SMED30031678

Overview
NameSMED30031678
Smed IDSMED30031678
Length (bp)1866
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30031678 (SMED30031678) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30031678 (SMED30031678) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30031678 (SMED30031678) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30031678 (SMED30031678) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30031678

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30031678SMESG000065438.1 SmedASXL_011377SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30031678SMESG000065438.1 SmedASXL_011377SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30031678 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.006211:32851..34849 +9228
v31.015771:11568..13566 +9126
Homology
[Close]
BLAST of SMED30031678 vs. Planmine SMEST
Match: SMESG000065438.1 (SMESG000065438.1)

HSP 1 Score: 1096.65 bits (2835), Expect = 0.000e+0
Identity = 550/551 (99.82%), Postives = 550/551 (99.82%), Query Frame = 2 
Query:   53 MQEDLLYLNEKFGNLVCSSEILNKDMSALCYWCENRGIMKCKNCERSFCKFCVKNGHLADEIKRVCFVCGCYELTEVVKNDTNCCLRDREMCDMLKRYEELCSNDKLANSIHDLLINIDALGNENFPRLFEVIKLNIFSMLHDIQKVETMVNQAVNDNRQEDIDRILMPLLKVVMKHHVFKRLGRPQHCFGDEMPAIDSSEQMNNRMELSVKQSDETINDDNERIQRSPDRLAEEEKLTSKFEILDSVDDENCRNLSIYKQPDNSLSLVSYQLDQLNEISFHLDQPDVVNSPTXXXXXXXXXXXXXXXXXVRLRSETNPPPSFNALQSDLGKAMATALGDQPSSVSPLPICRVSSIKEEKACENSSSVSSIDSATRQSLPELIGLRKFAPVTGRNKNSHLVSPAPIKYERPFVLKADMDKAEELLDELTQPPPATNKTWSWERTSPLVAQKYLIPAAATSGGAVSRNCRHSNGNLGKILNKTVIIPKSMLDSSIRGRIAPIESAALTPPPLQMVPVKRSSSPSLLADSDEPKKKRGRPRKYFGFECYTPVP 1705
            MQEDLLYLNEKFGNLVCSSEILNKDMSALCYWCENRGIMKCKNCERSFCKFCVKNGHLADEIKRVCFVCGCYELTEVVKNDTNCCLRDREMCDMLKRYEELCSNDKLANSIHDLLINIDALGNENFPRLFEVIKLNIFSMLHDIQKVETMVNQAVNDNRQEDIDRILMPLLKVVMKHHVFKRLGRPQHCFGDEMPAIDSSEQMNNRMELSVKQSDETINDDNERIQRSPDRLAEEEKLTSKFEILDSVDDENCRNLSIYKQPDNSLSLVSYQLDQLNEISFHLDQPDVVNSPTKERRKRSKRLSEIERRSVRLRSETNPPPSFNALQSDLGKAMATALGDQPSSVSPLPICRVSSIKEEKACENSSSVSSIDSATRQSLPELIGLRKFAPVTGRNKNSHLVSPAPIKYERPFVLKADMDKAEELLDELTQPPPATNKTWSWERTSPLVAQKYLIPAAATSGGAVSRNCRHSNGNLGKILNKTVIIPKSMLDSSIRGRIAPIESAALTPPPLQMVPVKRSSSPSLL DSDEPKKKRGRPRKYFGFECYTPVP
Sbjct:    1 MQEDLLYLNEKFGNLVCSSEILNKDMSALCYWCENRGIMKCKNCERSFCKFCVKNGHLADEIKRVCFVCGCYELTEVVKNDTNCCLRDREMCDMLKRYEELCSNDKLANSIHDLLINIDALGNENFPRLFEVIKLNIFSMLHDIQKVETMVNQAVNDNRQEDIDRILMPLLKVVMKHHVFKRLGRPQHCFGDEMPAIDSSEQMNNRMELSVKQSDETINDDNERIQRSPDRLAEEEKLTSKFEILDSVDDENCRNLSIYKQPDNSLSLVSYQLDQLNEISFHLDQPDVVNSPTKERRKRSKRLSEIERRSVRLRSETNPPPSFNALQSDLGKAMATALGDQPSSVSPLPICRVSSIKEEKACENSSSVSSIDSATRQSLPELIGLRKFAPVTGRNKNSHLVSPAPIKYERPFVLKADMDKAEELLDELTQPPPATNKTWSWERTSPLVAQKYLIPAAATSGGAVSRNCRHSNGNLGKILNKTVIIPKSMLDSSIRGRIAPIESAALTPPPLQMVPVKRSSSPSLLTDSDEPKKKRGRPRKYFGFECYTPVP 551
[Close]
BLAST of SMED30031678 vs. Planmine SMEST
Match: SMESG000065438.1 (SMESG000065438.1)

HSP 1 Score: 1045.8 bits (2703), Expect = 0.000e+0
Identity = 525/526 (99.81%), Postives = 525/526 (99.81%), Query Frame = 2 
Query:  128 MSALCYWCENRGIMKCKNCERSFCKFCVKNGHLADEIKRVCFVCGCYELTEVVKNDTNCCLRDREMCDMLKRYEELCSNDKLANSIHDLLINIDALGNENFPRLFEVIKLNIFSMLHDIQKVETMVNQAVNDNRQEDIDRILMPLLKVVMKHHVFKRLGRPQHCFGDEMPAIDSSEQMNNRMELSVKQSDETINDDNERIQRSPDRLAEEEKLTSKFEILDSVDDENCRNLSIYKQPDNSLSLVSYQLDQLNEISFHLDQPDVVNSPTXXXXXXXXXXXXXXXXXVRLRSETNPPPSFNALQSDLGKAMATALGDQPSSVSPLPICRVSSIKEEKACENSSSVSSIDSATRQSLPELIGLRKFAPVTGRNKNSHLVSPAPIKYERPFVLKADMDKAEELLDELTQPPPATNKTWSWERTSPLVAQKYLIPAAATSGGAVSRNCRHSNGNLGKILNKTVIIPKSMLDSSIRGRIAPIESAALTPPPLQMVPVKRSSSPSLLADSDEPKKKRGRPRKYFGFECYTPVP 1705
            MSALCYWCENRGIMKCKNCERSFCKFCVKNGHLADEIKRVCFVCGCYELTEVVKNDTNCCLRDREMCDMLKRYEELCSNDKLANSIHDLLINIDALGNENFPRLFEVIKLNIFSMLHDIQKVETMVNQAVNDNRQEDIDRILMPLLKVVMKHHVFKRLGRPQHCFGDEMPAIDSSEQMNNRMELSVKQSDETINDDNERIQRSPDRLAEEEKLTSKFEILDSVDDENCRNLSIYKQPDNSLSLVSYQLDQLNEISFHLDQPDVVNSPTKERRKRSKRLSEIERRSVRLRSETNPPPSFNALQSDLGKAMATALGDQPSSVSPLPICRVSSIKEEKACENSSSVSSIDSATRQSLPELIGLRKFAPVTGRNKNSHLVSPAPIKYERPFVLKADMDKAEELLDELTQPPPATNKTWSWERTSPLVAQKYLIPAAATSGGAVSRNCRHSNGNLGKILNKTVIIPKSMLDSSIRGRIAPIESAALTPPPLQMVPVKRSSSPSLL DSDEPKKKRGRPRKYFGFECYTPVP
Sbjct:    1 MSALCYWCENRGIMKCKNCERSFCKFCVKNGHLADEIKRVCFVCGCYELTEVVKNDTNCCLRDREMCDMLKRYEELCSNDKLANSIHDLLINIDALGNENFPRLFEVIKLNIFSMLHDIQKVETMVNQAVNDNRQEDIDRILMPLLKVVMKHHVFKRLGRPQHCFGDEMPAIDSSEQMNNRMELSVKQSDETINDDNERIQRSPDRLAEEEKLTSKFEILDSVDDENCRNLSIYKQPDNSLSLVSYQLDQLNEISFHLDQPDVVNSPTKERRKRSKRLSEIERRSVRLRSETNPPPSFNALQSDLGKAMATALGDQPSSVSPLPICRVSSIKEEKACENSSSVSSIDSATRQSLPELIGLRKFAPVTGRNKNSHLVSPAPIKYERPFVLKADMDKAEELLDELTQPPPATNKTWSWERTSPLVAQKYLIPAAATSGGAVSRNCRHSNGNLGKILNKTVIIPKSMLDSSIRGRIAPIESAALTPPPLQMVPVKRSSSPSLLTDSDEPKKKRGRPRKYFGFECYTPVP 526
[Close]
BLAST of SMED30031678 vs. Planmine SMEST
Match: SMESG000065438.1 (SMESG000065438.1)

HSP 1 Score: 1016.53 bits (2627), Expect = 0.000e+0
Identity = 512/513 (99.81%), Postives = 512/513 (99.81%), Query Frame = 2 
Query:  167 MKCKNCERSFCKFCVKNGHLADEIKRVCFVCGCYELTEVVKNDTNCCLRDREMCDMLKRYEELCSNDKLANSIHDLLINIDALGNENFPRLFEVIKLNIFSMLHDIQKVETMVNQAVNDNRQEDIDRILMPLLKVVMKHHVFKRLGRPQHCFGDEMPAIDSSEQMNNRMELSVKQSDETINDDNERIQRSPDRLAEEEKLTSKFEILDSVDDENCRNLSIYKQPDNSLSLVSYQLDQLNEISFHLDQPDVVNSPTXXXXXXXXXXXXXXXXXVRLRSETNPPPSFNALQSDLGKAMATALGDQPSSVSPLPICRVSSIKEEKACENSSSVSSIDSATRQSLPELIGLRKFAPVTGRNKNSHLVSPAPIKYERPFVLKADMDKAEELLDELTQPPPATNKTWSWERTSPLVAQKYLIPAAATSGGAVSRNCRHSNGNLGKILNKTVIIPKSMLDSSIRGRIAPIESAALTPPPLQMVPVKRSSSPSLLADSDEPKKKRGRPRKYFGFECYTPVP 1705
            MKCKNCERSFCKFCVKNGHLADEIKRVCFVCGCYELTEVVKNDTNCCLRDREMCDMLKRYEELCSNDKLANSIHDLLINIDALGNENFPRLFEVIKLNIFSMLHDIQKVETMVNQAVNDNRQEDIDRILMPLLKVVMKHHVFKRLGRPQHCFGDEMPAIDSSEQMNNRMELSVKQSDETINDDNERIQRSPDRLAEEEKLTSKFEILDSVDDENCRNLSIYKQPDNSLSLVSYQLDQLNEISFHLDQPDVVNSPTKERRKRSKRLSEIERRSVRLRSETNPPPSFNALQSDLGKAMATALGDQPSSVSPLPICRVSSIKEEKACENSSSVSSIDSATRQSLPELIGLRKFAPVTGRNKNSHLVSPAPIKYERPFVLKADMDKAEELLDELTQPPPATNKTWSWERTSPLVAQKYLIPAAATSGGAVSRNCRHSNGNLGKILNKTVIIPKSMLDSSIRGRIAPIESAALTPPPLQMVPVKRSSSPSLL DSDEPKKKRGRPRKYFGFECYTPVP
Sbjct:    1 MKCKNCERSFCKFCVKNGHLADEIKRVCFVCGCYELTEVVKNDTNCCLRDREMCDMLKRYEELCSNDKLANSIHDLLINIDALGNENFPRLFEVIKLNIFSMLHDIQKVETMVNQAVNDNRQEDIDRILMPLLKVVMKHHVFKRLGRPQHCFGDEMPAIDSSEQMNNRMELSVKQSDETINDDNERIQRSPDRLAEEEKLTSKFEILDSVDDENCRNLSIYKQPDNSLSLVSYQLDQLNEISFHLDQPDVVNSPTKERRKRSKRLSEIERRSVRLRSETNPPPSFNALQSDLGKAMATALGDQPSSVSPLPICRVSSIKEEKACENSSSVSSIDSATRQSLPELIGLRKFAPVTGRNKNSHLVSPAPIKYERPFVLKADMDKAEELLDELTQPPPATNKTWSWERTSPLVAQKYLIPAAATSGGAVSRNCRHSNGNLGKILNKTVIIPKSMLDSSIRGRIAPIESAALTPPPLQMVPVKRSSSPSLLTDSDEPKKKRGRPRKYFGFECYTPVP 513
The following BLAST results are available for this feature:
BLAST of SMED30031678 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031678 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031678 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031678 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031678 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031678 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031678 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031678 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031678 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031678 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031678 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031678 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031678 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031678 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3
Match NameE-valueIdentityDescription
SMESG000065438.10.000e+099.82SMESG000065438.1[more]
SMESG000065438.10.000e+099.81SMESG000065438.1[more]
SMESG000065438.10.000e+099.81SMESG000065438.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30031678 ID=SMED30031678|Name=SMED30031678|organism=Schmidtea mediterranea sexual|type=transcript|length=1866bp
ATGTTTATATTGGATAGAATTTTTATAAATATTTTATAAAACACTGTTAA
ATATGCAGGAAGATTTATTGTATTTAAATGAAAAATTTGGCAATTTAGTT
TGTTCTTCAGAGATACTCAACAAAGATATGTCAGCATTATGTTATTGGTG
CGAAAACAGAGGAATAATGAAATGCAAGAATTGTGAAAGAAGTTTCTGTA
AATTTTGTGTAAAAAATGGCCATTTGGCCGATGAAATTAAACGTGTTTGC
TTCGTTTGTGGATGCTATGAGTTGACAGAAGTTGTAAAAAATGACACAAA
TTGTTGCCTGAGAGATCGGGAAATGTGTGATATGCTGAAAAGATACGAGG
AATTATGTAGCAATGACAAATTGGCAAATTCAATTCATGATTTGTTGATA
AATATTGACGCGTTAGGCAACGAAAACTTTCCGAGATTGTTTGAGGTTAT
AAAATTGAACATTTTCTCAATGTTGCACGATATCCAGAAAGTCGAAACAA
TGGTTAATCAAGCGGTTAATGACAACCGCCAAGAAGATATCGACAGAATT
TTGATGCCACTATTGAAAGTAGTTATGAAGCATCACGTGTTTAAGAGATT
AGGTCGACCGCAACATTGTTTCGGTGATGAAATGCCAGCAATCGACTCCT
CAGAACAGATGAATAATCGAATGGAATTATCTGTCAAGCAATCCGATGAA
ACCATTAACGATGATAACGAGAGAATACAGCGATCTCCAGACCGATTGGC
GGAAGAAGAAAAATTGACATCAAAATTCGAAATCCTCGATTCAGTCGACG
ATGAAAATTGCCGAAATTTATCGATTTACAAACAACCGGATAATTCTTTG
TCGCTGGTTTCCTATCAGCTGGATCAGCTGAACGAAATATCTTTTCATCT
CGATCAGCCGGATGTTGTCAACAGCCCAACGAAAGAGAGGAGAAAACGCT
CGAAGCGGCTTTCAGAAATTGAGCGGAGGAGCGTCAGATTGAGATCAGAA
ACGAATCCTCCACCGTCGTTCAATGCGCTGCAATCCGACCTGGGTAAGGC
CATGGCAACGGCATTGGGGGACCAACCGTCCTCGGTATCGCCGTTGCCGA
TTTGTCGAGTCTCATCAATCAAGGAGGAAAAAGCGTGCGAGAACTCATCA
TCGGTCTCATCGATTGACAGCGCAACCAGACAATCGCTACCAGAGTTGAT
CGGGTTGCGGAAATTCGCTCCCGTAACCGGGCGTAACAAGAACTCGCATC
TCGTCAGCCCTGCTCCAATCAAATACGAGCGGCCATTCGTATTGAAGGCC
GACATGGACAAAGCAGAGGAACTGCTGGACGAGCTGACACAGCCGCCTCC
TGCCACCAATAAGACGTGGTCATGGGAACGGACGTCGCCTCTAGTCGCAC
AGAAATACCTCATCCCAGCGGCTGCTACCAGCGGGGGGGCTGTCAGCAGG
AACTGCCGGCATTCCAATGGAAATCTCGGAAAGATCCTCAACAAAACCGT
CATCATACCGAAATCAATGCTCGACTCATCAATTCGTGGCCGCATAGCGC
CGATCGAATCGGCTGCCCTCACTCCGCCCCCTCTCCAGATGGTTCCGGTC
AAGCGCTCTTCATCACCGAGCTTGCTCGCCGATTCAGATGAACCGAAAAA
GAAACGCGGCCGGCCAAGAAAATATTTCGGATTCGAATGTTACACGCCAG
TGCCGAGCACGTCTAATGCAGACTCGCGTGACACTGACCGCAGAAATTCC
TCGGATTTCTCCGATCTCAAGTGAACCGCCGGATCGCGCTGATAATTGAT
TATTTTTCCATCTCGTTTGTACAGTCTAGATTAGTTTTGTAATAAATTAT
TCAATTTTGACTAAAA
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protein sequence of SMED30031678-orf-1

>SMED30031678-orf-1 ID=SMED30031678-orf-1|Name=SMED30031678-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=574bp
MQEDLLYLNEKFGNLVCSSEILNKDMSALCYWCENRGIMKCKNCERSFCK
FCVKNGHLADEIKRVCFVCGCYELTEVVKNDTNCCLRDREMCDMLKRYEE
LCSNDKLANSIHDLLINIDALGNENFPRLFEVIKLNIFSMLHDIQKVETM
VNQAVNDNRQEDIDRILMPLLKVVMKHHVFKRLGRPQHCFGDEMPAIDSS
EQMNNRMELSVKQSDETINDDNERIQRSPDRLAEEEKLTSKFEILDSVDD
ENCRNLSIYKQPDNSLSLVSYQLDQLNEISFHLDQPDVVNSPTKERRKRS
KRLSEIERRSVRLRSETNPPPSFNALQSDLGKAMATALGDQPSSVSPLPI
CRVSSIKEEKACENSSSVSSIDSATRQSLPELIGLRKFAPVTGRNKNSHL
VSPAPIKYERPFVLKADMDKAEELLDELTQPPPATNKTWSWERTSPLVAQ
KYLIPAAATSGGAVSRNCRHSNGNLGKILNKTVIIPKSMLDSSIRGRIAP
IESAALTPPPLQMVPVKRSSSPSLLADSDEPKKKRGRPRKYFGFECYTPV
PSTSNADSRDTDRRNSSDFSDLK*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002109X1 cell
PLANA:0002111X2 cell
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 557..573
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 510..573