40S ribosomal protein S30

Overview


Name	40S ribosomal protein S30
Smed ID	SMED30031916
Length (bp)	485

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of 40S ribosomal protein S30 (SMED30031916) t-SNE clustered cells

Violin plots show distribution of expression levels for 40S ribosomal protein S30 (SMED30031916) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of 40S ribosomal protein S30 (SMED30031916) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for 40S ribosomal protein S30 (SMED30031916) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30031916

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 15

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
X1 cell	SMED30031916	h1SMcG0000255	SmedASXL_004471	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
pharynx	SMED30031916	h1SMcG0000255	dd_Smed_v4_126_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
protonephridia	SMED30031916	h1SMcG0000255	dd_Smed_v4_126_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
nervous system	SMED30031916	h1SMcG0000255	dd_Smed_v4_126_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
gut	SMED30031916	h1SMcG0000255	dd_Smed_v4_126_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
epidermis	SMED30031916	h1SMcG0000255	dd_Smed_v4_126_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cephalic ganglia	SMED30031916	h1SMcG0000255	dd_Smed_v4_126_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
muscle cell	SMED30031916	h1SMcG0000255	dd_Smed_v4_126_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
neoblast	SMED30031916	h1SMcG0000255	dd_Smed_v4_126_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchyma	SMED30031916	h1SMcG0000255	dd_Smed_v4_126_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchymal cell	SMED30031916	h1SMcG0000255	dd_Smed_v4_126_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
non-ciliated neuron	SMED30031916	h1SMcG0000255	dd_Smed_v4_126_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cilated neuron	SMED30031916	h1SMcG0000255	dd_Smed_v4_126_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
progenitor cell	SMED30031916	h1SMcG0000255	dd_Smed_v6_126_0	dd_Smed_v6	PMID:29674432 Plass et al., 2018
neoblast	SMED30031916	h1SMcG0000255	dd_Smed_v6_126_0	dd_Smed_v6	PMID:29674432 Plass et al., 2018

Note: Hover over icons to view figure legend

Homology

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BLAST of 40S ribosomal protein S30 vs. Ensembl Human
Match: FAU (FAU ubiquitin like and ribosomal protein S30 fusion [Source:HGNC Symbol;Acc:HGNC:3597])

HSP 1 Score: 122.479 bits (306), Expect = 7.650e-36
Identity = 72/133 (54.14%), Postives = 92/133 (69.17%), Query Frame = 3

Query:   60 MQIIINSVESFIHECTGDETVADLKVFLANKDQLPLTDIKCLLSGNILDNEIVLSSLGVNPTIDIEVS--LKGGKVHGSLARAGKVKNQTPKVDKQEKRKQPRGRAKRRMQYNRRFVNVVTTQGRKKGPNSNA 452
            MQ+ + + E    E TG ETVA +K  +A+ + +   D   LL+G  L++E  L   GV     +EV+  + GGKVHGSLARAGKV+ QTPKV KQEK+K+  GRAKRRMQYNRRFVNVV T G+KKGPN+N+
Sbjct:    1 MQLFVRAQELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGGKVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS 133

[Close]

Query:   60 MQIIINSVESFIHECTGDETVADLKVFLANKDQLPLTDIKCLLSGNILDNEIVLSSLGVNPTIDIEVS--LKGGKVHGSLARAGKVKNQTPKVDKQEKRKQPRGRAKRRMQYNRRFVNVVTTQGRKKGPNSNA 452
            MQ+ + + E    E TG ETVA +K  +A+ + +   D   LL+G  L++E  L   GV     +EV+  + GGKVHGSLARAGKV+ QTPKV KQEK+K+  GRAKRRMQYNRRFVNVV T G+KKGPN+N+
Sbjct:    1 MQLFVRAQELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGGKVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS 133

[Close]

Query:   60 MQIIINSVESFIHECTGDETVADLKVFLANKDQLPLTDIKCLLSGNILDNEIVLSSLGVNPTIDIEVS--LKGGKVHGSLARAGKVKNQTPKVDKQEKRKQPRGRAKRRMQYNRRFVNVVTTQGRKKGPNSNA 452
            MQ+ + + E    E TG ETVA +K  +A+ + +   D   LL+G  L++E  L   GV     +EV+  + GGKVHGSLARAGKV+ QTPKV KQEK+K+  GRAKRRMQYNRRFVNVV T G+KKGPN+N+
Sbjct:    1 MQLFVRAQELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGGKVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS 133

[Close]

BLAST of 40S ribosomal protein S30 vs. Ensembl Human
Match: FAU (FAU ubiquitin like and ribosomal protein S30 fusion [Source:HGNC Symbol;Acc:HGNC:3597])

HSP 1 Score: 94.3597 bits (233), Expect = 2.663e-25
Identity = 61/131 (46.56%), Postives = 75/131 (57.25%), Query Frame = 3

Query:   60 MQIIINSVESFIHECTGDETVADLKVFLANKDQLPLTDIKCLLSGNILDNEIVLSSLGVNPTIDIEVSLKGGKVHGSLARAGKVKNQTPKVDKQEKRKQPRGRAKRRMQYNRRFVNVVTTQGRKKGPNSNA 452
            MQ+ + + E    E TG ETVA +K                                    T+++   + GGKVHGSLARAGKV+ QTPKV KQEK+K+  GRAKRRMQYNRRFVNVV T G+KKGPN+N+
Sbjct:    1 MQLFVRAQELHTFEVTGQETVAQIKALT---------------------------------TLEVAGRMLGGKVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS 98

[Close]

BLAST of 40S ribosomal protein S30 vs. Ensembl Human
Match: FAU (FAU ubiquitin like and ribosomal protein S30 fusion [Source:HGNC Symbol;Acc:HGNC:3597])

HSP 1 Score: 79.337 bits (194), Expect = 2.909e-19
Identity = 52/108 (48.15%), Postives = 69/108 (63.89%), Query Frame = 3

Query:   60 MQIIINSVESFIHECTGDETVADLKVFLANKDQLPLTDIKCLLSGNILDNEIVLSSLGVNPTIDIEVS--LKGGKVHGSLARAGKVKNQTPKVDKQEKRKQPRGRAKR 377
            MQ+ + + E    E TG ETVA +K  +A+ + +   D   LL+G  L++E  L   GV     +EV+  + GGKVHGSLARAGKV+ QTPKV KQEK+K+  GRAKR
Sbjct:    1 MQLFVRAQELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGGKVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKR 108

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BLAST of 40S ribosomal protein S30 vs. Ensembl Celegans
Match: rps-30 (40S ribosomal protein S30 [Source:UniProtKB/TrEMBL;Acc:Q18231])

HSP 1 Score: 87.4261 bits (215), Expect = 1.216e-22
Identity = 58/133 (43.61%), Postives = 85/133 (63.91%), Query Frame = 3

Query:   60 MQIIINSVESFIHECTGDE--TVADLKVFLANKDQLPLTDIKCLLSGNILDNEIVLSSLGVNPTIDIEVSLKGGKVHGSLARAGKVKNQTPKVDKQEKRKQPRGRAKRRMQYNRRFVNVVTTQGRKKGPNSNA 452
            MQI +  +++  H    D   T++ +K  +   ++  ++    +LS  +   E  + SL    T+ +   L GGKVHGSLARAGKV+ QTPKVDKQ+K+K+ RGRA RR+QY RR+VNV +  G+K+GPNSN+
Sbjct:    1 MQIFLLGLDNTTHTLDVDASTTLSAIKGVIGAGEEFSISYGSKVLSEELTLGECQIESL---STLSVNGRLLGGKVHGSLARAGKVRAQTPKVDKQDKKKKKRGRAFRRVQYTRRYVNVASGPGKKRGPNSNS 130

[Close]

Query:   60 MQIIINSVESFIHECTGDE--TVADLKVFLANKDQLPLTDIKCLLSGNILDNEIVLSSLGVNPTIDIEVSLKGGKVHGSLARAGKVKNQTPKVDKQEKRKQPRGRAKRRMQYNRRFVNVVTTQGRKKGPNSNA 452
            MQI +  +++  H    D   T++ +K  +   ++  ++    +LS  +   E  + SL    T+ +   L GGKVHGSLARAGKV+ QTPKVDKQ+K+K+ RGRA RR+QY RR+VNV +  G+K+GPNSN+
Sbjct:    1 MQIFLLGLDNTTHTLDVDASTTLSAIKGVIGAGEEFSISYGSKVLSEELTLGECQIESL---STLSVNGRLLGGKVHGSLARAGKVRAQTPKVDKQDKKKKKRGRAFRRVQYTRRYVNVASGPGKKRGPNSNS 130

[Close]

Query:   60 MQIIINSVESFIHECTGDE--TVADLKVFLANKDQLPLTDIKCLLSGNILDNEIVLSSLGVNPTIDIEVSLKGGKVHGSLARAGKVKNQTPKVDKQEKRKQPRGRAKRRMQYNRRFVNVVTTQGRKKGPNSNA 452
            MQI +  +++  H    D   T++ +K  +   ++  ++    +LS  +   E  + SL    T+ +   L GGKVHGSLARAGKV+ QTPKVDKQ+K+K+ RGRA RR+QY RR+VNV +  G+K+GPNSN+
Sbjct:    1 MQIFLLGLDNTTHTLDVDASTTLSAIKGVIGAGEEFSISYGSKVLSEELTLGECQIESL---STLSVNGRLLGGKVHGSLARAGKVRAQTPKVDKQDKKKKKRGRAFRRVQYTRRYVNVASGPGKKRGPNSNS 130

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BLAST of 40S ribosomal protein S30 vs. Ensembl Fly
Match: RpS30 (gene:FBgn0038834 transcript:FBtr0346148)

HSP 1 Score: 96.6709 bits (239), Expect = 4.764e-26
Identity = 62/132 (46.97%), Postives = 86/132 (65.15%), Query Frame = 3

Query:   60 MQIIINSVESF-IHECTGDETVADLKVFLANKDQLPLTDIKCLLSGNILDNEIVLSSLGVNPTIDIEVSLKGGKVHGSLARAGKVKNQTPKVDKQEKRKQPRGRAKRRMQYNRRFVNVVTTQGRKKGPNSNA 452
            MQ+ +  +E+    E + D T+A +K  LA        +      G  L NE  +++L  +  +D+ + + GGKVHGSLARAGKVK QTPKV+KQEK+K+  GRAKRR+QYNRRFVN V   GR++GPN+N+
Sbjct:    1 MQLFVRGLETIEALEVSQDATIAGVKNQLAQIHGFNAEEFSLDCEGITLANETPVTALS-SFELDLNIPMLGGKVHGSLARAGKVKGQTPKVEKQEKKKKKTGRAKRRIQYNRRFVNFVQGFGRRRGPNANS 131

[Close]

BLAST of 40S ribosomal protein S30 vs. Ensembl Fly
Match: RpS30 (gene:FBgn0038834 transcript:FBtr0083969)

HSP 1 Score: 96.6709 bits (239), Expect = 4.764e-26
Identity = 62/132 (46.97%), Postives = 86/132 (65.15%), Query Frame = 3

Query:   60 MQIIINSVESF-IHECTGDETVADLKVFLANKDQLPLTDIKCLLSGNILDNEIVLSSLGVNPTIDIEVSLKGGKVHGSLARAGKVKNQTPKVDKQEKRKQPRGRAKRRMQYNRRFVNVVTTQGRKKGPNSNA 452
            MQ+ +  +E+    E + D T+A +K  LA        +      G  L NE  +++L  +  +D+ + + GGKVHGSLARAGKVK QTPKV+KQEK+K+  GRAKRR+QYNRRFVN V   GR++GPN+N+
Sbjct:    1 MQLFVRGLETIEALEVSQDATIAGVKNQLAQIHGFNAEEFSLDCEGITLANETPVTALS-SFELDLNIPMLGGKVHGSLARAGKVKGQTPKVEKQEKKKKKTGRAKRRIQYNRRFVNFVQGFGRRRGPNANS 131

[Close]

BLAST of 40S ribosomal protein S30 vs. Ensembl Fly
Match: RpS30 (gene:FBgn0038834 transcript:FBtr0083970)

HSP 1 Score: 96.6709 bits (239), Expect = 4.764e-26
Identity = 62/132 (46.97%), Postives = 86/132 (65.15%), Query Frame = 3

Query:   60 MQIIINSVESF-IHECTGDETVADLKVFLANKDQLPLTDIKCLLSGNILDNEIVLSSLGVNPTIDIEVSLKGGKVHGSLARAGKVKNQTPKVDKQEKRKQPRGRAKRRMQYNRRFVNVVTTQGRKKGPNSNA 452
            MQ+ +  +E+    E + D T+A +K  LA        +      G  L NE  +++L  +  +D+ + + GGKVHGSLARAGKVK QTPKV+KQEK+K+  GRAKRR+QYNRRFVN V   GR++GPN+N+
Sbjct:    1 MQLFVRGLETIEALEVSQDATIAGVKNQLAQIHGFNAEEFSLDCEGITLANETPVTALS-SFELDLNIPMLGGKVHGSLARAGKVKGQTPKVEKQEKKKKKTGRAKRRIQYNRRFVNFVQGFGRRRGPNANS 131

[Close]

BLAST of 40S ribosomal protein S30 vs. Ensembl Zebrafish
Match: faub (FAU ubiquitin like and ribosomal protein S30 fusion b [Source:ZFIN;Acc:ZDB-GENE-050417-416])

HSP 1 Score: 122.865 bits (307), Expect = 3.707e-36
Identity = 69/133 (51.88%), Postives = 88/133 (66.17%), Query Frame = 3

Query:   60 MQIIINSVESFIHECTGDETVADLKVFLANKDQLPLTDIKCLLSGNILDNEIVLSSLGVNPTIDIEVS--LKGGKVHGSLARAGKVKNQTPKVDKQEKRKQPRGRAKRRMQYNRRFVNVVTTQGRKKGPNSNA 452
            MQ+ +        +  G ETVA +K  +   + L   D    LSG  L+++ ++   G+     +EVS  L GGKVHGSLARAGKV+ QTPKVDKQEKRK+  GRAKRR+QYNRRFVNVV T G+KKGPN+N+
Sbjct:    1 MQLFVRGQSLHSVQLNGSETVAHIKAQIEALEGLACDDQIISLSGIPLEDDALICQSGIEEFNTLEVSSRLLGGKVHGSLARAGKVRGQTPKVDKQEKRKKRTGRAKRRIQYNRRFVNVVPTFGKKKGPNANS 133

[Close]

Query:   60 MQIIINSVESFIHECTGDETVADLKVFLANKDQLPLTDIKCLLSGNILDNEIVLSSLGVNPTIDIEVS--LKGGKVHGSLARAGKVKNQTPKVDKQEKRKQPRGRAKRRMQYNRRFVNVVTTQGRKKGPNSNA 452
            MQ+ +        +  G ETVA +K  +   + L   D    LSG  L+++ ++   G+     +EVS  L GGKVHGSLARAGKV+ QTPKVDKQEKRK+  GRAKRR+QYNRRFVNVV T G+KKGPN+N+
Sbjct:    1 MQLFVRGQSLHSVQLNGSETVAHIKAQIEALEGLACDDQIISLSGIPLEDDALICQSGIEEFNTLEVSSRLLGGKVHGSLARAGKVRGQTPKVDKQEKRKKRTGRAKRRIQYNRRFVNVVPTFGKKKGPNANS 133

[Close]

BLAST of 40S ribosomal protein S30 vs. Ensembl Zebrafish
Match: faub (FAU ubiquitin like and ribosomal protein S30 fusion b [Source:ZFIN;Acc:ZDB-GENE-050417-416])

HSP 1 Score: 122.094 bits (305), Expect = 6.530e-36
Identity = 69/133 (51.88%), Postives = 87/133 (65.41%), Query Frame = 3

Query:   60 MQIIINSVESFIHECTGDETVADLKVFLANKDQLPLTDIKCLLSGNILDNEIVLSSLGVNPTIDIEVS--LKGGKVHGSLARAGKVKNQTPKVDKQEKRKQPRGRAKRRMQYNRRFVNVVTTQGRKKGPNSNA 452
            MQ+ +           G ETVA +K  +   + L   D    LSG  L+++ ++   G+     +EVS  L GGKVHGSLARAGKV+ QTPKVDKQEKRK+  GRAKRR+QYNRRFVNVV T G+KKGPN+N+
Sbjct:    1 MQLFVRGQSLHSVHLNGSETVAHIKAQIEALEGLACDDQIISLSGIPLEDDALICQSGIEEFNTLEVSSRLLGGKVHGSLARAGKVRGQTPKVDKQEKRKKRTGRAKRRIQYNRRFVNVVPTFGKKKGPNANS 133

[Close]

BLAST of 40S ribosomal protein S30 vs. Ensembl Zebrafish
Match: faua (FAU ubiquitin like and ribosomal protein S30 fusion a [Source:ZFIN;Acc:ZDB-GENE-040426-1700])

HSP 1 Score: 110.538 bits (275), Expect = 2.189e-31
Identity = 70/133 (52.63%), Postives = 92/133 (69.17%), Query Frame = 3

Query:   60 MQIIINSVESFIHECTGDETVADLKVFLANKDQLPLTDIKCLLSGNILDNEIVLSSLGVNPTIDIEVS--LKGGKVHGSLARAGKVKNQTPKVDKQEKRKQPRGRAKRRMQYNRRFVNVVTTQGRKKGPNSNA 452
            MQ+ + +      E +G+ETV D+K  +   + + + D   LLSG  L ++  L + G+     +EVS  L GGKVHGSLARAGKV+ QTPKVDKQEK+K+  GRAKRR+QYNRRFVNVV T G+KKGPN+N+
Sbjct:    1 MQLFLRAQSLHTLEVSGNETVRDIKAHVEALEGVCVEDQLLLLSGAPLQDDSTLLNCGITEFCTLEVSGRLLGGKVHGSLARAGKVRGQTPKVDKQEKKKKKTGRAKRRIQYNRRFVNVVPTFGKKKGPNANS 133

[Close]

BLAST of 40S ribosomal protein S30 vs. Ensembl Xenopus
Match: fau (Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed [Source:NCBI gene;Acc:448719])

HSP 1 Score: 112.849 bits (281), Expect = 3.914e-32
Identity = 69/133 (51.88%), Postives = 90/133 (67.67%), Query Frame = 3

Query:   60 MQIIINSVESFIHECTGDETVADLKVFLANKDQLPLTDIKCLLSGNILDNEIVLSSLGVN--PTIDIEVSLKGGKVHGSLARAGKVKNQTPKVDKQEKRKQPRGRAKRRMQYNRRFVNVVTTQGRKKGPNSNA 452
            MQ+ +        E +G ET++ +K  +++ + +P  D   +L+G+ L  E  L   GV    T+DI   L GGKVHGSLARAGKV+ QTPKV KQEK+K+  GRAKRRMQYNRRFVNVV T G+KKGPN+N+
Sbjct:    1 MQLFVRGQSLHTLEVSGQETISQIKDQISSLEGIPSEDQVVVLAGSPLSEEHTLQQCGVCDLSTLDIVARLLGGKVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS 133

[Close]

BLAST of 40S ribosomal protein S30 vs. Ensembl Mouse
Match: Fau (Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived) [Source:MGI Symbol;Acc:MGI:102547])

HSP 1 Score: 120.553 bits (301), Expect = 3.098e-35
Identity = 72/133 (54.14%), Postives = 93/133 (69.92%), Query Frame = 3

Query:   60 MQIIINSVESFIHECTGDETVADLKVFLANKDQLPLTDIKCLLSGNILDNEIVLSSLGVNPTIDIEVS--LKGGKVHGSLARAGKVKNQTPKVDKQEKRKQPRGRAKRRMQYNRRFVNVVTTQGRKKGPNSNA 452
            MQ+ + + E    E TG ETVA +K  +A+ + +   D   LL+G+ L++E  L   GV     +EV+  + GGKVHGSLARAGKV+ QTPKV KQEK+K+  GRAKRRMQYNRRFVNVV T G+KKGPN+N+
Sbjct:    1 MQLFVRAQELHTLEVTGQETVAQIKDHVASLEGIAPEDQVVLLAGSPLEDEATLGQCGVEALTTLEVAGRMLGGKVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS 133

[Close]

Query:   60 MQIIINSVESFIHECTGDETVADLKVFLANKDQLPLTDIKCLLSGNILDNEIVLSSLGVNPTIDIEVS--LKGGKVHGSLARAGKVKNQTPKVDKQEKRKQPRGRAKRRMQYNRRFVNVVTTQGRKKGPNSNA 452
            MQ+ + + E    E TG ETVA +K  +A+ + +   D   LL+G+ L++E  L   GV     +EV+  + GGKVHGSLARAGKV+ QTPKV KQEK+K+  GRAKRRMQYNRRFVNVV T G+KKGPN+N+
Sbjct:    1 MQLFVRAQELHTLEVTGQETVAQIKDHVASLEGIAPEDQVVLLAGSPLEDEATLGQCGVEALTTLEVAGRMLGGKVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS 133

[Close]

Query:   60 MQIIINSVESFIHECTGDETVADLKVFLANKDQLPLTDIKCLLSGNILDNEIVLSSLGVNPTIDIEVS--LKGGKVHGSLARAGKVKNQTPKVDKQEKRKQPRGRAKRRMQYNRRFVNVVTTQGRKKGPNSNA 452
            MQ+ + + E    E TG ETVA +K  +A+ + +   D   LL+G+ L++E  L   GV     +EV+  + GGKVHGSLARAGKV+ QTPKV KQEK+K+  GRAKRRMQYNRRFVNVV T G+KKGPN+N+
Sbjct:    1 MQLFVRAQELHTLEVTGQETVAQIKDHVASLEGIAPEDQVVLLAGSPLEDEATLGQCGVEALTTLEVAGRMLGGKVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS 133

[Close]

Query:   60 MQIIINSVESFIHECTGDETVADLKVFLANKDQLPLTDIKCLLSGNILDNEIVLSSLGVNPTIDIEVS--LKGGKVHGSLARAGKVKNQTPKVDKQEKRKQPRGRAKRRMQYNRRFVNVVTTQGRKKGPNSNA 452
            MQ+ + + E    E TG ETVA +K  +A+ + +   D   LL+G+ L++E  L   GV     +EV+  + GGKVHGSLARAGKV+ QTPKV KQEK+K+  GRAKRRMQYNRRFVNVV T G+KKGPN+N+
Sbjct:    1 MQLFVRAQELHTLEVTGQETVAQIKDHVASLEGIAPEDQVVLLAGSPLEDEATLGQCGVEALTTLEVAGRMLGGKVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS 133

[Close]

Query:   60 MQIIINSVESFIHECTGDETVADLKVFLANKDQLPLTDIKCLLSGNILDNEIVLSSLGVNPTIDIEVS--LKGGKVHGSLARAGKVKNQTPKVDKQEKRKQPRGRAKRRMQYNRRFVNVVTTQGRKKGPNSNA 452
            MQ+ + + E    E TG ETVA +K  +A+ + +   D   LL+G+ L++E  L   GV     +EV+  + GGKVHGSLARAGKV+ QTPKV KQEK+K+  GRAKRRMQYNRRFVNVV T G+KKGPN+N+
Sbjct:    1 MQLFVRAQELHTLEVTGQETVAQIKDHVASLEGIAPEDQVVLLAGSPLEDEATLGQCGVEALTTLEVAGRMLGGKVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS 133

[Close]

BLAST of 40S ribosomal protein S30 vs. UniProt/SwissProt
Match: sp|Q9W6Y0|RS30_ORYLA (40S ribosomal protein S30 OS=Oryzias latipes OX=8090 GN=fau PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 7.336e-20
Identity = 42/59 (71.19%), Postives = 51/59 (86.44%), Query Frame = 3

Query:  276 KVHGSLARAGKVKNQTPKVDKQEKRKQPRGRAKRRMQYNRRFVNVVTTQGRKKGPNSNA 452
            KVHGSLARAGKV+ QTP VDK E++++  GRAKRR+QYNRRFVNVV T G+KKG N+N+
Sbjct:    1 KVHGSLARAGKVRGQTPNVDKHEEKEEEDGRAKRRIQYNRRFVNVVPTFGKKKGANANS 59

[Close]

BLAST of 40S ribosomal protein S30 vs. UniProt/SwissProt
Match: sp|P62864|RS30_RAT (40S ribosomal protein S30 OS=Rattus norvegicus OX=10116 GN=Fau PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.488e-19
Identity = 47/59 (79.66%), Postives = 53/59 (89.83%), Query Frame = 3

Query:  276 KVHGSLARAGKVKNQTPKVDKQEKRKQPRGRAKRRMQYNRRFVNVVTTQGRKKGPNSNA 452
            KVHGSLARAGKV+ QTPKV KQEK+K+  GRAKRRMQYNRRFVNVV T G+KKGPN+N+
Sbjct:    1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS 59

[Close]

BLAST of 40S ribosomal protein S30 vs. UniProt/SwissProt
Match: sp|P0C2F0|RS30_PONAB (40S ribosomal protein S30 OS=Pongo abelii OX=9601 GN=FAU PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.488e-19
Identity = 47/59 (79.66%), Postives = 53/59 (89.83%), Query Frame = 3

Query:  276 KVHGSLARAGKVKNQTPKVDKQEKRKQPRGRAKRRMQYNRRFVNVVTTQGRKKGPNSNA 452
            KVHGSLARAGKV+ QTPKV KQEK+K+  GRAKRRMQYNRRFVNVV T G+KKGPN+N+
Sbjct:    1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS 59

[Close]

BLAST of 40S ribosomal protein S30 vs. UniProt/SwissProt
Match: sp|P62863|RS30_PIG (40S ribosomal protein S30 OS=Sus scrofa OX=9823 GN=FAU PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.488e-19
Identity = 47/59 (79.66%), Postives = 53/59 (89.83%), Query Frame = 3

Query:  276 KVHGSLARAGKVKNQTPKVDKQEKRKQPRGRAKRRMQYNRRFVNVVTTQGRKKGPNSNA 452
            KVHGSLARAGKV+ QTPKV KQEK+K+  GRAKRRMQYNRRFVNVV T G+KKGPN+N+
Sbjct:    1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS 59

[Close]

BLAST of 40S ribosomal protein S30 vs. UniProt/SwissProt
Match: sp|P62867|RS30_MUSSI (40S ribosomal protein S30 OS=Mus spicilegus OX=10103 GN=Fau PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.488e-19
Identity = 47/59 (79.66%), Postives = 53/59 (89.83%), Query Frame = 3

Query:  276 KVHGSLARAGKVKNQTPKVDKQEKRKQPRGRAKRRMQYNRRFVNVVTTQGRKKGPNSNA 452
            KVHGSLARAGKV+ QTPKV KQEK+K+  GRAKRRMQYNRRFVNVV T G+KKGPN+N+
Sbjct:    1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS 59

[Close]

BLAST of 40S ribosomal protein S30 vs. TrEMBL
Match: A0A0R3W5B2 (40S ribosomal protein S30 OS=Taenia asiatica OX=60517 GN=TASK_LOCUS5297 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.395e-42
Identity = 71/133 (53.38%), Postives = 99/133 (74.44%), Query Frame = 3

Query:   60 MQIIINSVESFIHECTGDETVADLKVFLANKDQLPLTDIKCLLSGNILDNEIVLSSLGVNPTIDIEVSLKGGKVHGSLARAGKVKNQTPKVDKQEKRKQPRGRAKRRMQYNRRFVNVVTTQG-RKKGPNSNAK 455
            M +++ S ++ + + +  ++ ADLK  LA++D LPL DI+     ++LD++ VL+ L  +  ID+ V + GGKVHGSLARAGKV+ QTPKV+KQ+K+KQPRGRAKRRMQYNRRF  VV + G R++GPNSN K
Sbjct:    1 MHVVVRSFDTRLVDTSVCQSAADLKCLLASEDGLPLEDIQLYSGTSVLDSDTVLADLPADCAIDVSVGILGGKVHGSLARAGKVRGQTPKVEKQDKKKQPRGRAKRRMQYNRRFFAVVASTGLRRRGPNSNFK 133

[Close]

BLAST of 40S ribosomal protein S30 vs. TrEMBL
Match: A0A068Y837 (40S ribosomal protein S30 OS=Echinococcus multilocularis OX=6211 GN=EmuJ_000855200 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 2.628e-42
Identity = 72/133 (54.14%), Postives = 98/133 (73.68%), Query Frame = 3

Query:   60 MQIIINSVESFIHECTGDETVADLKVFLANKDQLPLTDIKCLLSGNILDNEIVLSSLGVNPTIDIEVSLKGGKVHGSLARAGKVKNQTPKVDKQEKRKQPRGRAKRRMQYNRRFVNVVTTQG-RKKGPNSNAK 455
            M I++ S  + + + +  ++ ADLK  LA++D LPL DI+     +ILD++ +L+ L  +  ID+ V + GGKVHGSLARAGKV+ QTPKV+KQ+K+KQPRGRAKRRMQYNRRF  VV + G R++GPNSN K
Sbjct:    1 MHIVVRSFGTRLVDTSVCQSAADLKCLLASEDGLPLEDIRLYSGTSILDSDTILADLPADCAIDVSVGVLGGKVHGSLARAGKVRGQTPKVEKQDKKKQPRGRAKRRMQYNRRFFAVVASTGLRRRGPNSNFK 133

[Close]

BLAST of 40S ribosomal protein S30 vs. TrEMBL
Match: A0A183N0F6 (40S ribosomal protein S30 OS=Schistosoma margrebowiei OX=48269 GN=SMRZ_LOCUS21781 PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 3.607e-42
Identity = 74/133 (55.64%), Postives = 97/133 (72.93%), Query Frame = 3

Query:   60 MQIIINSVESFIHECTGDETVADLKVFLANKDQLPLTDIKCLLSGNILDNEIVLSSLGVNPTIDIEVSLKGGKVHGSLARAGKVKNQTPKVDKQEKRKQPRGRAKRRMQYNRRFVNVV-TTQGRKKGPNSNAK 455
            M++I+ S ++ + +     T ADLK+ LANKD LPL +++    G+++ +   L SL  + +ID+ V   GGKVHGSLARAGKV+ QTPKV+KQEKRK PRGRAKRRMQYN+RFV VV  T GR++GPNSN K
Sbjct:    1 MKVIVKSFDTRVIDTNDCPTAADLKILLANKDNLPLDNLQLYNCGSLISDSQSLVSLSSDASIDVVVPALGGKVHGSLARAGKVRGQTPKVEKQEKRKSPRGRAKRRMQYNKRFVAVVQQTGGRRRGPNSNVK 133

[Close]

BLAST of 40S ribosomal protein S30 vs. TrEMBL
Match: A0A068WER2 (40S ribosomal protein S30 OS=Echinococcus granulosus OX=6210 GN=EgrG_000855200 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.580e-42
Identity = 70/133 (52.63%), Postives = 98/133 (73.68%), Query Frame = 3

Query:   60 MQIIINSVESFIHECTGDETVADLKVFLANKDQLPLTDIKCLLSGNILDNEIVLSSLGVNPTIDIEVSLKGGKVHGSLARAGKVKNQTPKVDKQEKRKQPRGRAKRRMQYNRRFVNVVTTQG-RKKGPNSNAK 455
            M +++ S  + + + +  ++ ADLK  LA++D LPL DI+     ++LD++ +L+ L  +  ID+ V + GGKVHGSLARAGKV+ QTPKV+KQ+K+KQPRGRAKRRMQYNRRF  VV + G R++GPNSN K
Sbjct:    1 MHVVVRSFGTRLVDTSVCQSAADLKCLLASEDGLPLEDIRLYSGTSVLDSDTILADLPADCAIDVSVGVLGGKVHGSLARAGKVRGQTPKVEKQDKKKQPRGRAKRRMQYNRRFFAVVASTGLRRRGPNSNFK 133

[Close]

BLAST of 40S ribosomal protein S30 vs. TrEMBL
Match: A0A0R3U6W8 (40S ribosomal protein S30 OS=Mesocestoides corti OX=53468 GN=MCOS_LOCUS2552 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 8.272e-42
Identity = 74/133 (55.64%), Postives = 96/133 (72.18%), Query Frame = 3

Query:   60 MQIIINSVESFIHECTGDETVADLKVFLANKDQLPLTDIKCLLSGNILDNEIVLSSLGVNPTIDIEVSLKGGKVHGSLARAGKVKNQTPKVDKQEKRKQPRGRAKRRMQYNRRFVNVVTTQG-RKKGPNSNAK 455
            MQ+++ S ++ I + +   + ADLK  LA++D LPL  I+     + LDN   LS+L  N  ID+ V + GGKVHGSLARAGKV+ QTPKV+KQ+K+KQPRGRAKRRMQYNRRF  VV + G R++GPNSN K
Sbjct:    1 MQLVVRSFDTRIIDTSTCRSAADLKCLLASQDGLPLESIQLFSGASELDNAADLSNLTENSAIDVIVPILGGKVHGSLARAGKVRGQTPKVEKQDKKKQPRGRAKRRMQYNRRFFAVVASTGLRRRGPNSNFK 133

[Close]

BLAST of 40S ribosomal protein S30 vs. Ensembl Cavefish
Match: faua (FAU ubiquitin like and ribosomal protein S30 fusion [Source:NCBI gene;Acc:103021738])

HSP 1 Score: 114.39 bits (285), Expect = 5.727e-33
Identity = 71/133 (53.38%), Postives = 92/133 (69.17%), Query Frame = 3

Query:   60 MQIIINSVESFIHECTGDETVADLKVFLANKDQLPLTDIKCLLSGNILDNEIVLSSLGVNPTIDIEVS--LKGGKVHGSLARAGKVKNQTPKVDKQEKRKQPRGRAKRRMQYNRRFVNVVTTQGRKKGPNSNA 452
            MQ+ + +      E TG ETV D+K  +   + L + D   +L+G  L++E  L + GV     +EV+  L GGKVHGSLARAGKV+ QTPKVDKQEK+K+  GRAKRR+QYNRRFVNVV T G+KKGPN+N+
Sbjct:    1 MQLFVRAQNLHTLEVTGQETVQDIKAHVQTLEGLSVEDQVLMLAGTPLEDEATLVNCGVLEHCTLEVAGRLLGGKVHGSLARAGKVRGQTPKVDKQEKKKKKTGRAKRRIQYNRRFVNVVPTFGKKKGPNANS 133

[Close]

BLAST of 40S ribosomal protein S30 vs. Ensembl Yeast
Match: RPS30B (Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S30, no bacterial homolog; RPS30B has a paralog, RPS30A, that arose from the whole genome duplication; protein abundance increases in response to DNA replication stress [Source:SGD;Acc:S000005708])

HSP 1 Score: 60.8474 bits (146), Expect = 9.716e-14
Identity = 37/59 (62.71%), Postives = 47/59 (79.66%), Query Frame = 3

Query:  276 KVHGSLARAGKVKNQTPKVDKQEKRKQPRGRAKRRMQYNRRFVNVVTTQGRKK---GPN 443
            KVHGSLARAGKVK+QTPKV+K EK K+P+GRA +R+ Y RRFVNV    G+++   GP+
Sbjct:    3 KVHGSLARAGKVKSQTPKVEKTEKPKKPKGRAYKRLLYTRRFVNVTLVNGKRRMNPGPS 61

[Close]

BLAST of 40S ribosomal protein S30 vs. Ensembl Yeast
Match: RPS30A (Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S30, no bacterial homolog; RPS30A has a paralog, RPS30B, that arose from the whole genome duplication [Source:SGD;Acc:S000004278])

HSP 1 Score: 60.8474 bits (146), Expect = 9.716e-14
Identity = 37/59 (62.71%), Postives = 47/59 (79.66%), Query Frame = 3

Query:  276 KVHGSLARAGKVKNQTPKVDKQEKRKQPRGRAKRRMQYNRRFVNVVTTQGRKK---GPN 443
            KVHGSLARAGKVK+QTPKV+K EK K+P+GRA +R+ Y RRFVNV    G+++   GP+
Sbjct:    3 KVHGSLARAGKVKSQTPKVEKTEKPKKPKGRAYKRLLYTRRFVNVTLVNGKRRMNPGPS 61

[Close]

BLAST of 40S ribosomal protein S30 vs. Ensembl Nematostella
Match: EDO33252 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SSR0])

HSP 1 Score: 120.168 bits (300), Expect = 1.175e-35
Identity = 70/133 (52.63%), Postives = 89/133 (66.92%), Query Frame = 3

Query:   60 MQIIINSVESFIHECTGDETVADLKVFLANKDQLPLTDIKCLLSGNILDNEIVLSS--LGVNPTIDIEVSLKGGKVHGSLARAGKVKNQTPKVDKQEKRKQPRGRAKRRMQYNRRFVNVVTTQGRKKGPNSNA 452
            MQ+ +           G ++V  +K  LA +D +P+ D   L +G  L++ + L    L    T+D+ V L GGKVHGSLARAGKVK+QTPKVD QEK+K+  GRAKRRMQYNRRFVNVV T GR++GPNSNA
Sbjct:    1 MQLFVRGQNLHTLNVEGCDSVLGIKQELALRDGIPVEDQVLLYAGRPLEDGMSLEECELFDQVTLDLGVRLLGGKVHGSLARAGKVKSQTPKVDAQEKKKKKTGRAKRRMQYNRRFVNVVQTFGRRRGPNSNA 133

[Close]

BLAST of 40S ribosomal protein S30 vs. Ensembl Medaka
Match: faua (FAU ubiquitin like and ribosomal protein S30 fusion [Source:NCBI gene;Acc:100049366])

HSP 1 Score: 112.849 bits (281), Expect = 2.264e-32
Identity = 69/133 (51.88%), Postives = 94/133 (70.68%), Query Frame = 3

Query:   60 MQIIINSVESFIHECTGDETVADLKVFLANKDQLPLTDIKCLLSGNILDNEIVLSSLGVNPTIDIEVS--LKGGKVHGSLARAGKVKNQTPKVDKQEKRKQPRGRAKRRMQYNRRFVNVVTTQGRKKGPNSNA 452
            MQ+ + +  +   E TG+ETV  +K  +   + + + D   +L+G  L+++  L S GV+    +EV+  L GGKVHGSLARAGKV+ QTPKVDKQEK+K+  GRAKRR+QYNRRFVNVV T G+KKGPN+N+
Sbjct:    1 MQLFLRAQNTHTLEVTGEETVGQIKAHVQTLEGILVEDQVLMLTGCPLEDDASLVSCGVSEFCTLEVAGRLLGGKVHGSLARAGKVRGQTPKVDKQEKKKKKTGRAKRRIQYNRRFVNVVPTFGKKKGPNANS 133

[Close]

BLAST of 40S ribosomal protein S30 vs. Planmine SMEST
Match: SMESG000065562.1 (SMESG000065562.1)

HSP 1 Score: 269.626 bits (688), Expect = 1.833e-94
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 3

Query:   60 MQIIINSVESFIHECTGDETVADLKVFLANKDQLPLTDIKCLLSGNILDNEIVLSSLGVNPTIDIEVSLKGGKVHGSLARAGKVKNQTPKVDKQEKRKQPRGRAKRRMQYNRRFVNVVTTQGRKKGPNSNAK 455
            MQIIINSVESFIHECTGDETVADLKVFLANKDQLPLTDIKCLLSGNILDNEIVLSSLGVNPTIDIEVSLKGGKVHGSLARAGKVKNQTPKVDKQEKRKQPRGRAKRRMQYNRRFVNVVTTQGRKKGPNSNAK
Sbjct:    1 MQIIINSVESFIHECTGDETVADLKVFLANKDQLPLTDIKCLLSGNILDNEIVLSSLGVNPTIDIEVSLKGGKVHGSLARAGKVKNQTPKVDKQEKRKQPRGRAKRRMQYNRRFVNVVTTQGRKKGPNSNAK 132

The following BLAST results are available for this feature:

BLAST of 40S ribosomal protein S30 vs. Ensembl Human
BLAST of 40S ribosomal protein S30 vs. Ensembl Celegans
BLAST of 40S ribosomal protein S30 vs. Ensembl Fly
BLAST of 40S ribosomal protein S30 vs. Ensembl Zebrafish
BLAST of 40S ribosomal protein S30 vs. Ensembl Xenopus
BLAST of 40S ribosomal protein S30 vs. Ensembl Mouse
BLAST of 40S ribosomal protein S30 vs. UniProt/SwissProt
BLAST of 40S ribosomal protein S30 vs. TrEMBL
BLAST of 40S ribosomal protein S30 vs. Ensembl Cavefish
BLAST of 40S ribosomal protein S30 vs. Ensembl Sea Lamprey
BLAST of 40S ribosomal protein S30 vs. Ensembl Yeast
BLAST of 40S ribosomal protein S30 vs. Ensembl Nematostella
BLAST of 40S ribosomal protein S30 vs. Ensembl Medaka
BLAST of 40S ribosomal protein S30 vs. Planmine SMEST

BLAST of 40S ribosomal protein S30 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
FAU	7.650e-36	54.14	FAU ubiquitin like and ribosomal protein S30 fusio...	[more]
FAU	7.650e-36	54.14	FAU ubiquitin like and ribosomal protein S30 fusio...	[more]
FAU	7.650e-36	54.14	FAU ubiquitin like and ribosomal protein S30 fusio...	[more]
FAU	2.663e-25	46.56	FAU ubiquitin like and ribosomal protein S30 fusio...	[more]
FAU	2.909e-19	48.15	FAU ubiquitin like and ribosomal protein S30 fusio...	[more]

BLAST of 40S ribosomal protein S30 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 3


Match Name	E-value	Identity	Description
rps-30	1.216e-22	43.61	40S ribosomal protein S30 [Source:UniProtKB/TrEMB...	[more]
rps-30	1.216e-22	43.61	40S ribosomal protein S30 [Source:UniProtKB/TrEMB...	[more]
rps-30	1.216e-22	43.61	40S ribosomal protein S30 [Source:UniProtKB/TrEMB...	[more]

BLAST of 40S ribosomal protein S30 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 3


Match Name	E-value	Identity	Description
RpS30	4.764e-26	46.97	gene:FBgn0038834 transcript:FBtr0346148	[more]
RpS30	4.764e-26	46.97	gene:FBgn0038834 transcript:FBtr0083969	[more]
RpS30	4.764e-26	46.97	gene:FBgn0038834 transcript:FBtr0083970	[more]

BLAST of 40S ribosomal protein S30 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 4


Match Name	E-value	Identity	Description
faub	3.707e-36	51.88	FAU ubiquitin like and ribosomal protein S30 fusio...	[more]
faub	3.707e-36	51.88	FAU ubiquitin like and ribosomal protein S30 fusio...	[more]
faub	6.530e-36	51.88	FAU ubiquitin like and ribosomal protein S30 fusio...	[more]
faua	2.189e-31	52.63	FAU ubiquitin like and ribosomal protein S30 fusio...	[more]

BLAST of 40S ribosomal protein S30 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 1


Match Name	E-value	Identity	Description
fau	3.914e-32	51.88	Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuS...	[more]

BLAST of 40S ribosomal protein S30 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Fau	3.098e-35	54.14	Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuS...	[more]
Fau	3.098e-35	54.14	Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuS...	[more]
Fau	3.098e-35	54.14	Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuS...	[more]
Fau	3.098e-35	54.14	Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuS...	[more]
Fau	3.098e-35	54.14	Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuS...	[more]

BLAST of 40S ribosomal protein S30 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q9W6Y0\|RS30_ORYLA	7.336e-20	71.19	40S ribosomal protein S30 OS=Oryzias latipes OX=80...	[more]
sp\|P62864\|RS30_RAT	3.488e-19	79.66	40S ribosomal protein S30 OS=Rattus norvegicus OX=...	[more]
sp\|P0C2F0\|RS30_PONAB	3.488e-19	79.66	40S ribosomal protein S30 OS=Pongo abelii OX=9601 ...	[more]
sp\|P62863\|RS30_PIG	3.488e-19	79.66	40S ribosomal protein S30 OS=Sus scrofa OX=9823 GN...	[more]
sp\|P62867\|RS30_MUSSI	3.488e-19	79.66	40S ribosomal protein S30 OS=Mus spicilegus OX=101...	[more]

BLAST of 40S ribosomal protein S30 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0R3W5B2	1.395e-42	53.38	40S ribosomal protein S30 OS=Taenia asiatica OX=60...	[more]
A0A068Y837	2.628e-42	54.14	40S ribosomal protein S30 OS=Echinococcus multiloc...	[more]
A0A183N0F6	3.607e-42	55.64	40S ribosomal protein S30 OS=Schistosoma margrebow...	[more]
A0A068WER2	7.580e-42	52.63	40S ribosomal protein S30 OS=Echinococcus granulos...	[more]
A0A0R3U6W8	8.272e-42	55.64	40S ribosomal protein S30 OS=Mesocestoides corti O...	[more]

BLAST of 40S ribosomal protein S30 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1


Match Name	E-value	Identity	Description
faua	5.727e-33	53.38	FAU ubiquitin like and ribosomal protein S30 fusio...	[more]

BLAST of 40S ribosomal protein S30 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of 40S ribosomal protein S30 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 2


Match Name	E-value	Identity	Description
RPS30B	9.716e-14	62.71	Protein component of the small (40S) ribosomal sub...	[more]
RPS30A	9.716e-14	62.71	Protein component of the small (40S) ribosomal sub...	[more]

BLAST of 40S ribosomal protein S30 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1


Match Name	E-value	Identity	Description
EDO33252	1.175e-35	52.63	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of 40S ribosomal protein S30 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 1


Match Name	E-value	Identity	Description
faua	2.264e-32	51.88	FAU ubiquitin like and ribosomal protein S30 fusio...	[more]

BLAST of 40S ribosomal protein S30 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1


Match Name	E-value	Identity	Description
SMESG000065562.1	1.833e-94	100.00	SMESG000065562.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30031916 ID=SMED30031916|Name=40S ribosomal protein S30|organism=Schmidtea mediterranea sexual|type=transcript|length=485bp
CTTAGAATGAAAATATTTGTTTAAATTACCAAAGAAAAGCTATATTAAAA
ATTTCAAAAATGCAAATTATTATTAATAGCGTTGAATCTTTTATCCATGA
ATGTACTGGCGATGAAACTGTTGCCGATTTAAAAGTTTTTTTGGCTAATA
AAGACCAACTTCCATTAACTGATATCAAATGTTTATTAAGTGGAAATATT
CTTGACAATGAAATTGTTTTGTCATCATTGGGTGTTAATCCAACCATTGA
TATTGAAGTATCACTTAAGGGAGGTAAAGTTCATGGTTCTTTAGCTCGTG
CTGGTAAAGTCAAAAATCAAACACCAAAAGTTGACAAACAAGAAAAAAGA
AAACAACCACGTGGTCGGGCAAAGAGACGTATGCAATATAACAGAAGATT
TGTTAATGTTGTAACTACTCAAGGTAGAAAGAAGGGACCTAACTCAAATG
CTAAGTGATTGAATAAATAAATTTGGATTTAATTT

protein sequence of SMED30031916-orf-1

>SMED30031916-orf-1 ID=SMED30031916-orf-1|Name=SMED30031916-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=133bp
MQIIINSVESFIHECTGDETVADLKVFLANKDQLPLTDIKCLLSGNILDN
EIVLSSLGVNPTIDIEVSLKGGKVHGSLARAGKVKNQTPKVDKQEKRKQP
RGRAKRRMQYNRRFVNVVTTQGRKKGPNSNAK*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000026	gut
PLANA:0000120	progenitor cell
PLANA:0000429	neoblast
PLANA:0002032	epidermal cell
PLANA:0002109	X1 cell
PLANA:0003116	parenchymal cell

Vocabulary: **INTERPRO**
Term	Definition
IPR029071	Ubiquitin-like_domsf
IPR006846	Ribosomal_S30
IPR000626	Ubiquitin-like_dom

Vocabulary: **molecular function**
Term	Definition
GO:0003735	structural constituent of ribosome
GO:0005515	protein binding

Vocabulary: **biological process**
Term	Definition
GO:0006412	translation

Vocabulary: **cellular component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.10.20.90		coord: 11..120 e-value: 2.5E-6 score: 29.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..150
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 131..150
None	No IPR available	PANTHER	PTHR12650	40S RIBOSOMAL PROTEIN S30/UBIQUITIN-LIKE PROTEIN FUBI	coord: 11..149
None	No IPR available	PANTHER	PTHR12650:SF15	40S RIBOSOMAL PROTEIN S30	coord: 11..149
None	No IPR available	CDD	cd01793	Ubl_FUBI	coord: 19..90 e-value: 1.02602E-12 score: 57.6771
IPR006846	Ribosomal protein S30	PFAM	PF04758	Ribosomal_S30	coord: 91..148 e-value: 4.5E-30 score: 103.6
IPR000626	Ubiquitin-like domain	PROSITE	PS50053	UBIQUITIN_2	coord: 19..88 score: 11.703
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	SSF54236	Ubiquitin-like	coord: 20..112

Main menu

40S ribosomal protein S30

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 15

Owlery

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