SMED30031646
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30031646 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 16
Alignments
SMED30031646 aligns in the following genomic locations:
Homology
BLAST of SMED30031646 vs. Ensembl Human
Match: RPL36 (ribosomal protein L36 [Source:HGNC Symbol;Acc:HGNC:13631]) HSP 1 Score: 103.219 bits (256), Expect = 3.556e-29 Identity = 51/88 (57.95%), Postives = 65/88 (73.86%), Query Frame = -3 Query: 60 IAVGLNKGHAVTKLAKKVKPSHGKGKQSSSAKFCRDLIKEIVGLAPYEKRIIELLKIQKDKRALKFAKRRVGGHSRAKRVRENMSKVI 323 +AVGLNKGH VTK K + S +G+ + KF RD+I+E+ G APYE+R +ELLK+ KDKRALKF K+RVG H RAKR RE +S V+ Sbjct: 7 MAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL 94
BLAST of SMED30031646 vs. Ensembl Human
Match: RPL36 (ribosomal protein L36 [Source:HGNC Symbol;Acc:HGNC:13631]) HSP 1 Score: 103.219 bits (256), Expect = 3.556e-29 Identity = 51/88 (57.95%), Postives = 65/88 (73.86%), Query Frame = -3 Query: 60 IAVGLNKGHAVTKLAKKVKPSHGKGKQSSSAKFCRDLIKEIVGLAPYEKRIIELLKIQKDKRALKFAKRRVGGHSRAKRVRENMSKVI 323 +AVGLNKGH VTK K + S +G+ + KF RD+I+E+ G APYE+R +ELLK+ KDKRALKF K+RVG H RAKR RE +S V+ Sbjct: 7 MAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL 94
BLAST of SMED30031646 vs. Ensembl Human
Match: RPL36 (ribosomal protein L36 [Source:HGNC Symbol;Acc:HGNC:13631]) HSP 1 Score: 103.219 bits (256), Expect = 3.556e-29 Identity = 51/88 (57.95%), Postives = 65/88 (73.86%), Query Frame = -3 Query: 60 IAVGLNKGHAVTKLAKKVKPSHGKGKQSSSAKFCRDLIKEIVGLAPYEKRIIELLKIQKDKRALKFAKRRVGGHSRAKRVRENMSKVI 323 +AVGLNKGH VTK K + S +G+ + KF RD+I+E+ G APYE+R +ELLK+ KDKRALKF K+RVG H RAKR RE +S V+ Sbjct: 7 MAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL 94
BLAST of SMED30031646 vs. Ensembl Human
Match: RPL36 (ribosomal protein L36 [Source:HGNC Symbol;Acc:HGNC:13631]) HSP 1 Score: 103.219 bits (256), Expect = 3.556e-29 Identity = 51/88 (57.95%), Postives = 65/88 (73.86%), Query Frame = -3 Query: 60 IAVGLNKGHAVTKLAKKVKPSHGKGKQSSSAKFCRDLIKEIVGLAPYEKRIIELLKIQKDKRALKFAKRRVGGHSRAKRVRENMSKVI 323 +AVGLNKGH VTK K + S +G+ + KF RD+I+E+ G APYE+R +ELLK+ KDKRALKF K+RVG H RAKR RE +S V+ Sbjct: 7 MAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL 94
BLAST of SMED30031646 vs. Ensembl Human
Match: RPL36 (ribosomal protein L36 [Source:HGNC Symbol;Acc:HGNC:13631]) HSP 1 Score: 90.5077 bits (223), Expect = 2.299e-24 Identity = 44/78 (56.41%), Postives = 57/78 (73.08%), Query Frame = -3 Query: 90 IAVGLNKGHAVTKLAKKVKPSHGKGKQSSSAKFCRDLIKEIVGLAPYEKRIIELLKIQKDKRALKFAKRRVGGHSRAK 323 +AVGLNKGH VTK K + S +G+ + KF RD+I+E+ G APYE+R +ELLK+ KDKRALKF K+RVGG R + Sbjct: 7 MAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGGRCRPR 84
BLAST of SMED30031646 vs. Ensembl Celegans
Match: rpl-36 (60S ribosomal protein L36 [Source:UniProtKB/Swiss-Prot;Acc:P49181]) HSP 1 Score: 102.449 bits (254), Expect = 2.740e-29 Identity = 50/91 (54.95%), Postives = 65/91 (71.43%), Query Frame = -3 Query: 60 MSGIAVGLNKGHAVTKLAKKVKPSHGKGKQSSSAKFCRDLIKEIVGLAPYEKRIIELLKIQKDKRALKFAKRRVGGHSRAKRVRENMSKVI 332 + G+AVGLNKGHA T+L K + + KG S K R+L++EI G APYE+R++E+L+I KDKRALKF KRR+G H RAK RE + VI Sbjct: 6 IEGLAVGLNKGHAATQLPVKQRQNRHKGVASKKTKIVRELVREITGFAPYERRVLEMLRISKDKRALKFLKRRIGTHRRAKGKREELQNVI 96
BLAST of SMED30031646 vs. Ensembl Celegans
Match: rpl-36 (60S ribosomal protein L36 [Source:UniProtKB/Swiss-Prot;Acc:P49181]) HSP 1 Score: 102.449 bits (254), Expect = 2.740e-29 Identity = 50/91 (54.95%), Postives = 65/91 (71.43%), Query Frame = -3 Query: 60 MSGIAVGLNKGHAVTKLAKKVKPSHGKGKQSSSAKFCRDLIKEIVGLAPYEKRIIELLKIQKDKRALKFAKRRVGGHSRAKRVRENMSKVI 332 + G+AVGLNKGHA T+L K + + KG S K R+L++EI G APYE+R++E+L+I KDKRALKF KRR+G H RAK RE + VI Sbjct: 6 IEGLAVGLNKGHAATQLPVKQRQNRHKGVASKKTKIVRELVREITGFAPYERRVLEMLRISKDKRALKFLKRRIGTHRRAKGKREELQNVI 96
BLAST of SMED30031646 vs. Ensembl Fly
Match: RpL36 (gene:FBgn0002579 transcript:FBtr0070158) HSP 1 Score: 99.3673 bits (246), Expect = 8.733e-28 Identity = 54/102 (52.94%), Postives = 69/102 (67.65%), Query Frame = -3 Query: 48 IAVGLNKGHAVTKL-------AKKVKPSHG---KGKQSSSAKFCRDLIKEIVGLAPYEKRIIELLKIQKDKRALKFAKRRVGGHSRAKRVRENMSKVIRNMR 323 +A+GLNKGH +K+ KKVK G K Q+ KF RDL++E+VG APYEKR +ELLK+ KDKRALKF KRR+G H RAKR RE +S ++ +R Sbjct: 7 LAIGLNKGHKTSKIRNVKYTGDKKVKGLRGSRLKNIQTRHTKFMRDLVREVVGHAPYEKRTMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNILTQLR 108
BLAST of SMED30031646 vs. Ensembl Fly
Match: RpL36 (gene:FBgn0002579 transcript:FBtr0070155) HSP 1 Score: 99.3673 bits (246), Expect = 8.733e-28 Identity = 54/102 (52.94%), Postives = 69/102 (67.65%), Query Frame = -3 Query: 48 IAVGLNKGHAVTKL-------AKKVKPSHG---KGKQSSSAKFCRDLIKEIVGLAPYEKRIIELLKIQKDKRALKFAKRRVGGHSRAKRVRENMSKVIRNMR 323 +A+GLNKGH +K+ KKVK G K Q+ KF RDL++E+VG APYEKR +ELLK+ KDKRALKF KRR+G H RAKR RE +S ++ +R Sbjct: 7 LAIGLNKGHKTSKIRNVKYTGDKKVKGLRGSRLKNIQTRHTKFMRDLVREVVGHAPYEKRTMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNILTQLR 108
BLAST of SMED30031646 vs. Ensembl Fly
Match: RpL36 (gene:FBgn0002579 transcript:FBtr0070156) HSP 1 Score: 99.3673 bits (246), Expect = 8.733e-28 Identity = 54/102 (52.94%), Postives = 69/102 (67.65%), Query Frame = -3 Query: 48 IAVGLNKGHAVTKL-------AKKVKPSHG---KGKQSSSAKFCRDLIKEIVGLAPYEKRIIELLKIQKDKRALKFAKRRVGGHSRAKRVRENMSKVIRNMR 323 +A+GLNKGH +K+ KKVK G K Q+ KF RDL++E+VG APYEKR +ELLK+ KDKRALKF KRR+G H RAKR RE +S ++ +R Sbjct: 7 LAIGLNKGHKTSKIRNVKYTGDKKVKGLRGSRLKNIQTRHTKFMRDLVREVVGHAPYEKRTMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNILTQLR 108
BLAST of SMED30031646 vs. Ensembl Fly
Match: RpL36 (gene:FBgn0002579 transcript:FBtr0070157) HSP 1 Score: 99.3673 bits (246), Expect = 8.733e-28 Identity = 54/102 (52.94%), Postives = 69/102 (67.65%), Query Frame = -3 Query: 48 IAVGLNKGHAVTKL-------AKKVKPSHG---KGKQSSSAKFCRDLIKEIVGLAPYEKRIIELLKIQKDKRALKFAKRRVGGHSRAKRVRENMSKVIRNMR 323 +A+GLNKGH +K+ KKVK G K Q+ KF RDL++E+VG APYEKR +ELLK+ KDKRALKF KRR+G H RAKR RE +S ++ +R Sbjct: 7 LAIGLNKGHKTSKIRNVKYTGDKKVKGLRGSRLKNIQTRHTKFMRDLVREVVGHAPYEKRTMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNILTQLR 108
BLAST of SMED30031646 vs. Ensembl Fly
Match: RpL36 (gene:FBgn0002579 transcript:FBtr0345321) HSP 1 Score: 99.3673 bits (246), Expect = 8.733e-28 Identity = 54/102 (52.94%), Postives = 69/102 (67.65%), Query Frame = -3 Query: 48 IAVGLNKGHAVTKL-------AKKVKPSHG---KGKQSSSAKFCRDLIKEIVGLAPYEKRIIELLKIQKDKRALKFAKRRVGGHSRAKRVRENMSKVIRNMR 323 +A+GLNKGH +K+ KKVK G K Q+ KF RDL++E+VG APYEKR +ELLK+ KDKRALKF KRR+G H RAKR RE +S ++ +R Sbjct: 7 LAIGLNKGHKTSKIRNVKYTGDKKVKGLRGSRLKNIQTRHTKFMRDLVREVVGHAPYEKRTMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNILTQLR 108
BLAST of SMED30031646 vs. Ensembl Zebrafish
Match: rpl36 (ribosomal protein L36 [Source:NCBI gene;Acc:405888]) HSP 1 Score: 105.145 bits (261), Expect = 4.259e-30 Identity = 53/88 (60.23%), Postives = 65/88 (73.86%), Query Frame = -3 Query: 60 IAVGLNKGHAVTKLAKKVKPSHGKGKQSSSAKFCRDLIKEIVGLAPYEKRIIELLKIQKDKRALKFAKRRVGGHSRAKRVRENMSKVI 323 +AVGLNKGH VTK K K S +G+ + AKF RDLI+E+ G APYE+R +ELLK+ KDKRALKF K+RVG H RAKR RE +S + Sbjct: 7 MAVGLNKGHKVTKNVSKPKHSRRRGRLTKHAKFARDLIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNTL 94
BLAST of SMED30031646 vs. Ensembl Zebrafish
Match: rpl36 (ribosomal protein L36 [Source:NCBI gene;Acc:405888]) HSP 1 Score: 105.145 bits (261), Expect = 4.259e-30 Identity = 53/88 (60.23%), Postives = 65/88 (73.86%), Query Frame = -3 Query: 60 IAVGLNKGHAVTKLAKKVKPSHGKGKQSSSAKFCRDLIKEIVGLAPYEKRIIELLKIQKDKRALKFAKRRVGGHSRAKRVRENMSKVI 323 +AVGLNKGH VTK K K S +G+ + AKF RDLI+E+ G APYE+R +ELLK+ KDKRALKF K+RVG H RAKR RE +S + Sbjct: 7 MAVGLNKGHKVTKNVSKPKHSRRRGRLTKHAKFARDLIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNTL 94
BLAST of SMED30031646 vs. Ensembl Xenopus
Match: gpatch1 (G-patch domain containing 1 [Source:Xenbase;Acc:XB-GENE-953282]) HSP 1 Score: 100.908 bits (250), Expect = 2.480e-28 Identity = 50/92 (54.35%), Postives = 65/92 (70.65%), Query Frame = -3 Query: 60 IMSGIAVGLNKGHAVTKLAKKVKPSHGKGKQSSSAKFCRDLIKEIVGLAPYEKRIIELLKIQKDKRALKFAKRRVGGHSRAKRVRENMSKVI 335 I +AVGLNKGH VTK K + +G+ + KF RD+I+E+ G APYE+R +ELLK+ KDKRALKF K+R+G H RAKR RE +S V+ Sbjct: 3 IRYPMAVGLNKGHRVTKNVTKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRIGTHIRAKRKREELSNVL 94
BLAST of SMED30031646 vs. Ensembl Mouse
Match: Rpl36 (ribosomal protein L36 [Source:MGI Symbol;Acc:MGI:1860603]) HSP 1 Score: 103.219 bits (256), Expect = 2.441e-29 Identity = 51/88 (57.95%), Postives = 65/88 (73.86%), Query Frame = -3 Query: 60 IAVGLNKGHAVTKLAKKVKPSHGKGKQSSSAKFCRDLIKEIVGLAPYEKRIIELLKIQKDKRALKFAKRRVGGHSRAKRVRENMSKVI 323 +AVGLNKGH VTK K + S +G+ + KF RD+I+E+ G APYE+R +ELLK+ KDKRALKF K+RVG H RAKR RE +S V+ Sbjct: 7 MAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL 94
BLAST of SMED30031646 vs. UniProt/SwissProt
Match: sp|Q9LZ57|RL363_ARATH (60S ribosomal protein L36-3 OS=Arabidopsis thaliana OX=3702 GN=RPL36C PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 5.816e-33 Identity = 58/96 (60.42%), Postives = 71/96 (73.96%), Query Frame = -3 Query: 48 IMSGIAVGLNKGHAVTKLAKKVKPSHGKGKQSSSAKFCRDLIKEIVGLAPYEKRIIELLKIQKDKRALKFAKRRVGGHSRAKRVRENMSKVIRNMR 335 + +G+ VGLNKGH VTK + +P++ KGK S F R+LIKE+ G APYEKRI ELLK+ KDKRALK AKR++G H RAKR RE MS V+R MR Sbjct: 2 VATGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 97
BLAST of SMED30031646 vs. UniProt/SwissProt
Match: sp|O80929|RL361_ARATH (60S ribosomal protein L36-1 OS=Arabidopsis thaliana OX=3702 GN=RPL36A PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 2.759e-31 Identity = 56/96 (58.33%), Postives = 69/96 (71.88%), Query Frame = -3 Query: 48 IMSGIAVGLNKGHAVTKLAKKVKPSHGKGKQSSSAKFCRDLIKEIVGLAPYEKRIIELLKIQKDKRALKFAKRRVGGHSRAKRVRENMSKVIRNMR 335 + +G+ VGLNKGH VT+ +P+ KGK S F R LI+E+ G+APYEKRI ELLK+ KDKRALK AKR++G H RAKR RE MS V+R MR Sbjct: 6 VKTGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 101
BLAST of SMED30031646 vs. UniProt/SwissProt
Match: sp|Q9M352|RL362_ARATH (60S ribosomal protein L36-2 OS=Arabidopsis thaliana OX=3702 GN=RPL36B PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 4.380e-31 Identity = 57/96 (59.38%), Postives = 68/96 (70.83%), Query Frame = -3 Query: 48 IMSGIAVGLNKGHAVTKLAKKVKPSHGKGKQSSSAKFCRDLIKEIVGLAPYEKRIIELLKIQKDKRALKFAKRRVGGHSRAKRVRENMSKVIRNMR 335 + +G+ VGLNKGH VT+ +P KGK S F R+LIKE+ G APYEKRI ELLK+ KDKRALK AKR++G H RAKR RE MS V+R MR Sbjct: 6 VKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 101
BLAST of SMED30031646 vs. UniProt/SwissProt
Match: sp|Q6Q415|RL36_DANRE (60S ribosomal protein L36 OS=Danio rerio OX=7955 GN=rpl36 PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 3.215e-29 Identity = 53/88 (60.23%), Postives = 65/88 (73.86%), Query Frame = -3 Query: 60 IAVGLNKGHAVTKLAKKVKPSHGKGKQSSSAKFCRDLIKEIVGLAPYEKRIIELLKIQKDKRALKFAKRRVGGHSRAKRVRENMSKVI 323 +AVGLNKGH VTK K K S +G+ + AKF RDLI+E+ G APYE+R +ELLK+ KDKRALKF K+RVG H RAKR RE +S + Sbjct: 7 MAVGLNKGHKVTKNVSKPKHSRRRGRLTKHAKFARDLIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNTL 94
BLAST of SMED30031646 vs. UniProt/SwissProt
Match: sp|Q5RAZ9|RL36_PONAB (60S ribosomal protein L36 OS=Pongo abelii OX=9601 GN=RPL36 PE=3 SV=3) HSP 1 Score: 103.219 bits (256), Expect = 1.708e-28 Identity = 51/88 (57.95%), Postives = 65/88 (73.86%), Query Frame = -3 Query: 60 IAVGLNKGHAVTKLAKKVKPSHGKGKQSSSAKFCRDLIKEIVGLAPYEKRIIELLKIQKDKRALKFAKRRVGGHSRAKRVRENMSKVI 323 +AVGLNKGH VTK K + S +G+ + KF RD+I+E+ G APYE+R +ELLK+ KDKRALKF K+RVG H RAKR RE +S V+ Sbjct: 7 MAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL 94
BLAST of SMED30031646 vs. TrEMBL
Match: T1FZ60 (60S ribosomal protein L36 OS=Helobdella robusta OX=6412 GN=20214108 PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 4.218e-32 Identity = 59/96 (61.46%), Postives = 73/96 (76.04%), Query Frame = -3 Query: 48 IMSGIAVGLNKGHAVTKLAKKVKPSHGKGKQSSSAKFCRDLIKEIVGLAPYEKRIIELLKIQKDKRALKFAKRRVGGHSRAKRVRENMSKVIRNMR 335 I+ +AVGL KGH V+KLAK+ +PS KG Q+ AKF RDL++++ G APYEKR +ELLK+ KDKRALKF KRR+G H R KR RE MS VI+ MR Sbjct: 3 IIHDMAVGLKKGHKVSKLAKRKRPSTRKGTQTKHAKFVRDLVRDVCGFAPYEKRSMELLKVGKDKRALKFCKRRLGTHLRGKRKREEMSTVIQKMR 98
BLAST of SMED30031646 vs. TrEMBL
Match: A0A388KE88 (60S ribosomal protein L36 OS=Chara braunii OX=69332 GN=CBR_g2812 PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 6.667e-32 Identity = 61/95 (64.21%), Postives = 70/95 (73.68%), Query Frame = -3 Query: 48 MSGIAVGLNKGHAVTKLAKKVKPSHGKGKQSSSAKFCRDLIKEIVGLAPYEKRIIELLKIQKDKRALKFAKRRVGGHSRAKRVRENMSKVIRNMR 332 MSGIAVGLNKGH VTK K +PS KG+ KF R LI+E+ G APYEKRI ELLK+ KDKRALK AKR++G H RAKR RE M+ V+R MR Sbjct: 1 MSGIAVGLNKGHVVTKREKVARPSDRKGRLGKRTKFVRALIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHLRAKRKREEMASVLRKMR 95
BLAST of SMED30031646 vs. TrEMBL
Match: A0A178UKY0 (60S ribosomal protein L36 OS=Arabidopsis thaliana OX=3702 GN=AXX17_At5g01580 PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 1.724e-30 Identity = 58/96 (60.42%), Postives = 71/96 (73.96%), Query Frame = -3 Query: 48 IMSGIAVGLNKGHAVTKLAKKVKPSHGKGKQSSSAKFCRDLIKEIVGLAPYEKRIIELLKIQKDKRALKFAKRRVGGHSRAKRVRENMSKVIRNMR 335 + +G+ VGLNKGH VTK + +P++ KGK S F R+LIKE+ G APYEKRI ELLK+ KDKRALK AKR++G H RAKR RE MS V+R MR Sbjct: 2 VATGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 97
BLAST of SMED30031646 vs. TrEMBL
Match: A0A328E1P7 (Uncharacterized protein OS=Cuscuta australis OX=267555 GN=DM860_010922 PE=4 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 2.358e-30 Identity = 60/94 (63.83%), Postives = 69/94 (73.40%), Query Frame = -3 Query: 48 SGIAVGLNKGHAVTKLAKKVKPSHGKGKQSSSAKFCRDLIKEIVGLAPYEKRIIELLKIQKDKRALKFAKRRVGGHSRAKRVRENMSKVIRNMR 329 SG+ VGLNKGH VTK +PS KGK S F R+LI+E+ G APYEKRI ELLK+ KDKRALK AKR++G H RAKR RE MSKV+R MR Sbjct: 8 SGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVHFVRNLIREVAGFAPYEKRISELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSKVLRKMR 101
BLAST of SMED30031646 vs. TrEMBL
Match: A0A484L8K0 (Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS14478 PE=4 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 2.358e-30 Identity = 60/94 (63.83%), Postives = 69/94 (73.40%), Query Frame = -3 Query: 48 SGIAVGLNKGHAVTKLAKKVKPSHGKGKQSSSAKFCRDLIKEIVGLAPYEKRIIELLKIQKDKRALKFAKRRVGGHSRAKRVRENMSKVIRNMR 329 SG+ VGLNKGH VTK +PS KGK S F R+LI+E+ G APYEKRI ELLK+ KDKRALK AKR++G H RAKR RE MSKV+R MR Sbjct: 8 SGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVHFVRNLIREVAGFAPYEKRISELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSKVLRKMR 101
BLAST of SMED30031646 vs. Ensembl Cavefish
Match: rpl36 (ribosomal protein L36 [Source:NCBI gene;Acc:103025778]) HSP 1 Score: 103.605 bits (257), Expect = 1.558e-29 Identity = 51/92 (55.43%), Postives = 66/92 (71.74%), Query Frame = -3 Query: 60 IMSGIAVGLNKGHAVTKLAKKVKPSHGKGKQSSSAKFCRDLIKEIVGLAPYEKRIIELLKIQKDKRALKFAKRRVGGHSRAKRVRENMSKVI 335 I +AVGLNKGH VTK K + S +G+ + KF RD+I+E+ G APYE+R +ELLK+ KDKRALKF K+RVG H RAKR RE +S ++ Sbjct: 3 IRYPMAVGLNKGHPVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNIL 94
BLAST of SMED30031646 vs. Ensembl Cavefish
Match: rpl36 (ribosomal protein L36 [Source:NCBI gene;Acc:103025778]) HSP 1 Score: 103.605 bits (257), Expect = 8.899e-29 Identity = 52/99 (52.53%), Postives = 70/99 (70.71%), Query Frame = -3 Query: 60 LEYLKV*IMSGIAVGLNKGHAVTKLAKKVKPSHGKGKQSSSAKFCRDLIKEIVGLAPYEKRIIELLKIQKDKRALKFAKRRVGGHSRAKRVRENMSKVI 356 +E ++ I +AVGLNKGH VTK K + S +G+ + KF RD+I+E+ G APYE+R +ELLK+ KDKRALKF K+RVG H RAKR RE +S ++ Sbjct: 68 MEMNEMAIRYPMAVGLNKGHPVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNIL 166
BLAST of SMED30031646 vs. Ensembl Yeast
Match: RPL36B (Ribosomal 60S subunit protein L36B; binds to 5.8 S rRNA; homologous to mammalian ribosomal protein L36, no bacterial homolog; RPL36B has a paralog, RPL36A, that arose from the whole genome duplication [Source:SGD;Acc:S000006438]) HSP 1 Score: 86.6557 bits (213), Expect = 6.531e-24 Identity = 43/92 (46.74%), Postives = 64/92 (69.57%), Query Frame = -3 Query: 60 IMSGIAVGLNKGHAVTKLAKKVKPSHGKGKQSSSAKFCRDLIKEIVGLAPYEKRIIELLKIQKDKRALKFAKRRVGGHSRAKRVRENMSKVI 335 + +GIA+GLNKG VT++ K S+ KG S+ KF R L++EI GL+PYE+R+I+L++ +KRA K AK+R+G +RAK E M+ +I Sbjct: 3 VKTGIAIGLNKGKKVTQMTPAPKISYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRNSGEKRARKVAKKRLGSFTRAKAKVEEMNNII 94
BLAST of SMED30031646 vs. Ensembl Yeast
Match: RPL36A (Ribosomal 60S subunit protein L36A; N-terminally acetylated; binds to 5.8 S rRNA; homologous to mammalian ribosomal protein L36, no bacterial homolog; RPL36A has a paralog, RPL36B, that arose from the whole genome duplication [Source:SGD;Acc:S000004807]) HSP 1 Score: 86.2705 bits (212), Expect = 9.876e-24 Identity = 43/92 (46.74%), Postives = 63/92 (68.48%), Query Frame = -3 Query: 60 IMSGIAVGLNKGHAVTKLAKKVKPSHGKGKQSSSAKFCRDLIKEIVGLAPYEKRIIELLKIQKDKRALKFAKRRVGGHSRAKRVRENMSKVI 335 + +GIA+GLNKG VT + K S+ KG S+ KF R L++EI GL+PYE+R+I+L++ +KRA K AK+R+G +RAK E M+ +I Sbjct: 3 VKTGIAIGLNKGKKVTSMTPAPKISYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRNSGEKRARKVAKKRLGSFTRAKAKVEEMNNII 94
BLAST of SMED30031646 vs. Ensembl Nematostella
Match: EDO34606 (60S ribosomal protein L36 [Source:UniProtKB/TrEMBL;Acc:A7SNU0]) HSP 1 Score: 106.686 bits (265), Expect = 3.390e-31 Identity = 53/92 (57.61%), Postives = 67/92 (72.83%), Query Frame = -3 Query: 48 IAVGLNKGHAVTKLAKKVKPSHGKGKQSSSAKFCRDLIKEIVGLAPYEKRIIELLKIQKDKRALKFAKRRVGGHSRAKRVRENMSKVIRNMR 323 +AVGL KGH VTK K KPS KG + KF RD+++E+VG APYEKR++ELL+I KDKRALKF K+R+G H R KR RE ++ V+ MR Sbjct: 7 MAVGLQKGHKVTKNVTKPKPSRRKGASNKRVKFVRDVVREVVGFAPYEKRVMELLRIGKDKRALKFCKKRLGTHVRGKRKREEITSVLAAMR 98
BLAST of SMED30031646 vs. Ensembl Medaka
Match: rpl36 (ribosomal protein L36 [Source:NCBI gene;Acc:101158513]) HSP 1 Score: 101.679 bits (252), Expect = 6.905e-29 Identity = 51/92 (55.43%), Postives = 65/92 (70.65%), Query Frame = -3 Query: 60 IMSGIAVGLNKGHAVTKLAKKVKPSHGKGKQSSSAKFCRDLIKEIVGLAPYEKRIIELLKIQKDKRALKFAKRRVGGHSRAKRVRENMSKVI 335 I +AVGLNKGH VTK K S +G+ + KF RD+I+E+ G APYE+R +ELLK+ KDKRALKF K+R+G H RAKR RE +S V+ Sbjct: 3 IRYPMAVGLNKGHPVTKNVAAPKHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRIGTHIRAKRKREELSNVL 94
BLAST of SMED30031646 vs. Planmine SMEST
Match: SMESG000010156.1 (SMESG000010156.1) HSP 1 Score: 188.348 bits (477), Expect = 2.319e-63 Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = -3 Query: 48 MSGIAVGLNKGHAVTKLAKKVKPSHGKGKQSSSAKFCRDLIKEIVGLAPYEKRIIELLKIQKDKRALKFAKRRVGGHSRAKRVRENMSKVIRNMR 332 MSGIAVGLNKGHAVTKLAKKVKPSHGKGKQSSSAKFCRDLIKEIVGLAPYEKRIIELLKIQKDKRALKFAKRRVGGHSRAKRVRENMSKVIRNMR Sbjct: 1 MSGIAVGLNKGHAVTKLAKKVKPSHGKGKQSSSAKFCRDLIKEIVGLAPYEKRIIELLKIQKDKRALKFAKRRVGGHSRAKRVRENMSKVIRNMR 95 The following BLAST results are available for this feature:
BLAST of SMED30031646 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of SMED30031646 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 2
BLAST of SMED30031646 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 5
BLAST of SMED30031646 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 2
BLAST of SMED30031646 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 1
BLAST of SMED30031646 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 1
BLAST of SMED30031646 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of SMED30031646 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30031646 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 2
BLAST of SMED30031646 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30031646 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 2
BLAST of SMED30031646 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of SMED30031646 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 1
BLAST of SMED30031646 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 1
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30031646 ID=SMED30031646|Name=SMED30031646|organism=Schmidtea mediterranea sexual|type=transcript|length=388bpback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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