++   ++C KL+N S  C + W +  C+  +   E+ +  CPF  +++   C+ +G+W+  +   ++ C   EF YR+ IE+ F  ++ P  ++IY + ++ IS Y E++KDF WR ++W L+++++   I   +  +NS+      C+  T +P+ +DLF  +  +ALF ++Y +++  + Q+R IKS+L     + P+L   VCL+LD+     ++YF+CQ     SRV   +V + +   +I   L++ I+ K K +  E      YRMEYDI G RKE+SKRE++R    +K  L LS++  ++Y   V++ ++      P +  + I  I+    N A+ + +  +IWFNK  + +  A   W   ++ + ++N  +  +FL    E +
Sbjct:    1 MYYLTPVDDSMEKIEDKFSPFYNIDKKKCLKLSNSS--CISTWVFQVCLTDSMRSEDNEILCPFFTTYIQPVCS-NGRWDYDDRRVYEDCYTKEFYYRLTIERTFMLLINPFILLIYQTGVYYISEYPEIVKDFNWRFVVWLLKSRSIHLFILISMCFINSSRATYEWCMLFTFLPLTLDLFYHTSMLALFIHVYAIIFNQETQLRVIKSSLKHFCFIMPLLIAIVCLILDIGTKG-HSYFQCQCGPILSRVYYVYVATTLVQILIAFPLYLRIMSKLKTIELENNLRNHYRMEYDILGERKEVSKRELVRCKLSMKVFLLLSIWNFVMYCVMVINRII-----LPNRLVYKIMVIIYSSRNIADCIMLTILIWFNKGLRQRMAAWDLWNNVLNVEVKTNQND-ADFLLAIQETT 405
[Close]
BLAST of SMED30031999 vs. Planmine SMEST
Match: SMESG000018582.1 (SMESG000018582.1)

HSP 1 Score: 166.007 bits (419), Expect = 3.728e-47
Identity = 106/320 (33.12%), Postives = 166/320 (51.88%), Query Frame = -2 
Query:  346 MYSLRPKNNTMASINDKYRYIFSKFIEECKLNNISYTCPNVWWYNSCIRMTNSDENIDAP----CPFIKSFVALKCNPDGKWNATEIGFFQLCNGAEFLYRIQIEKYFGFILYPIQIIIYLSSIFKISLYDEMLKDFCWRMIIWSLRAKTLKHGIGWLLVLMNSNSFVSAACIPITVIPIFMDLFGQSCHMALFFYLYIMLYRFDVQIRTIKSALFRITIMTPILAITVCLVLDMNKDDYYNYFECQTDIFGSRVVLAFVTSFVAMTIINIYLWIAILKKCKEMN-KEAFFGIYRMEYDIAGTRKEISKREIIRTTYVLK 1290
            MYSL P +++  SI+ K+   F +   +C L N SY CP  WWY SC+ + N   NI A     CPF      + C  +G WN +    F  CNG  FL+R  I       L P+ ++I+++S FK+  YDE+ ++F W++IIW    K++    G +L  +NS++F+   C+ I    ++ + F         FYLY ++     Q+R IKSAL  I  ++PI+ I + L+ D+        F+C+ +   S +   +V   ++  +  IY+ + I      +N       +YR+EYDI G RKEIS R+I R  Y+LK
Sbjct:    1 MYSLIPDSDSAESISKKFSIFFEQEKADCLLQNDSYKCPKEWWYLSCVTLAN---NITAASQVQCPFYNLKTDIMC-INGTWNLSPKQLFVNCNGNLFLFRNTITNIVYKSLLPVLLLIFMTSTFKLYEYDEISQEFQWKIIIWMFIFKSVSTITGIVLASLNSSNFIYHLCMLIVTFSMYGEYFTICSMFVQCFYLYAIVNYMHTQLRIIKSALNHIMFISPIILIVIGLIFDVTFTKGRT-FQCKDEPMSSPIQFLYVYICISGIVSMIYMRVKINYSLHYLNISTNHTTVYRVEYDIIGRRKEISHRDIQRLLYILK 315
The following BLAST results are available for this feature:
BLAST of SMED30031999 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031999 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031999 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031999 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031999 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031999 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031999 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031999 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 3
Match NameE-valueIdentityDescription
A0A193KUE10.000e+0100.00GCR135 OS=Schmidtea mediterranea OX=79327 GN=gcr13... [more]
A0A193KUM09.088e-5729.43GCR126 OS=Schmidtea mediterranea OX=79327 GN=gcr12... [more]
A0A193KUM87.729e-4629.15GCR136 OS=Schmidtea mediterranea OX=79327 GN=gcr13... [more]
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BLAST of SMED30031999 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031999 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031999 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031999 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031999 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031999 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 4
Match NameE-valueIdentityDescription
SMESG000076929.10.000e+0100.00SMESG000076929.1[more]
SMESG000076928.15.676e-14059.19SMESG000076928.1[more]
SMESG000076933.11.912e-6029.64SMESG000076933.1[more]
SMESG000018582.13.728e-4733.13SMESG000018582.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30031999 ID=SMED30031999|Name=SMED30031999|organism=Schmidtea mediterranea sexual|type=transcript|length=1333bp
GGCATGTAATAAACAAAAAGTAGTTCTTTTCGATATTTATATTGTCTGAA
TGCTTTCTTCGGCATCTTGAAATAGAAAATTTTCTAATTCTTCGTTATTA
GACCTTTTATCATCATCGATCTCGATATACCATTGCTTCAACGCATTTTG
CTTAGTTTGGAAATGTTTATTGAACCAAATTATAGCAATCATGGTTACCA
TTTCGGCATTGTTAATTAAAAATGTAACTATTGCAGTAATAAAAAAATTG
AATTTTACAGGACGCTCTAAATAACCGTCTAAAACAATATGTAAGACTGA
ACAGAAATAAACTATCGTTTCAAATACACTTAACCCTAATAACCATTTCA
ACACATAAGTAGTACGTATTATTTCACGTTTAGAGATTTCTTTTCTTGTC
CCTGCTATATCATATTCCATTCTATATATTCCAAAAAATGCTTCTTTATT
CATTTCCTTGCATTTTTTTAAAATAGCAATCCAAAGATATATATTAATGA
TAGTCATAGCTACAAAACTCGTTACAAAAGCAAGGACTACCCTTGAACCA
AATATGTCTGTCTGACACTCGAAATAATTATAATAATCATCCTTATTCAT
GTCTAACACTAAGCATACAGTTATTGCGAGTATCGGAGTCATTATTGTAA
TGCGAAACAAGGCTGATTTGATAGTGCGAATCTGTACATCAAATCTGTAC
AACATTATATATAAGTAAAAGAATAAAGCCATATGACATGATTGCCCAAA
TAAGTCCATAAATATCGGTATAACGGTAATTGGAATACAGGCTGCCGAAA
CAAAAGAATTGGAATTCATCAAAACCAGCAACCAACCAATTCCATGTTTC
AAAGTCTTTGCCCTCAAAGACCAAATGATCATTCTCCAGCAGAAATCCTT
GAGCATTTCGTCGTAAAGAGAAATCTTGAAAATACTTGATAGATATATTA
TAATTTGAATCGGATAAAGAATAAATCCAAAATATTTTTCAATTTGTATT
CGATAGAGAAACTCTGCCCCATTGCAAAGTTGGAAAAATCCTATTTCAGT
GGCATTCCATTTTCCGTCGGGATTGCATTTAAGTGCTACAAAGGATTTGA
TAAATGGACATGGTGCATCTATATTTTCGTCGCTGTTGGTCATCCTGATA
CAGGAATTGTACCACCAGACGTTGGGACAGGTATAACTTATATTATTCAA
TTTGCATTCTTCAATGAATTTGGAAAATATATATCTATATTTATCATTTA
TTGATGCCATTGTATTATTTTTCGGTCGTAGAGAATACATTGAAAAAATT
ATTAAAAATCAATCAATTAATTCAAAGCAACTT
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protein sequence of SMED30031999-orf-1

>SMED30031999-orf-1 ID=SMED30031999-orf-1|Name=SMED30031999-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=418bp
MYSLRPKNNTMASINDKYRYIFSKFIEECKLNNISYTCPNVWWYNSCIRM
TNSDENIDAPCPFIKSFVALKCNPDGKWNATEIGFFQLCNGAEFLYRIQI
EKYFGFILYPIQIIIYLSSIFKISLYDEMLKDFCWRMIIWSLRAKTLKHG
IGWLLVLMNSNSFVSAACIPITVIPIFMDLFGQSCHMALFFYLYIMLYRF
DVQIRTIKSALFRITIMTPILAITVCLVLDMNKDDYYNYFECQTDIFGSR
VVLAFVTSFVAMTIINIYLWIAILKKCKEMNKEAFFGIYRMEYDIAGTRK
EISKREIIRTTYVLKWLLGLSVFETIVYFCSVLHIVLDGYLERPVKFNFF
ITAIVTFLINNAEMVTMIAIIWFNKHFQTKQNALKQWYIEIDDDKRSNNE
ELENFLFQDAEESIQTI*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000208testis
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableTMHMMTMhelixcoord: 351..373
NoneNo IPR availableTMHMMTMhelixcoord: 180..202
NoneNo IPR availableTMHMMTMhelixcoord: 104..126
NoneNo IPR availableTMHMMTMhelixcoord: 251..273
NoneNo IPR availableTMHMMTMhelixcoord: 209..231
NoneNo IPR availableTMHMMTMhelixcoord: 153..175
NoneNo IPR availableTMHMMTMhelixcoord: 314..336