SMED30031695

Overview
NameSMED30031695
Smed IDSMED30031695
Length (bp)1258
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30031695 (SMED30031695) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30031695 (SMED30031695) in cells (dots) of each of the 12 neoblast clusters.

 

back to top

 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30031695 (SMED30031695) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30031695 (SMED30031695) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top

 

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020



SMED30031695

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 6

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
protonephridiaSMED30031695h1SMcG0014468 dd_Smed_v4_18865_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30031695h1SMcG0014468 dd_Smed_v4_18865_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30031695h1SMcG0014468 dd_Smed_v4_18865_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
protonephridiaSMED30031695h1SMcG0014467 dd_Smed_v4_18865_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30031695h1SMcG0014467 dd_Smed_v4_18865_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30031695h1SMcG0014467 dd_Smed_v4_18865_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30031695 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.002326:37174..39102 +4733
v31.042011:382..1898 +4676
v31.003079:14860..16693 -4568
v31.002326:37079..38282 +1566
v31.002326:45927..47132 -1265
Homology
[Close]
BLAST of SMED30031695 vs. Planmine SMEST
Match: SMESG000009161.1 (SMESG000009161.1)

HSP 1 Score: 455.677 bits (1171), Expect = 1.182e-159
Identity = 236/270 (87.41%), Postives = 240/270 (88.89%), Query Frame = 3 
Query:  117 QSNTQLIFSKLIKSFNIIDMKEVQPKPISNSFKQNQLSSQTISKHTNQISSSTTVTPNHHDSSQYQNSTTKSES----------------------RNTSSDVDNSLQSNTQFSVSSLIKVFNNDDIKEVQLKPISNSFKQNQSTSVNINNISCDVDNTLQSNTQLSATKKTILSDSRPSFLQSPPAMISTKTTIKSSENSLTNPSTTRSTGDIIETSHDLQMAEKMVTEHSKKRKEEYSINYQLRPVQRLQNYKMYFLKFKHKSCCMIQ 860
            QS TQ   S LIK FNI+DMKEVQPKPISNSFK+NQLSSQTISKHTNQISSSTTVTPNHHDSSQYQNSTTKSES                       NTSSDVDNSLQSNTQFSVSSLIKVFNNDDIKEVQLKPI NSFKQNQSTSVNINNISCDVDNTLQSNTQLSATKKTILSDSRPSFLQSPPAMISTKTTIKSSENSLTNPSTTRSTGDIIETSHDLQMAEKMVTEHSKKRKEEYSINYQLRPVQ+LQNYKMYFLKFKHKSCC+IQ
Sbjct:  119 QSQTQFTISSLIKRFNIVDMKEVQPKPISNSFKKNQLSSQTISKHTNQISSSTTVTPNHHDSSQYQNSTTKSESCNIITHSSFERPVPPKRKSININNTSSDVDNSLQSNTQFSVSSLIKVFNNDDIKEVQLKPICNSFKQNQSTSVNINNISCDVDNTLQSNTQLSATKKTILSDSRPSFLQSPPAMISTKTTIKSSENSLTNPSTTRSTGDIIETSHDLQMAEKMVTEHSKKRKEEYSINYQLRPVQKLQNYKMYFLKFKHKSCCLIQ 388
[Close]
BLAST of SMED30031695 vs. Planmine SMEST
Match: SMESG000009116.1 (SMESG000009116.1)

HSP 1 Score: 457.603 bits (1176), Expect = 4.270e-159
Identity = 237/270 (87.78%), Postives = 240/270 (88.89%), Query Frame = 3 
Query:  117 QSNTQLIFSKLIKSFNIIDMKEVQPKPISNSFKQNQLSSQTISKHTNQISSSTTVTPNHHDSSQYQNSTTKSES----------------------RNTSSDVDNSLQSNTQFSVSSLIKVFNNDDIKEVQLKPISNSFKQNQSTSVNINNISCDVDNTLQSNTQLSATKKTILSDSRPSFLQSPPAMISTKTTIKSSENSLTNPSTTRSTGDIIETSHDLQMAEKMVTEHSKKRKEEYSINYQLRPVQRLQNYKMYFLKFKHKSCCMIQ 860
            QS TQ   S LIK FNI+DMKEVQPKPISNSFKQNQLSSQTISKHTNQISSSTTVTPNHHDSSQYQNSTTKSES                       NTSSDVDNSLQSNTQFSVSSLIKVFNNDDIKEVQLKPI NSFKQNQSTSVNINNISCDVDNTLQSNTQLSATKKTILSDSRPSFLQSPPAMISTKTTIKSSENSLTNPSTTRSTGDIIETSHDLQMAEKMVTEHSKKRKEEYSINYQLRPVQ+LQNYKMYFLKFKHKSCC+IQ
Sbjct:  207 QSQTQFTISSLIKRFNIVDMKEVQPKPISNSFKQNQLSSQTISKHTNQISSSTTVTPNHHDSSQYQNSTTKSESCNIITHSSFERPVPPKRKSININNTSSDVDNSLQSNTQFSVSSLIKVFNNDDIKEVQLKPICNSFKQNQSTSVNINNISCDVDNTLQSNTQLSATKKTILSDSRPSFLQSPPAMISTKTTIKSSENSLTNPSTTRSTGDIIETSHDLQMAEKMVTEHSKKRKEEYSINYQLRPVQKLQNYKMYFLKFKHKSCCLIQ 476

HSP 2 Score: 154.451 bits (389), Expect = 5.363e-42
Identity = 94/140 (67.14%), Postives = 102/140 (72.86%), Query Frame = 3 
Query:  159 FNIIDM-----KEVQPKPISNSFKQNQLSSQTISKHTNQISSSTTVTPNHHDSSQYQNSTTKSES----------------------RNTSSDVDNSLQSNTQFSVSSLIKVFNNDDIKEVQLKPISNSFKQNQSTSVNI 497
            F+I+D+     KE Q KPISNSFKQNQLSSQTISKHTNQISSSTTVTPNHHDSSQYQNSTTKSES                       N+SSDVDNSLQS TQF++SSLIK FN  D+KEVQ KPISNSFKQNQ +S  I
Sbjct:    2 FDIVDINNDYIKEEQSKPISNSFKQNQLSSQTISKHTNQISSSTTVTPNHHDSSQYQNSTTKSESCNIITHSSFERPVPQKRKSININNSSSDVDNSLQSQTQFTISSLIKRFNIVDMKEVQPKPISNSFKQNQLSSQTI 141
[Close]
BLAST of SMED30031695 vs. Planmine SMEST
Match: SMESG000008713.1 (SMESG000008713.1)

HSP 1 Score: 381.333 bits (978), Expect = 5.373e-127
Identity = 237/419 (56.56%), Postives = 266/419 (63.48%), Query Frame = 3 
Query:  117 QSNTQLIFSKLIKSFNIIDMKEVQPKPISNSFKQNQLSSQTISKHTNQISSSTTVTPNHHDSSQYQNSTTKSES----------------------RNTSSDVDNSLQSNTQFSVSSLIKVFNNDDIKEVQLKPISNSFK--------------------------------QNQST----------------------SVNINNISCDVDNTLQSNTQLSATKKTILSDSRPSFLQSPPAMISTKTTIKSSENSLTNPSTTRSTGDIIETSHDLQMAEKMVTEHSKKRKEEYSINYQLRPVQRLQNYKMYFLK--FKHKSCCMIQ*S*ENXXXXXXXXXXXXTMWM---FRKMNHH-------------ARFYNALQEITF*DN*SW*ITLNI*RFKVY*NDIVSLIWRIKRARFARE 1091
            QSNTQ   S LIK FNI+DMKEVQPKPISNSFKQNQLSSQTISKHTNQISSSTTVTPNHHDSSQYQNSTTKSES                       N +SDVDNSLQSNTQF++SSLIK FN  D+KEVQ KPISNSFK                                QN +T                      S+NINN + DVDN+LQSNT+ SA KKTILSDSRPSFLQSPPAMISTKTTIKSS++SLTNPSTTRSTGDIIE SHD +MA+KM+T   +K+KEEYSINYQLRPVQ L+NYKMYFLK  F+ K    ++ S  +    I  LS      +   F K+N H              ++Y+ALQEI F DN SW IT+ I  FKV  NDIVS I RI+ AR A E
Sbjct:  221 QSNTQFTISSLIKRFNIVDMKEVQPKPISNSFKQNQLSSQTISKHTNQISSSTTVTPNHHDSSQYQNSTTKSESCNIITHSSFERPVPKQRKSININNKASDVDNSLQSNTQFTISSLIKRFNIVDMKEVQPKPISNSFKQNQLSSQTISKHTNQISSSTTVTPNHHDSSQYQNSTTKSESCNIITHSSFERPVPKQRKSININNKASDVDNSLQSNTKFSANKKTILSDSRPSFLQSPPAMISTKTTIKSSKHSLTNPSTTRSTGDIIEISHDFEMADKMITGKHEKKKEEYSINYQLRPVQMLKNYKMYFLKNQFEIKLSDPVKLSKTSYPHLIATLSKNDMDVLKNEFIKINSHIQVTTTSFFNDDQTKYYDALQEIIFRDNESWYITVTIQGFKVDQNDIVSPICRIESARLALE 639

HSP 2 Score: 189.119 bits (479), Expect = 1.292e-53
Identity = 122/221 (55.20%), Postives = 131/221 (59.28%), Query Frame = 3 
Query:  117 QSNTQLIFSKLIKSFNIIDMKEVQPKPISNSFKQNQLSSQTISKHTNQISSSTTVTPNHHDSSQYQNSTTKSES----------------------RNTSSDVDNSLQSNTQFSVSSLIKVFNNDDIKEVQLKPISNSFKQNQ---------------STSV---------------------------------------NINNISCDVDNTLQSNTQLS 551
            QSNTQ   S LIK FNI+DMKEVQPKPISNSFKQNQLSSQTISKHTNQISSSTTVTPNHHDSSQYQNSTTKSES                       N +SDVDNSLQSNTQF++SSLIK FN  D+KEVQ KPISNSFKQNQ               ST+V                                       NINN + DVDN+LQSNTQ +
Sbjct:  114 QSNTQFTISSLIKRFNIVDMKEVQPKPISNSFKQNQLSSQTISKHTNQISSSTTVTPNHHDSSQYQNSTTKSESCNIITHSSFERPVPKQRKSININNKASDVDNSLQSNTQFTISSLIKRFNIVDMKEVQPKPISNSFKQNQLSSQTISKHTNQISSSTTVTPNHHDSSQYQNSTTKSESCNIITHSSFERPVPKQRKSININNKASDVDNSLQSNTQFT 334

HSP 3 Score: 180.644 bits (457), Expect = 1.869e-50
Identity = 117/213 (54.93%), Postives = 126/213 (59.15%), Query Frame = 3 
Query:  141 SKLIKSFNIIDMKEVQPKPISNSFKQNQLSSQTISKHTNQISSSTTVTPNHHDSSQYQNSTTKSES----------------------RNTSSDVDNSLQSNTQFSVSSLIKVFNNDDIKEVQLKPISNSFKQNQ---------------STSV---------------------------------------NINNISCDVDNTLQSNTQLS 551
            S LIK FNI+DMKEVQPKPISNSFKQNQLSSQTISKHTNQISSSTTVTPNHHDSSQYQNSTTKSES                       N +SDVDNSLQSNTQF++SSLIK FN  D+KEVQ KPISNSFKQNQ               ST+V                                       NINN + DVDN+LQSNTQ +
Sbjct:   15 SSLIKRFNIVDMKEVQPKPISNSFKQNQLSSQTISKHTNQISSSTTVTPNHHDSSQYQNSTTKSESCNIITHSSFERPVPKQRKSININNKASDVDNSLQSNTQFTISSLIKRFNIVDMKEVQPKPISNSFKQNQLSSQTISKHTNQISSSTTVTPNHHDSSQYQNSTTKSESCNIITHSSFERPVPKQRKSININNKASDVDNSLQSNTQFT 227

HSP 4 Score: 48.521 bits (114), Expect = 7.780e-6
Identity = 41/108 (37.96%), Postives = 47/108 (43.52%), Query Frame = 3 
Query:  390 SVSSLIKVFNNDDIKEVQLKPISNSFKQNQ---------------STSV---------------------------------------NINNISCDVDNTLQSNTQLS 551
            +VSSLIK FN  D+KEVQ KPISNSFKQNQ               ST+V                                       NINN + DVDN+LQSNTQ +
Sbjct:   13 TVSSLIKRFNIVDMKEVQPKPISNSFKQNQLSSQTISKHTNQISSSTTVTPNHHDSSQYQNSTTKSESCNIITHSSFERPVPKQRKSININNKASDVDNSLQSNTQFT 120
[Close]
BLAST of SMED30031695 vs. Planmine SMEST
Match: SMESG000050885.1 (SMESG000050885.1)

HSP 1 Score: 132.109 bits (331), Expect = 1.036e-35
Identity = 91/166 (54.82%), Postives = 106/166 (63.86%), Query Frame = 3 
Query:  141 SKLIKSFNIIDMKEVQPKPISNSFKQNQLSSQTISKHTNQISSSTTVTPNHHDSSQYQNSTTKSESRNTSSDVDNSLQSNTQFSVSSLIKVFNNDDIKEVQLKPISNSFKQNQSTSVNINNISCDVDNTLQSNTQLSATKKTILSDSRPSFLQSPPAMISTKTTIK 638
            S LIK FN +D+KE+QPK + NSFKQNQ +S TISKHTNQISSSTT+T N+H SSQYQNSTTKSES   SS++ +S                           P   S   N+  +   NNIS D D   QSN QLSATKKTILSDSRPS  Q+PPAMIS+K TI+
Sbjct:   15 SSLIKKFNNVDIKEIQPKTVCNSFKQNQFTSHTISKHTNQISSSTTITSNYHHSSQYQNSTTKSES---SSNIIHS------------------------SFGP---SLPHNRKINNI-NNISSDAD---QSNKQLSATKKTILSDSRPSISQNPPAMISSKRTIR 146

HSP 2 Score: 47.3654 bits (111), Expect = 8.328e-6
Identity = 25/35 (71.43%), Postives = 27/35 (77.14%), Query Frame = 3 
Query:  393 VSSLIKVFNNDDIKEVQLKPISNSFKQNQSTSVNI 497
            VSSLIK FNN DIKE+Q K + NSFKQNQ TS  I
Sbjct:   14 VSSLIKKFNNVDIKEIQPKTVCNSFKQNQFTSHTI 48
[Close]
BLAST of SMED30031695 vs. Planmine SMEST
Match: SMESG000007863.1 (SMESG000007863.1)

HSP 1 Score: 41.2022 bits (95), Expect = 1.068e-8
Identity = 25/51 (49.02%), Postives = 33/51 (64.71%), Query Frame = 3 
Query:  942 HARFYNALQEITF*DN*SW*ITLNI*RFKVY*NDIVSLIWRIKRARFAREF 1094
             ARFY+A Q+I F +N +  +T+ I RFKV  N+    IWR+KRAR A  F
Sbjct:   61 QARFYDAFQKIMFKENENSYVTIKIQRFKVDQNN----IWRLKRARLALGF 107

HSP 2 Score: 37.3502 bits (85), Expect = 1.068e-8
Identity = 19/31 (61.29%), Postives = 21/31 (67.74%), Query Frame = 2 
Query:  839 QIMLYDPVKLRKLPYPHLMTILSNNDVDV*K 931
            +I L +PVKL K PY HLM  LS  DVDV K
Sbjct:    9 EIKLTNPVKLCKTPYRHLMATLSTEDVDVLK 39
The following BLAST results are available for this feature:
BLAST of SMED30031695 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30031695 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30031695 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30031695 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30031695 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30031695 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30031695 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30031695 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30031695 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30031695 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30031695 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30031695 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30031695 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30031695 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000009161.11.182e-15987.41SMESG000009161.1[more]
SMESG000009116.14.270e-15987.78SMESG000009116.1[more]
SMESG000008713.15.373e-12756.56SMESG000008713.1[more]
SMESG000050885.11.036e-3554.82SMESG000050885.1[more]
SMESG000007863.11.068e-849.02SMESG000007863.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30031695 ID=SMED30031695|Name=SMED30031695|organism=Schmidtea mediterranea sexual|type=transcript|length=1258bp
AATTAGAAATTTCAAAAGATGAAGGTTCGTCGAGTCCTTTGATGAAATCA
GACACAAACATTGCAATAACAAATCAGGATCACGAAGAGAGACTTCGTAA
TTCCAGATACCAATAGCAATCAAATACACAATTAATCTTTTCAAAGCTCA
TCAAAAGCTTCAACATTATCGATATGAAGGAAGTGCAACCAAAACCAATT
TCTAATTCATTCAAACAAAATCAGTTATCTTCTCAAACGATTTCAAAGCA
CACAAATCAGATTTCCTCCTCAACAACTGTTACACCAAATCATCACGACA
GCTCTCAATATCAAAATTCAACAACAAAATCTGAATCAAGAAACACATCT
AGTGATGTTGATAATTCTCTTCAATCTAATACACAATTCAGCGTTTCAAG
TCTCATCAAAGTGTTCAACAATGACGACATCAAGGAAGTTCAACTAAAAC
CAATTTCTAATTCATTTAAACAAAATCAGTCAACTTCAGTTAATATAAAC
AACATATCTTGTGACGTTGATAATACCCTTCAATCTAATACACAACTTTC
TGCTACCAAGAAAACCATTTTATCTGACAGTCGACCATCATTTCTCCAGA
GTCCTCCTGCGATGATCTCCACAAAAACAACTATTAAAAGTTCCGAAAAT
TCATTAACAAATCCCTCTACAACCAGATCGACTGGAGATATCATTGAAAC
TAGTCATGATTTACAAATGGCAGAGAAAATGGTTACTGAACATAGTAAAA
AGAGAAAGGAAGAATATTCAATTAATTATCAATTGCGACCAGTACAAAGG
TTACAAAATTATAAGATGTATTTCCTAAAATTCAAACACAAATCATGTTG
TATGATCCAGTAAAGCTAAGAAAATTGCCTTATCCACATCTGATGACTAT
CTTGTCTAATAACGATGTGGATGTTTAGAAAAATGAACCACCATGCAAGA
TTTTATAATGCTTTACAAGAAATAACTTTTTAAGATAATTAAAGCTGGTA
AATCACTCTAAATATTTAGCGATTCAAAGTGTATTGAAATGATATAGTAT
CTCTAATATGGCGAATAAAACGCGCAAGATTTGCTCGTGAATTTGATGTG
TATTATCTATGTATTACTAACAAATGTATTAACTGATTTTTGTCGTATAT
GTGAATAAGAAAGTAAGTGTAGTAAATATGCATATTTAATTAATACCGTT
ACAATACCTGTGCATTATGATTAAAGCAAATGCTTTAATAAATGAATAAT
GACGACAT
back to top

protein sequence of SMED30031695-orf-1

>SMED30031695-orf-1 ID=SMED30031695-orf-1|Name=SMED30031695-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=230bp
MKEVQPKPISNSFKQNQLSSQTISKHTNQISSSTTVTPNHHDSSQYQNST
TKSESRNTSSDVDNSLQSNTQFSVSSLIKVFNNDDIKEVQLKPISNSFKQ
NQSTSVNINNISCDVDNTLQSNTQLSATKKTILSDSRPSFLQSPPAMIST
KTTIKSSENSLTNPSTTRSTGDIIETSHDLQMAEKMVTEHSKKRKEEYSI
NYQLRPVQRLQNYKMYFLKFKHKSCCMIQ*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000020protonephridia
PLANA:0003116parenchymal cell
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 8..62
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..62