UPF0638 protein B

Overview
NameUPF0638 protein B
Smed IDSMED30031945
Length (bp)1081
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of UPF0638 protein B (SMED30031945) t-SNE clustered cells

Violin plots show distribution of expression levels for UPF0638 protein B (SMED30031945) in cells (dots) of each of the 12 neoblast clusters.

 

back to top

 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of UPF0638 protein B (SMED30031945) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for UPF0638 protein B (SMED30031945) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top

 

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020



SMED30031945

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 7

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
head regionSMED30031945h1SMcG0010397 SmedASXL_010622SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
protonephridiaSMED30031945h1SMcG0010397 dd_Smed_v4_10707_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30031945h1SMcG0010397 dd_Smed_v4_10707_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30031945h1SMcG0010397 dd_Smed_v4_10707_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30031945h1SMcG0010397 dd_Smed_v4_10707_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30031945h1SMcG0010397 dd_Smed_v6_10707_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
epidermisSMED30031945h1SMcG0010397 dd_Smed_v4_10707_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of UPF0638 protein B vs. Ensembl Human
Match: FAM228B (family with sequence similarity 228 member B [Source:HGNC Symbol;Acc:HGNC:24736])

HSP 1 Score: 49.6766 bits (117), Expect = 3.543e-6
Identity = 55/228 (24.12%), Postives = 105/228 (46.05%), Query Frame = 1 
Query:  208 SSKAILQLQEKSDLEVQA---SNSIVGEILEREKTIVKDNVDNIIKEYQVNEQRRKEVLNRRWNRNIYKPISERLDQSRNDSNLDIFIQKKRDIH-QNYLDYVNRKGFVSLSEYCSDEYYPYALFSKQNSVYNSKSNTPIRVQSANPTSVDENSRIEEERCQLRCLTGSILSKKDXXXXXXXXXXXXXXX----XXXVDCLAWSYMPYNQINSDVRTRSRKKMRGDFN 867
            SSK  L+ +    +EV A   + + +  IL +E +++K+ +D  ++ +     RRKE+L +RW   +  P+ +++ +          I+K+R      +L +VN+KG   +  Y   EY P+ + SK++  +   +  P      +P    +  +  E+R  L+C TG I S K+ + +    +          R  +    W  +P   I S+   R R K++ +FN
Sbjct:   19 SSKEWLEPKPLCFMEVLAKEDTEAAIQSILYKENSVIKE-LDKYLQHHAFLNARRKEMLYKRWVDCVADPLQKKIIEKVCSHKK---IKKRRQGELDGFLKHVNKKGNAFIEHYDPKEYDPFYM-SKKDPNFLKVTIPPFH----DPLKKAQYDKDNEKRTLLQCETGKIYSIKEFKEVEKVQLHSRFPQISNSRHFITPNEWLKLPTRYIESEFCRRRRLKVKVNFN 237
[Close]
BLAST of UPF0638 protein B vs. Ensembl Human
Match: FAM228B (family with sequence similarity 228 member B [Source:HGNC Symbol;Acc:HGNC:24736])

HSP 1 Score: 49.6766 bits (117), Expect = 3.543e-6
Identity = 55/228 (24.12%), Postives = 105/228 (46.05%), Query Frame = 1 
Query:  208 SSKAILQLQEKSDLEVQA---SNSIVGEILEREKTIVKDNVDNIIKEYQVNEQRRKEVLNRRWNRNIYKPISERLDQSRNDSNLDIFIQKKRDIH-QNYLDYVNRKGFVSLSEYCSDEYYPYALFSKQNSVYNSKSNTPIRVQSANPTSVDENSRIEEERCQLRCLTGSILSKKDXXXXXXXXXXXXXXX----XXXVDCLAWSYMPYNQINSDVRTRSRKKMRGDFN 867
            SSK  L+ +    +EV A   + + +  IL +E +++K+ +D  ++ +     RRKE+L +RW   +  P+ +++ +          I+K+R      +L +VN+KG   +  Y   EY P+ + SK++  +   +  P      +P    +  +  E+R  L+C TG I S K+ + +    +          R  +    W  +P   I S+   R R K++ +FN
Sbjct:   19 SSKEWLEPKPLCFMEVLAKEDTEAAIQSILYKENSVIKE-LDKYLQHHAFLNARRKEMLYKRWVDCVADPLQKKIIEKVCSHKK---IKKRRQGELDGFLKHVNKKGNAFIEHYDPKEYDPFYM-SKKDPNFLKVTIPPFH----DPLKKAQYDKDNEKRTLLQCETGKIYSIKEFKEVEKVQLHSRFPQISNSRHFITPNEWLKLPTRYIESEFCRRRRLKVKVNFN 237
[Close]
BLAST of UPF0638 protein B vs. Ensembl Zebrafish
Match: fam228a (family with sequence similarity 228 member A [Source:ZFIN;Acc:ZDB-GENE-041014-83])

HSP 1 Score: 84.3445 bits (207), Expect = 1.939e-18
Identity = 55/174 (31.61%), Postives = 92/174 (52.87%), Query Frame = 1 
Query:  196 QNYISSKAILQLQEKSDLEVQASNSIVGEILEREKTIVKDNVDNIIKEYQVNEQRRKEVLNRRWNRNIYKPISERLDQSRNDSNLDIFIQKKRDIHQNYLDYVNRKGFVSLSEYCSDEYYPYALFSKQNSVYNSKSNTPIRVQSANPTSVDENSRIEEERCQLRCLTGSILSKK 717
            QN +S  +  QL E+   E Q  N+I   +LE E  ++KD +D  +        R++++L++RW +N++ PI + + Q   +   +  +QK R +H +Y+DY N KGFV L  Y   EY P+  +      +  K +TP      +P S+   +RI+E+   LRC TG I  ++
Sbjct:   11 QNTLSLSSKKQLLEQLRREQQEVNAITQPLLETEARLIKD-LDLYLTHKDTLNLRKRKLLHKRWTQNVWLPIQQSIQQHFMEHGYNE-MQKMRSMHAHYIDYCNAKGFVFLESYDPLEYNPFLHYFSTPQYH--KISTPA---LEDPLSLHSRTRIKEKTTILRCQTGHIYQRQ 177
[Close]
BLAST of UPF0638 protein B vs. Ensembl Zebrafish
Match: fam228a (family with sequence similarity 228 member A [Source:ZFIN;Acc:ZDB-GENE-041014-83])

HSP 1 Score: 83.5741 bits (205), Expect = 3.508e-18
Identity = 55/174 (31.61%), Postives = 91/174 (52.30%), Query Frame = 1 
Query:  196 QNYISSKAILQLQEKSDLEVQASNSIVGEILEREKTIVKDNVDNIIKEYQVNEQRRKEVLNRRWNRNIYKPISERLDQSRNDSNLDIFIQKKRDIHQNYLDYVNRKGFVSLSEYCSDEYYPYALFSKQNSVYNSKSNTPIRVQSANPTSVDENSRIEEERCQLRCLTGSILSKK 717
            QN +S  +  QL E+   E Q  N+I   +LE E   +KD +D  +        R++++L++RW +N++ PI + + Q   +   +  +QK R +H +Y+DY N KGFV L  Y   EY P+  +      +  K +TP      +P S+   +RI+E+   LRC TG I  ++
Sbjct:   11 QNTLSLSSKKQLLEQLRREQQEVNAITQPLLETEARFIKD-LDLYLTHKDTLNLRKRKLLHKRWTQNVWLPIQQSIQQHFMEHGYNE-MQKMRSMHAHYIDYCNAKGFVFLESYDPLEYNPFLHYFSTPQYH--KISTPA---LEDPLSLHSRTRIKEKTTILRCQTGHIYQRQ 177
[Close]
BLAST of UPF0638 protein B vs. Ensembl Xenopus
Match: kiaa0100 (KIAA0100 [Source:Xenbase;Acc:XB-GENE-955497])

HSP 1 Score: 76.6406 bits (187), Expect = 2.896e-15
Identity = 71/260 (27.31%), Postives = 130/260 (50.00%), Query Frame = 1 
Query:   94 KTVKNSRNNSAMS--VTSCASFKLDPTAMIKHSEHLQNYISSKAILQLQEKSDLEVQASNSIVGEILEREKTIVKDNVDNIIKEYQVNEQRRKEVLNRRWNRNIYKPISERLDQSRNDSNLDIFIQKKRDIHQNYLDYVNRKGFVSLSEYCSDEYYPYALFSKQNSVYNSKSNTPIRVQSANPTSVDENSRIEEERCQLRCLTGSILSKKDXXXXXXXXXXXXXXXXXXVDCLAWSYMPYNQINSDVRTRSRKKMRGDFN 867
            K  ++SR++  +   + SC   ++  TA  + +   +++++ K  +Q+    D E Q     +  +L+ E      N+   +++ +  E RRKE+ ++RW   +  P+ + +    +  +     +++R +   YL Y N+KG   L +Y S EY PY   S Q S    +   P   Q  +P       ++EEER  L C TG I S +++  L +  +P VPLGR  ++ + W   P+  I S++R +SR+++RG FN
Sbjct:   32 KEKESSRDSGCVGRLIHSCPGARIMSTASNRKA---RDWLAQKPNIQM--IVDEENQEIRETMQNVLDAENHF-NQNLTKYLQKTENLELRRKEMQHKRWTERVSDPLQKTIQNYVDGQSARDIERRRRSVLGQYLKYCNKKGVAFLRDYDSAEYNPY---SHQLSKQYLRVFMP---QFLDPLLQYTQRKVEEERITLHCETGRIYSAREIHELNMKKLPQVPLGRHSMNGVEWVKAPFGYIESEIRQKSRQRIRGTFN 279
[Close]
BLAST of UPF0638 protein B vs. Ensembl Mouse
Match: Fam228b (family with sequence similarity 228, member B [Source:MGI Symbol;Acc:MGI:2442121])

HSP 1 Score: 53.9138 bits (128), Expect = 7.170e-8
Identity = 47/175 (26.86%), Postives = 88/175 (50.29%), Query Frame = 1 
Query:  208 SSKAILQLQEKSDLEVQA---SNSIVGEILEREKTIVKDNVDNIIKEYQVNEQRRKEVLNRRWNRNIYKPISERL-DQSRNDSNLDIFIQKKRDIHQNYLDYVNRKGFVSLSEYCSDEYYPYALFSKQNSVYNSKSNTPIRVQSANPTSVDENSRIEEERCQLRCLTGSILSKKD 720
            SSK  L+ Q  S +E  A   +++ V  IL RE  I+K+ +D  +        RRKE+L ++W   +  P+ +++ ++  +  N+    +++R    N+L + N+KG   +  Y   EY P+ + SK++  +      P R    +P    +  + +E+R  L+C TG I + K+
Sbjct:   22 SSKEWLEPQSLSFMEALAKEDTDAAVQSILYRENYIMKE-LDKYLHHQDFLNTRRKEMLYKKWVERVADPLQKKIIEKVHSHKNIK---KRRRQELDNFLKHSNKKGNAFIEHYDPKEYDPFYM-SKEDPNFLKVIMPPFR----DPLKKAQYDQDDEKRTLLQCETGKIYTMKE 187
[Close]
BLAST of UPF0638 protein B vs. Ensembl Mouse
Match: Fam228b (family with sequence similarity 228, member B [Source:MGI Symbol;Acc:MGI:2442121])

HSP 1 Score: 50.8322 bits (120), Expect = 3.338e-7
Identity = 45/169 (26.63%), Postives = 85/169 (50.30%), Query Frame = 1 
Query:  208 SSKAILQLQEKSDLEVQA---SNSIVGEILEREKTIVKDNVDNIIKEYQVNEQRRKEVLNRRWNRNIYKPISERL-DQSRNDSNLDIFIQKKRDIHQNYLDYVNRKGFVSLSEYCSDEYYPYALFSKQNSVYNSKSNTPIRVQSANPTSVDENSRIEEERCQLRCLTGS 702
            SSK  L+ Q  S +E  A   +++ V  IL RE  I+K+ +D  +        RRKE+L ++W   +  P+ +++ ++  +  N+    +++R    N+L + N+KG   +  Y   EY P+ + SK++  +      P R    +P    +  + +E+R  L+C TG+
Sbjct:   22 SSKEWLEPQSLSFMEALAKEDTDAAVQSILYRENYIMKE-LDKYLHHQDFLNTRRKEMLYKKWVERVADPLQKKIIEKVHSHKNIK---KRRRQELDNFLKHSNKKGNAFIEHYDPKEYDPFYM-SKEDPNFLKVIMPPFR----DPLKKAQYDQDDEKRTLLQCETGT 181
[Close]
BLAST of UPF0638 protein B vs. UniProt/SwissProt
Match: sp|A6QQ68|F228B_BOVIN (Protein FAM228B OS=Bos taurus OX=9913 GN=FAM228B PE=2 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.600e-10
Identity = 63/239 (26.36%), Postives = 112/239 (46.86%), Query Frame = 1 
Query:  184 SEHLQNYISSKAILQLQEKSDLEVQASNSI---VGEILEREKTIVKDNVDNIIKEYQVNEQRRKEVLNRRWNRNIYKPISERLDQSRNDSNLDIFIQKKRDIH-QNYLDYVNRKGFVSLSEYCSDEYYPYALFSKQNSVYNSKSNTPIRVQSANPTSVDENSRIEEERCQLRCLTGSILSKKDXXXXXXXXXXXXXXXXXXVDCLA----WSYMPYNQINSDVRTRSRKKMRGDFNYGS 876
            ++ L    SS+  L+ Q  S +EV A   +   +  IL RE  I+K+ +D  +K +     RRKE+L +RW  ++  P+ +++ +          I+K+R      +L YVN+KG   +  Y   EY P+ + +++N  +   +  P R    +P    +  + + +R  L+C TG I + K+ + +    +     G      L     W  +P N I S+   RSR K++ +FN  S
Sbjct:   10 TDKLPKLKSSREWLEPQPLSFMEVLAKEDVDTAIQSILYRENYIIKE-LDKCLKHHDFLNARRKEILYKRWVDHVADPLQKKIIEKVTSYKK---IKKRRQEELDGFLKYVNKKGNAFIEHYDPKEYDPFYM-NRENPNFLKVTIPPFR----DPLKKAQYDKDDGKRILLQCETGKIYTMKEFKEVEKAKLHSRFPGISNSRHLMTPNEWIRLPPNYIESEFCKRSRLKIKVNFNESS 239
[Close]
BLAST of UPF0638 protein B vs. UniProt/SwissProt
Match: sp|Q497Q6|F228B_MOUSE (Protein FAM228B OS=Mus musculus OX=10090 GN=Fam228b PE=2 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 5.015e-7
Identity = 47/175 (26.86%), Postives = 88/175 (50.29%), Query Frame = 1 
Query:  208 SSKAILQLQEKSDLEVQA---SNSIVGEILEREKTIVKDNVDNIIKEYQVNEQRRKEVLNRRWNRNIYKPISERL-DQSRNDSNLDIFIQKKRDIHQNYLDYVNRKGFVSLSEYCSDEYYPYALFSKQNSVYNSKSNTPIRVQSANPTSVDENSRIEEERCQLRCLTGSILSKKD 720
            SSK  L+ Q  S +E  A   +++ V  IL RE  I+K+ +D  +        RRKE+L ++W   +  P+ +++ ++  +  N+    +++R    N+L + N+KG   +  Y   EY P+ + SK++  +      P R    +P    +  + +E+R  L+C TG I + K+
Sbjct:   22 SSKEWLEPQSLSFMEALAKEDTDAAVQSILYRENYIMKE-LDKYLHHQDFLNTRRKEMLYKKWVERVADPLQKKIIEKVHSHKNIK---KRRRQELDNFLKHSNKKGNAFIEHYDPKEYDPFYM-SKEDPNFLKVIMPPFR----DPLKKAQYDQDDEKRTLLQCETGKIYTMKE 187
[Close]
BLAST of UPF0638 protein B vs. TrEMBL
Match: A0A210QQE2 (Uncharacterized protein OS=Mizuhopecten yessoensis OX=6573 GN=KP79_PYT07478 PE=4 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.253e-30
Identity = 88/256 (34.38%), Postives = 145/256 (56.64%), Query Frame = 1 
Query:  109 SRNNSAMSVTSCASFKLDPTAMIKHSEHLQNYISSKAILQLQEKSDLEVQASNSIVGEILEREKTIVKDNVDNIIKEYQVNEQRRKEVLNRRWNRNIYKPISERLDQSRNDSNLDIFIQKKRDIHQNYLDYVNRKGFVSLSEYCSDEYYPYALFSKQNSVYNSKSNTPIRVQSA---NPTSVDENSRIEEERCQLRCLTGSILSKKDXXXXXXXXXXXXXXXXXXVDCLAWSYMPYNQINSDVRTRSRKKMRGDFN 867
             R +   + T+     +D  ++I  +  +Q++++ K +  LQEKSD+E + +  +   +L+ E T VK N++  I    V EQR+KE+L+++WN  +++P+ + +  + +  +     ++KR++H+ YL++ N+KG V L     +EYY  AL        N     PI+V +A   +P       R  E+R  LRC+TG   + KDL+ ++LPP+PLVPLGR G D L W  MP + I S  R  SR++MRG FN
Sbjct:   45 GRKSRQGAETTNGDTGMDSQSLIGQTMRVQDWLNEKTVKGLQEKSDIETREARKLYEPLLQTEDTFVK-NLEEYITYKDVMEQRKKEMLHKKWNDRVFEPLRKNIIDAMDSDDWPELDRRKRELHKQYLEFTNQKGHVFLDTMDPEEYYAQAL--------NGHRPAPIKVSTAALRDPLLSQGRQRSAEDRTILRCITGYSYTDKDLEQVKLPPLPLVPLGRHGTDSLKWLEMPLHNIESTPRMASRRRMRGTFN 291
[Close]
BLAST of UPF0638 protein B vs. TrEMBL
Match: A0A2B4SV41 (Protein FAM228B OS=Stylophora pistillata OX=50429 GN=Fam228b PE=4 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.649e-30
Identity = 81/232 (34.91%), Postives = 138/232 (59.48%), Query Frame = 1 
Query:  181 HSEHLQNYISSKAILQLQEKSDLEVQASNSIVGEILEREKTIVKDNVDNIIKEYQVNEQRRKEVLNRRWNRNIYKPISERLDQSRNDSNLDIFIQKKRDIHQNYLDYVNRKGFVSLSEYCSDEYYPYALFSKQNSVYNSKSNTPIRVQSA---NPTSVDENSRIEEERCQLRCLTGSILSKKDXXXXXXXXXXXXXXXXXXVDCLAWSYMPYNQINSDVRTRSRKKMRGDFN 867
            H+  +Q++++ K++  +QE++D E +A+  +   +L+ E T VKD VD+ I + +  ++R+KE+L ++W+  +Y P+ E++D+  N  N     ++KR I++ YLDY N+KG V L     +EY P  L        N+    P++  +    +P      +R+EE+R  +RC+TG  +S K ++ + LPP PLVPLGR G +C  W  M  + I+S VR RSR +M+G +N
Sbjct:   71 HTFRIQSWLNEKSVRNIQERTDFESRATKKMYTTLLDNENTFVKD-VDSFIDQKEALDRRKKEMLFKKWSEQVYSPVREKIDEEMNGPNYRHLDRRKRTIYKKYLDYSNKKGVVFLDVMSPEEYDPLVL--------NANRPAPLKAITQKLDDPLLSQGTTRLEEDRTMVRCITGDTMSDKQIEEIHLPPAPLVPLGRHGTECNTWLRMQLHDIDSGVRKRSRLRMKGLYN 293
[Close]
BLAST of UPF0638 protein B vs. TrEMBL
Match: A0A433T605 (Uncharacterized protein OS=Elysia chlorotica OX=188477 GN=EGW08_015228 PE=4 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.712e-29
Identity = 94/292 (32.19%), Postives = 164/292 (56.16%), Query Frame = 1 
Query:  103 KNSRNNSAMSVTSCASFKLDPTAMIKHSEHLQNYISSKAILQLQEKSDLEVQASNSIVGEILEREKTIVKDNVDNIIKEYQVNEQRRKEVLNRRWNRNIYKPISERLDQSRNDSNLDIFIQKKRDIHQNYLDYVNRKGFVSLSEYCSDEYYPYALFSKQNSVYNSKSNTPIRVQSAN---PTSVDENSRIEEERCQLRCLTGSILSKKDXXXXXXXXXXXXXXXXXXVDCLAWSYMPYNQINSDVRTRSRKKMRG-----DFNYGSAFASLTETSKV----FQLPTRYAVSE 942
            K S   ++ +  S ++  +D   ++  S  +Q++++ K I +LQE +D E QA+  +    LE E T +K+  D +  +  V+  R+KEVL++RW+  +Y+PI +++ ++ + ++     ++KR++H+ +L++VN++GFV L +   +EYY  AL        N     PI++++ N   P       R EE+R  +RC TG   S  DL  +RLPP+PL+PLGR G++   W  MP   I S VR RSR +M G     D ++ +A++ +   +K+     Q+P R A +E
Sbjct:   47 KKSDIRASSAPDSASTVSMDSKGLLSQSVRVQDWLNEKTIKELQEGTDHESQAAKKLYAPFLETESTFIKEIGDRLAYKELVD-LRKKEVLHKRWSDQVYEPIRKKILEAIDGADWHHLDRRKREMHKQFLEHVNKRGFVFLEDDDREEYYAQAL--------NGHRPNPIKIRTENLSDPLLTLSRQRSEEDRTIMRCTTGQNYSDNDLDQVRLPPLPLIPLGRHGINSCRWLEMPLTNIESPVRERSRLRMLGNSTKTDIDF-AAWSKMGRDAKIVARELQIPRRKAFAE 328
[Close]
BLAST of UPF0638 protein B vs. TrEMBL
Match: A0A1S3KGX9 (protein FAM228B isoform X1 OS=Lingula unguis OX=7574 GN=LOC106181908 PE=4 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.763e-28
Identity = 81/242 (33.47%), Postives = 139/242 (57.44%), Query Frame = 1 
Query:  157 LDPTAMIKHSEHLQNYISSKAILQLQEKSDLEVQASNSIVGEILEREKTIVKDNVDNIIKEYQVNEQRRKEVLNRRWNRNIYKPISERLDQSRNDSNLDIFIQKKRDIHQNYLDYVNRKGFVSLSEYCSDEYYPYALFSKQNSVYNSKS----NTPIRVQSANPTSVDENSRIEEERCQLRCLTGSILSKKDXXXXXXXXXXXXXXXXXXVDCLAWSYMPYNQINSDVRTRSRKKMRGDFNY 870
            +D  ++I H+  LQ+++S K++ ++QE++D+E + +  +   +L+ E   VKD +D  +   +V++ R+KE+L+++WN  +++PI + + +           ++KR I++ YL++ N+KG V L      EY P  L    N    ++       P+R    +P       R EE+R  LRC TG   + KD++ ++LPP+PLVPLGR G +C  W  MP + I S VR  SR +MRGD+N+
Sbjct:   65 VDSDSLIGHTLKLQDWLSEKSVKEIQERADIEARDTKKMYNSVLDVEDNFVKD-IDAFLAAKEVHDLRKKEILHKKWNDQVHEPIRKEVIKEMGGPAYKQLDRRKRQIYKEYLEFTNQKGHVFLDTVDPAEYCPLGLHV--NRPLGTRGIHAETKPLR----DPLLSQAKERAEEDRTILRCTTGITYTDKDIEKIKLPPLPLVPLGRHGTECKTWLAMPMHDIESPVRKASRGRMRGDYNH 299
[Close]
BLAST of UPF0638 protein B vs. TrEMBL
Match: A7SC67 (Predicted protein (Fragment) OS=Nematostella vectensis OX=45351 GN=v1g112977 PE=4 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 6.347e-27
Identity = 82/231 (35.50%), Postives = 139/231 (60.17%), Query Frame = 1 
Query:  193 LQNYISSKAILQLQEKSDLEVQASNSIVGEILEREKTIVKDNVDNIIKEYQVNEQRRKEVLNRRWNRNIYKPISERLDQSRNDSNLDIFIQKKRDIHQNYLDYVNRKGFVSLSEYCSDEYYPYALFSKQNSVYNSKSNTPIRVQSANPTSVDE------NSRIEEERCQLRCLTGSILSKKDXXXXXXXXXXXXXXXXXXVDCLAWSYMPYNQINSDVRTRSRKKMRGDFN 867
            +QN+++ K++  +QE++D E +A+ ++   +LE E + VK+ VD  +    + ++R+K++L+++W+  +Y P+ E++DQ  N  N     ++KR I+++YLDY N KG V L     +EY P AL        N     P++   A  T +D+       +R EE+R +L C+TG  +  K+++++R PP PLVPLGRQG +C  W  M  + I+SDVR RS  +M+G +N
Sbjct:   12 IQNWLNEKSVRGIQERTDFESRATRNMYTTLLENEDSFVKE-VDGYLHYKSMLDRRKKQLLHKKWSERVYFPVKEQIDQEMNGPNYKNLDKRKRTIYKHYLDYSNNKGVVFLDVMSPEEYDPLAL--------NKNRPGPLK---AITTKLDDCLISQGATRSEEDRIELGCITGERMPDKEIENIRKPPPPLVPLGRQGTECKTWLRMQLHDIDSDVRMRSGLRMKGTYN 230
[Close]
BLAST of UPF0638 protein B vs. Ensembl Cavefish
Match: ENSAMXT00000041201.1 (pep primary_assembly:Astyanax_mexicanus-2.0:3:25037552:25044118:-1 gene:ENSAMXG00000036485.1 transcript:ENSAMXT00000041201.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 59.6918 bits (143), Expect = 5.934e-10
Identity = 50/194 (25.77%), Postives = 93/194 (47.94%), Query Frame = 1 
Query:  127 MSVTSCASFKLDPTAMIKHSEHLQNYISSKAILQLQEKSDLEVQASNSIVGEILEREKTIVKDNVDNIIKEYQVNEQRRKEVLNRRWNRNIYKPISERLDQSRNDSNLDIFIQKKRDIHQNYLDYVNRKGFVSLSEYCSDEYYPYAL-FSKQNSVYNSKSNTPIRVQSANPTSVDENSRIEEERCQLRCLTGSI 705
            MSV    S     T +   ++ +Q +     + +LQE+   E + ++ I   +L+ E   +KD ++  +        R++ +L+++W   +++PI + + +    ++     +  R +  +Y+DY N KGFVSL  Y S EY P+ L   K NS    + +TP      +P  +   SR+ E R   RC +G +
Sbjct:    1 MSVAGSDSATRAVTHLKTSADLMQTHFPC-TVKKLQEQFFSEQREADLITQPLLDTENRFIKD-LELYLDHRDKLALRKRGLLHKQWTDCVWQPIQQSIKRRFTHASFK-GAKPIRMMMTHYIDYCNTKGFVSLESYDSREYDPFLLRICKPNSY---QVSTP---SLKDPLCLQSRSRMRENRAITRCQSGCV 185
[Close]
BLAST of UPF0638 protein B vs. Ensembl Cavefish
Match: ENSAMXT00000044494.1 (pep primary_assembly:Astyanax_mexicanus-2.0:3:25037552:25044880:-1 gene:ENSAMXG00000036485.1 transcript:ENSAMXT00000044494.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 59.6918 bits (143), Expect = 5.934e-10
Identity = 50/194 (25.77%), Postives = 93/194 (47.94%), Query Frame = 1 
Query:  127 MSVTSCASFKLDPTAMIKHSEHLQNYISSKAILQLQEKSDLEVQASNSIVGEILEREKTIVKDNVDNIIKEYQVNEQRRKEVLNRRWNRNIYKPISERLDQSRNDSNLDIFIQKKRDIHQNYLDYVNRKGFVSLSEYCSDEYYPYAL-FSKQNSVYNSKSNTPIRVQSANPTSVDENSRIEEERCQLRCLTGSI 705
            MSV    S     T +   ++ +Q +     + +LQE+   E + ++ I   +L+ E   +KD ++  +        R++ +L+++W   +++PI + + +    ++     +  R +  +Y+DY N KGFVSL  Y S EY P+ L   K NS    + +TP      +P  +   SR+ E R   RC +G +
Sbjct:    1 MSVAGSDSATRAVTHLKTSADLMQTHFPC-TVKKLQEQFFSEQREADLITQPLLDTENRFIKD-LELYLDHRDKLALRKRGLLHKQWTDCVWQPIQQSIKRRFTHASFK-GAKPIRMMMTHYIDYCNTKGFVSLESYDSREYDPFLLRICKPNSY---QVSTP---SLKDPLCLQSRSRMRENRAITRCQSGCV 185
[Close]
BLAST of UPF0638 protein B vs. Ensembl Nematostella
Match: EDO38688 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SC67])

HSP 1 Score: 116.701 bits (291), Expect = 8.777e-31
Identity = 82/231 (35.50%), Postives = 139/231 (60.17%), Query Frame = 1 
Query:  193 LQNYISSKAILQLQEKSDLEVQASNSIVGEILEREKTIVKDNVDNIIKEYQVNEQRRKEVLNRRWNRNIYKPISERLDQSRNDSNLDIFIQKKRDIHQNYLDYVNRKGFVSLSEYCSDEYYPYALFSKQNSVYNSKSNTPIRVQSANPTSVDE------NSRIEEERCQLRCLTGSILSKKDXXXXXXXXXXXXXXXXXXVDCLAWSYMPYNQINSDVRTRSRKKMRGDFN 867
            +QN+++ K++  +QE++D E +A+ ++   +LE E + VK+ VD  +    + ++R+K++L+++W+  +Y P+ E++DQ  N  N     ++KR I+++YLDY N KG V L     +EY P AL        N     P++   A  T +D+       +R EE+R +L C+TG  +  K+++++R PP PLVPLGRQG +C  W  M  + I+SDVR RS  +M+G +N
Sbjct:   12 IQNWLNEKSVRGIQERTDFESRATRNMYTTLLENEDSFVKE-VDGYLHYKSMLDRRKKQLLHKKWSERVYFPVKEQIDQEMNGPNYKNLDKRKRTIYKHYLDYSNNKGVVFLDVMSPEEYDPLAL--------NKNRPGPLK---AITTKLDDCLISQGATRSEEDRIELGCITGERMPDKEIENIRKPPPPLVPLGRQGTECKTWLRMQLHDIDSDVRMRSGLRMKGTYN 230
[Close]
BLAST of UPF0638 protein B vs. Planmine SMEST
Match: SMESG000003269.1 (SMESG000003269.1)

HSP 1 Score: 548.895 bits (1413), Expect = 0.000e+0
Identity = 288/293 (98.29%), Postives = 291/293 (99.32%), Query Frame = 1 
Query:   91 MKTVKNSRNNSAMSVTSCASFKLDPTAMIKHSEHLQNYISSKAILQLQEKSDLEVQASNSIVGEILEREKTIVKDNVDNIIKEYQVNEQRRKEVLNRRWNRNIYKPISERLDQSRNDSNLDIFIQKKRDIHQNYLDYVNRKGFVSLSEYCSDEYYPYALFSKQNSVYNSKSNTPIRVQSANPTSVDENSRIEEERCQLRCLTGSILSKKDXXXXXXXXXXXXXXXXXXVDCLAWSYMPYNQINSDVRTRSRKKMRGDFNYGSAFASLTETSKVFQLPTRYAVSEASEGIDDVF 969
            MKTVKNSRNNSAMSVTSCASFKLDPTAMIKHSEHLQNYISSKAILQLQEKSDLEVQASNSIVGEILEREKTIVKDNVDNIIKEYQVNEQRRKEVLNRRWNRNIY+PI+ERLDQSRNDSNLDIFIQKKRDIHQNYLDYVNRKGFVSLSEYCSDEYYPYALFSKQNSVYNSKSNTPIRVQSANPTSVDEN RIEEERCQLRCLTGSILSKKDLQSLRLPPVPLVPLGRQGVDCLAWSYMP+NQINSDVRTRSRKKMRGDFNYGSAFASLTETSKVFQLPTRYAV EASEGIDDVF
Sbjct:    1 MKTVKNSRNNSAMSVTSCASFKLDPTAMIKHSEHLQNYISSKAILQLQEKSDLEVQASNSIVGEILEREKTIVKDNVDNIIKEYQVNEQRRKEVLNRRWNRNIYEPIAERLDQSRNDSNLDIFIQKKRDIHQNYLDYVNRKGFVSLSEYCSDEYYPYALFSKQNSVYNSKSNTPIRVQSANPTSVDENFRIEEERCQLRCLTGSILSKKDLQSLRLPPVPLVPLGRQGVDCLAWSYMPHNQINSDVRTRSRKKMRGDFNYGSAFASLTETSKVFQLPTRYAVLEASEGIDDVF 293
[Close]
BLAST of UPF0638 protein B vs. Planmine SMEST
Match: SMESG000003269.1 (SMESG000003269.1)

HSP 1 Score: 537.339 bits (1383), Expect = 0.000e+0
Identity = 282/288 (97.92%), Postives = 286/288 (99.31%), Query Frame = 1 
Query:  106 NSRNNSAMSVTSCASFKLDPTAMIKHSEHLQNYISSKAILQLQEKSDLEVQASNSIVGEILEREKTIVKDNVDNIIKEYQVNEQRRKEVLNRRWNRNIYKPISERLDQSRNDSNLDIFIQKKRDIHQNYLDYVNRKGFVSLSEYCSDEYYPYALFSKQNSVYNSKSNTPIRVQSANPTSVDENSRIEEERCQLRCLTGSILSKKDXXXXXXXXXXXXXXXXXXVDCLAWSYMPYNQINSDVRTRSRKKMRGDFNYGSAFASLTETSKVFQLPTRYAVSEASEGIDDVF 969
            N+RNNSAMSVTSCASFKLDPTAMIKHSEHLQNYISSKAILQLQEKSDLEVQASNSIVGEILEREKTIVKDNVDNIIKEYQVNEQRRKEVLNRRWNRNIY+PI+ERLDQSRNDSNLDIFIQKKRDIHQNYLDYVNRKGFVSLSEYCSDEYYPYALFSKQNSVYNSKSNTPIRVQSANPTSVDEN RIEEERCQLRCLTGSILSKKDLQSLRLPPVPLVPLGRQGVDCLAWSYMP+NQINSDVRTRSRKKMRGDFNYGSAFASLTETSKVFQLPTRYAV EASEGIDDVF
Sbjct:   16 NNRNNSAMSVTSCASFKLDPTAMIKHSEHLQNYISSKAILQLQEKSDLEVQASNSIVGEILEREKTIVKDNVDNIIKEYQVNEQRRKEVLNRRWNRNIYEPIAERLDQSRNDSNLDIFIQKKRDIHQNYLDYVNRKGFVSLSEYCSDEYYPYALFSKQNSVYNSKSNTPIRVQSANPTSVDENFRIEEERCQLRCLTGSILSKKDLQSLRLPPVPLVPLGRQGVDCLAWSYMPHNQINSDVRTRSRKKMRGDFNYGSAFASLTETSKVFQLPTRYAVLEASEGIDDVF 303
[Close]
BLAST of UPF0638 protein B vs. Planmine SMEST
Match: SMESG000003269.1 (SMESG000003269.1)

HSP 1 Score: 524.628 bits (1350), Expect = 0.000e+0
Identity = 276/281 (98.22%), Postives = 279/281 (99.29%), Query Frame = 1 
Query:  127 MSVTSCASFKLDPTAMIKHSEHLQNYISSKAILQLQEKSDLEVQASNSIVGEILEREKTIVKDNVDNIIKEYQVNEQRRKEVLNRRWNRNIYKPISERLDQSRNDSNLDIFIQKKRDIHQNYLDYVNRKGFVSLSEYCSDEYYPYALFSKQNSVYNSKSNTPIRVQSANPTSVDENSRIEEERCQLRCLTGSILSKKDXXXXXXXXXXXXXXXXXXVDCLAWSYMPYNQINSDVRTRSRKKMRGDFNYGSAFASLTETSKVFQLPTRYAVSEASEGIDDVF 969
            MSVTSCASFKLDPTAMIKHSEHLQNYISSKAILQLQEKSDLEVQASNSIVGEILEREKTIVKDNVDNIIKEYQVNEQRRKEVLNRRWNRNIY+PI+ERLDQSRNDSNLDIFIQKKRDIHQNYLDYVNRKGFVSLSEYCSDEYYPYALFSKQNSVYNSKSNTPIRVQSANPTSVDEN RIEEERCQLRCLTGSILSKKDLQSLRLPPVPLVPLGRQGVDCLAWSYMP+NQINSDVRTRSRKKMRGDFNYGSAFASLTETSKVFQLPTRYAV EASEGIDDVF
Sbjct:    1 MSVTSCASFKLDPTAMIKHSEHLQNYISSKAILQLQEKSDLEVQASNSIVGEILEREKTIVKDNVDNIIKEYQVNEQRRKEVLNRRWNRNIYEPIAERLDQSRNDSNLDIFIQKKRDIHQNYLDYVNRKGFVSLSEYCSDEYYPYALFSKQNSVYNSKSNTPIRVQSANPTSVDENFRIEEERCQLRCLTGSILSKKDLQSLRLPPVPLVPLGRQGVDCLAWSYMPHNQINSDVRTRSRKKMRGDFNYGSAFASLTETSKVFQLPTRYAVLEASEGIDDVF 281
The following BLAST results are available for this feature:
BLAST of UPF0638 protein B vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 2
Match NameE-valueIdentityDescription
FAM228B3.543e-624.12family with sequence similarity 228 member B [Sour... [more]
FAM228B3.543e-624.12family with sequence similarity 228 member B [Sour... [more]
back to top
BLAST of UPF0638 protein B vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of UPF0638 protein B vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of UPF0638 protein B vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
fam228a1.939e-1831.61family with sequence similarity 228 member A [Sour... [more]
fam228a3.508e-1831.61family with sequence similarity 228 member A [Sour... [more]
back to top
BLAST of UPF0638 protein B vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 1
Match NameE-valueIdentityDescription
kiaa01002.896e-1527.31KIAA0100 [Source:Xenbase;Acc:XB-GENE-955497][more]
back to top
BLAST of UPF0638 protein B vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 2
Match NameE-valueIdentityDescription
Fam228b7.170e-826.86family with sequence similarity 228, member B [Sou... [more]
Fam228b3.338e-726.63family with sequence similarity 228, member B [Sou... [more]
back to top
BLAST of UPF0638 protein B vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 2
Match NameE-valueIdentityDescription
sp|A6QQ68|F228B_BOVIN1.600e-1026.36Protein FAM228B OS=Bos taurus OX=9913 GN=FAM228B P... [more]
sp|Q497Q6|F228B_MOUSE5.015e-726.86Protein FAM228B OS=Mus musculus OX=10090 GN=Fam228... [more]
back to top
BLAST of UPF0638 protein B vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A210QQE24.253e-3034.38Uncharacterized protein OS=Mizuhopecten yessoensis... [more]
A0A2B4SV418.649e-3034.91Protein FAM228B OS=Stylophora pistillata OX=50429 ... [more]
A0A433T6052.712e-2932.19Uncharacterized protein OS=Elysia chlorotica OX=18... [more]
A0A1S3KGX91.763e-2833.47protein FAM228B isoform X1 OS=Lingula unguis OX=75... [more]
A7SC676.347e-2735.50Predicted protein (Fragment) OS=Nematostella vecte... [more]
back to top
BLAST of UPF0638 protein B vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
ENSAMXT00000041201.15.934e-1025.77pep primary_assembly:Astyanax_mexicanus-2.0:3:2503... [more]
ENSAMXT00000044494.15.934e-1025.77pep primary_assembly:Astyanax_mexicanus-2.0:3:2503... [more]
back to top
BLAST of UPF0638 protein B vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of UPF0638 protein B vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of UPF0638 protein B vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO386888.777e-3135.50Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
back to top
BLAST of UPF0638 protein B vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of UPF0638 protein B vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3
Match NameE-valueIdentityDescription
SMESG000003269.10.000e+098.29SMESG000003269.1[more]
SMESG000003269.10.000e+097.92SMESG000003269.1[more]
SMESG000003269.10.000e+098.22SMESG000003269.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30031945 ID=SMED30031945|Name=UPF0638 protein B|organism=Schmidtea mediterranea sexual|type=transcript|length=1081bp
TTATACTTCAAAATTTTAAATAGTTCATTATGAGAATTATTTTTGATATT
AATTATTGAAGATTCTGTTTAATAGTAAATAAATATTAAAATGAAAACTG
TAAAAAATAGCCGAAACAATTCGGCTATGAGTGTTACTTCGTGTGCCTCA
TTTAAATTAGATCCAACTGCTATGATCAAACATTCAGAACATTTACAAAA
CTATATTTCATCAAAAGCTATATTGCAGTTACAGGAAAAATCTGATCTTG
AAGTACAAGCATCCAACAGTATCGTTGGGGAAATACTTGAAAGAGAGAAA
ACGATTGTAAAGGATAACGTTGATAATATTATTAAAGAGTATCAAGTTAA
TGAACAAAGACGTAAAGAAGTGTTGAATAGACGTTGGAACAGAAACATCT
ATAAGCCAATATCCGAAAGGCTCGATCAATCAAGAAACGACAGTAATTTG
GACATTTTTATTCAGAAAAAGCGCGACATTCACCAGAATTATTTGGATTA
TGTCAACAGAAAGGGATTCGTGTCTCTCAGTGAATATTGTTCTGATGAAT
ATTATCCATATGCTTTATTTTCAAAACAAAATTCTGTCTATAATTCTAAA
TCGAATACTCCTATTCGAGTGCAATCAGCTAATCCAACTTCAGTTGATGA
AAATTCTCGTATTGAAGAAGAACGCTGTCAATTGAGATGCCTCACCGGGA
GCATACTTAGTAAAAAAGATCTCCAGTCATTAAGACTTCCACCCGTCCCA
TTAGTTCCACTAGGAAGGCAAGGAGTGGATTGCTTAGCATGGTCTTATAT
GCCCTATAATCAAATAAATAGTGACGTTCGAACACGTAGCCGAAAAAAAA
TGCGTGGAGATTTTAATTACGGTTCTGCCTTTGCCAGCTTGACAGAAACT
TCGAAGGTATTTCAATTGCCCACGAGATATGCCGTTTCGGAAGCCAGTGA
AGGAATAGATGACGTTTTCTGATTCAGATAAGTTATTGTAGAATTTGATT
GCTGATAATTTAAAATAAAATGTACTTCTTATTTTTGTTTTGCTGAATGT
GACGAATTAAAATGTTGAAATTTGAGTTGTG
back to top

protein sequence of SMED30031945-orf-1

>SMED30031945-orf-1 ID=SMED30031945-orf-1|Name=SMED30031945-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=294bp
MKTVKNSRNNSAMSVTSCASFKLDPTAMIKHSEHLQNYISSKAILQLQEK
SDLEVQASNSIVGEILEREKTIVKDNVDNIIKEYQVNEQRRKEVLNRRWN
RNIYKPISERLDQSRNDSNLDIFIQKKRDIHQNYLDYVNRKGFVSLSEYC
SDEYYPYALFSKQNSVYNSKSNTPIRVQSANPTSVDENSRIEEERCQLRC
LTGSILSKKDLQSLRLPPVPLVPLGRQGVDCLAWSYMPYNQINSDVRTRS
RKKMRGDFNYGSAFASLTETSKVFQLPTRYAVSEASEGIDDVF*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000020protonephridia
PLANA:0000034epidermis
PLANA:0000418head
PLANA:0003116parenchymal cell
Vocabulary: INTERPRO
TermDefinition
IPR040046FAM228
Vocabulary: cellular component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR28584:SF1FAMILY WITH SEQUENCE SIMILARITY 228, MEMBER Acoord: 26..262
IPR040046Protein FAM228PANTHERPTHR28584FAMILY NOT NAMEDcoord: 26..262