GCR137

Overview
NameGCR137
Smed IDSMED30031870
Length (bp)1540
Neoblast Clusters

Zeng et. al., 2018



 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30031870

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 1

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
testisSMED30031870SMESG000046231.1 SMESG000046224.1 GCR137smed_ncbi_20200123PMID:27163480
Saberi et al., 2016		whole organism adult hermaphrodite colorimetric in situ hybridization evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of GCR137 vs. TrEMBL
Match: A0A193KUU2 (GCR137 OS=Schmidtea mediterranea OX=79327 GN=gcr137 PE=2 SV=1)

HSP 1 Score: 725.317 bits (1871), Expect = 0.000e+0
Identity = 356/356 (100.00%), Postives = 356/356 (100.00%), Query Frame = 1 
Query:  322 MFYVVINSINLLFTGIAVNFLSKGLPWLGFTGIYIEYASPLSCKLSRFLQTFLNCSLINILLCEVIGRLIYLLSYGAHSPDLNFIIYILAGALFSSFFLCFPMIILYNLQKPDGRYDCIPDPEWPYVFIRWHAIHRMIFCDGLMQSLIILVLNGFIVFQLLKFRWTIASIQSFFTESNIVSDTLKQVIRLLNNNARDSILVVIHSTFVVLLFFVRSIVSYVVHKVIFIDFLDNTTVDGALLNYKWTAVEDFLTFLHILFISCYMWLYFFIIPTFRTYIRKSIKRISRKNQTVLRIADLFMLTDNEMAESPEVWKKSQDHLGNLDSVLFERVHQLEGALKYNSNQLLLKSHSQANES 1389
            MFYVVINSINLLFTGIAVNFLSKGLPWLGFTGIYIEYASPLSCKLSRFLQTFLNCSLINILLCEVIGRLIYLLSYGAHSPDLNFIIYILAGALFSSFFLCFPMIILYNLQKPDGRYDCIPDPEWPYVFIRWHAIHRMIFCDGLMQSLIILVLNGFIVFQLLKFRWTIASIQSFFTESNIVSDTLKQVIRLLNNNARDSILVVIHSTFVVLLFFVRSIVSYVVHKVIFIDFLDNTTVDGALLNYKWTAVEDFLTFLHILFISCYMWLYFFIIPTFRTYIRKSIKRISRKNQTVLRIADLFMLTDNEMAESPEVWKKSQDHLGNLDSVLFERVHQLEGALKYNSNQLLLKSHSQANES
Sbjct:    1 MFYVVINSINLLFTGIAVNFLSKGLPWLGFTGIYIEYASPLSCKLSRFLQTFLNCSLINILLCEVIGRLIYLLSYGAHSPDLNFIIYILAGALFSSFFLCFPMIILYNLQKPDGRYDCIPDPEWPYVFIRWHAIHRMIFCDGLMQSLIILVLNGFIVFQLLKFRWTIASIQSFFTESNIVSDTLKQVIRLLNNNARDSILVVIHSTFVVLLFFVRSIVSYVVHKVIFIDFLDNTTVDGALLNYKWTAVEDFLTFLHILFISCYMWLYFFIIPTFRTYIRKSIKRISRKNQTVLRIADLFMLTDNEMAESPEVWKKSQDHLGNLDSVLFERVHQLEGALKYNSNQLLLKSHSQANES 356
[Close]
BLAST of GCR137 vs. TrEMBL
Match: A0A193KUF3 (GCR139 OS=Schmidtea mediterranea OX=79327 GN=gcr139 PE=2 SV=1)

HSP 1 Score: 479.945 bits (1234), Expect = 2.926e-163
Identity = 235/437 (53.78%), Postives = 314/437 (71.85%), Query Frame = 1 
Query:   43 MTEKTYNDSFVYNLSVLYFFNSDMYTECAEKDLYMLYVGKGKANFNCDYLISFGGVTGLLTIPTXXXXXXXXXXXXXXXXXXXXXXAKQEIYGMFYVVINSINLLFTGIAVNFLSKGLPWLGFTGIYIEYASPLSCKLSRFLQTFLNCSLINILLCEVIGRLIYLLSYGAHSPDLNFIIYILAGALFSSFFLCFPMIILYNLQKPDGRYDCIPDPEWPYVFIRWHAIHRMIFCDGLMQSLIILVLNGFIVFQLLKFRWTIASIQSFFTESNIVSDTLKQVIRLLNNNARDSILVVIHSTFVVLLFFVRSIVSYVVHKVIFIDFLDNTTVDGALLNYKWTAVEDFLTFLHILFISCYMWLYFFIIPTFRTYIRKSIKRISRKNQTVLRIADLFMLTDNEMAESPEVWKKSQDHLGNLDSVLFERVHQLEGALKYNSNQ 1353
            M +  +N S   N S+ +F++ +MYT+CAE  L     GK +    CD  IS GG+  LLTIPT  +  + N+I+    L  +R SA+QEIYG+F+ V++++NLL+TGI +NF SKGLPWLGF G YIEYASPL CK S+F Q FLNC  IN+L CE +GRLI + S GAHSP    +IY L  A+  SF  C P+I LYNL++PDGRYDC+ DP WP   I+W AIHR+++CDGL+Q + IL  N   +  LLK R TI  I     ESNIVSDTLKQ+ RLL+N  RD+ +VVIHST +  LF ++S VSY +++V+++D+ DNTTV+G L+NYKWT++ED + FL+ L ISC+MWLY+FIIP FR++IR  IK++++ N +VLR+ D+FMLTDNEM E+P+ W+KSQ++L NLD VL+ER+ QLEGALK    Q
Sbjct:    1 MDDDYFNRSIYENRSLEFFYHREMYTQCAEHSLNF---GKKQPTTYCDNFISIGGIVALLTIPTVWVGFWGNVILFSALLLQIRRSARQEIYGVFFSVVDTMNLLYTGILINFGSKGLPWLGFQGFYIEYASPLMCKFSKFFQVFLNCYSINMLFCEALGRLIMIKSRGAHSPRYQHVIYFLCVAMAISFVQCSPIITLYNLRRPDGRYDCVLDPGWPRAIIQWFAIHRLLYCDGLIQCIFILFFNCINILGLLKLRATIEYIDHTAKESNIVSDTLKQITRLLHNIERDTQVVVIHSTIIAFLFLLKSSVSYEIYEVLYVDYTDNTTVNGVLINYKWTSIEDIVIFLYFLCISCHMWLYYFIIPPFRSWIRDVIKKVTKNNPSVLRVVDMFMLTDNEMGETPDQWRKSQNYLQNLDPVLYERIRQLEGALKQTDVQ 434
[Close]
BLAST of GCR137 vs. TrEMBL
Match: A0A193KUN9 (GCR128 OS=Schmidtea mediterranea OX=79327 GN=gcr128 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 1.161e-52
Identity = 138/435 (31.72%), Postives = 221/435 (50.80%), Query Frame = 1 
Query:   88 VLYFFNSDMYTECAEKDLYMLYVGKGKANFNCDYLISFGGVTGLLTIPTXXXXXXXXXXXXXXXXXXXXXXAKQEIYGMFYVVINSINLLFTGIAVNFLSKGLPWLGFTGIYIEYASPLSCKLSRFLQTFLNCSLINILLCEVIGRLIYLLSYGAHSPDLNFIIYILAGALFSSFFLCFPMIILYNLQKPDGRYDCIPDPEWPYVFIRWHAIHRMIFCDGLMQSLIILVLNGFIVFQLLKFRWTIASIQSFFTESNIVSDTLKQVIRLLNNNARDSILVVIHSTFVVLLFFVRSIVSYVVHKVIFIDFLDNTTVDGALLNYKWTAVEDFLTFLHILFISCYMWLYFFIIPTFRTYIRKSIKRISRKNQTVLRIADLFMLTDNEMAESPEVWKKSQD-HLGNLDSVLFERVHQLEGALKYNSNQLLLKSHSQANES 1389
            + YF+NS+MY ECA+   + L      A   C+  I  GG   L++IP     I  N+ +G  F   ++     EI+ + + ++ ++ L+F  +  +FLSKG+PWLGFTG+Y+ Y S LSCKL  F   FL+   +N+LL E   R + L   G       F+I+ +   +  SF    P+ ++++L   DGRYDC  D ++P+  ++W  IH  +FC+GL Q+LII  LN F  +       TI +IQ+   E  + S  L ++   L  +  D+   ++H+T    +  +++I S  +    F  + DNTTV+G +  Y    +    + L  LF S + WLYFF    FR  I+  I   + +++ +  + D FM     M +S +   K +D  + NL  VL+ER+   +G  K    +    S S ANE 
Sbjct:   16 IQYFYNSEMYLECAD---WALEKRNNTAIQYCNNFIFIGGCFALMSIPIVWCGILGNLTLGLAFAKYIKGIGNHEIFVVAFAIVETLALIFI-VLFDFLSKGVPWLGFTGVYVLYKSTLSCKLFSFAGIFLDSLSVNLLLGESFHRFLILKFKGGIEIQREFVIFGVLVIIIFSFIQSAPLTVIFSLWLIDGRYDCEIDCQFPWPIVQWTGIHFGLFCNGLFQTLIIFFLNSFSWYYWYVLYHTIHTIQTATNEYRLSSKILDEICNSLTVSLDDAFCTLVHTTVGAAILNIKAIFSLKIFYEFFSVYEDNTTVEGVVYMYYLRTLGQIFSTLFYLFESYHFWLYFFCNSNFRQLIKTKIMMFNPESERLSNVIDQFM-----MGDSVKKTAKMEDLKMHNL--VLYERIRNFDGK-KPMRRRGTTHSKSTANEQ 438
[Close]
BLAST of GCR137 vs. TrEMBL
Match: A0A3P7P5P6 (Uncharacterized protein OS=Dibothriocephalus latus OX=60516 GN=DILT_LOCUS9227 PE=4 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.432e-42
Identity = 112/383 (29.24%), Postives = 190/383 (49.61%), Query Frame = 1 
Query:  190 LISFGGVTGLLTIPTXXXXXXXXXXXXXXXXXXXXXXAKQEIYGMFYVVINSINLLFTGIAVNFLSKGLPWLGFTGIYIEYASPLSCKLSRFLQTFLNCSLINILLCEVIGRLIYLLSYGAHSPDLNFIIYILAGALFSSFFLCFPMIILYNLQKPDGRYDCIPDPEWPYVFIRWHAIHRMIFCDGLMQSLIILVLNGFIVFQLLKFRWTIASIQSFFTESNIVSDTLKQVIRLLNNNARDSILVVIHSTFVVLLFFVRSIVSYVVHKVIFIDFLDNTTVDGALLNYKWTAVEDFLTFLHILFISCYMWLYFFIIPTFRTYI----RKSIKRISRKNQTVLRIADLFMLTDNEMAESPEVWKKSQDHLGNLDSVLFERVHQLE 1326
            +++ GGV  LL +PT +  +   + +   F   L  SA+Q I+  +  V     L++ GI   FL+KGL WLG+  I++EY+   +CK SRFL+ F++ ++ NIL  + I R + + +             +L   +   F    P  I+ N+   DGRY C  DP W    + W  +H  +F +G  Q+L +L L   +   + K   TI  + +       +++T+ QV  LL    RD+ + +I +  + +L FVR ++   +   I+  F DN   DG L  Y   A+ED + +L ++  + + WL+FF +P FRT+I    + ++  + RK +  L I       D E  +  E W     +L N + VL++R+ QL+
Sbjct:    1 MMAVGGVGALLALPTVVFGVLGELALLAAFSNKLVRSARQHIFSAYQCVFGIAFLIYFGINNLFLTKGLLWLGYEPIFLEYSHTYACKTSRFLKCFISATVSNILYADAINRAMAIKAKCYQPVTTTKCFVLLCCCVIGGFVAAVPNFIISNIWLIDGRYICGKDPAWSQSTVLWTTVHETLFANGCAQALSVLFLIMAMSRDVGKLDNTIDYLHTAHKLPGTLTETVFQVTFLLREARRDAWVCIIFNMSLAILMFVRGVIRGFLDWEIYSKFEDNGRTDGVLSFYMIIALEDLVIYLMMIVFAYHFWLFFFYVPAFRTWIFGETKDTVGGLRRKLEPFLPIN-----PDEEYYQ--ENWDAGTFYLQNGNPVLYQRMVQLD 376
[Close]
BLAST of GCR137 vs. TrEMBL
Match: A0A183SL57 (Uncharacterized protein OS=Schistocephalus solidus OX=70667 GN=SSLN_LOCUS4955 PE=4 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 2.511e-39
Identity = 103/392 (26.28%), Postives = 189/392 (48.21%), Query Frame = 1 
Query:  193 ISFGGVTGLLTIPTXXXXXXXXXXXXXXXXXXXXXXAKQEIYGMFYVVINSINLLFTGIAVNFLSKGLPWLGFTGIYIEYASPLSCKLSRFLQTFLNCSLINILLCEVIGRLIYLLSYGAHSPDLNFIIYILAGALFSSFFLCFPMIILYNLQKPDGRYDCIPDPEWPYVFIRWHAIHRMIFCDGLMQSLIILVLNGFIVFQLLKFRWTIASIQSFFTESNIVSDTLKQVIRLLNNNARDSILVVIHSTFVVLLFFVRSIVSYVVHKVIFIDFLDNTTVDGALLNYKWTAVEDFLTFLHILFISCYMWLYFFIIPTFRTYI----RKSIKRISRKNQTVLRIADLFMLTDNEMAESPEVWKKSQDHLGNLDSVLFERVHQLEGALKYNSNQL 1356
            ++ GGV  LL +PT +  I   + +   F   L  SA+Q  +  F        LL+ GI     +KGL WLG+  +++E++   +CK SRF+  F++ ++ NIL  +   R + + +             +L+  +   F    P  I+ NL + DGR  C  DP W    I W   H  +F +G  Q+L ++ L   +   + K   TI  + +       +++T+ QV  LL  + RD+ + ++ +  + +L F R+ +   ++  I+ ++ DN   DG L  Y + A+ED + FL ++  + + WL+F+ IP FRT+I    + ++  I RK +        F+  + +  +  E W     +L N + VL+ER+ +L+  +     ++
Sbjct:    1 MAVGGVAALLVLPTVVFGIIGELTLITAFCNKLIRSARQHAFSAFQSAFGIAFLLYFGIYYLLFTKGLSWLGYEPVFLEHSHTFACKASRFICCFISATVSNILYADASNRAMAIKAKCYQPATTTKGFVVLSCCVIGGFVAAMPEFIICNLWRIDGRLICEKDPAWAPSVIHWLIFHETVFINGFGQALAVIFLIMAMSRDVGKLDNTIDYLHTAHRLPGTITETVFQVTFLLRESRRDAWVCIVFNMSLAILMFARATIRSCLNYEIYYNYEDNGRTDGVLKFYMFNALEDLVIFLMMIVFAYHFWLFFYYIPAFRTWIFGETKDTVGGIRRKLEP-------FLPLNPDGEDYQENWDSGTFYLQNGNPVLYERLVELDNIINEAQREM 385
[Close]
BLAST of GCR137 vs. Planmine SMEST
Match: SMESG000046231.1 (SMESG000046231.1)

HSP 1 Score: 865.144 bits (2234), Expect = 0.000e+0
Identity = 449/449 (100.00%), Postives = 449/449 (100.00%), Query Frame = 1 
Query:   43 MTEKTYNDSFVYNLSVLYFFNSDMYTECAEKDLYMLYVGKGKANFNCDYLISFGGVTGLLTIPTXXXXXXXXXXXXXXXXXXXXXXAKQEIYGMFYVVINSINLLFTGIAVNFLSKGLPWLGFTGIYIEYASPLSCKLSRFLQTFLNCSLINILLCEVIGRLIYLLSYGAHSPDLNFIIYILAGALFSSFFLCFPMIILYNLQKPDGRYDCIPDPEWPYVFIRWHAIHRMIFCDGLMQSLIILVLNGFIVFQLLKFRWTIASIQSFFTESNIVSDTLKQVIRLLNNNARDSILVVIHSTFVVLLFFVRSIVSYVVHKVIFIDFLDNTTVDGALLNYKWTAVEDFLTFLHILFISCYMWLYFFIIPTFRTYIRKSIKRISRKNQTVLRIADLFMLTDNEMAESPEVWKKSQDHLGNLDSVLFERVHQLEGALKYNSNQLLLKSHSQANES 1389
            MTEKTYNDSFVYNLSVLYFFNSDMYTECAEKDLYMLYVGKGKANFNCDYLISFGGVTGLLTIPTALIAIFLNIIIGFGFLFSLRLSAKQEIYGMFYVVINSINLLFTGIAVNFLSKGLPWLGFTGIYIEYASPLSCKLSRFLQTFLNCSLINILLCEVIGRLIYLLSYGAHSPDLNFIIYILAGALFSSFFLCFPMIILYNLQKPDGRYDCIPDPEWPYVFIRWHAIHRMIFCDGLMQSLIILVLNGFIVFQLLKFRWTIASIQSFFTESNIVSDTLKQVIRLLNNNARDSILVVIHSTFVVLLFFVRSIVSYVVHKVIFIDFLDNTTVDGALLNYKWTAVEDFLTFLHILFISCYMWLYFFIIPTFRTYIRKSIKRISRKNQTVLRIADLFMLTDNEMAESPEVWKKSQDHLGNLDSVLFERVHQLEGALKYNSNQLLLKSHSQANES
Sbjct:    1 MTEKTYNDSFVYNLSVLYFFNSDMYTECAEKDLYMLYVGKGKANFNCDYLISFGGVTGLLTIPTALIAIFLNIIIGFGFLFSLRLSAKQEIYGMFYVVINSINLLFTGIAVNFLSKGLPWLGFTGIYIEYASPLSCKLSRFLQTFLNCSLINILLCEVIGRLIYLLSYGAHSPDLNFIIYILAGALFSSFFLCFPMIILYNLQKPDGRYDCIPDPEWPYVFIRWHAIHRMIFCDGLMQSLIILVLNGFIVFQLLKFRWTIASIQSFFTESNIVSDTLKQVIRLLNNNARDSILVVIHSTFVVLLFFVRSIVSYVVHKVIFIDFLDNTTVDGALLNYKWTAVEDFLTFLHILFISCYMWLYFFIIPTFRTYIRKSIKRISRKNQTVLRIADLFMLTDNEMAESPEVWKKSQDHLGNLDSVLFERVHQLEGALKYNSNQLLLKSHSQANES 449
[Close]
BLAST of GCR137 vs. Planmine SMEST
Match: SMESG000046224.1 (SMESG000046224.1)

HSP 1 Score: 865.144 bits (2234), Expect = 0.000e+0
Identity = 448/449 (99.78%), Postives = 449/449 (100.00%), Query Frame = 1 
Query:   43 MTEKTYNDSFVYNLSVLYFFNSDMYTECAEKDLYMLYVGKGKANFNCDYLISFGGVTGLLTIPTXXXXXXXXXXXXXXXXXXXXXXAKQEIYGMFYVVINSINLLFTGIAVNFLSKGLPWLGFTGIYIEYASPLSCKLSRFLQTFLNCSLINILLCEVIGRLIYLLSYGAHSPDLNFIIYILAGALFSSFFLCFPMIILYNLQKPDGRYDCIPDPEWPYVFIRWHAIHRMIFCDGLMQSLIILVLNGFIVFQLLKFRWTIASIQSFFTESNIVSDTLKQVIRLLNNNARDSILVVIHSTFVVLLFFVRSIVSYVVHKVIFIDFLDNTTVDGALLNYKWTAVEDFLTFLHILFISCYMWLYFFIIPTFRTYIRKSIKRISRKNQTVLRIADLFMLTDNEMAESPEVWKKSQDHLGNLDSVLFERVHQLEGALKYNSNQLLLKSHSQANES 1389
            MTEKTYNDSFVYNLSV+YFFNSDMYTECAEKDLYMLYVGKGKANFNCDYLISFGGVTGLLTIPTALIAIFLNIIIGFGFLFSLRLSAKQEIYGMFYVVINSINLLFTGIAVNFLSKGLPWLGFTGIYIEYASPLSCKLSRFLQTFLNCSLINILLCEVIGRLIYLLSYGAHSPDLNFIIYILAGALFSSFFLCFPMIILYNLQKPDGRYDCIPDPEWPYVFIRWHAIHRMIFCDGLMQSLIILVLNGFIVFQLLKFRWTIASIQSFFTESNIVSDTLKQVIRLLNNNARDSILVVIHSTFVVLLFFVRSIVSYVVHKVIFIDFLDNTTVDGALLNYKWTAVEDFLTFLHILFISCYMWLYFFIIPTFRTYIRKSIKRISRKNQTVLRIADLFMLTDNEMAESPEVWKKSQDHLGNLDSVLFERVHQLEGALKYNSNQLLLKSHSQANES
Sbjct:    1 MTEKTYNDSFVYNLSVIYFFNSDMYTECAEKDLYMLYVGKGKANFNCDYLISFGGVTGLLTIPTALIAIFLNIIIGFGFLFSLRLSAKQEIYGMFYVVINSINLLFTGIAVNFLSKGLPWLGFTGIYIEYASPLSCKLSRFLQTFLNCSLINILLCEVIGRLIYLLSYGAHSPDLNFIIYILAGALFSSFFLCFPMIILYNLQKPDGRYDCIPDPEWPYVFIRWHAIHRMIFCDGLMQSLIILVLNGFIVFQLLKFRWTIASIQSFFTESNIVSDTLKQVIRLLNNNARDSILVVIHSTFVVLLFFVRSIVSYVVHKVIFIDFLDNTTVDGALLNYKWTAVEDFLTFLHILFISCYMWLYFFIIPTFRTYIRKSIKRISRKNQTVLRIADLFMLTDNEMAESPEVWKKSQDHLGNLDSVLFERVHQLEGALKYNSNQLLLKSHSQANES 449
[Close]
BLAST of GCR137 vs. Planmine SMEST
Match: SMESG000046223.1 (SMESG000046223.1)

HSP 1 Score: 479.559 bits (1233), Expect = 8.975e-167
Identity = 235/437 (53.78%), Postives = 314/437 (71.85%), Query Frame = 1 
Query:   43 MTEKTYNDSFVYNLSVLYFFNSDMYTECAEKDLYMLYVGKGKANFNCDYLISFGGVTGLLTIPTXXXXXXXXXXXXXXXXXXXXXXAKQEIYGMFYVVINSINLLFTGIAVNFLSKGLPWLGFTGIYIEYASPLSCKLSRFLQTFLNCSLINILLCEVIGRLIYLLSYGAHSPDLNFIIYILAGALFSSFFLCFPMIILYNLQKPDGRYDCIPDPEWPYVFIRWHAIHRMIFCDGLMQSLIILVLNGFIVFQLLKFRWTIASIQSFFTESNIVSDTLKQVIRLLNNNARDSILVVIHSTFVVLLFFVRSIVSYVVHKVIFIDFLDNTTVDGALLNYKWTAVEDFLTFLHILFISCYMWLYFFIIPTFRTYIRKSIKRISRKNQTVLRIADLFMLTDNEMAESPEVWKKSQDHLGNLDSVLFERVHQLEGALKYNSNQ 1353
            M +  +N S   N S+ +F++ +MYT+CAE  L     GK +    CD  IS GG+  LLTIPT  +  + N+I+    L  +R SA+QEIYG+F+ V++++NLL+TGI +NF SKGLPWLGF G YIEYASPL CK S+F Q FLNC  IN+L CE +GRLI + S GAHSP    +IY L  A+  SF  C P+I LYNL++PDGRYDC+ DP WP   I+W AIHR+++CDGL+Q + IL  N   +  LLK R TI  I     ESNIVSDTLKQ+ RLL+N  RD+ +VVIHST +  LF ++S VSY +++V+++D+ DNTTV+G L+NYKWT++ED + FL+ L ISC+MWLY+FIIP FR++IR  IK++++ N +VLR+ D+FMLTDNEM E+P+ W+KSQ++L NLD VL+ER+ QLEGALK    Q
Sbjct:    1 MDDDYFNRSIYENRSLEFFYHREMYTQCAEHSLNF---GKKQPTTYCDNFISIGGIVALLTIPTVWVGFWGNVILFSALLLQIRRSARQEIYGVFFSVVDTMNLLYTGILINFGSKGLPWLGFQGFYIEYASPLMCKFSKFFQVFLNCYSINMLFCEALGRLIMIKSRGAHSPRYQHVIYFLCVAMAISFVQCSPIITLYNLRRPDGRYDCVLDPGWPRAIIQWFAIHRLLYCDGLIQCIFILFFNCINILGLLKLRATIEYIDHTAKESNIVSDTLKQITRLLHNIERDTQVVVIHSTIIAFLFLLKSSVSYEIYEVLYVDYTDNTTVNGVLINYKWTSIEDIVIFLYFLCISCHMWLYYFIIPPFRSWIRDVIKKVTKNNPSVLRVVDMFMLTDNEMGETPDQWRKSQNYLQNLDPVLYERIRQLEGALKQTDIQ 434
[Close]
BLAST of GCR137 vs. Planmine SMEST
Match: SMESG000046233.1 (SMESG000046233.1)

HSP 1 Score: 469.159 bits (1206), Expect = 6.311e-163
Identity = 229/414 (55.31%), Postives = 301/414 (72.71%), Query Frame = 1 
Query:  112 MYTECAEKDLYMLYVGKGKANFNCDYLISFGGVTGLLTIPTXXXXXXXXXXXXXXXXXXXXXXAKQEIYGMFYVVINSINLLFTGIAVNFLSKGLPWLGFTGIYIEYASPLSCKLSRFLQTFLNCSLINILLCEVIGRLIYLLSYGAHSPDLNFIIYILAGALFSSFFLCFPMIILYNLQKPDGRYDCIPDPEWPYVFIRWHAIHRMIFCDGLMQSLIILVLNGFIVFQLLKFRWTIASIQSFFTESNIVSDTLKQVIRLLNNNARDSILVVIHSTFVVLLFFVRSIVSYVVHKVIFIDFLDNTTVDGALLNYKWTAVEDFLTFLHILFISCYMWLYFFIIPTFRTYIRKSIKRISRKNQTVLRIADLFMLTDNEMAESPEVWKKSQDHLGNLDSVLFERVHQLEGALKYNSNQ 1353
            MYT+CAE  L     GK +    CD  IS GG+  LLTIPT  +  + N+I+    L  +R SA+QEIYG+F+ V++++NLL+TGI +NF SKGLPWLGF G YIEYASPL CK S+F Q FLNC  IN+L CE +GRLI + S GAHSP    +IY L  A+  SF  C P+I LYNL++PDGRYDC+ DP WP   I+W AIHR+++CDGL+Q + IL  N   +  LLK R TI  I     ESNIVSDTLKQ+ RLL+N  RD+ +VVIHST +  LF ++S VSY +++V+++D+ DNTTV+G L+NYKWT++ED + FL+ L ISC+MWLY+FIIP FR++IR  IK++++ N +VLR+ D+FMLTDNEM E+P+ W+KSQ++L NLD VL+ER+ QLEGALK    Q
Sbjct:    1 MYTQCAEHSLNF---GKKQPTTYCDNFISIGGIVALLTIPTVWVGFWGNVILFSALLLQIRRSARQEIYGVFFSVVDTMNLLYTGILINFGSKGLPWLGFQGFYIEYASPLMCKFSKFFQVFLNCYSINMLFCEALGRLIMIKSRGAHSPRYQHVIYFLCVAMAISFVQCSPIITLYNLRRPDGRYDCVLDPGWPRAIIQWFAIHRLLYCDGLIQCIFILFFNCINILGLLKLRATIEYIDHTAKESNIVSDTLKQITRLLHNIERDTQVVVIHSTIIAFLFLLKSSVSYEIYEVLYVDYTDNTTVNGVLINYKWTSIEDIVIFLYFLCISCHMWLYYFIIPPFRSWIRDVIKKVTKNNPSVLRVVDMFMLTDNEMGETPDQWRKSQNYLQNLDPVLYERIRQLEGALKQTDVQ 411
[Close]
BLAST of GCR137 vs. Planmine SMEST
Match: SMESG000050119.1 (SMESG000050119.1)

HSP 1 Score: 144.05 bits (362), Expect = 6.875e-39
Identity = 96/310 (30.97%), Postives = 156/310 (50.32%), Query Frame = 1 
Query:  403 LGFTGIYIEYASPLSCKLSRFLQTFLNCSLINILLCEVIGRLIYLLSYGAHSPDLNFIIYILAGALFSSFFLCFPMIILYNLQKPDGRYDCIPDPEWPYVFIRWHAIHRMIFCDGLMQSLIILVLNGFIVFQLLKFRWTIASIQSFFTESNIVSDTLKQVIRLLNNNARDSILVVIHSTFVVLLFFVRSIVSYVVHKVIFIDFLDNTTVDGALLNYKWTAVEDFLTFLHILFISCYMWLYFFIIPTFRTYIRKSIKRISRKNQTVLRIADLFMLTDNEMAESPEVWKKSQD-HLGNLDSVLFERVHQLEG 1329
            +G  G+Y+ Y S LSCKL  F   FL+   +N+LL E   R + L   G       F+I+ +   +  SF    P+ ++++L   DGRYDC  D ++P+  ++W  IH  +FC+GL Q+LII  LN F  +       TI +IQ+   E  + S  L ++   L  +  D+   ++H+T    +  +++I S  +    F  + DNTTV+G +  Y    +    + L  LF S + WLYFF    FR  I+  I   + +++ +  + D FM     M +S +   K +D  + NL  VL+ER+   +G
Sbjct:    2 VGIYGVYVLYKSTLSCKLFSFAGIFLDSLSVNLLLGESFHRFLILKFKGGIEIQREFVIFGVLVIIIFSFIQSAPLTVIFSLWLIDGRYDCEIDCQFPWPIVQWTGIHFGLFCNGLFQTLIIFFLNSFSWYYWYVLYHTIHTIQTATNEYRLSSKILDEICNSLTVSLDDAFCTLVHTTVGAAILNIKAIFSLKIFYEFFSVYEDNTTVEGVVYMYYLRTLGQIFSTLFYLFESYHFWLYFFCNSNFRQLIKTKIMMFNPESERLSNVIDQFM-----MGDSVKKTAKMEDLKMHNL--VLYERIRNFDG 304
The following BLAST results are available for this feature:
BLAST of GCR137 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of GCR137 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of GCR137 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of GCR137 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of GCR137 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of GCR137 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of GCR137 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of GCR137 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A193KUU20.000e+0100.00GCR137 OS=Schmidtea mediterranea OX=79327 GN=gcr13... [more]
A0A193KUF32.926e-16353.78GCR139 OS=Schmidtea mediterranea OX=79327 GN=gcr13... [more]
A0A193KUN91.161e-5231.72GCR128 OS=Schmidtea mediterranea OX=79327 GN=gcr12... [more]
A0A3P7P5P62.432e-4229.24Uncharacterized protein OS=Dibothriocephalus latus... [more]
A0A183SL572.511e-3926.28Uncharacterized protein OS=Schistocephalus solidus... [more]
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BLAST of GCR137 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of GCR137 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of GCR137 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of GCR137 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of GCR137 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of GCR137 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000046231.10.000e+0100.00SMESG000046231.1[more]
SMESG000046224.10.000e+099.78SMESG000046224.1[more]
SMESG000046223.18.975e-16753.78SMESG000046223.1[more]
SMESG000046233.16.311e-16355.31SMESG000046233.1[more]
SMESG000050119.16.875e-3930.97SMESG000050119.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30031870 ID=SMED30031870|Name=GCR137|organism=Schmidtea mediterranea sexual|type=transcript|length=1540bp
CGAATAATTTTCAAACATTTTCTACTTCTTTCGCCGATTTTGATGACCGA
AAAAACTTACAATGACAGTTTTGTCTACAACTTGTCAGTTCTATATTTCT
TCAATTCTGATATGTATACGGAATGTGCCGAAAAAGACCTCTATATGTTA
TATGTTGGAAAAGGAAAAGCCAATTTCAATTGTGATTATTTAATCTCATT
TGGAGGAGTGACAGGACTTCTGACGATCCCAACTGCTTTGATTGCCATTT
TCCTGAATATCATTATAGGATTTGGATTTCTTTTTAGTCTTAGACTATCA
GCAAAACAAGAAATATACGGTATGTTTTATGTAGTAATCAATTCTATTAA
TTTATTATTTACTGGAATCGCTGTTAACTTTCTGAGTAAAGGTCTTCCTT
GGCTAGGATTCACTGGAATCTATATCGAGTATGCCTCTCCTTTAAGTTGC
AAACTCAGTAGGTTTTTACAAACGTTCCTAAATTGTTCTTTAATTAACAT
TTTACTATGTGAAGTTATTGGAAGACTCATATATTTGCTGTCCTATGGTG
CCCATTCTCCAGATTTAAATTTTATTATTTATATTTTGGCCGGGGCACTT
TTTAGTAGTTTTTTTCTCTGTTTTCCTATGATTATATTATATAATTTACA
AAAACCTGATGGGCGATACGACTGTATTCCTGATCCTGAATGGCCATATG
TCTTTATTAGGTGGCACGCTATCCATCGCATGATATTTTGTGACGGACTG
ATGCAGTCTCTTATAATATTAGTGTTGAATGGTTTCATCGTTTTTCAACT
GTTGAAGTTTCGTTGGACAATCGCTAGCATCCAAAGTTTCTTTACAGAGT
CCAATATTGTTTCAGATACCTTGAAACAGGTTATAAGGCTCCTTAATAAT
AATGCCCGTGATTCAATTTTAGTTGTAATTCACAGCACATTCGTAGTTTT
ATTATTTTTTGTTAGATCGATTGTGTCTTATGTTGTGCACAAAGTAATAT
TCATAGACTTTTTAGACAACACAACTGTTGATGGAGCGCTCCTTAATTAC
AAATGGACAGCCGTTGAAGACTTTTTAACCTTTTTGCATATTCTATTCAT
TAGTTGCTACATGTGGCTATATTTCTTTATAATTCCGACCTTTCGAACTT
ATATTAGGAAATCAATCAAAAGAATCTCCCGAAAGAATCAAACAGTATTA
CGAATCGCAGATTTGTTTATGTTAACTGACAACGAAATGGCAGAAAGTCC
CGAAGTATGGAAAAAGTCTCAAGATCATTTAGGAAATTTAGATTCAGTGC
TTTTCGAACGAGTTCATCAGTTGGAAGGAGCCTTGAAATATAATTCAAAC
CAGCTGCTATTGAAATCCCATAGCCAAGCAAATGAGTCGAATAAATAAAA
ATATAATATTAACAAAAATCAAAATATCATTTCTACCTGATTGAAGTGTA
ACATTTGAAACTTAGTTTGTCGTTTTAATTATACAATTCATTTAATAAAA
TGTATATATGAAATAAAGGTCTAAAGGACATTAAGGCCCC
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protein sequence of SMED30031870-orf-1

>SMED30031870-orf-1 ID=SMED30031870-orf-1|Name=SMED30031870-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=466bp
RIIFKHFLLLSPILMTEKTYNDSFVYNLSVLYFFNSDMYTECAEKDLYML
YVGKGKANFNCDYLISFGGVTGLLTIPTALIAIFLNIIIGFGFLFSLRLS
AKQEIYGMFYVVINSINLLFTGIAVNFLSKGLPWLGFTGIYIEYASPLSC
KLSRFLQTFLNCSLINILLCEVIGRLIYLLSYGAHSPDLNFIIYILAGAL
FSSFFLCFPMIILYNLQKPDGRYDCIPDPEWPYVFIRWHAIHRMIFCDGL
MQSLIILVLNGFIVFQLLKFRWTIASIQSFFTESNIVSDTLKQVIRLLNN
NARDSILVVIHSTFVVLLFFVRSIVSYVVHKVIFIDFLDNTTVDGALLNY
KWTAVEDFLTFLHILFISCYMWLYFFIIPTFRTYIRKSIKRISRKNQTVL
RIADLFMLTDNEMAESPEVWKKSQDHLGNLDSVLFERVHQLEGALKYNSN
QLLLKSHSQANESNK*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000208testis
Vocabulary: cellular component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableTMHMMTMhelixcoord: 73..95
NoneNo IPR availableTMHMMTMhelixcoord: 249..268
NoneNo IPR availableTMHMMTMhelixcoord: 359..381
NoneNo IPR availableTMHMMTMhelixcoord: 307..329
NoneNo IPR availableTMHMMTMhelixcoord: 191..213
NoneNo IPR availableTMHMMTMhelixcoord: 157..179
NoneNo IPR availableTMHMMTMhelixcoord: 107..129