SMED30031736

Overview


Name	SMED30031736
Smed ID	SMED30031736
Length (bp)	1776

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of SMED30031736 (SMED30031736) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30031736 (SMED30031736) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30031736 (SMED30031736) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30031736 (SMED30031736) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30031736

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 9

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
head region	SMED30031736	h1SMcG0001303	SmedASXL_014126	SmedAsxl_ww_GCZZ01	PMID:27034770 Currie et al., 2016
pharynx	SMED30031736	h1SMcG0001303	dd_Smed_v4_8185_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
protonephridia	SMED30031736	h1SMcG0001303	dd_Smed_v4_8185_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
nervous system	SMED30031736	h1SMcG0001303	dd_Smed_v4_8185_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
epidermis	SMED30031736	h1SMcG0001303	dd_Smed_v4_8185_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cephalic ganglia	SMED30031736	h1SMcG0001303	dd_Smed_v4_8185_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
head region	SMED30031736	h1SMcG0001303	dd_Smed_v6_8185_0_1	dd_Smed_v6	PMID:28171748 Stückemann et al., 2017
epidermis	SMED30031736	h1SMcG0001303	dd_Smed_v4_8185_0_1	dd_Smed_v4	PMID:28292427 Wurtzel et al., 2017
nervous system	SMED30031736	h1SMcG0001303	dd_Smed_v4_8185_0_1	dd_Smed_v4	PMID:30962434 Cote et al., 2019

Note: Hover over icons to view figure legend

Homology

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BLAST of SMED30031736 vs. TrEMBL
Match: A0A1I8I3W0 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.645e-8
Identity = 77/314 (24.52%), Postives = 132/314 (42.04%), Query Frame = 3

Query:  633 PKATLQVDQYGFLQFNNNGNLIYFCGARNIFSTNEAQLFCKLLCAENSTSPRIIQGINMTSLQNIPIGGFNNLSCPANATSLDDCS-NAFPFQSDQCTPSDNIGVACSVSSLVQDPL--PIVVCENNTLKLLWNRTIHPTILPTDVDIVYLNASCNNVIKSNLSDVLILSVSLNDCNGDVTGDLYNVIYSFGAKRTFPKINNIHIKDDQIFSPNCYITRNYIVIQG--PFSIKATSITDGTGSTDVTVSLGIFLDSNFVTVLPNLNLASKGTTVFVRISFXXXXXXXXXXXXECYVTDGN----TKVYLIQNRC 1547
            P+  L + Q G L  +N G +   C A   FS  EA   C++LC   + +   + G  +T+  + P+   + L CPA ATS +DC  N +      CTP+  + V CS  SL   P+  P VVC      + +  T   +     +   Y   +C N  K+  S  +  +V    CN   T +  +VIY+    R    ++ +++    I    C I +   V     P +  A  IT G   T        +    F + +   +    G+ ++ R+     P+N+ L +  C+ +D +       Y+++N+C
Sbjct: 1865 PEEGLVLIQNGSLGGDNFGTI---CAAG--FSAIEAATICRMLCRNETANAIGMSGKYLTTAASYPVM-LSGLKCPAGATSTNDCKHNGWGAAPSYCTPNTAVSVRCSQISLTPPPIPAPFVVCHLYVANVFFTYTDVASASLLSLYGTYNETTC-NFTKNENSTTVWATVPYIGCNSVQTTNATHVIYTSMLYRNVTAVSGVYVDVPYIIPVECAIPKLKEVTAALLPDARTAPPITGGDSYTSEVKLYRSYNARGFSSEIAPGDRLVVGSRIYARVR-ETSPLNVRLTVRNCWASDKSDGTGASYYVVRNKC 2170

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BLAST of SMED30031736 vs. TrEMBL
Match: A0A1I8GSG7 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.652e-8
Identity = 77/314 (24.52%), Postives = 132/314 (42.04%), Query Frame = 3

Query:  633 PKATLQVDQYGFLQFNNNGNLIYFCGARNIFSTNEAQLFCKLLCAENSTSPRIIQGINMTSLQNIPIGGFNNLSCPANATSLDDCS-NAFPFQSDQCTPSDNIGVACSVSSLVQDPL--PIVVCENNTLKLLWNRTIHPTILPTDVDIVYLNASCNNVIKSNLSDVLILSVSLNDCNGDVTGDLYNVIYSFGAKRTFPKINNIHIKDDQIFSPNCYITRNYIVIQG--PFSIKATSITDGTGSTDVTVSLGIFLDSNFVTVLPNLNLASKGTTVFVRISFXXXXXXXXXXXXECYVTDGN----TKVYLIQNRC 1547
            P+  L + Q G L  +N G +   C A   FS  EA   C++LC   + +   + G  +T+  + P+   + L CPA ATS +DC  N +      CTP+  + V CS  SL   P+  P VVC      + +  T   +     +   Y   +C N  K+  S  +  +V    CN   T +  +VIY+    R    ++ +++    I    C I +   V     P +  A  IT G   T        +    F + +   +    G+ ++ R+     P+N+ L +  C+ +D +       Y+++N+C
Sbjct: 1942 PEEGLVLIQNGSLGGDNFGTI---CAAG--FSAIEAATICRMLCRNETANAIGMSGKYLTTAASYPVM-LSGLKCPAGATSTNDCKHNGWGAAPSYCTPNTAVSVRCSQISLTPPPIPAPFVVCHLYVANVFFTYTDVASASLLSLYGTYNETTC-NFTKNENSTTVWATVPYIGCNSVQTTNATHVIYTSMLYRNVTAVSGVYVDVPYIIPVECAIPKLKEVTAALLPDARTAPPITGGDSYTSEVKLYRSYNARGFSSEIAPGDRLVVGSRIYARVR-ETSPLNVRLTVRNCWASDKSDGTGASYYVVRNKC 2247

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BLAST of SMED30031736 vs. TrEMBL
Match: A0A3R7CC15 (Deleted in malignant brain tumors 1 protein OS=Clonorchis sinensis OX=79923 GN=DMBT1 PE=4 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.406e-8
Identity = 118/528 (22.35%), Postives = 212/528 (40.15%), Query Frame = 3

Query:  156 KIFLMNYFLPILFMLDILGVIGQE------PGIRLIYFDPATKLYPGSNGVVILELNNGIKATICLNSSSVNDAQVACRSMNYXXXXXXXXXXXXXXXXXVKTKLAKTYFQNLQCNGD----EDSLEKCPGY----KFSNPVDFKCQNNNQDLSISCLYDYSFSKIKMPSE--------KCPKATLQV-------DQYGFLQFNN--NGNLIYFCGARNIFSTNEAQLFCKLLC--AENSTSPRIIQGINMTSLQNIPIGGFNNLSCPANATSLDDCSNAFPFQSDQ-CTPSDNIGVACSVSSLVQDPL---PIVVCENNTLKLLWNRTIHPTILPTDVDIV-YLNASCNNVIKSNLSDVLILSVSLNDCNGDVT-GDLYNVIYSFGAKRTFPK-----INNIHIKDDQIFSPNCYITR-NYI---VIQGPFSIKATSITDGTGSTD-VTVSLGIFLDSNFVTVLPNLNLASKGTTVFVRISFXXXXXXXXXXXXECYVT-----DGNTKVYLIQNRCPVLSTVQINP 1577
             +F +  FL  L++L I+ ++ Q+       GI+ + F P T LY      V+    NG   T+C        A VAC  M  T        S        +   ++    N  C G       SL     +     F++ V  +CQ++++  SI CL  Y+      P           C K +  +       D+ G +Q  +   G     C   +    + A+  C++LC  A+N    + +   +    + +PI   + + CP +AT L+ C+    + + + CT + ++G+ C+   +    +   P + C     ++ +++ ++P +  T + +V  +   C   +  N S +  + + L  C G ++  +  ++   F   R F       I+N  ++    FS  C I R N I   VI  P       ITD  G+T  V  SL +FLD  +   +        G  V+V++S  +P     L+L +C+ T         +  LI NRC     + ++P
Sbjct:   68 HLFKIMTFLRALYLL-IICILFQKIIDATIAGIKSVRFAPGTNLYEEGRDGVLEVYYNGTWGTVCNFGFDELAASVACFMMGLTPRGVAILNSP-------RRSDSQMLLSNFNCTGRLVLPSSSLSTATVHLGVCSFTDEVPERCQDSSRQTSIICLDTYTEMTTTTPVPNYMTVAPVDCSKPSSSIIRLVGGTDREGLVQIQHPETGEWGTICA--DGVDIHAARTLCRMLCTSADNLKYAQPVLYKHQEVDETVPI-HLSGIRCPEHATDLNQCTLGGGWGATRWCTHAMDVGLQCAPPQITAPAISYSPQLSCTRTDARVTYDKQVNPDLKTTMITLVGQVPVGCQFRVADNGSHIEAI-IPLEGCGGSLSLSNESDIAIKFELLRDFVAPSTGIISNFPVR----FSVTCLIPRINRIPSEVIASP-----QVITDLVGATQAVAASLKLFLDPAYSISVRQGQSIRPGQNVYVKVSLVDPKPVSKLILQDCWATISPERQSTPRQNLIINRCIAYDGLTVHP 574

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BLAST of SMED30031736 vs. TrEMBL
Match: A0A267F956 (Uncharacterized protein (Fragment) OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig024439g3 PE=4 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.614e-8
Identity = 73/292 (25.00%), Postives = 125/292 (42.81%), Query Frame = 3

Query:  723 FSTNEAQLFCKLLCAENSTSPRIIQGINMTSLQNIPIGGFNNLSCPANATSLDDCS-NAFPFQSDQCTPSDNIGVACSVSSLVQDPL--PIVVCENNTLKLLWNRTIHPTILPTDVDIVYLNASCNNVIKSNLSDVLILSVSLNDCNGDVTGDLYNVIYSFGAKRTFPKINNIHIKDDQIFSPNCYITRNYIVIQG--PFSIKATSITDGTGSTDVTVSLGIFLDSNFVTVLPNLNLASKGTTVFVRISFXXXXXXXXXXXXECYVT---DGNTKVY-LIQNRCPVLSTVQI 1571
            F  NEA +FC++LC   +T+   + G+  T     P+   + LSCPA ATS +DC+ N +   S  C+ +  + V C+  SL   P+  P V C N    + ++    P      +   Y  A+CN  +  N S+V  + +    CN   + +  +V Y+    +    +  +++    +    C I +   V     P +     +  G   T        ++  NF   +   +    GT V+VR+     P+NL LV+  C+ T   DG    Y L++++C    T  I
Sbjct:  110 FGVNEATMFCRMLCQNATTNAIGMTGLYRTVALAYPV-MLSGLSCPAGATSTNDCTHNGWGVASASCSQARAVTVRCAPVSLTAPPVPRPTVQCRNYQAFVYFSIADVPASWLLSLAGTYNAATCNFTVGQNGSNVWAI-IPYMGCNSVQSTNTTHVTYTSSLYKNVTMVGGVYLDTPYVMQIVCAIPKASDVTAALVPDARTVPPVESGDSYTSEVRIFRDYMSGNFRNEITPGSRLVVGTKVYVRVQV-TSPLNLRLVVNSCWATNRNDGTGSTYFLVKDKCASTGTTTI 398

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BLAST of SMED30031736 vs. TrEMBL
Match: A0A267GY16 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig024439g1 PE=4 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.771e-8
Identity = 73/292 (25.00%), Postives = 125/292 (42.81%), Query Frame = 3

Query:  723 FSTNEAQLFCKLLCAENSTSPRIIQGINMTSLQNIPIGGFNNLSCPANATSLDDCS-NAFPFQSDQCTPSDNIGVACSVSSLVQDPL--PIVVCENNTLKLLWNRTIHPTILPTDVDIVYLNASCNNVIKSNLSDVLILSVSLNDCNGDVTGDLYNVIYSFGAKRTFPKINNIHIKDDQIFSPNCYITRNYIVIQG--PFSIKATSITDGTGSTDVTVSLGIFLDSNFVTVLPNLNLASKGTTVFVRISFXXXXXXXXXXXXECYVT---DGNTKVY-LIQNRCPVLSTVQI 1571
            F  NEA +FC++LC   +T+   + G+  T     P+   + LSCPA ATS +DC+ N +   S  C+ +  + V C+  SL   P+  P V C N    + ++    P      +   Y  A+CN  +  N S+V  + +    CN   + +  +V Y+    +    +  +++    +    C I +   V     P +     +  G   T        ++  NF   +   +    GT V+VR+     P+NL LV+  C+ T   DG    Y L++++C    T  I
Sbjct:  201 FGVNEATMFCRMLCQNATTNAIGMTGLYRTVALAYPV-MLSGLSCPAGATSTNDCTHNGWGVASASCSQARAVTVRCAPVSLTAPPVPRPTVQCRNYQAFVYFSIADVPASWLLSLAGTYNAATCNFTVGQNGSNVWAI-IPYMGCNSVQSTNTTHVTYTSSLYKNVTMVGGVYLDTPYVMQIVCAIPKASDVTAALVPDARTVPPVESGDSYTSEVRIFRDYMSGNFRNEITPGSRLVVGTKVYVRVQV-TSPLNLRLVVNSCWATNRNDGTGSTYFLVKDKCASTGTTTI 489

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BLAST of SMED30031736 vs. Ensembl Medaka
Match: ENSORLT00000041321.1 (pep primary_assembly:ASM223467v1:20:9691535:9815960:1 gene:ENSORLG00000028284.1 transcript:ENSORLT00000041321.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 56.225 bits (134), Expect = 7.553e-8
Identity = 52/220 (23.64%), Postives = 92/220 (41.82%), Query Frame = 3

Query:  303 LNNGIKATICLNSSSVNDAQVACRSMNYXXXXXXXXXXXXXXXXXVKTKLAKTYFQNLQCNGDEDSLEKCP--GYKFSNPVDFKCQNNNQDLSISCLYDYSFSKIKMPSEKCPKATLQVDQYGFLQFNNNGNLIYFCGARNIFSTNEAQLFCKLLCAENSTSPRIIQGINMTSLQNIPIGGFNNLSCPANATSLDDCSNAFPFQSDQCTPSDNIGVACSV 956
            L++G+  T+C +  S+NDA+V CR ++        +A      +       K +  +++C+G E SL +C   GY   N       N+ +D  + C  +    ++      C    ++V Q        NG+    C   N +  N+A + CK +    + +     G    S Q        N++C  +  SL +CS+   F+  QC  S + GV C +
Sbjct:  670 LHDGVWGTVCHDKWSINDAKVVCRQLS------CGTALHAPRSALFGQGSDKIWLDDVECSGSESSLTQCGHNGYGKHNC------NHGEDAGVICSGEI---RLAGSGSTCCSGRVEVKQ--------NGSWATVC--YNGWDLNDANVVCKEMGCGPALTATESAGFGQGSGQIW----LKNVTCSGSEMSLTECSHRV-FEKHQCNHSKDAGVICQI 859

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BLAST of SMED30031736 vs. Ensembl Medaka
Match: ENSORLT00000027896.1 (pep primary_assembly:ASM223467v1:20:9689232:9803157:1 gene:ENSORLG00000028284.1 transcript:ENSORLT00000027896.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 51.6026 bits (122), Expect = 2.069e-6
Identity = 50/215 (23.26%), Postives = 88/215 (40.93%), Query Frame = 3

Query:  303 LNNGIKATICLNSSSVNDAQVACRSMNYXXXXXXXXXXXXXXXXXVKTKLAKTYFQNLQCNGDEDSLEKCP--GYKFSNPVDFKCQNNNQDLSISCLYDYSFSKIKMPSEKCPKATLQVDQYGFLQFNNNGNLIYFCGARNIFSTNEAQLFCKLLCAENSTSPRIIQGINMTSLQNIPIGGFNNLSCPANATSLDDCSNAFPFQSDQCTPSDNIG 941
            L++G+  T+C +  S+NDA+V CR ++        +A      +       K +  +++C+G E SL +C   GY   N       N+ +D  + C       ++      C    ++V Q        NG+    C   N +  N+A + CK +    + +     G    S Q        N++C  +  SL +CS+   F+  QC  S + G
Sbjct:  804 LHDGVWGTVCHDKWSINDAKVVCRQLS------CGTALHAPRSALFGQGSDKIWLDDVECSGSESSLTQCGHNGYGKHNC------NHGEDAGVICEI-----RLAGSGSTCCSGRVEVKQ--------NGSWATVC--YNGWDLNDANVVCKEMGCGPALTATESAGFGQGSGQIW----LKNVTCSGSEMSLTECSHRV-FEKHQCNHSKDAG 986

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BLAST of SMED30031736 vs. Planmine SMEST
Match: SMESG000019122.1 (SMESG000019122.1)

HSP 1 Score: 896.345 bits (2315), Expect = 0.000e+0
Identity = 502/511 (98.24%), Postives = 506/511 (99.02%), Query Frame = 3

Query:  168 MNYFLPILFMLDILGVIGQEPGIRLIYFDPATKLYPGSNGVVILELNNGIKATICLNSSSVNDAQVACRSMNYXXXXXXXXXXXXXXXXXVKTKLAKTYFQNLQCNGDEDSLEKCPGYKFSNPVDFKCQNNNQDLSISCLYDYSFSKIKMPSEKCPKATLQVDQYGFLQFNNNGNLIYFCGARNIFSTNEAQLFCKLLCAENSTSPRIIQGINMTSLQNIPIGGFNNLSCPANATSLDDCSNAFPFQSDQCTPSDNIGVACSVSSLVQDPLPIVVCENNTLKLLWNRTIHPTILPTDVDIVYLNASCNNVIKSNLSDVLILSVSLNDCNGDVTGDLYNVIYSFGAKRTFPKINNIHIKDDQIFSPNCYITRNYIVIQGPFSIKATSITDGTGSTDVTVSLGIFLDSNFVTVLPNLNLASKGTTVFVRISFXXXXXXXXXXXXECYVTDGNTKVYLIQNRCPVLSTVQINPXXXXXXXXXXXXXXXXXXXXQNLVCQTSKCGKNEIGCITKC 1700
            MNYFLPILFMLDILGVIGQEPGIRLIYFDPATKLYPGSNGVVILELNNGIKATICLNSSSV DAQVACRSMNYTSSQKTSSASSFAFISSVKTKLAKTYFQNLQCNGDEDSLEKCPGYKFSNPVDFKCQNNNQDLSISCLYDYSFS IKMPS+KCP ATLQVDQYGFLQFNNNG+LIYFCG+RNIFSTNEAQLFCKLLCAENSTSPRIIQGINMTSLQNIPIGGFNNLSCPANATSLDDCSNAFPFQSDQCTPSDNIGVACSVSSLVQDPLPI VCENNTLKLLWNRTIHPTILPTDVDIVYLNASCNNVIKSNLSDVLILSVSLNDCNGDVTGDLYNVIYSFGAKRTFPKINNI IKDDQIFSPNCYITRNYIVIQGPFSIKATSITDGTGSTDVTVSLGIFLDSNFVTVLPNLNLASKGTTVFVRISF+NPPVNLVLVLVECYVTDGNTKVYLIQNRCPVLSTVQINPISDSVSSFNFVSFSISGSSNQNLVCQTSKCGKNEIGCITKC
Sbjct:    1 MNYFLPILFMLDILGVIGQEPGIRLIYFDPATKLYPGSNGVVILELNNGIKATICLNSSSVKDAQVACRSMNYTSSQKTSSASSFAFISSVKTKLAKTYFQNLQCNGDEDSLEKCPGYKFSNPVDFKCQNNNQDLSISCLYDYSFSNIKMPSKKCPTATLQVDQYGFLQFNNNGSLIYFCGSRNIFSTNEAQLFCKLLCAENSTSPRIIQGINMTSLQNIPIGGFNNLSCPANATSLDDCSNAFPFQSDQCTPSDNIGVACSVSSLVQDPLPIAVCENNTLKLLWNRTIHPTILPTDVDIVYLNASCNNVIKSNLSDVLILSVSLNDCNGDVTGDLYNVIYSFGAKRTFPKINNIQIKDDQIFSPNCYITRNYIVIQGPFSIKATSITDGTGSTDVTVSLGIFLDSNFVTVLPNLNLASKGTTVFVRISFDNPPVNLVLVLVECYVTDGNTKVYLIQNRCPVLSTVQINPISDSVSSFNFVSFSISGSSNQNLVCQTSKCGKNEIGCITKC 511

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BLAST of SMED30031736 vs. Planmine SMEST
Match: SMESG000019122.1 (SMESG000019122.1)

HSP 1 Score: 878.626 bits (2269), Expect = 0.000e+0
Identity = 493/502 (98.21%), Postives = 497/502 (99.00%), Query Frame = 3

Query:  195 MLDILGVIGQEPGIRLIYFDPATKLYPGSNGVVILELNNGIKATICLNSSSVNDAQVACRSMNYXXXXXXXXXXXXXXXXXVKTKLAKTYFQNLQCNGDEDSLEKCPGYKFSNPVDFKCQNNNQDLSISCLYDYSFSKIKMPSEKCPKATLQVDQYGFLQFNNNGNLIYFCGARNIFSTNEAQLFCKLLCAENSTSPRIIQGINMTSLQNIPIGGFNNLSCPANATSLDDCSNAFPFQSDQCTPSDNIGVACSVSSLVQDPLPIVVCENNTLKLLWNRTIHPTILPTDVDIVYLNASCNNVIKSNLSDVLILSVSLNDCNGDVTGDLYNVIYSFGAKRTFPKINNIHIKDDQIFSPNCYITRNYIVIQGPFSIKATSITDGTGSTDVTVSLGIFLDSNFVTVLPNLNLASKGTTVFVRISFXXXXXXXXXXXXECYVTDGNTKVYLIQNRCPVLSTVQINPXXXXXXXXXXXXXXXXXXXXQNLVCQTSKCGKNEIGCITKC 1700
            MLDILGVIGQEPGIRLIYFDPATKLYPGSNGVVILELNNGIKATICLNSSSV DAQVACRSMNYTSSQKTSSASSFAFISSVKTKLAKTYFQNLQCNGDEDSLEKCPGYKFSNPVDFKCQNNNQDLSISCLYDYSFS IKMPS+KCP ATLQVDQYGFLQFNNNG+LIYFCG+RNIFSTNEAQLFCKLLCAENSTSPRIIQGINMTSLQNIPIGGFNNLSCPANATSLDDCSNAFPFQSDQCTPSDNIGVACSVSSLVQDPLPI VCENNTLKLLWNRTIHPTILPTDVDIVYLNASCNNVIKSNLSDVLILSVSLNDCNGDVTGDLYNVIYSFGAKRTFPKINNI IKDDQIFSPNCYITRNYIVIQGPFSIKATSITDGTGSTDVTVSLGIFLDSNFVTVLPNLNLASKGTTVFVRISF+NPPVNLVLVLVECYVTDGNTKVYLIQNRCPVLSTVQINPISDSVSSFNFVSFSISGSSNQNLVCQTSKCGKNEIGCITKC
Sbjct:    1 MLDILGVIGQEPGIRLIYFDPATKLYPGSNGVVILELNNGIKATICLNSSSVKDAQVACRSMNYTSSQKTSSASSFAFISSVKTKLAKTYFQNLQCNGDEDSLEKCPGYKFSNPVDFKCQNNNQDLSISCLYDYSFSNIKMPSKKCPTATLQVDQYGFLQFNNNGSLIYFCGSRNIFSTNEAQLFCKLLCAENSTSPRIIQGINMTSLQNIPIGGFNNLSCPANATSLDDCSNAFPFQSDQCTPSDNIGVACSVSSLVQDPLPIAVCENNTLKLLWNRTIHPTILPTDVDIVYLNASCNNVIKSNLSDVLILSVSLNDCNGDVTGDLYNVIYSFGAKRTFPKINNIQIKDDQIFSPNCYITRNYIVIQGPFSIKATSITDGTGSTDVTVSLGIFLDSNFVTVLPNLNLASKGTTVFVRISFDNPPVNLVLVLVECYVTDGNTKVYLIQNRCPVLSTVQINPISDSVSSFNFVSFSISGSSNQNLVCQTSKCGKNEIGCITKC 502

[Close]

BLAST of SMED30031736 vs. Planmine SMEST
Match: SMESG000001182.1 (SMESG000001182.1)

HSP 1 Score: 243.047 bits (619), Expect = 4.176e-73
Identity = 177/512 (34.57%), Postives = 266/512 (51.95%), Query Frame = 3

Query:  189 LFMLDILGVIG-QEPGIRLIYFDPATKLYPGS-NGVVILELNNGIKATICLN-SSSVNDAQVACRSMNYXXXXXXXXXXXXXXXXXVKTKLAKTYFQNLQCNGDEDSLEKCPGYKFSNPVDFKCQNNNQDLSISCLYDYSF--SKIKMPSEKCPKATLQVDQYGFLQFNNNGNLIYFCGARNIFSTNEAQLFCKLLCAENSTSPRIIQGINMTSLQNIPIGGFNNLSCPANATSLDDCSNAFPFQSDQCTPSDNIGVACSVSSLVQDPLPIVVCENNTLKLLWNRTIHPTILPTDVDIVYLNASCNNVIKSNLSDVLILSVSLNDCNGDVTGDLYNVIYSFGAKRTFPKI-NNIHIKDDQIFSPNCYITRNYIVIQGPFSIKATSITDGTGS-TDVTVSLGIFLDSNFVTVLPNLNLASKGTTVFVRISFXXXXXXXXXXXXECYVTDGNTKVYLIQNRCPVLSTVQINPXXXXXXXXXXXXXXXXXXXXQNLV-CQTSKCGKNEIGCITKC 1700
            +F +D+  ++      I+ IYFDP T +     +GV+++E   GI++TIC+N  S+  +A+V CR M Y       SA +        T    T+FQN++C+G E +L+ C G+++ +  DF C N+NQD+ + CL  + F  S I +    C    L     GF+       L        IF     Q        E+++  RII+G          IGGF N+ CP+NA SL +C N +P+ +++CTPSDNIG+ CS +  + D  P V C + TL L WN+TIH  I P  V+++  N  C+NV    +   + LSV   +C     GD   +IYSF  KRT+PK+ NNI IK+DQ +   C I+R        FSI AT+     G+ T +  ++ +  +  F   L N+     G+ +FV+++  NPP  LV  L  C++  GN K  LI N+CP    V I+PI +    F+F SF+I  +++   + C TS CG+   GCI  C
Sbjct:    4 VFNIDLFDILTTSHSDIKQIYFDPETTMSESKQDGVIVVETLTGIRSTICMNVESATQNAEVICRMMGYKEIIGKPSAVALISSKK-STFSNGTFFQNVKCSGSEKNLKDCSGFRYYHKTDFICSNHNQDMHVFCLGQHKFVNSTINLLKSNC-TGNLFAIHSGFIALFKQ--LFMLVAILEIFHLQYLQ--------EDTSYARIIEGFYSPGAS---IGGFKNMKCPSNANSLSECVNVYPYDNERCTPSDNIGLICSYNPDITDANPQVHCNSTTLSLFWNKTIHEEIKPEFVNVMENNKPCSNV---RIDSSVKLSVDYINCGMAKQGDKDKIIYSFQVKRTYPKLNNNIIIKNDQFYQVQCLISRFDNTTTADFSISATADLPIIGNDTPIPTTMIVSANDRFYPNLLNIKDVEIGSEIFVKVTLINPPSQLVPFLDSCWIESGNVKEPLILNKCPARQKVLISPIDNVTIMFSFKSFAIGSTADSAFIKCVTSLCGRQSTGCIPTC 497

[Close]

BLAST of SMED30031736 vs. Planmine SMEST
Match: SMESG000001182.1 (SMESG000001182.1)

HSP 1 Score: 243.047 bits (619), Expect = 4.483e-73
Identity = 177/512 (34.57%), Postives = 266/512 (51.95%), Query Frame = 3

Query:  189 LFMLDILGVIG-QEPGIRLIYFDPATKLYPGS-NGVVILELNNGIKATICLN-SSSVNDAQVACRSMNYXXXXXXXXXXXXXXXXXVKTKLAKTYFQNLQCNGDEDSLEKCPGYKFSNPVDFKCQNNNQDLSISCLYDYSF--SKIKMPSEKCPKATLQVDQYGFLQFNNNGNLIYFCGARNIFSTNEAQLFCKLLCAENSTSPRIIQGINMTSLQNIPIGGFNNLSCPANATSLDDCSNAFPFQSDQCTPSDNIGVACSVSSLVQDPLPIVVCENNTLKLLWNRTIHPTILPTDVDIVYLNASCNNVIKSNLSDVLILSVSLNDCNGDVTGDLYNVIYSFGAKRTFPKI-NNIHIKDDQIFSPNCYITRNYIVIQGPFSIKATSITDGTGS-TDVTVSLGIFLDSNFVTVLPNLNLASKGTTVFVRISFXXXXXXXXXXXXECYVTDGNTKVYLIQNRCPVLSTVQINPXXXXXXXXXXXXXXXXXXXXQNLV-CQTSKCGKNEIGCITKC 1700
            +F +D+  ++      I+ IYFDP T +     +GV+++E   GI++TIC+N  S+  +A+V CR M Y       SA +        T    T+FQN++C+G E +L+ C G+++ +  DF C N+NQD+ + CL  + F  S I +    C    L     GF+       L        IF     Q        E+++  RII+G          IGGF N+ CP+NA SL +C N +P+ +++CTPSDNIG+ CS +  + D  P V C + TL L WN+TIH  I P  V+++  N  C+NV    +   + LSV   +C     GD   +IYSF  KRT+PK+ NNI IK+DQ +   C I+R        FSI AT+     G+ T +  ++ +  +  F   L N+     G+ +FV+++  NPP  LV  L  C++  GN K  LI N+CP    V I+PI +    F+F SF+I  +++   + C TS CG+   GCI  C
Sbjct:    6 VFNIDLFDILTTSHSDIKQIYFDPETTMSESKQDGVIVVETLTGIRSTICMNVESATQNAEVICRMMGYKEIIGKPSAVALISSKK-STFSNGTFFQNVKCSGSEKNLKDCSGFRYYHKTDFICSNHNQDMHVFCLGQHKFVNSTINLLKSNC-TGNLFAIHSGFIALFKQ--LFMLVAILEIFHLQYLQ--------EDTSYARIIEGFYSPGAS---IGGFKNMKCPSNANSLSECVNVYPYDNERCTPSDNIGLICSYNPDITDANPQVHCNSTTLSLFWNKTIHEEIKPEFVNVMENNKPCSNV---RIDSSVKLSVDYINCGMAKQGDKDKIIYSFQVKRTYPKLNNNIIIKNDQFYQVQCLISRFDNTTTADFSISATADLPIIGNDTPIPTTMIVSANDRFYPNLLNIKDVEIGSEIFVKVTLINPPSQLVPFLDSCWIESGNVKEPLILNKCPARQKVLISPIDNVTIMFSFKSFAIGSTADSAFIKCVTSLCGRQSTGCIPTC 499

[Close]

BLAST of SMED30031736 vs. Planmine SMEST
Match: SMESG000052890.1 (SMESG000052890.1)

HSP 1 Score: 240.35 bits (612), Expect = 2.499e-72
Identity = 177/510 (34.71%), Postives = 265/510 (51.96%), Query Frame = 3

Query:  189 LFMLDILGVIG-QEPGIRLIYFDPATKLYPGS-NGVVILELNNGIKATICLN-SSSVNDAQVACRSMNYXXXXXXXXXXXXXXXXXVKTKLAKTYFQNLQCNGDEDSLEKCPGYKFSNPVDFKCQNNNQDLSISCLYDYSFSKIKMPSEKCPKATLQVDQYGFLQFNNNGNLIYFCGARNIFSTNEAQLFCKLLCAENSTSPRIIQGINMTSLQNIPIGGFNNLSCPANATSLDDCSNAFPFQSDQCTPSDNIGVACSVSSLVQDPLPIVVCENNTLKLLWNRTIHPTILPTDVDIVYLNASCNNVIKSNLSDVLILSVSLNDCNGDVTGDLYNVIYSFGAKRTFPKI-NNIHIKDDQIFSPNCYITRNYIVIQGPFSIKATSITDGTGS-TDVTVSLGIFLDSNFVTVLPNLNLASKGTTVFVRISFXXXXXXXXXXXXECYVTDGNTKVYLIQNRCPVLSTVQINPXXXXXXXXXXXXXXXXXXXXQNLV-CQTSKCGKNEIGCITKC 1700
            +F +D+  ++      I+ IYFDP T +     +GV+++E   GI++TIC+N  S+  +A+V CR M Y       SA +        T    T+FQN++C+G E +L+ C G+++ +  DF C N+NQD+ + CL  + F    +                 L+ N  GNL       + F     QLF        ++  RII+G          IGGF N+ CP+NA SL +C N +P+ +++CTPSDNIG+ CS +S + D  P V C + TL L WN+TIH  I P  V+++  N  C+NV    +   + LSV   DC     GD   +IYSF  KRT+PK+ NNI IK+DQ +   C I+R        FSI AT+     G+ T +  ++ +  +  F   L N+     G+ +FV+++  NPP  LV  L  C++  GN K  LI N+CP    V I+PI +    F+F SF+I  +++   + C TS CG+   GCI  C
Sbjct:    6 VFNIDLFDILTTSHSDIKQIYFDPETTMSESKQDGVIVVETLTGIRSTICMNVESATQNAEVICRMMGYKEIIGKPSAVALISSKK-STFSNGTFFQNVKCSGSEKNLKDCSGFRYYHKTDFICSNHNQDMHVFCLGQHKFVNSTI---------------NLLKSNCTGNLF---AIHSGFIALFKQLFL-------TSYARIIEGFYSPGAS---IGGFKNMKCPSNANSLSECVNVYPYDNERCTPSDNIGLICSYNSDITDANPQVHCNSTTLSLFWNKTIHEEIRPEFVNVMENNKPCSNV---RIDSSVKLSVDYIDCGMAKQGDKDKIIYSFQVKRTYPKLNNNIIIKNDQFYQVQCLISRFDNTTTADFSISATADLPIIGNDTPIPTTMIVSANDRFYPNLLNIKDVEIGSEIFVKVTLINPPSQLVPFLDSCWIESGNVKEPLILNKCPARQKVLISPIDNVTIMFSFKSFAIGSTADSAFIKCVTSLCGRQSTGCIPTC 483

The following BLAST results are available for this feature:

BLAST of SMED30031736 vs. Ensembl Human
BLAST of SMED30031736 vs. Ensembl Celegans
BLAST of SMED30031736 vs. Ensembl Fly
BLAST of SMED30031736 vs. Ensembl Zebrafish
BLAST of SMED30031736 vs. Ensembl Xenopus
BLAST of SMED30031736 vs. Ensembl Mouse
BLAST of SMED30031736 vs. UniProt/SwissProt
BLAST of SMED30031736 vs. TrEMBL
BLAST of SMED30031736 vs. Ensembl Cavefish
BLAST of SMED30031736 vs. Ensembl Sea Lamprey
BLAST of SMED30031736 vs. Ensembl Yeast
BLAST of SMED30031736 vs. Ensembl Nematostella
BLAST of SMED30031736 vs. Ensembl Medaka
BLAST of SMED30031736 vs. Planmine SMEST

BLAST of SMED30031736 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30031736 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30031736 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30031736 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30031736 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30031736 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30031736 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30031736 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A1I8I3W0	1.645e-8	24.52	Uncharacterized protein OS=Macrostomum lignano OX=...	[more]
A0A1I8GSG7	1.652e-8	24.52	Uncharacterized protein OS=Macrostomum lignano OX=...	[more]
A0A3R7CC15	3.406e-8	22.35	Deleted in malignant brain tumors 1 protein OS=Clo...	[more]
A0A267F956	7.614e-8	25.00	Uncharacterized protein (Fragment) OS=Macrostomum ...	[more]
A0A267GY16	8.771e-8	25.00	Uncharacterized protein OS=Macrostomum lignano OX=...	[more]

BLAST of SMED30031736 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30031736 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30031736 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30031736 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30031736 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 2


Match Name	E-value	Identity	Description
ENSORLT00000041321.1	7.553e-8	23.64	pep primary_assembly:ASM223467v1:20:9691535:981596...	[more]
ENSORLT00000027896.1	2.069e-6	23.26	pep primary_assembly:ASM223467v1:20:9689232:980315...	[more]

BLAST of SMED30031736 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000019122.1	0.000e+0	98.24	SMESG000019122.1	[more]
SMESG000019122.1	0.000e+0	98.21	SMESG000019122.1	[more]
SMESG000001182.1	4.176e-73	34.57	SMESG000001182.1	[more]
SMESG000001182.1	4.483e-73	34.57	SMESG000001182.1	[more]
SMESG000052890.1	2.499e-72	34.71	SMESG000052890.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30031736 ID=SMED30031736|Name=SMED30031736|organism=Schmidtea mediterranea sexual|type=transcript|length=1776bp
CACCTATTCAACCTTTCATAAATATTATGCTTAATTAAGAACCAAATATT
TGAAAATCGGATTTTATTAACTTAAAAATATTATTTTTTTGATTATAACT
CAATTCAATTTTAAGAATTTTTCTCAAAAAAACTTTTCAAGACCTTTGAT
AAAATAAAATATTTTTAATGAATTATTTTCTACCAATTTTATTTATGCTT
GATATTTTAGGCGTCATTGGACAAGAACCAGGAATCCGTTTGATTTATTT
TGATCCTGCAACAAAATTATATCCCGGTAGTAATGGAGTTGTGATTTTAG
AGTTGAACAATGGAATTAAAGCTACAATTTGTCTAAATTCAAGTAGCGTA
AACGATGCCCAAGTTGCATGCAGATCGATGAATTATACTTCGTCCCAAAA
AACATCAAGTGCGTCTAGTTTCGCCTTTATATCATCAGTCAAGACAAAAT
TAGCAAAAACCTATTTTCAAAACCTTCAATGTAATGGAGATGAAGATTCA
TTAGAGAAATGCCCGGGATATAAGTTCTCGAATCCTGTGGATTTTAAATG
TCAAAATAATAACCAAGATCTCAGCATCAGTTGCCTTTACGATTACAGTT
TTTCAAAAATTAAAATGCCCTCTGAAAAATGTCCTAAGGCTACCTTACAA
GTTGACCAGTATGGTTTCTTACAATTCAACAACAATGGGAATTTAATTTA
TTTCTGTGGAGCTAGAAACATATTCAGTACCAATGAAGCTCAATTGTTTT
GTAAACTTTTGTGCGCTGAAAATTCTACATCTCCTCGAATAATTCAAGGA
ATCAATATGACATCTTTACAAAATATACCAATAGGAGGTTTCAATAACTT
ATCCTGCCCAGCAAATGCAACTTCATTGGATGATTGTTCCAATGCGTTTC
CTTTTCAAAGTGACCAATGCACACCTTCGGATAATATTGGTGTGGCTTGT
TCTGTATCATCGCTAGTTCAAGATCCGTTGCCCATCGTCGTATGCGAAAA
CAATACTTTGAAGTTATTATGGAATCGAACTATTCATCCGACAATTCTTC
CGACGGATGTTGACATTGTATACTTAAACGCATCTTGCAACAATGTGATC
AAATCCAATTTGTCAGATGTCCTAATATTGTCGGTTTCATTGAACGATTG
CAACGGTGATGTTACAGGTGACCTATATAACGTTATTTATTCATTTGGAG
CCAAAAGAACATTTCCGAAAATAAATAATATCCACATCAAAGATGATCAG
ATATTTTCACCGAATTGTTACATCACCAGAAATTATATTGTAATACAAGG
ACCTTTTTCTATAAAGGCAACTTCAATAACAGACGGAACCGGTTCAACAG
ATGTTACAGTTTCTTTAGGAATTTTTCTTGATAGCAATTTCGTAACGGTC
TTACCAAATTTGAATCTGGCCTCTAAAGGGACAACGGTTTTTGTTAGGAT
AAGCTTTAATAATCCTCCGGTCAATCTTGTGTTGGTTCTTGTCGAATGCT
ACGTTACCGATGGCAACACAAAAGTGTATTTAATTCAAAATAGATGCCCA
GTATTATCTACTGTTCAAATTAATCCAATTAGCGATTCTGTTTCTTCTTT
TAACTTTGTAAGTTTTTCCATTTCTGGATCATCGAATCAAAACTTGGTCT
GTCAAACATCTAAATGTGGAAAAAACGAAATCGGTTGCATAACAAAATGT
TAAATCAATCAGCTTTTGAAACATTTGAAATATTTTCCTGTCAATATTCA
ACATTTATATCACTTTGTATTTGAAC

protein sequence of SMED30031736-orf-1

>SMED30031736-orf-1 ID=SMED30031736-orf-1|Name=SMED30031736-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=512bp
MNYFLPILFMLDILGVIGQEPGIRLIYFDPATKLYPGSNGVVILELNNGI
KATICLNSSSVNDAQVACRSMNYTSSQKTSSASSFAFISSVKTKLAKTYF
QNLQCNGDEDSLEKCPGYKFSNPVDFKCQNNNQDLSISCLYDYSFSKIKM
PSEKCPKATLQVDQYGFLQFNNNGNLIYFCGARNIFSTNEAQLFCKLLCA
ENSTSPRIIQGINMTSLQNIPIGGFNNLSCPANATSLDDCSNAFPFQSDQ
CTPSDNIGVACSVSSLVQDPLPIVVCENNTLKLLWNRTIHPTILPTDVDI
VYLNASCNNVIKSNLSDVLILSVSLNDCNGDVTGDLYNVIYSFGAKRTFP
KINNIHIKDDQIFSPNCYITRNYIVIQGPFSIKATSITDGTGSTDVTVSL
GIFLDSNFVTVLPNLNLASKGTTVFVRISFNNPPVNLVLVLVECYVTDGN
TKVYLIQNRCPVLSTVQINPISDSVSSFNFVSFSISGSSNQNLVCQTSKC
GKNEIGCITKC*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000016	pharynx
PLANA:0000020	protonephridia
PLANA:0000025	nervous system
PLANA:0000034	epidermis
PLANA:0000099	neuron
PLANA:0000418	head
PLANA:0002032	epidermal cell

Vocabulary: **INTERPRO**
Term	Definition
IPR036772	SRCR-like_dom_sf
IPR017448	SRCR-like_dom
IPR001507	ZP_dom
IPR001190	SRCR

Vocabulary: **cellular component**
Term	Definition
GO:0016020	membrane

Vocabulary: **molecular function**
Term	Definition
GO:0005044	scavenger receptor activity

Vocabulary: **biological process**
Term	Definition
GO:0006898	receptor-mediated endocytosis

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001507	Zona pellucida domain	SMART	SM00241	zp_4	coord: 205..440 e-value: 3.7E-4 score: -25.1
IPR001507	Zona pellucida domain	PROSITE	PS51034	ZP_2	coord: 205..441 score: 15.118
IPR036772	SRCR-like domain superfamily	GENE3D	G3DSA:3.10.250.10		coord: 88..197 e-value: 3.5E-7 score: 32.0
None	No IPR available	GENE3D	G3DSA:2.60.40.4100		coord: 323..441 e-value: 5.0E-9 score: 37.7
IPR001190	SRCR domain	PROSITE	PS50287	SRCR_2	coord: 78..192 score: 10.628
IPR001190	SRCR domain	PROSITE	PS50287	SRCR_2	coord: 29..70 score: 7.67

Main menu

SMED30031736

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 9

Owlery

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