SMED30031796

Overview
NameSMED30031796
Smed IDSMED30031796
Length (bp)3971
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30031796 (SMED30031796) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30031796 (SMED30031796) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30031796 (SMED30031796) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30031796 (SMED30031796) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30031796

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 1

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30031796SMESG000011031.1 SmedASXL_014706SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of SMED30031796 vs. Planmine SMEST
Match: SMESG000011031.1 (SMESG000011031.1)

HSP 1 Score: 1994.55 bits (5166), Expect = 0.000e+0
Identity = 1051/1109 (94.77%), Postives = 1059/1109 (95.49%), Query Frame = 2 
Query:  308 VHCNLTGNGRYKCVIIIKSLCIHSQKMLMAIANTNKGNFFRDFAMLLSVDDDFIQSVVCYVLNVLVDGIPVLVSCLNLVDISCRLVDIIVNRADINATGGESLCTNAAVLIILLLKHSESFHNHIMEIEQTSFVIRKLILLYDTNIVYAKYGIKILDLLLSSESNGLIVAHYFSQSSNITEYLFDLLITGKSLIPLVIKCLKAFVDCKIFCRTNICAYGLINVLRCCQNYIEAEHVKAHQLETALKFFNDILLNYNGTVMLFVNESTARNFLYLLTSIMNKSIKSLFLLGMQALIIFLNRYYSVRPFPYEQLIVYLDLFDTVNGKIFRQSNKGQASLNNKSFETMLKNRCVFINLHIDFIFELIRFATVDRSNIVLSEKIILQINSIHGFAYSIFFSTYLRYMMSLIKRKKYLYLLSVDKFLEVTHIVLCSSYNFVATKSSLQMIFPQLINSLFILKSEIRSENCAFNNDILETVILNLIEICTLDLHIDEQNWRKVVSKGMLSIIDCSREGLIVLCSAPQTDLSTCLTCFWLLGSLVELNVNSSTCSISDNEKLAMLESIENACTLKLLESLYCSPVIFSVKFIKLIKILLDTSDKSTSNIGHFYSDYLSNLCLSPNLMTPEVLNNLLVELSIVKILNRESVVCMEATQSIVYKSLTNSTIVNDQNISVIFNCNLLDLVNITILCFSAILNKDVNIINSLNSVLRLVDKSVKNLKEGTFEFSEIMAKKLIEKLWLIPDKLYLDEIFQSDDLRNILWQSLSVVFLCSSIYSETVPLLKITFLVSEFIKRASISEIEKEMIFKLMLKASLKDGSLNVRSQLISLLCNSGEGRLCVSITENDSVSVKHIKLIIISTFVLDVSANYKLDHAEKVHVSGQFLLQCINHCCKRKTSLSQICGLTILHAIFDCQSLVDTREPYLMNPEXXXXXXXXXXXXXVDRSEIVARHLAVKIFRKIIQFCSSSNDYCHLEEQIIGSIWIEIVIQNLLCESTENENNDFIYDETCLEFLIQXXXXXXXXXXXXXXXXXWRSFSVWFVQHSLSDLPNNIAVLVCQLIIRLTSHSKLSCFSETEKICLLKKLASDNNYQDEFVLMKWEINPTELLRLIGDKLDM 3634
            VHCNLTG+GRYKCVIIIKSLCIHSQKMLMAIANTNKGNFFRDFAMLLSVDDDFIQSVVCYVLNVLVDGIPVLVSCLNLVDISCRLVDIIVNRADINATGGESLCTNAAVLIILLLKHSESFHNHIMEIEQTSFVIRKLILLYDTNIVYAKYGIKILDLLLSSESNGLIVAHYFSQSSNITEYLFDLLITGKSLIPLVIKCLKAFVDCKIFCRTNICAYGLINVLRCCQNYIEAEHVKAHQLETALKFFNDILLNYNGTVMLFVNESTARNFLYLLTSIMNKSIKSLFLLGMQALIIFLNRYYSVRPFPYEQLIVYLDLFDTVNGKIFRQSNKGQASLNNKSFETMLKNRCVFINLHIDFIFELIRFATVDRSNIVLSEKIILQINSIHGFAYSIFFSTYLRYMMSLIKRKKYLYLLSVDKFLEVTHIVLCSSYNFVATKSSLQMIFPQLINSLFILKSEIRSENCAFNNDILETVILNLIEICTLDLHIDEQNWRKVVSKGMLSIIDCSREGLIVLCSAPQTDLSTCLTCFWLLGSLVELNVNSSTCSISDNEKLAMLESIENACTLKLLESLYCSPVIFSVKFIKLIKILLDTSDKSTSNIGHFYSDYLSNLCLSPNLMTPEVLNNLLVELSIVKILNRESVVCMEATQSIVYKSLTNSTIVNDQNISVIFNCNLLDLVNITILCFSAILNKDVNIINSLNSVLRLVDKSVKNLKEGTFEFSEIMAKKLIEKLWLIPDKLYLDEIFQSDDLRNILWQSLSVVFLCSSIYSETVPLLKITFLVSEFIKRASISEIEKEMIFKLMLKASLKDGSLNVRSQLISLLCNSGEGRLCVSITENDSVS+   +LII             L   ++      F                  C + I+ A    QSLVDTREPYLMNPEYLLQITYILYTIIVDRSEIVARHLAVKIFRKIIQFCSSSNDYCHLEEQIIGSIWIEIVIQNLLCESTENENNDFIYDETCLEFLIQLLESSSSAINLSVSSNLWRSFSVWFVQHSLSDLPNNIAVLVCQLIIRLTSHSKLSCFSETEKICLLKKLASDNNYQDEFVLMKWEINPTELLRLIGDKLD+
Sbjct:   76 VHCNLTGDGRYKCVIIIKSLCIHSQKMLMAIANTNKGNFFRDFAMLLSVDDDFIQSVVCYVLNVLVDGIPVLVSCLNLVDISCRLVDIIVNRADINATGGESLCTNAAVLIILLLKHSESFHNHIMEIEQTSFVIRKLILLYDTNIVYAKYGIKILDLLLSSESNGLIVAHYFSQSSNITEYLFDLLITGKSLIPLVIKCLKAFVDCKIFCRTNICAYGLINVLRCCQNYIEAEHVKAHQLETALKFFNDILLNYNGTVMLFVNESTARNFLYLLTSIMNKSIKSLFLLGMQALIIFLNRYYSVRPFPYEQLIVYLDLFDTVNGKIFRQSNKGQASLNNKSFETMLKNRCVFINLHIDFIFELIRFATVDRSNIVLSEKIILQINSIHGFAYSIFFSTYLRYMMSLIKRKKYLYLLSVDKFLEVTHIVLCSSYNFVATKSSLQMIFPQLINSLFILKSEIRSENCAFNNDILETVILNLIEICTLDLHIDEQNWRKVVSKGMLSIIDCSREGLIVLCSAPQTDLSTCLTCFWLLGSLVELNVNSSTCSISDNEKLAMLESIENACTLKLLESLYCSPVIFSVKFIKLIKILLDTSDKSTSNIGHFYSDYLSNLCLSPNLMTPEVLNNLLVELSIVKILNRESVVCMEATQSIVYKSLTNSTIVNDQNISVIFNCNLLDLVNITILCFSAILNKDVNIINSLNSVLRLVDKSVKNLKEGTFEFSEIMAKKLIEKLWLIPDKLYLDEIFQSDDLRNILWQSLSVVFLCSSIYSETVPLLKITFLVSEFIKRASISEIEKEMIFKLMLKASLKDGSLNVRSQLISLLCNSGEGRLCVSITENDSVSM--FRLII------------NLTTQKRCMFPVSFY-----------------CNVLIIAANVK-QSLVDTREPYLMNPEYLLQITYILYTIIVDRSEIVARHLAVKIFRKIIQFCSSSNDYCHLEEQIIGSIWIEIVIQNLLCESTENENNDFIYDETCLEFLIQLLESSSSAINLSVSSNLWRSFSVWFVQHSLSDLPNNIAVLVCQLIIRLTSHSKLSCFSETEKICLLKKLASDNNYQDEFVLMKWEINPTELLRLIGDKLDV 1152

HSP 2 Score: 109.768 bits (273), Expect = 8.005e-24
Identity = 52/54 (96.30%), Postives = 52/54 (96.30%), Query Frame = 1 
Query:  154 MKYFQECFELISNTLDIISNINGEHLCEIILDLSDYIKFETVDDYNDTCCQCAL 315
            MKYFQECFELISNTLDIISNINGEHLCEIILDLSDYIKFETVDDYNDTCCQ  L
Sbjct:    1 MKYFQECFELISNTLDIISNINGEHLCEIILDLSDYIKFETVDDYNDTCCQLIL 54

HSP 3 Score: 71.2478 bits (173), Expect = 5.745e-12
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 3 
Query: 2880 MFRLIINLTTQKRCMFPVSFYCNVLIIAANVKQ 2978
            MFRLIINLTTQKRCMFPVSFYCNVLIIAANVKQ
Sbjct:  919 MFRLIINLTTQKRCMFPVSFYCNVLIIAANVKQ 951
[Close]
BLAST of SMED30031796 vs. Planmine SMEST
Match: SMESG000011031.1 (SMESG000011031.1)

HSP 1 Score: 1994.55 bits (5166), Expect = 0.000e+0
Identity = 1051/1109 (94.77%), Postives = 1059/1109 (95.49%), Query Frame = 2 
Query:  308 VHCNLTGNGRYKCVIIIKSLCIHSQKMLMAIANTNKGNFFRDFAMLLSVDDDFIQSVVCYVLNVLVDGIPVLVSCLNLVDISCRLVDIIVNRADINATGGESLCTNAAVLIILLLKHSESFHNHIMEIEQTSFVIRKLILLYDTNIVYAKYGIKILDLLLSSESNGLIVAHYFSQSSNITEYLFDLLITGKSLIPLVIKCLKAFVDCKIFCRTNICAYGLINVLRCCQNYIEAEHVKAHQLETALKFFNDILLNYNGTVMLFVNESTARNFLYLLTSIMNKSIKSLFLLGMQALIIFLNRYYSVRPFPYEQLIVYLDLFDTVNGKIFRQSNKGQASLNNKSFETMLKNRCVFINLHIDFIFELIRFATVDRSNIVLSEKIILQINSIHGFAYSIFFSTYLRYMMSLIKRKKYLYLLSVDKFLEVTHIVLCSSYNFVATKSSLQMIFPQLINSLFILKSEIRSENCAFNNDILETVILNLIEICTLDLHIDEQNWRKVVSKGMLSIIDCSREGLIVLCSAPQTDLSTCLTCFWLLGSLVELNVNSSTCSISDNEKLAMLESIENACTLKLLESLYCSPVIFSVKFIKLIKILLDTSDKSTSNIGHFYSDYLSNLCLSPNLMTPEVLNNLLVELSIVKILNRESVVCMEATQSIVYKSLTNSTIVNDQNISVIFNCNLLDLVNITILCFSAILNKDVNIINSLNSVLRLVDKSVKNLKEGTFEFSEIMAKKLIEKLWLIPDKLYLDEIFQSDDLRNILWQSLSVVFLCSSIYSETVPLLKITFLVSEFIKRASISEIEKEMIFKLMLKASLKDGSLNVRSQLISLLCNSGEGRLCVSITENDSVSVKHIKLIIISTFVLDVSANYKLDHAEKVHVSGQFLLQCINHCCKRKTSLSQICGLTILHAIFDCQSLVDTREPYLMNPEXXXXXXXXXXXXXVDRSEIVARHLAVKIFRKIIQFCSSSNDYCHLEEQIIGSIWIEIVIQNLLCESTENENNDFIYDETCLEFLIQXXXXXXXXXXXXXXXXXWRSFSVWFVQHSLSDLPNNIAVLVCQLIIRLTSHSKLSCFSETEKICLLKKLASDNNYQDEFVLMKWEINPTELLRLIGDKLDM 3634
            VHCNLTG+GRYKCVIIIKSLCIHSQKMLMAIANTNKGNFFRDFAMLLSVDDDFIQSVVCYVLNVLVDGIPVLVSCLNLVDISCRLVDIIVNRADINATGGESLCTNAAVLIILLLKHSESFHNHIMEIEQTSFVIRKLILLYDTNIVYAKYGIKILDLLLSSESNGLIVAHYFSQSSNITEYLFDLLITGKSLIPLVIKCLKAFVDCKIFCRTNICAYGLINVLRCCQNYIEAEHVKAHQLETALKFFNDILLNYNGTVMLFVNESTARNFLYLLTSIMNKSIKSLFLLGMQALIIFLNRYYSVRPFPYEQLIVYLDLFDTVNGKIFRQSNKGQASLNNKSFETMLKNRCVFINLHIDFIFELIRFATVDRSNIVLSEKIILQINSIHGFAYSIFFSTYLRYMMSLIKRKKYLYLLSVDKFLEVTHIVLCSSYNFVATKSSLQMIFPQLINSLFILKSEIRSENCAFNNDILETVILNLIEICTLDLHIDEQNWRKVVSKGMLSIIDCSREGLIVLCSAPQTDLSTCLTCFWLLGSLVELNVNSSTCSISDNEKLAMLESIENACTLKLLESLYCSPVIFSVKFIKLIKILLDTSDKSTSNIGHFYSDYLSNLCLSPNLMTPEVLNNLLVELSIVKILNRESVVCMEATQSIVYKSLTNSTIVNDQNISVIFNCNLLDLVNITILCFSAILNKDVNIINSLNSVLRLVDKSVKNLKEGTFEFSEIMAKKLIEKLWLIPDKLYLDEIFQSDDLRNILWQSLSVVFLCSSIYSETVPLLKITFLVSEFIKRASISEIEKEMIFKLMLKASLKDGSLNVRSQLISLLCNSGEGRLCVSITENDSVS+   +LII             L   ++      F                  C + I+ A    QSLVDTREPYLMNPEYLLQITYILYTIIVDRSEIVARHLAVKIFRKIIQFCSSSNDYCHLEEQIIGSIWIEIVIQNLLCESTENENNDFIYDETCLEFLIQLLESSSSAINLSVSSNLWRSFSVWFVQHSLSDLPNNIAVLVCQLIIRLTSHSKLSCFSETEKICLLKKLASDNNYQDEFVLMKWEINPTELLRLIGDKLD+
Sbjct:   78 VHCNLTGDGRYKCVIIIKSLCIHSQKMLMAIANTNKGNFFRDFAMLLSVDDDFIQSVVCYVLNVLVDGIPVLVSCLNLVDISCRLVDIIVNRADINATGGESLCTNAAVLIILLLKHSESFHNHIMEIEQTSFVIRKLILLYDTNIVYAKYGIKILDLLLSSESNGLIVAHYFSQSSNITEYLFDLLITGKSLIPLVIKCLKAFVDCKIFCRTNICAYGLINVLRCCQNYIEAEHVKAHQLETALKFFNDILLNYNGTVMLFVNESTARNFLYLLTSIMNKSIKSLFLLGMQALIIFLNRYYSVRPFPYEQLIVYLDLFDTVNGKIFRQSNKGQASLNNKSFETMLKNRCVFINLHIDFIFELIRFATVDRSNIVLSEKIILQINSIHGFAYSIFFSTYLRYMMSLIKRKKYLYLLSVDKFLEVTHIVLCSSYNFVATKSSLQMIFPQLINSLFILKSEIRSENCAFNNDILETVILNLIEICTLDLHIDEQNWRKVVSKGMLSIIDCSREGLIVLCSAPQTDLSTCLTCFWLLGSLVELNVNSSTCSISDNEKLAMLESIENACTLKLLESLYCSPVIFSVKFIKLIKILLDTSDKSTSNIGHFYSDYLSNLCLSPNLMTPEVLNNLLVELSIVKILNRESVVCMEATQSIVYKSLTNSTIVNDQNISVIFNCNLLDLVNITILCFSAILNKDVNIINSLNSVLRLVDKSVKNLKEGTFEFSEIMAKKLIEKLWLIPDKLYLDEIFQSDDLRNILWQSLSVVFLCSSIYSETVPLLKITFLVSEFIKRASISEIEKEMIFKLMLKASLKDGSLNVRSQLISLLCNSGEGRLCVSITENDSVSM--FRLII------------NLTTQKRCMFPVSFY-----------------CNVLIIAANVK-QSLVDTREPYLMNPEYLLQITYILYTIIVDRSEIVARHLAVKIFRKIIQFCSSSNDYCHLEEQIIGSIWIEIVIQNLLCESTENENNDFIYDETCLEFLIQLLESSSSAINLSVSSNLWRSFSVWFVQHSLSDLPNNIAVLVCQLIIRLTSHSKLSCFSETEKICLLKKLASDNNYQDEFVLMKWEINPTELLRLIGDKLDV 1154

HSP 2 Score: 108.997 bits (271), Expect = 1.542e-23
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:  154 MKYFQECFELISNTLDIISNINGEHLCEIILDLSDYIKFETVDDYNDTCCQ 306
            MKYFQECFELISNTLDIISNINGEHLCEIILDLSDYIKFETVDDYNDTCCQ
Sbjct:    1 MKYFQECFELISNTLDIISNINGEHLCEIILDLSDYIKFETVDDYNDTCCQ 51

HSP 3 Score: 71.2478 bits (173), Expect = 5.700e-12
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 3 
Query: 2880 MFRLIINLTTQKRCMFPVSFYCNVLIIAANVKQ 2978
            MFRLIINLTTQKRCMFPVSFYCNVLIIAANVKQ
Sbjct:  921 MFRLIINLTTQKRCMFPVSFYCNVLIIAANVKQ 953
[Close]
BLAST of SMED30031796 vs. Planmine SMEST
Match: SMESG000011031.1 (SMESG000011031.1)

HSP 1 Score: 1994.16 bits (5165), Expect = 0.000e+0
Identity = 1051/1109 (94.77%), Postives = 1059/1109 (95.49%), Query Frame = 2 
Query:  308 VHCNLTGNGRYKCVIIIKSLCIHSQKMLMAIANTNKGNFFRDFAMLLSVDDDFIQSVVCYVLNVLVDGIPVLVSCLNLVDISCRLVDIIVNRADINATGGESLCTNAAVLIILLLKHSESFHNHIMEIEQTSFVIRKLILLYDTNIVYAKYGIKILDLLLSSESNGLIVAHYFSQSSNITEYLFDLLITGKSLIPLVIKCLKAFVDCKIFCRTNICAYGLINVLRCCQNYIEAEHVKAHQLETALKFFNDILLNYNGTVMLFVNESTARNFLYLLTSIMNKSIKSLFLLGMQALIIFLNRYYSVRPFPYEQLIVYLDLFDTVNGKIFRQSNKGQASLNNKSFETMLKNRCVFINLHIDFIFELIRFATVDRSNIVLSEKIILQINSIHGFAYSIFFSTYLRYMMSLIKRKKYLYLLSVDKFLEVTHIVLCSSYNFVATKSSLQMIFPQLINSLFILKSEIRSENCAFNNDILETVILNLIEICTLDLHIDEQNWRKVVSKGMLSIIDCSREGLIVLCSAPQTDLSTCLTCFWLLGSLVELNVNSSTCSISDNEKLAMLESIENACTLKLLESLYCSPVIFSVKFIKLIKILLDTSDKSTSNIGHFYSDYLSNLCLSPNLMTPEVLNNLLVELSIVKILNRESVVCMEATQSIVYKSLTNSTIVNDQNISVIFNCNLLDLVNITILCFSAILNKDVNIINSLNSVLRLVDKSVKNLKEGTFEFSEIMAKKLIEKLWLIPDKLYLDEIFQSDDLRNILWQSLSVVFLCSSIYSETVPLLKITFLVSEFIKRASISEIEKEMIFKLMLKASLKDGSLNVRSQLISLLCNSGEGRLCVSITENDSVSVKHIKLIIISTFVLDVSANYKLDHAEKVHVSGQFLLQCINHCCKRKTSLSQICGLTILHAIFDCQSLVDTREPYLMNPEXXXXXXXXXXXXXVDRSEIVARHLAVKIFRKIIQFCSSSNDYCHLEEQIIGSIWIEIVIQNLLCESTENENNDFIYDETCLEFLIQXXXXXXXXXXXXXXXXXWRSFSVWFVQHSLSDLPNNIAVLVCQLIIRLTSHSKLSCFSETEKICLLKKLASDNNYQDEFVLMKWEINPTELLRLIGDKLDM 3634
            VHCNLTG+GRYKCVIIIKSLCIHSQKMLMAIANTNKGNFFRDFAMLLSVDDDFIQSVVCYVLNVLVDGIPVLVSCLNLVDISCRLVDIIVNRADINATGGESLCTNAAVLIILLLKHSESFHNHIMEIEQTSFVIRKLILLYDTNIVYAKYGIKILDLLLSSESNGLIVAHYFSQSSNITEYLFDLLITGKSLIPLVIKCLKAFVDCKIFCRTNICAYGLINVLRCCQNYIEAEHVKAHQLETALKFFNDILLNYNGTVMLFVNESTARNFLYLLTSIMNKSIKSLFLLGMQALIIFLNRYYSVRPFPYEQLIVYLDLFDTVNGKIFRQSNKGQASLNNKSFETMLKNRCVFINLHIDFIFELIRFATVDRSNIVLSEKIILQINSIHGFAYSIFFSTYLRYMMSLIKRKKYLYLLSVDKFLEVTHIVLCSSYNFVATKSSLQMIFPQLINSLFILKSEIRSENCAFNNDILETVILNLIEICTLDLHIDEQNWRKVVSKGMLSIIDCSREGLIVLCSAPQTDLSTCLTCFWLLGSLVELNVNSSTCSISDNEKLAMLESIENACTLKLLESLYCSPVIFSVKFIKLIKILLDTSDKSTSNIGHFYSDYLSNLCLSPNLMTPEVLNNLLVELSIVKILNRESVVCMEATQSIVYKSLTNSTIVNDQNISVIFNCNLLDLVNITILCFSAILNKDVNIINSLNSVLRLVDKSVKNLKEGTFEFSEIMAKKLIEKLWLIPDKLYLDEIFQSDDLRNILWQSLSVVFLCSSIYSETVPLLKITFLVSEFIKRASISEIEKEMIFKLMLKASLKDGSLNVRSQLISLLCNSGEGRLCVSITENDSVS+   +LII             L   ++      F                  C + I+ A    QSLVDTREPYLMNPEYLLQITYILYTIIVDRSEIVARHLAVKIFRKIIQFCSSSNDYCHLEEQIIGSIWIEIVIQNLLCESTENENNDFIYDETCLEFLIQLLESSSSAINLSVSSNLWRSFSVWFVQHSLSDLPNNIAVLVCQLIIRLTSHSKLSCFSETEKICLLKKLASDNNYQDEFVLMKWEINPTELLRLIGDKLD+
Sbjct:  122 VHCNLTGDGRYKCVIIIKSLCIHSQKMLMAIANTNKGNFFRDFAMLLSVDDDFIQSVVCYVLNVLVDGIPVLVSCLNLVDISCRLVDIIVNRADINATGGESLCTNAAVLIILLLKHSESFHNHIMEIEQTSFVIRKLILLYDTNIVYAKYGIKILDLLLSSESNGLIVAHYFSQSSNITEYLFDLLITGKSLIPLVIKCLKAFVDCKIFCRTNICAYGLINVLRCCQNYIEAEHVKAHQLETALKFFNDILLNYNGTVMLFVNESTARNFLYLLTSIMNKSIKSLFLLGMQALIIFLNRYYSVRPFPYEQLIVYLDLFDTVNGKIFRQSNKGQASLNNKSFETMLKNRCVFINLHIDFIFELIRFATVDRSNIVLSEKIILQINSIHGFAYSIFFSTYLRYMMSLIKRKKYLYLLSVDKFLEVTHIVLCSSYNFVATKSSLQMIFPQLINSLFILKSEIRSENCAFNNDILETVILNLIEICTLDLHIDEQNWRKVVSKGMLSIIDCSREGLIVLCSAPQTDLSTCLTCFWLLGSLVELNVNSSTCSISDNEKLAMLESIENACTLKLLESLYCSPVIFSVKFIKLIKILLDTSDKSTSNIGHFYSDYLSNLCLSPNLMTPEVLNNLLVELSIVKILNRESVVCMEATQSIVYKSLTNSTIVNDQNISVIFNCNLLDLVNITILCFSAILNKDVNIINSLNSVLRLVDKSVKNLKEGTFEFSEIMAKKLIEKLWLIPDKLYLDEIFQSDDLRNILWQSLSVVFLCSSIYSETVPLLKITFLVSEFIKRASISEIEKEMIFKLMLKASLKDGSLNVRSQLISLLCNSGEGRLCVSITENDSVSM--FRLII------------NLTTQKRCMFPVSFY-----------------CNVLIIAANVK-QSLVDTREPYLMNPEYLLQITYILYTIIVDRSEIVARHLAVKIFRKIIQFCSSSNDYCHLEEQIIGSIWIEIVIQNLLCESTENENNDFIYDETCLEFLIQLLESSSSAINLSVSSNLWRSFSVWFVQHSLSDLPNNIAVLVCQLIIRLTSHSKLSCFSETEKICLLKKLASDNNYQDEFVLMKWEINPTELLRLIGDKLDV 1198

HSP 2 Score: 195.282 bits (495), Expect = 3.529e-50
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1 
Query:   22 MDSKSCLHNKNYECLLKTNCKLIRLCLKCLSTIFTNNELSRITRMKYFQECFELISNTLDIISNINGEHLCEIILDLSDYIKFETVDDYNDTCCQ 306
            MDSKSCLHNKNYECLLKTNCKLIRLCLKCLSTIFTNNELSRITRMKYFQECFELISNTLDIISNINGEHLCEIILDLSDYIKFETVDDYNDTCCQ
Sbjct:    1 MDSKSCLHNKNYECLLKTNCKLIRLCLKCLSTIFTNNELSRITRMKYFQECFELISNTLDIISNINGEHLCEIILDLSDYIKFETVDDYNDTCCQ 95

HSP 3 Score: 70.8626 bits (172), Expect = 6.228e-12
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 3 
Query: 2880 MFRLIINLTTQKRCMFPVSFYCNVLIIAANVKQ 2978
            MFRLIINLTTQKRCMFPVSFYCNVLIIAANVKQ
Sbjct:  965 MFRLIINLTTQKRCMFPVSFYCNVLIIAANVKQ 997
[Close]
BLAST of SMED30031796 vs. Planmine SMEST
Match: SMESG000011031.1 (SMESG000011031.1)

HSP 1 Score: 1993.01 bits (5162), Expect = 0.000e+0
Identity = 1051/1109 (94.77%), Postives = 1059/1109 (95.49%), Query Frame = 2 
Query:  308 VHCNLTGNGRYKCVIIIKSLCIHSQKMLMAIANTNKGNFFRDFAMLLSVDDDFIQSVVCYVLNVLVDGIPVLVSCLNLVDISCRLVDIIVNRADINATGGESLCTNAAVLIILLLKHSESFHNHIMEIEQTSFVIRKLILLYDTNIVYAKYGIKILDLLLSSESNGLIVAHYFSQSSNITEYLFDLLITGKSLIPLVIKCLKAFVDCKIFCRTNICAYGLINVLRCCQNYIEAEHVKAHQLETALKFFNDILLNYNGTVMLFVNESTARNFLYLLTSIMNKSIKSLFLLGMQALIIFLNRYYSVRPFPYEQLIVYLDLFDTVNGKIFRQSNKGQASLNNKSFETMLKNRCVFINLHIDFIFELIRFATVDRSNIVLSEKIILQINSIHGFAYSIFFSTYLRYMMSLIKRKKYLYLLSVDKFLEVTHIVLCSSYNFVATKSSLQMIFPQLINSLFILKSEIRSENCAFNNDILETVILNLIEICTLDLHIDEQNWRKVVSKGMLSIIDCSREGLIVLCSAPQTDLSTCLTCFWLLGSLVELNVNSSTCSISDNEKLAMLESIENACTLKLLESLYCSPVIFSVKFIKLIKILLDTSDKSTSNIGHFYSDYLSNLCLSPNLMTPEVLNNLLVELSIVKILNRESVVCMEATQSIVYKSLTNSTIVNDQNISVIFNCNLLDLVNITILCFSAILNKDVNIINSLNSVLRLVDKSVKNLKEGTFEFSEIMAKKLIEKLWLIPDKLYLDEIFQSDDLRNILWQSLSVVFLCSSIYSETVPLLKITFLVSEFIKRASISEIEKEMIFKLMLKASLKDGSLNVRSQLISLLCNSGEGRLCVSITENDSVSVKHIKLIIISTFVLDVSANYKLDHAEKVHVSGQFLLQCINHCCKRKTSLSQICGLTILHAIFDCQSLVDTREPYLMNPEXXXXXXXXXXXXXVDRSEIVARHLAVKIFRKIIQFCSSSNDYCHLEEQIIGSIWIEIVIQNLLCESTENENNDFIYDETCLEFLIQXXXXXXXXXXXXXXXXXWRSFSVWFVQHSLSDLPNNIAVLVCQLIIRLTSHSKLSCFSETEKICLLKKLASDNNYQDEFVLMKWEINPTELLRLIGDKLDM 3634
            VHCNLTG+GRYKCVIIIKSLCIHSQKMLMAIANTNKGNFFRDFAMLLSVDDDFIQSVVCYVLNVLVDGIPVLVSCLNLVDISCRLVDIIVNRADINATGGESLCTNAAVLIILLLKHSESFHNHIMEIEQTSFVIRKLILLYDTNIVYAKYGIKILDLLLSSESNGLIVAHYFSQSSNITEYLFDLLITGKSLIPLVIKCLKAFVDCKIFCRTNICAYGLINVLRCCQNYIEAEHVKAHQLETALKFFNDILLNYNGTVMLFVNESTARNFLYLLTSIMNKSIKSLFLLGMQALIIFLNRYYSVRPFPYEQLIVYLDLFDTVNGKIFRQSNKGQASLNNKSFETMLKNRCVFINLHIDFIFELIRFATVDRSNIVLSEKIILQINSIHGFAYSIFFSTYLRYMMSLIKRKKYLYLLSVDKFLEVTHIVLCSSYNFVATKSSLQMIFPQLINSLFILKSEIRSENCAFNNDILETVILNLIEICTLDLHIDEQNWRKVVSKGMLSIIDCSREGLIVLCSAPQTDLSTCLTCFWLLGSLVELNVNSSTCSISDNEKLAMLESIENACTLKLLESLYCSPVIFSVKFIKLIKILLDTSDKSTSNIGHFYSDYLSNLCLSPNLMTPEVLNNLLVELSIVKILNRESVVCMEATQSIVYKSLTNSTIVNDQNISVIFNCNLLDLVNITILCFSAILNKDVNIINSLNSVLRLVDKSVKNLKEGTFEFSEIMAKKLIEKLWLIPDKLYLDEIFQSDDLRNILWQSLSVVFLCSSIYSETVPLLKITFLVSEFIKRASISEIEKEMIFKLMLKASLKDGSLNVRSQLISLLCNSGEGRLCVSITENDSVS+   +LII             L   ++      F                  C + I+ A    QSLVDTREPYLMNPEYLLQITYILYTIIVDRSEIVARHLAVKIFRKIIQFCSSSNDYCHLEEQIIGSIWIEIVIQNLLCESTENENNDFIYDETCLEFLIQLLESSSSAINLSVSSNLWRSFSVWFVQHSLSDLPNNIAVLVCQLIIRLTSHSKLSCFSETEKICLLKKLASDNNYQDEFVLMKWEINPTELLRLIGDKLD+
Sbjct:  120 VHCNLTGDGRYKCVIIIKSLCIHSQKMLMAIANTNKGNFFRDFAMLLSVDDDFIQSVVCYVLNVLVDGIPVLVSCLNLVDISCRLVDIIVNRADINATGGESLCTNAAVLIILLLKHSESFHNHIMEIEQTSFVIRKLILLYDTNIVYAKYGIKILDLLLSSESNGLIVAHYFSQSSNITEYLFDLLITGKSLIPLVIKCLKAFVDCKIFCRTNICAYGLINVLRCCQNYIEAEHVKAHQLETALKFFNDILLNYNGTVMLFVNESTARNFLYLLTSIMNKSIKSLFLLGMQALIIFLNRYYSVRPFPYEQLIVYLDLFDTVNGKIFRQSNKGQASLNNKSFETMLKNRCVFINLHIDFIFELIRFATVDRSNIVLSEKIILQINSIHGFAYSIFFSTYLRYMMSLIKRKKYLYLLSVDKFLEVTHIVLCSSYNFVATKSSLQMIFPQLINSLFILKSEIRSENCAFNNDILETVILNLIEICTLDLHIDEQNWRKVVSKGMLSIIDCSREGLIVLCSAPQTDLSTCLTCFWLLGSLVELNVNSSTCSISDNEKLAMLESIENACTLKLLESLYCSPVIFSVKFIKLIKILLDTSDKSTSNIGHFYSDYLSNLCLSPNLMTPEVLNNLLVELSIVKILNRESVVCMEATQSIVYKSLTNSTIVNDQNISVIFNCNLLDLVNITILCFSAILNKDVNIINSLNSVLRLVDKSVKNLKEGTFEFSEIMAKKLIEKLWLIPDKLYLDEIFQSDDLRNILWQSLSVVFLCSSIYSETVPLLKITFLVSEFIKRASISEIEKEMIFKLMLKASLKDGSLNVRSQLISLLCNSGEGRLCVSITENDSVSM--FRLII------------NLTTQKRCMFPVSFY-----------------CNVLIIAANVK-QSLVDTREPYLMNPEYLLQITYILYTIIVDRSEIVARHLAVKIFRKIIQFCSSSNDYCHLEEQIIGSIWIEIVIQNLLCESTENENNDFIYDETCLEFLIQLLESSSSAINLSVSSNLWRSFSVWFVQHSLSDLPNNIAVLVCQLIIRLTSHSKLSCFSETEKICLLKKLASDNNYQDEFVLMKWEINPTELLRLIGDKLDV 1196

HSP 2 Score: 196.052 bits (497), Expect = 1.920e-50
Identity = 96/98 (97.96%), Postives = 96/98 (97.96%), Query Frame = 1 
Query:   22 MDSKSCLHNKNYECLLKTNCKLIRLCLKCLSTIFTNNELSRITRMKYFQECFELISNTLDIISNINGEHLCEIILDLSDYIKFETVDDYNDTCCQCAL 315
            MDSKSCLHNKNYECLLKTNCKLIRLCLKCLSTIFTNNELSRITRMKYFQECFELISNTLDIISNINGEHLCEIILDLSDYIKFETVDDYNDTCCQ  L
Sbjct:    1 MDSKSCLHNKNYECLLKTNCKLIRLCLKCLSTIFTNNELSRITRMKYFQECFELISNTLDIISNINGEHLCEIILDLSDYIKFETVDDYNDTCCQLIL 98

HSP 3 Score: 70.8626 bits (172), Expect = 6.069e-12
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 3 
Query: 2880 MFRLIINLTTQKRCMFPVSFYCNVLIIAANVKQ 2978
            MFRLIINLTTQKRCMFPVSFYCNVLIIAANVKQ
Sbjct:  963 MFRLIINLTTQKRCMFPVSFYCNVLIIAANVKQ 995
[Close]
BLAST of SMED30031796 vs. Planmine SMEST
Match: SMESG000011031.1 (SMESG000011031.1)

HSP 1 Score: 1992.62 bits (5161), Expect = 0.000e+0
Identity = 1050/1109 (94.68%), Postives = 1058/1109 (95.40%), Query Frame = 2 
Query:  308 VHCNLTGNGRYKCVIIIKSLCIHSQKMLMAIANTNKGNFFRDFAMLLSVDDDFIQSVVCYVLNVLVDGIPVLVSCLNLVDISCRLVDIIVNRADINATGGESLCTNAAVLIILLLKHSESFHNHIMEIEQTSFVIRKLILLYDTNIVYAKYGIKILDLLLSSESNGLIVAHYFSQSSNITEYLFDLLITGKSLIPLVIKCLKAFVDCKIFCRTNICAYGLINVLRCCQNYIEAEHVKAHQLETALKFFNDILLNYNGTVMLFVNESTARNFLYLLTSIMNKSIKSLFLLGMQALIIFLNRYYSVRPFPYEQLIVYLDLFDTVNGKIFRQSNKGQASLNNKSFETMLKNRCVFINLHIDFIFELIRFATVDRSNIVLSEKIILQINSIHGFAYSIFFSTYLRYMMSLIKRKKYLYLLSVDKFLEVTHIVLCSSYNFVATKSSLQMIFPQLINSLFILKSEIRSENCAFNNDILETVILNLIEICTLDLHIDEQNWRKVVSKGMLSIIDCSREGLIVLCSAPQTDLSTCLTCFWLLGSLVELNVNSSTCSISDNEKLAMLESIENACTLKLLESLYCSPVIFSVKFIKLIKILLDTSDKSTSNIGHFYSDYLSNLCLSPNLMTPEVLNNLLVELSIVKILNRESVVCMEATQSIVYKSLTNSTIVNDQNISVIFNCNLLDLVNITILCFSAILNKDVNIINSLNSVLRLVDKSVKNLKEGTFEFSEIMAKKLIEKLWLIPDKLYLDEIFQSDDLRNILWQSLSVVFLCSSIYSETVPLLKITFLVSEFIKRASISEIEKEMIFKLMLKASLKDGSLNVRSQLISLLCNSGEGRLCVSITENDSVSVKHIKLIIISTFVLDVSANYKLDHAEKVHVSGQFLLQCINHCCKRKTSLSQICGLTILHAIFDCQSLVDTREPYLMNPEXXXXXXXXXXXXXVDRSEIVARHLAVKIFRKIIQFCSSSNDYCHLEEQIIGSIWIEIVIQNLLCESTENENNDFIYDETCLEFLIQXXXXXXXXXXXXXXXXXWRSFSVWFVQHSLSDLPNNIAVLVCQLIIRLTSHSKLSCFSETEKICLLKKLASDNNYQDEFVLMKWEINPTELLRLIGDKLDM 3634
            VHCNLTG+GRYKCVIIIKSLCIHSQKMLMAIANTNKGNFFRDFAMLLSVDDDFIQSVVCYVLNVLVDGIPVLVSCLNLVDISCRLVDIIVNRADINATGGESLCTNAAVLIILLLKHSESFHNHIMEIEQTSFVIRKLILLYDTNIVYAKYGIKILDLLLSSESNGLIVAHYFSQSSNITEYLFDLLITGKSLIPLVIKCLKAFVDCKIFCRTNICAYGLINVLRCCQNYIEAEHVKAHQLETALKFFNDILLNYNGTVMLFVNESTARNFLYLLTSIMNKSIKSLFLLGMQALIIFLNRYYSVRPFPYEQLIVYLDLFDTVNGKIFRQSNKGQASLNNKSFETMLKNRCVFINLHIDFIFELIRFATVDRSNIVLSEKIILQINSIHGFAYSIFFSTYLRYMMSLIKRKKYLYLLSVDKFLEVTHIVLCSSYNFVATKSSLQMIFPQLINSLFILKSEIRSENCAFNNDILETVILNLIEICTLDLHIDEQNWRKVVSKGMLSIIDCSREGLIVLCSAPQTDLSTCLTCFWLLGSLVELNVNSSTCSISDNEKLAMLESIENACTLKLLESLYCSPVIFSVKFIKLIKILLDTSDKSTSNIGHFYSDYLSNLCLSPNLMTPEVLNNLLVELSIVKILNRESVVCMEATQSIVYKSLTNSTIVNDQNISVIFNCNLLDLVNITILCFSAILNKDVNIINSLNSVLRLVDKSVKNLKEGTFEFSEIMAKKLIEKLWLIPDKLYLDEIFQSDDLRNILWQSLSVVFLCSSIYSETVPLLKITFLVSEFIKRASISEIEKEMIFKLMLKASLKDGSLNVRSQLISLLCNSGEGRLCVSITENDSVS+   +LII             L   ++      F                  C + I+ A     SLVDTREPYLMNPEYLLQITYILYTIIVDRSEIVARHLAVKIFRKIIQFCSSSNDYCHLEEQIIGSIWIEIVIQNLLCESTENENNDFIYDETCLEFLIQLLESSSSAINLSVSSNLWRSFSVWFVQHSLSDLPNNIAVLVCQLIIRLTSHSKLSCFSETEKICLLKKLASDNNYQDEFVLMKWEINPTELLRLIGDKLD+
Sbjct:   78 VHCNLTGDGRYKCVIIIKSLCIHSQKMLMAIANTNKGNFFRDFAMLLSVDDDFIQSVVCYVLNVLVDGIPVLVSCLNLVDISCRLVDIIVNRADINATGGESLCTNAAVLIILLLKHSESFHNHIMEIEQTSFVIRKLILLYDTNIVYAKYGIKILDLLLSSESNGLIVAHYFSQSSNITEYLFDLLITGKSLIPLVIKCLKAFVDCKIFCRTNICAYGLINVLRCCQNYIEAEHVKAHQLETALKFFNDILLNYNGTVMLFVNESTARNFLYLLTSIMNKSIKSLFLLGMQALIIFLNRYYSVRPFPYEQLIVYLDLFDTVNGKIFRQSNKGQASLNNKSFETMLKNRCVFINLHIDFIFELIRFATVDRSNIVLSEKIILQINSIHGFAYSIFFSTYLRYMMSLIKRKKYLYLLSVDKFLEVTHIVLCSSYNFVATKSSLQMIFPQLINSLFILKSEIRSENCAFNNDILETVILNLIEICTLDLHIDEQNWRKVVSKGMLSIIDCSREGLIVLCSAPQTDLSTCLTCFWLLGSLVELNVNSSTCSISDNEKLAMLESIENACTLKLLESLYCSPVIFSVKFIKLIKILLDTSDKSTSNIGHFYSDYLSNLCLSPNLMTPEVLNNLLVELSIVKILNRESVVCMEATQSIVYKSLTNSTIVNDQNISVIFNCNLLDLVNITILCFSAILNKDVNIINSLNSVLRLVDKSVKNLKEGTFEFSEIMAKKLIEKLWLIPDKLYLDEIFQSDDLRNILWQSLSVVFLCSSIYSETVPLLKITFLVSEFIKRASISEIEKEMIFKLMLKASLKDGSLNVRSQLISLLCNSGEGRLCVSITENDSVSM--FRLII------------NLTTQKRCMFPVSFY-----------------CNVLIIAA----NSLVDTREPYLMNPEYLLQITYILYTIIVDRSEIVARHLAVKIFRKIIQFCSSSNDYCHLEEQIIGSIWIEIVIQNLLCESTENENNDFIYDETCLEFLIQLLESSSSAINLSVSSNLWRSFSVWFVQHSLSDLPNNIAVLVCQLIIRLTSHSKLSCFSETEKICLLKKLASDNNYQDEFVLMKWEINPTELLRLIGDKLDV 1151

HSP 2 Score: 108.997 bits (271), Expect = 1.513e-23
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:  154 MKYFQECFELISNTLDIISNINGEHLCEIILDLSDYIKFETVDDYNDTCCQ 306
            MKYFQECFELISNTLDIISNINGEHLCEIILDLSDYIKFETVDDYNDTCCQ
Sbjct:    1 MKYFQECFELISNTLDIISNINGEHLCEIILDLSDYIKFETVDDYNDTCCQ 51

HSP 3 Score: 65.4698 bits (158), Expect = 2.896e-10
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 3 
Query: 2880 MFRLIINLTTQKRCMFPVSFYCNVLIIAAN 2969
            MFRLIINLTTQKRCMFPVSFYCNVLIIAAN
Sbjct:  921 MFRLIINLTTQKRCMFPVSFYCNVLIIAAN 950
The following BLAST results are available for this feature:
BLAST of SMED30031796 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031796 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031796 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031796 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031796 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031796 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031796 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031796 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031796 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031796 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031796 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031796 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031796 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031796 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000011031.18.005e-2494.77SMESG000011031.1[more]
SMESG000011031.11.542e-2394.77SMESG000011031.1[more]
SMESG000011031.13.529e-5094.77SMESG000011031.1[more]
SMESG000011031.11.920e-5094.77SMESG000011031.1[more]
SMESG000011031.11.513e-2394.68SMESG000011031.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30031796 ID=SMED30031796|Name=SMED30031796|organism=Schmidtea mediterranea sexual|type=transcript|length=3971bp
AATAATTATAATAAAGAAATAATGGATTCTAAGTCGTGTCTTCATAATAA
GAATTATGAATGTTTACTAAAAACCAATTGTAAATTAATCAGATTATGTT
TGAAATGTTTATCTACAATTTTCACAAACAATGAACTTAGCAGAATTACA
CGAATGAAATATTTCCAAGAATGTTTTGAATTAATATCGAACACTTTAGA
TATAATTTCCAACATTAATGGTGAGCATTTATGCGAAATAATATTAGATT
TATCTGATTATATTAAATTCGAAACTGTTGATGATTATAATGATACATGC
TGCCAATGTGCATTGTAATTTAACTGGCAATGGGCGTTATAAATGCGTTA
TTATTATAAAATCATTATGTATTCATTCACAGAAGATGTTAATGGCGATT
GCCAATACTAATAAAGGGAATTTCTTCCGAGATTTTGCAATGTTGCTCAG
TGTGGATGACGATTTTATCCAATCAGTTGTTTGCTATGTATTGAATGTGT
TGGTAGATGGAATACCAGTGCTTGTTTCATGTCTGAATTTGGTGGATATA
TCCTGTCGACTGGTCGATATCATCGTCAATAGGGCTGATATAAATGCGAC
GGGTGGAGAGTCACTCTGTACCAATGCTGCAGTCCTTATTATCCTGCTGT
TAAAGCACAGTGAATCATTTCATAATCACATAATGGAAATCGAGCAAACA
TCATTTGTGATACGTAAATTGATCCTGTTGTACGATACGAACATCGTATA
TGCGAAATACGGAATAAAAATCCTCGATCTATTGTTATCCTCCGAGTCGA
ACGGTTTAATTGTCGCCCATTATTTTTCACAGTCCTCAAATATCACAGAG
TACTTATTTGACCTTCTAATCACTGGGAAAAGTCTAATACCGCTGGTTAT
CAAATGTCTCAAGGCATTTGTGGACTGTAAAATATTCTGCCGAACCAATA
TTTGTGCATACGGCTTGATAAATGTCCTAAGGTGTTGTCAGAATTATATC
GAGGCTGAACATGTTAAAGCCCACCAATTAGAAACTGCACTTAAATTTTT
CAATGATATTCTACTGAATTACAATGGTACTGTAATGCTTTTTGTCAATG
AGTCGACAGCAAGGAATTTTCTGTATTTGCTGACATCGATTATGAATAAA
TCAATCAAATCACTTTTTCTCCTGGGGATGCAAGCTCTAATAATATTCTT
AAATCGATATTATTCCGTGAGGCCGTTTCCATATGAACAGTTAATTGTTT
ATCTGGATTTATTTGATACCGTTAACGGAAAAATTTTCCGTCAGTCAAAT
AAGGGACAGGCGAGCTTAAACAACAAATCATTTGAGACTATGCTGAAAAA
TCGATGTGTCTTTATCAATCTACACATTGATTTCATATTTGAATTGATTA
GGTTTGCTACCGTTGACCGCTCTAATATAGTACTATCGGAAAAAATCATT
CTGCAAATCAATTCTATCCATGGATTTGCCTATTCTATTTTCTTCTCAAC
ATATTTGCGATACATGATGAGTTTAATTAAACGAAAAAAATACCTATATC
TTTTGTCGGTTGACAAATTCCTTGAAGTAACTCATATTGTATTGTGTTCC
TCGTACAATTTTGTTGCGACCAAGTCGTCGCTGCAAATGATTTTCCCTCA
GCTAATCAATTCTCTGTTCATATTGAAATCAGAAATCAGATCAGAAAATT
GCGCATTCAATAATGATATATTGGAGACTGTTATATTAAACCTAATTGAA
ATATGTACATTGGATTTGCACATTGACGAGCAAAACTGGAGGAAGGTCGT
TTCCAAAGGAATGTTATCAATCATTGACTGTTCCCGCGAAGGCCTGATTG
TGTTATGTAGTGCTCCCCAGACGGACTTGAGTACTTGCTTGACGTGTTTT
TGGTTACTTGGCAGCTTGGTAGAACTTAATGTCAATAGTTCCACTTGTTC
AATAAGTGACAATGAGAAACTTGCAATGCTGGAAAGCATCGAAAATGCGT
GCACATTGAAGCTTTTAGAAAGCCTTTATTGCAGCCCAGTGATATTCTCT
GTTAAATTTATCAAATTAATCAAGATATTATTGGATACCTCAGACAAATC
AACTTCTAATATCGGCCATTTCTATAGTGATTACTTATCCAACTTGTGCT
TGTCACCAAATCTCATGACTCCAGAAGTGTTGAATAATCTCCTAGTTGAA
TTGTCCATAGTGAAAATACTCAATAGAGAGTCGGTTGTTTGTATGGAAGC
GACTCAGTCGATAGTGTATAAATCTTTGACTAATTCAACTATTGTCAATG
ATCAGAATATATCTGTAATTTTTAATTGCAACCTACTCGATTTGGTGAAC
ATTACCATATTGTGCTTCAGCGCTATACTCAATAAAGATGTGAATATTAT
AAATTCTCTAAACTCTGTTTTGAGGCTCGTTGATAAATCTGTCAAGAATT
TAAAAGAAGGAACATTTGAGTTCTCTGAAATAATGGCAAAAAAATTAATT
GAGAAATTGTGGTTAATTCCTGACAAACTCTATTTAGATGAGATATTTCA
AAGTGATGACCTAAGAAATATTCTTTGGCAAAGTTTAAGTGTAGTTTTCC
TATGTTCATCAATATATTCCGAGACAGTTCCTTTATTAAAGATTACTTTC
CTTGTTTCTGAGTTCATTAAGCGAGCATCAATCAGTGAAATCGAAAAGGA
AATGATTTTCAAGTTAATGTTGAAAGCTTCATTGAAAGATGGAAGTTTAA
ATGTTCGATCGCAATTGATAAGCTTGCTCTGTAATAGTGGTGAAGGCAGA
CTGTGTGTGTCGATAACAGAAAACGACTCTGTATCGGTTAAACATATAAA
ATTGATAATTATATCAACTTTTGTGTTAGATGTTTCGGCTAATTATAAAC
TTGACCACGCAGAAAAGGTGCATGTTTCCGGTCAGTTTTTATTGCAATGT
ATTAATCATTGCTGCAAACGTAAAACAAGTCTTTCTCAAATTTGTGGACT
TACTATTTTACATGCTATTTTCGACTGCCAGTCTTTGGTTGACACTCGGG
AGCCTTATCTAATGAATCCGGAATATCTACTGCAGATTACATATATTCTC
TACACTATCATTGTTGATCGTTCTGAGATTGTTGCGAGACATTTAGCCGT
AAAAATATTTCGAAAAATCATTCAATTTTGTTCGTCGTCGAATGATTATT
GTCATTTGGAAGAACAAATCATTGGTAGCATTTGGATAGAAATAGTTATA
CAGAATCTACTATGTGAATCCACTGAAAACGAGAATAATGATTTCATATA
TGATGAAACATGTCTCGAGTTTCTAATCCAGCTGCTTGAGTCGTCAAGTT
CAGCCATTAATCTTTCTGTTTCATCAAATCTCTGGCGATCATTTTCAGTG
TGGTTTGTTCAGCATTCTCTTTCCGACCTGCCAAATAATATTGCCGTTCT
TGTCTGTCAATTAATTATTAGACTTACGAGTCATTCCAAACTTTCATGTT
TTAGTGAAACCGAAAAAATTTGCCTCCTCAAGAAATTGGCTAGCGATAAT
AATTATCAAGATGAATTTGTTTTAATGAAGTGGGAAATAAATCCCACTGA
ATTGCTCCGGCTTATTGGAGATAAACTAGATATGTTTATTGGCATTTTCG
TCATTCAGTGGAATTCAGATGGTTGGATGATGTTCTTTTCGAAGACCCGA
GGCGGAATTACTCGATGTTTATCATCTCTATGAAATGTTTGCTCTACATA
TTTATTCGCGATTTCCACTATACTTCACCAGTACAACTTCTCAGTTTGCC
CATATATCATGGTCGTCCCTGTGCTGGATGAGTCATTGCGATGTGATCTA
TCTTGTTCTACGCTGTTATGTTAAATGTCCGTGGAGTCGCGCAAGAAATA
TTATGCCAATGATTCTATTTGATTTTAGTGTGGACTCTTGGGTGTATCCT
AATCGGTGTTTACGCGTGGTG
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protein sequence of SMED30031796-orf-1

>SMED30031796-orf-1 ID=SMED30031796-orf-1|Name=SMED30031796-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=106bp
NNYNKEIMDSKSCLHNKNYECLLKTNCKLIRLCLKCLSTIFTNNELSRIT
RMKYFQECFELISNTLDIISNINGEHLCEIILDLSDYIKFETVDDYNDTC
CQCAL*
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protein sequence of SMED30031796-orf-2

>SMED30031796-orf-2 ID=SMED30031796-orf-2|Name=SMED30031796-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1151bp
MIIMIHAANVHCNLTGNGRYKCVIIIKSLCIHSQKMLMAIANTNKGNFFR
DFAMLLSVDDDFIQSVVCYVLNVLVDGIPVLVSCLNLVDISCRLVDIIVN
RADINATGGESLCTNAAVLIILLLKHSESFHNHIMEIEQTSFVIRKLILL
YDTNIVYAKYGIKILDLLLSSESNGLIVAHYFSQSSNITEYLFDLLITGK
SLIPLVIKCLKAFVDCKIFCRTNICAYGLINVLRCCQNYIEAEHVKAHQL
ETALKFFNDILLNYNGTVMLFVNESTARNFLYLLTSIMNKSIKSLFLLGM
QALIIFLNRYYSVRPFPYEQLIVYLDLFDTVNGKIFRQSNKGQASLNNKS
FETMLKNRCVFINLHIDFIFELIRFATVDRSNIVLSEKIILQINSIHGFA
YSIFFSTYLRYMMSLIKRKKYLYLLSVDKFLEVTHIVLCSSYNFVATKSS
LQMIFPQLINSLFILKSEIRSENCAFNNDILETVILNLIEICTLDLHIDE
QNWRKVVSKGMLSIIDCSREGLIVLCSAPQTDLSTCLTCFWLLGSLVELN
VNSSTCSISDNEKLAMLESIENACTLKLLESLYCSPVIFSVKFIKLIKIL
LDTSDKSTSNIGHFYSDYLSNLCLSPNLMTPEVLNNLLVELSIVKILNRE
SVVCMEATQSIVYKSLTNSTIVNDQNISVIFNCNLLDLVNITILCFSAIL
NKDVNIINSLNSVLRLVDKSVKNLKEGTFEFSEIMAKKLIEKLWLIPDKL
YLDEIFQSDDLRNILWQSLSVVFLCSSIYSETVPLLKITFLVSEFIKRAS
ISEIEKEMIFKLMLKASLKDGSLNVRSQLISLLCNSGEGRLCVSITENDS
VSVKHIKLIIISTFVLDVSANYKLDHAEKVHVSGQFLLQCINHCCKRKTS
LSQICGLTILHAIFDCQSLVDTREPYLMNPEYLLQITYILYTIIVDRSEI
VARHLAVKIFRKIIQFCSSSNDYCHLEEQIIGSIWIEIVIQNLLCESTEN
ENNDFIYDETCLEFLIQLLESSSSAINLSVSSNLWRSFSVWFVQHSLSDL
PNNIAVLVCQLIIRLTSHSKLSCFSETEKICLLKKLASDNNYQDEFVLMK
WEINPTELLRLIGDKLDMFIGIFVIQWNSDGWMMFFSKTRGGITRCLSSL
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002109X1 cell