SJCHGC09680 protein

Overview
NameSJCHGC09680 protein
Smed IDSMED30031906
Length (bp)1124
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SJCHGC09680 protein (SMED30031906) t-SNE clustered cells

Violin plots show distribution of expression levels for SJCHGC09680 protein (SMED30031906) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SJCHGC09680 protein (SMED30031906) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SJCHGC09680 protein (SMED30031906) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30031906

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 6

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
head regionSMED30031906h1SMcG0005854 SmedASXL_008897SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
nervous systemSMED30031906h1SMcG0005854 dd_Smed_v4_16261_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30031906h1SMcG0005854 dd_Smed_v6_16261_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
head regionSMED30031906h1SMcG0005854 OX_Smed_1.0.19854ox_Smed_v2PMID:24238224
Kao et al., 2013		whole organism asexual adult RNA-sequencing evidence
oocyteSMED30031906h1SMcG0005854 Contig650GPL15192PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
vitelline glandSMED30031906h1SMcG0005854 Contig650GPL15192PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
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BLAST of SJCHGC09680 protein vs. TrEMBL
Match: A0A4Z2D1V3 (Uncharacterized protein OS=Schistosoma japonicum OX=6182 GN=EWB00_005417 PE=4 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 1.644e-91
Identity = 147/316 (46.52%), Postives = 197/316 (62.34%), Query Frame = 1 
Query:  241 QVVLINKTIKGKFYCPEPGQSKSLYHCCGHIGEQYCCDPQDTPGFKWGIAVAVTVGVLVILALGYTIQLFRACDKCYHECPICSVSNNDEEFQWETRWYSVSHEGNRYGVTFHSHKFAKYFMQKLELQYGPWNTANILRIKREDHDFVVLNIFFHDLFTPWFYTQGPIKNDEEWIKSDFSQMCNMVKEEIAVYP-----CRCCPFSNMKKASERTKF------------------DTAFHNNNNRPFNKYLKPWTKSTF-----RVSNSQSLSINKPIAATKT-----------VIVLEDIIEVYGNSKAIQTKRE 1071
            +++L+N    GKFYCP+P Q++ + +CCG +G+Q CC   DTPG +WGI + V V ++V L + YTIQ+FRACD+CYHECPI + + +D EFQW+TRWY+VSHEGNRYGVTFHS  FA  FM+ LE +YG WNTANIL+I+R+  +FV+LNIFFHDLFTPWFYTQGPIKNDEEWI++DF  +C+ V+  +AV P        C   +  K S++T                    +T+ H  N+        PWTK  +       S  + L+ N      KT           VI+LEDIIE  G  K +QT+++
Sbjct:  118 KLILLNS---GKFYCPQPNQTEDMKYCCGPLGKQTCCRITDTPGLRWGIPLGVIVSIIVFLTVSYTIQVFRACDRCYHECPIFTPTPSDAEFQWDTRWYTVSHEGNRYGVTFHSRLFANEFMKCLEAEYGRWNTANILKIQRDGQNFVILNIFFHDLFTPWFYTQGPIKNDEEWIRTDFKNICHTVQARLAVNPRFKWKLNKCFKHSTNKTSKQTNHSLINLNSPELINSHLDNKNTSHHLTNSNTVTTPWIPWTKVAYIPSLTETSVKKHLTRNTNKIKNKTKNDNKTNQLVNVIILEDIIECNGLDKGVQTQQK 430
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BLAST of SJCHGC09680 protein vs. TrEMBL
Match: A0A5K4F5A6 (Uncharacterized protein OS=Schistosoma mansoni OX=6183 PE=4 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 2.817e-90
Identity = 147/310 (47.42%), Postives = 193/310 (62.26%), Query Frame = 1 
Query:  241 QVVLINKTIKGKFYCPEPGQSKSLYHCCGHIGEQYCCDPQDTPGFKWGIAVAVTVGVLVILALGYTIQLFRACDKCYHECPICSVSNNDEEFQWETRWYSVSHEGNRYGVTFHSHKFAKYFMQKLELQYGPWNTANILRIKREDHDFVVLNIFFHDLFTPWFYTQGPIKNDEEWIKSDFSQMCNMVKEEIAVYP---CRCCPFSN---------MKKASERTKFDTAFHNNNNRPFN--------------KYLKPWTKSTF-----RVSNSQSLSINKPIAATK--TVIVLEDIIEVYGNSKAIQTKRE 1071
            +++LIN    GKFYCP+P QS+ + +CCG +G+Q CC   DTPG +WGI + V V V+V L + YTIQ+FRACD+CYHECPI + + ND EFQW+TRWY+VSHEGNRYGVTFHS  FA  FM+ LE +YG WNTANIL+I+R+  +FV+LNIFFHDLFTPWFYTQGPIKNDEEWI++DF  +C+ V+  +AV P    +   F N           ++S  T        N +R  N               Y+   T+++      R SN     +       +   VI+LEDIIE  G  K +QT ++
Sbjct:  113 KIILINS---GKFYCPQPNQSEDMKYCCGPLGKQICCKITDTPGLRWGIPLGVIVTVIVFLTVSYTIQVFRACDRCYHECPIFTPTPNDAEFQWDTRWYTVSHEGNRYGVTFHSRIFANEFMKCLEAEYGRWNTANILKIQRDGQNFVILNIFFHDLFTPWFYTQGPIKNDEEWIRTDFKNICHTVQARLAVNPRFKWKLNKFPNNSSNKTLRQTNQSSNNTNISDLDQKNIDRLSNPNTVTTPWTPWTKVAYIPSLTETSVKKNLTRNSNKSKYKMKNEYKPNQLVNVIILEDIIECNGLDKGVQTHQK 419
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BLAST of SJCHGC09680 protein vs. TrEMBL
Match: A0A4E0RGL4 (Uncharacterized protein OS=Fasciola hepatica OX=6192 GN=D915_003055 PE=4 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 2.151e-89
Identity = 147/322 (45.65%), Postives = 197/322 (61.18%), Query Frame = 1 
Query:  238 NQVVLINKTIKGKFYCPEPGQSKSLYHCCGHIGEQYCCDPQDTPGFKWGIAVAVTVGVLVILALGYTIQLFRACDKCYHECPICSVSNNDEEFQWETRWYSVSHEGNRYGVTFHSHKFAKYFMQKLELQYGPWNTANILRIKREDHDFVVLNIFFHDLFTPWFYTQGPIKNDEEWIKSDFSQMCNMVKEEIAVYPCRC---------------CP----------FSNMKKASERTKFDTAFHNNNNRPFNKYLKPWTKSTF-------RVSNSQSL----SINKPIAATK--------TVIVLEDIIEVYGNSKAIQTKRE 1071
             QV L+ K   GKF CPE   +  + +CCG +G QYCC   DTPG KWG+AV V V  +V L + YTIQ FR CD+CYHECPI  ++ + +EFQ +TRWY+VSHEGNRYGVTFHS  FAK FM+ LE +YG WNTANIL+I+R+  DFV+LNIFFHD+FTPWFYTQGPIKNDEEWI++DF  MC  V+ ++AV  C C               CP           S     S+ T+  ++   + N+  +K++ PWTK+++          N++SL    +  K +  T          VI+ E++IE  G  K +QT+++
Sbjct:   74 GQVELLLKR-SGKFQCPEQNHTNDMTYCCGELGAQYCCKLTDTPGLKWGVAVGVIVTFIVFLTVSYTIQFFRVCDRCYHECPIVGINPDLQEFQMDTRWYTVSHEGNRYGVTFHSRSFAKEFMECLEEKYGRWNTANILKIQRDGQDFVILNIFFHDVFTPWFYTQGPIKNDEEWIRTDFRAMCQAVRSKLAVRICLCLRLKQNHLSSSGSQQCPDNIQLESVVDTSAEIAKSDNTQQTSSAEKSCNKVMHKWV-PWTKASYTPPAFQDEAPNTKSLKRCSTRTKSMRKTDRNEAQSIVNVIIFEELIECNGLDKGVQTRQK 393
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BLAST of SJCHGC09680 protein vs. TrEMBL
Match: A0A3R7D7L3 (Uncharacterized protein OS=Clonorchis sinensis OX=79923 GN=CSKR_495s PE=4 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 7.124e-85
Identity = 131/272 (48.16%), Postives = 165/272 (60.66%), Query Frame = 1 
Query:  217 VELMTCVNQVVLINKTIKGKFYCPEPGQSKSLYHCCGHIGEQYCCDPQDTPGFKWGIAVAVTVGVLVILALGYTIQLFRACDKCYHECPICSVSNNDEEFQWETRWYSVSHEGNRYGVTFHSHKFAKYFMQKLELQYGPWNTANILRIKREDHDFVVLNIFFHDLFTPWFYTQGPIKNDEEWIKSDFSQMCNMVKEEIAVY----PCRCCPFSNMKKASERTKFDTAFHNNNNRPFNKYLK----------PWTKSTFRVSNS-QSLSINKP 987
            +E+    +Q   +     GKF CP P ++  + +CCG + EQ+CC  QDTPG KWG+AV V V ++V L + YTIQ+FR CD+CYHECPI     ++ EFQ  TRWY+VSHEGNRYGVTFHS  FA  FMQ+LE +YG WNTANIL+I+R+  DFV+L+IFFHDLFTPWFYTQGPIKNDEEWI++DF  +C  VK  + V       R C   N          D     N     +K  +          PWTK+ +    S QS     P
Sbjct:   73 IEIGQLGSQQTELGLIQSGKFACPRPNETSDMVYCCGPVREQHCCRLQDTPGLKWGVAVGVVVTLIVFLTVSYTIQVFRVCDRCYHECPIVGFGADETEFQLNTRWYTVSHEGNRYGVTFHSRGFANQFMQRLEERYGRWNTANILKIQRDGQDFVILSIFFHDLFTPWFYTQGPIKNDEEWIRTDFKSICQTVKANLRVTLWGPSWRSCSTENDPNEGNLRNEDLQLGTNKPESSDKLGRVPSRLARRWVPWTKAIYLPPTSNQSTGTESP 344
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BLAST of SJCHGC09680 protein vs. TrEMBL
Match: A0A4S2MCQ1 (Uncharacterized protein OS=Opisthorchis felineus OX=147828 GN=CRM22_002371 PE=4 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 1.960e-84
Identity = 117/200 (58.50%), Postives = 148/200 (74.00%), Query Frame = 1 
Query:  217 VELMTCVNQVVLINKTIKGKFYCPEPGQSKSLYHCCGHIGEQYCCDPQDTPGFKWGIAVAVTVGVLVILALGYTIQLFRACDKCYHECPICSVSNNDEEFQWETRWYSVSHEGNRYGVTFHSHKFAKYFMQKLELQYGPWNTANILRIKREDHDFVVLNIFFHDLFTPWFYTQGPIKNDEEWIKSDFSQMCNMVKEEIAV 816
            +E+    +Q + +     GKF CP P ++  + +CCG + EQ+CC  QDTPG KWG+AV V V ++V L + YTIQ+FR CD+CYHECPI     ++ EFQ  TRWY+VSHEGNRYGVTFHS  FA  FMQ+LE +YG WNTANIL+I+R+  DFV+L+IFFHDLFTPWFYTQGPIKNDEEWI++DF  +C  VK  + V
Sbjct:   84 IEIGQFGSQQIELGLIQSGKFVCPRPNETSEMIYCCGPVREQHCCRLQDTPGLKWGVAVGVVVTLIVFLTVSYTIQVFRVCDRCYHECPIIGFGEDETEFQLNTRWYTVSHEGNRYGVTFHSRGFANQFMQRLEERYGRWNTANILKIQRDGQDFVILSIFFHDLFTPWFYTQGPIKNDEEWIRTDFKSICQTVKANLRV 283
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BLAST of SJCHGC09680 protein vs. Planmine SMEST
Match: SMESG000000717.1 (SMESG000000717.1)

HSP 1 Score: 486.108 bits (1250), Expect = 8.468e-175
Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 1 
Query:  115 MPNLFSKKFLWKYLIFTLFYYQYQFTRIKQSLEEVELMTCVNQVVLINKTIKGKFYCPEPGQSKSLYHCCGHIGEQYCCDPQDTPGFKWGIAVAVTVGVLVILALGYTIQLFRACDKCYHECPICSVSNNDEEFQWETRWYSVSHEGNRYGVTFHSHKFAKYFMQKLELQYGPWNTANILRIKREDHDFVVLNIFFHDLFTPWFYTQGPIKNDEEWIKSDFSQMCNMVK 801
            MPNLFSKKFLWKYLIFTLFYYQYQFTRIKQSLEEVELMTCVNQVVLINKTIKGKFYCPEPGQSKSLYHCCGHIGEQYCCDPQDTPGFKWGIAVAVTVGVLVILALGYTIQLFRACDKCYHECPICSVSNNDEEFQWETRWYSVSHEGNRYGVTFHSHKFAKYFMQKLELQYGPWNTANILRIKREDHDFVVLNIFFHDLFTPWFYTQGPIKNDEEWIKSDFSQMCNMVK
Sbjct:    1 MPNLFSKKFLWKYLIFTLFYYQYQFTRIKQSLEEVELMTCVNQVVLINKTIKGKFYCPEPGQSKSLYHCCGHIGEQYCCDPQDTPGFKWGIAVAVTVGVLVILALGYTIQLFRACDKCYHECPICSVSNNDEEFQWETRWYSVSHEGNRYGVTFHSHKFAKYFMQKLELQYGPWNTANILRIKREDHDFVVLNIFFHDLFTPWFYTQGPIKNDEEWIKSDFSQMCNMVK 229
The following BLAST results are available for this feature:
BLAST of SJCHGC09680 protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SJCHGC09680 protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SJCHGC09680 protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SJCHGC09680 protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SJCHGC09680 protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SJCHGC09680 protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SJCHGC09680 protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SJCHGC09680 protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A4Z2D1V31.644e-9146.52Uncharacterized protein OS=Schistosoma japonicum O... [more]
A0A5K4F5A62.817e-9047.42Uncharacterized protein OS=Schistosoma mansoni OX=... [more]
A0A4E0RGL42.151e-8945.65Uncharacterized protein OS=Fasciola hepatica OX=61... [more]
A0A3R7D7L37.124e-8548.16Uncharacterized protein OS=Clonorchis sinensis OX=... [more]
A0A4S2MCQ11.960e-8458.50Uncharacterized protein OS=Opisthorchis felineus O... [more]
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BLAST of SJCHGC09680 protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SJCHGC09680 protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SJCHGC09680 protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SJCHGC09680 protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SJCHGC09680 protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SJCHGC09680 protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000000717.18.468e-175100.00SMESG000000717.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30031906 ID=SMED30031906|Name=SJCHGC09680 protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1124bp
AATCATGACACTTTCAGTGTTTTATCGTAATAAATAATATGAGGTTAATT
TGTTTTCTCTTATCGGTTTGCAATAAAGTCTGGTTTGTTAATCAGACAAA
TACTAATTGAAATTATGCCCAATTTGTTCTCAAAGAAATTTCTTTGGAAA
TATCTTATTTTTACTTTATTCTATTATCAGTATCAATTTACTCGCATCAA
ACAGTCCTTGGAAGAAGTTGAATTAATGACATGTGTTAATCAGGTCGTGT
TGATTAATAAAACAATAAAAGGGAAATTTTATTGTCCAGAACCGGGCCAA
AGTAAATCTCTTTATCATTGTTGTGGTCATATTGGTGAACAATATTGCTG
TGATCCACAAGACACGCCCGGATTCAAATGGGGAATTGCAGTTGCCGTCA
CTGTGGGGGTGCTGGTGATTCTTGCTTTAGGATATACTATCCAACTGTTC
AGAGCTTGTGACAAATGCTACCACGAATGTCCAATTTGTTCTGTGAGCAA
CAATGACGAAGAATTCCAATGGGAAACGCGATGGTATTCCGTGTCTCATG
AAGGAAACCGATACGGTGTCACTTTTCATAGTCACAAGTTTGCAAAATAT
TTCATGCAGAAATTAGAGTTACAATACGGACCATGGAACACGGCAAACAT
TCTCCGAATCAAAAGAGAAGACCATGATTTCGTCGTGTTGAATATATTTT
TCCACGATTTATTCACGCCTTGGTTCTATACTCAAGGCCCAATTAAAAAC
GATGAAGAATGGATCAAGTCAGATTTTAGTCAGATGTGCAACATGGTCAA
AGAAGAAATTGCCGTTTATCCTTGCCGCTGTTGTCCATTTTCAAATATGA
AAAAAGCGTCAGAAAGAACGAAATTCGATACTGCATTTCATAATAATAAC
AATCGCCCTTTTAACAAATATTTGAAACCTTGGACAAAATCAACTTTCCG
AGTTTCGAATTCACAGTCATTGTCTATTAACAAGCCAATTGCTGCGACTA
AAACTGTTATTGTTTTAGAAGATATTATAGAGGTCTATGGTAACTCAAAA
GCTATCCAAACAAAACGTGAAATTATGATATAAAAATTTTTTGATTTTTG
ACATATTTGTTTTGCTTGCTCTAC
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protein sequence of SMED30031906-orf-1

>SMED30031906-orf-1 ID=SMED30031906-orf-1|Name=SMED30031906-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=323bp
MPNLFSKKFLWKYLIFTLFYYQYQFTRIKQSLEEVELMTCVNQVVLINKT
IKGKFYCPEPGQSKSLYHCCGHIGEQYCCDPQDTPGFKWGIAVAVTVGVL
VILALGYTIQLFRACDKCYHECPICSVSNNDEEFQWETRWYSVSHEGNRY
GVTFHSHKFAKYFMQKLELQYGPWNTANILRIKREDHDFVVLNIFFHDLF
TPWFYTQGPIKNDEEWIKSDFSQMCNMVKEEIAVYPCRCCPFSNMKKASE
RTKFDTAFHNNNNRPFNKYLKPWTKSTFRVSNSQSLSINKPIAATKTVIV
LEDIIEVYGNSKAIQTKREIMI*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000074oocyte
PLANA:0000231vitelline gland
PLANA:0000418head
Vocabulary: cellular component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableTMHMMTMhelixcoord: 89..111