Cyclic nucleotide-binding domain-containing protein

Overview
NameCyclic nucleotide-binding domain-containing protein
Smed IDSMED30031605
Length (bp)2264
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Cyclic nucleotide-binding domain-containing protein (SMED30031605) t-SNE clustered cells

Violin plots show distribution of expression levels for Cyclic nucleotide-binding domain-containing protein (SMED30031605) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Cyclic nucleotide-binding domain-containing protein (SMED30031605) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Cyclic nucleotide-binding domain-containing protein (SMED30031605) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30031605

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 9

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
nervous systemSMED30031605SMESG000076149.1 dd_Smed_v4_11972_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30031605SMESG000076149.1 dd_Smed_v4_11972_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30031605SMESG000076149.1 dd_Smed_v4_11972_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neuronSMED30031605SMESG000076149.1 dd_Smed_v4_11972_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		whole organism asexual adult colorimetric in situ hybridization evidence
cilated neuronSMED30031605SMESG000076149.1 dd_Smed_v4_11972_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30031605SMESG000076149.1 Contig50779newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30031605SMESG000076149.1 Contig50779uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
epidermisSMED30031605SMESG000076149.1 dd_Smed_v4_11972_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
dorsal region of the epidermisSMED30031605SMESG000076149.1 dd_Smed_v4_11972_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Cyclic nucleotide-binding domain-containing protein vs. TrEMBL
Match: V4BAB9 (Cyclic nucleotide-binding domain-containing protein OS=Lottia gigantea OX=225164 GN=LOTGIDRAFT_237366 PE=4 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 3.551e-59
Identity = 167/593 (28.16%), Postives = 295/593 (49.75%), Query Frame = 2 
Query:  563 LTDDDDAHSKIINWRISELESMCSKTVRPEYILHSLNSNLQQYVTSLIPVSREEFETEIRKSWMPIDLFKYAVRMVQMISFIGKSHTRYPWWKESDNSGYPETTTNKDKSLTKYSIKPDLRMSLTTNPRFRTKSEIRQIIWFMQTVEAFTDLFPKEMEIELARCIGYEIYEDNRVVILQDNVPQKLYHILMGKLELIYVYKLMQGEVHKSMGFLTHNQTNNLTDFQNNSPSAAYFVARGQLEVLTLHKEDYLHLSSQSNLEPIRTFLKNLIIFKSFDISESTFQKKMIKIQYFRNEKVITADPSNDPFFYVVKSGTVAVTRKQGVYDTDLSHLWNSNSVYSLGCKREGSHASKMIQINDRQVTLNESKINKNISEINQELEEESSICHKSNQIKPHTSN----GPR--INRNFDQETL-----------------------INDFPKSHTMMNITRTKEN--------KQIKSKVTNIPISIAKKATKKERITYIKLDTLKVLDVYXXXXXXXXXXXXXXXSVAKSNFILISEGAEVIMINKRYFLRHIDNNTLLEIRKIVKSYIGEEEAKRLIDDEKKWKAYKKILMQKMIA 2230
            L D+D   S  IN R+ E++SM     +    L  L+S     + ++     EE   + RK+   ID+F++A++M+ MI+       RY +    D S       ++  S ++ S+  +++M L+++P  RT  ++++I W ++   A+  LFP E+E +LA+ + YE Y+DNR++  QD  P++ Y +L G+++ +  Y+L  G V KSMGF+    T++        P   + VA+G +EVL LH+ED++ L   ++  PI  FL+ + +F  F   +   +   I+ +Y+    +I  D  + P+ ++VKSG V V R Q V D     ++   +   LGC R  SHAS M+ +  +Q         + +  + ++  EE  +     +IKP   +     PR  I++   QE +                       +   P     M+  R  +          + K++V  +  S ++K  +  R  Y++LD L   D++GLETL+  +           +  L+S+GAEVI INKR+FL+H   NT+L++  + + ++  EE K ++ D++ W  YK +LMQK+I+
Sbjct:  110 LPDNDPLDS--INQRLEEIQSMVKPRAKIPDFLTDLSSEQLGKIMTVSVDDVEERREKRRKASKVIDMFRHAIQMILMINKTAIPKKRYHF---QDASQPKNVEDDEIASASRSSLSNEVQMGLSSSPEHRTSKDLKRITWVLRATRAYKHLFPDELEKDLAQIVAYERYDDNRLIASQDKAPERFYFVLNGRIQKLREYQLSSGCVDKSMGFINKGMTSSTEQLIKQFPREYHLVAKGPVEVLILHREDFMRLKITTHGPPIE-FLRTIELFSEFPCEKVVSRPDSIEFKYYGQNTIIAKDAFDTPWIHIVKSGHVKVVRVQYVVDVTNDSIFEGQTTEELGCGRAFSHASAMLGVIAKQ---------RELKALKEDEGEEDDVRFFKYEIKPSKQSIHRKTPRTEIHKKTSQEKVKLPEISVQEIKEDSQSPLSSSRSLTLPPIVKATMSTPRVGDGFHAHGTFLTREKTEVDPLLSSRSRKKEQTHRRAYLQLDVLSQGDIFGLETLDSPQVNPVINEGPAVS--LMSDGAEVIKINKRFFLQHAQYNTMLKVETLQREFLTTEEVKSILYDQETWTQYKHLLMQKLIS 685
[Close]
BLAST of Cyclic nucleotide-binding domain-containing protein vs. TrEMBL
Match: A0A210PT20 (Cyclic nucleotide-binding domain-containing protein 2 OS=Mizuhopecten yessoensis OX=6573 GN=KP79_PYT13152 PE=4 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 7.121e-57
Identity = 163/585 (27.86%), Postives = 282/585 (48.21%), Query Frame = 2 
Query:  737 IRKSWMPIDLFKYAVRMVQMISFIGKSHTRYPWWKESDNSGYPETT----------TNKDKSLTKYSIKPDLRMSLTTNPRFRTKSEIRQIIWFMQTVEAFTDLFPKEMEIELARCIGYEIYEDNRVVILQDNVPQKLYHILMGKLELIYVYKLMQGEVHKSMGFLTHNQTNNLTDFQNNSPSAAYFVARGQLEVLTLHKEDYLHLSSQSNLEPIRTFLKNLIIFKSFDISESTFQKKMIKIQYFRNEKVITADPSNDPFFYVVKSGTVAVTRKQGVYDTDLSHLWNSNSVYSLGCKREGSHAS----------KMIQINDRQVTLNE----SKINKNISEINQELEE----------ESSICHKSNQIK----------------PHTSNGPRINRNFDQE------TLINDFPKSH--------TMMNIT-RTKENKQIKSKVTNI--------PISIAKKATK--KERITYIKLDTLKVLDVYXXXXXXXXXXXXXXXSVAKS-------------NFILISEGAEVIMINKRYFLRHIDNNTLLEIRKIVKSYIGEEEAKRLIDDEKKWKAYKKILMQKMI 2227
             ++    I+ FK+AV +V +++    S  +Y  +KE      PET             +DK  ++ S+  D++++ +T P +R+KS+I++IIW ++  +AF  LFP E+E ++ARC+ YE Y+ NR++ LQ+  P++ Y+I+ GK++ +  Y+L  G V +S G++    T +  + +       + V+RGQ+EVL +H++D+L L +++   PI  FL+ L +F  F           I ++Y+  +  I  D +  P+ ++VKSG V V R Q V D +    + S S   LGC R  SHA           KM  ++   ++L E     K +     ++  +E+          E++   +SN+ K                P +  G R +   D E      T   D P            +MN T R   N ++    T +        P+  A+KATK  K R  Y++LD L   D++GL+ +      +      +                IL+S+GAEVI I+KR+FL H  NNT+L +  + + Y+  +EAK ++  ++ W  YK +LM++++
Sbjct:  246 FKRGMRAIEKFKHAVELVLILARACISRRKY--YKEVK----PETALAVKRLRQKGQREDKDTSRSSLAFDMQLAFSTEPNYRSKSDIKKIIWVLRATKAFKQLFPVEVEADVARCVAYERYDSNRILALQERDPERFYYIMSGKVQKVQEYRLSSGLVTRSEGYIEKGTTTDAQELEMAWQREHHLVSRGQVEVLIIHRDDFLRLRNRTLGPPI-DFLRKLDLFLEFPCDVFKTNPDSIHLKYYGQDVTIVEDTNRTPWIHIVKSGRVRVVRIQSVIDVETDRKFMSQSTEELGCGRSFSHAQAMIGSLMSQRKMKALSGSNISLPEITKRRKPSVTTPPLHSPMEQDETKTGNLAVEATERQRSNKRKAKYVKPPIVVEQGVDNPSSGRGSRADITPDTELPDILITNGQDTPAKKNDKRTSFPPIMNSTERPHTNGELHPHGTYLTREMTEFDPV-YARKATKEIKLRPAYLQLDVLNPGDIFGLDAISKKFHSQLRRPGEQGLEHLQPPTASESKGVILVSDGAEVIEISKRFFLEHAQNNTMLRVETMQREYMNNDEAKDILYTKETWDQYKNVLMRRLV 822
[Close]
BLAST of Cyclic nucleotide-binding domain-containing protein vs. TrEMBL
Match: A0A2T7PN89 (Cyclic nucleotide-binding domain-containing protein OS=Pomacea canaliculata OX=400727 GN=C0Q70_06164 PE=4 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.995e-50
Identity = 154/557 (27.65%), Postives = 261/557 (46.86%), Query Frame = 2 
Query:  554 LNSLTDDDDAHSKIINWRISELESMCSKTVRPEYILHSLNSNLQQYVTSLIPVSREEFETEIRKSWMPIDLFKYAVRMVQMISFIGKSHTRYPWWKESDNSGYP---------ETTTNKDKSLTKYSIKPDLRMSLTTNPRFRTKSEIRQIIWFMQTVEAFTDLFPKEMEIELARCIGYEIYEDNRVVILQDNVPQKLYHILMGKLELIYVYKLMQGEVHKSMGFLTHNQTNNLTDFQNNSPSAAYFVARGQLEVLTLHKEDYLHLSSQSNLEPIRTFLKNLIIFKSFDISESTFQKKMIKIQYFRNEKVITADPSNDPFFYVVKSGTVAVTRKQGVYDTDLSHLWNSNSVYSLGCKREGSHASKMIQINDRQVTLNESKINKNISEINQELEEESSICHKSNQIKP------HTSNGPRINRNFDQETLINDFP-----KSHTMMNITR----TKENKQIKSKVTNIP------ISIAKKATKKE--RITYIKLDTLKVLDVYXXXXXXXXXX--------------XXXXXSVAKSNFILISEGAEVIMINKRYF 2086
            L  L  +DD+   I N R+ E++SM         +L  L S  +  +  L   + + F+ + RK W P D    A+R V +++    S  RY  +  +D    P             ++ K + KYS+  +++++LTT P +RT   ++++ W ++T +AF  LFP+E+E ++A  +GYE Y+DNR +  Q   P++ Y++L G+++ +  YKL  G + K MGF+  N T++  + ++      + VA+G +EVLT+H++D++ L       PI  FL ++ +FK F           I  +Y+   +V+  D +  P+ YVVKSG V V R Q V D    + +       LGC R  SHA  M+ +  +Q  +   K + +I      L E++S    S  + P      H  N  + N   ++  ++   P     +  T + + R    T+E  +  S     P      +++ KK  K+   R  Y++LD L+  DV+GLE +                                L+S+GAE+I INKR F
Sbjct:  232 LTILLPEDDSLENISN-RLEEVQSMVKPKAEFSTLLKDLPSEQKDRILKLAYTNADVFKRDRRKDWKPQDRLLSAIRTVFLMTCACVSSRRY--FNSADPEAGPAVMRKQRKLHAEGSRGKGVGKYSLSSEMQLALTTPPEYRTHQHLKRVQWLLRTTKAFQHLFPEELEKDVAMVVGYERYDDNRHIAYQGRAPERFYYVLAGRVQQLKEYKLSLGCIIKPMGFMNKNATSDPEELEHQWLREYHLVAKGTVEVLTVHRDDFIRLQHTVQGPPI-DFLWSIELFKEFPCDLFLQNPDAIDFKYYGQNRVVAKDINKTPWLYVVKSGFVKVVRAQRVIDVQNENKFALQPTEELGCGRSFSHAHAMLDLLAKQRRM---KTDTDIV-----LPEKAS----STSVLPPISLSFHEPNISKTNSYSNKTHVVRSVPVGGSRRGSTNILVPRGTFLTRERTEAGSGAGASPLLLPSGVALGKKPKKEPIMRRAYLQLDLLRPGDVFGLEDIAEKFRYREDDEEEGLEHFDSPTNPDHQGPPISLVSDGAELIKINKRIF 772
[Close]
BLAST of Cyclic nucleotide-binding domain-containing protein vs. TrEMBL
Match: A0A267ESA2 (Cyclic nucleotide-binding domain-containing protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig019318g1 PE=4 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.633e-45
Identity = 128/430 (29.77%), Postives = 213/430 (49.53%), Query Frame = 2 
Query:  413 DEKTSEADEETQNEIQRNHLKNQYKNIEKLSKSMEQNKA--------------KWKKLEESL-----NSLTDDDDAHSKIINWRISELESMCSKTVRPEYILHSLNSNLQQYVTSLIPVSREEFETEIRKSWMPIDLFKYAVRMVQMISFIGKSHTRYPWWKESDNSGYPETTTNKDKSLTKYSIKPDLRMSLTTNPRFRTKSEIRQIIWFMQTVEAFTDLFPKEMEIELARCIGYEIYEDNRVVILQDNVPQKLYHILMGKLELIYVYKLMQGEVHKSMGFLTHNQTNNLTDFQNNSPSAAYFVARGQLEVLTLHKEDYLHLSSQSNLEPIRTFLKNLIIFKSFDISESTFQKKMIKIQYFRNEKVITADPSNDPFFYVVKSGTVAVTRKQGVYDTDLSHLWNSNSVYSLGCKREGSHASKMIQINDRQ 1645
            DE+T+ ++  T  E +   LK++  + +K  +   Q KA              KWK+L E       NS+    D  S +I  R++E+ +MCS+T   +Y + +L  ++QQ V  +  + R+ F    R+ W   D F YA RM ++++       R      S+     E      K L   S+   LR  L   P +RTK   ++I+WF++T + +T LF  EME E  + + YE Y+D R++ L D VP+K Y+++ GK+E    Y+L  G+  +    +T  QT+++   +   P     V  G  EVL+L +ED+L L   +       FLKN+ IF+ F   +     + I  +YF  ++VI  D ++ P+ +V+KSG+  V RKQ V     +  ++ + V  +G  + GSH++ M  +  RQ
Sbjct:  190 DEETNRSESPTSAEARERRLKHRLTSFDKRQEKFSQMKAAVKTYDVNMEMVIGKWKRLREDFIKLRANSVLASGDDGSLMITRRMTEIGNMCSRTTNADYYIATLPESVQQIVKKMAAMPRDVFLEARRRDWTSYDWFMYAGRMARVLAQGCLVRRRLTIDALSNGRSLSE------KDLLTNSVSKTLRDCLCFCPEYRTKEMRQKILWFLRTNKVYTHLFSSEMEEECTKYVFYEKYQDGRILSLVDRVPEKFYYVISGKIERRKTYELRSGDYDRVFSVITKGQTSDVELMELQRPKKFTLVTSGVTEVLSLEREDFLLLLKGTGGL-PLNFLKNIGIFQEFPCGKFLESPEAIATRYFPKDRVILDDITDTPYIHVIKSGSAKVIRKQLVVHYPRNK-YSRDRV--IGYSKLGSHSTDMQGLTQRQ 609

HSP 2 Score: 62.3882 bits (150), Expect = 4.073e-6
Identity = 33/106 (31.13%), Postives = 63/106 (59.43%), Query Frame = 2 
Query: 1913 KKERITYIKLDTLKVLDVYXXXXXXXXXXXXXXXSVAKSNFILISEGAEVIMINKRYFLRHIDNNTLLEIRKIVKSYIGEEEAKRLIDDEKKWKAYKKILMQKMIA 2230
            + +R  Y+ LDTL+  D  G + +  L   ++     K+   L+S+GAE+I+INKR+F+++  NNTLL+   + + +  + EA   I+ ++ W+ ++   +Q+M A
Sbjct:  757 RPQREAYVVLDTLRNGDFLGFKNITTLIEGKRIVRDKKNVLSLLSDGAEIILINKRFFVQNAANNTLLKAETMARDFASKSEASESIEAKEDWEMFRAAFVQRMAA 862
[Close]
BLAST of Cyclic nucleotide-binding domain-containing protein vs. TrEMBL
Match: A0A267DFI2 (Cyclic nucleotide-binding domain-containing protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig026220g1 PE=4 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.813e-45
Identity = 128/430 (29.77%), Postives = 213/430 (49.53%), Query Frame = 2 
Query:  413 DEKTSEADEETQNEIQRNHLKNQYKNIEKLSKSMEQNKA--------------KWKKLEESL-----NSLTDDDDAHSKIINWRISELESMCSKTVRPEYILHSLNSNLQQYVTSLIPVSREEFETEIRKSWMPIDLFKYAVRMVQMISFIGKSHTRYPWWKESDNSGYPETTTNKDKSLTKYSIKPDLRMSLTTNPRFRTKSEIRQIIWFMQTVEAFTDLFPKEMEIELARCIGYEIYEDNRVVILQDNVPQKLYHILMGKLELIYVYKLMQGEVHKSMGFLTHNQTNNLTDFQNNSPSAAYFVARGQLEVLTLHKEDYLHLSSQSNLEPIRTFLKNLIIFKSFDISESTFQKKMIKIQYFRNEKVITADPSNDPFFYVVKSGTVAVTRKQGVYDTDLSHLWNSNSVYSLGCKREGSHASKMIQINDRQ 1645
            DE+T+ ++  T  E +   LK++  + +K  +   Q KA              KWK+L E       NS+    D  S +I  R++E+ +MCS+T   +Y + +L  ++QQ V  +  + R+ F    R+ W   D F YA RM ++++       R      S+     E      K L   S+   LR  L   P +RTK   ++I+WF++T + +T LF  EME E  + + YE Y+D R++ L D VP+K Y+++ GK+E    Y+L  G+  +    +T  QT+++   +   P     V  G  EVL+L +ED+L L   +       FLKN+ IF+ F   +     + I  +YF  ++VI  D ++ P+ +V+KSG+  V RKQ V     +  ++ + V  +G  + GSH++ M  +  RQ
Sbjct:  192 DEETNRSESPTSAEARERRLKHRLTSFDKRQEKFSQMKAAVKTYDVNMEMVIGKWKRLREDFIKLRANSVLASGDDGSLMITRRMTEIGNMCSRTTNADYYIATLPESVQQIVKKMAAMPRDVFLEARRRDWTSYDWFMYAGRMARVLAQGCLVRRRLTIDALSNGRSLSE------KDLLTNSVSKTLRDCLCFCPEYRTKEMRQKILWFLRTNKVYTHLFSSEMEEECTKYVFYEKYQDGRILSLVDRVPEKFYYVISGKIERRKTYELRSGDYDRVFSVITKGQTSDVELMELQRPKKFTLVTSGVTEVLSLEREDFLLLLKGTGGL-PLNFLKNIGIFQEFPCGKFLESPEAIVTRYFPKDRVILDDITDTPYIHVIKSGSAKVIRKQLVVHYPRNK-YSRDRV--IGYSKLGSHSTDMQGLTQRQ 611

HSP 2 Score: 61.6178 bits (148), Expect = 6.147e-6
Identity = 33/106 (31.13%), Postives = 63/106 (59.43%), Query Frame = 2 
Query: 1913 KKERITYIKLDTLKVLDVYXXXXXXXXXXXXXXXSVAKSNFILISEGAEVIMINKRYFLRHIDNNTLLEIRKIVKSYIGEEEAKRLIDDEKKWKAYKKILMQKMIA 2230
            + +R  Y+ LDTL   D  G + +  L   ++     K+   L+S+GAE+I+INKR+F+++  NNTLL+   + + +  + EA + I+ ++ W+ ++   +Q+M A
Sbjct:  760 RPQREAYVVLDTLTNGDFLGFKNITTLIEGKRIVRDKKNVLSLLSDGAEIILINKRFFVQNAANNTLLKAETMARDFASKSEASQSIEAKEDWEMFRAAFVQRMAA 865
[Close]
BLAST of Cyclic nucleotide-binding domain-containing protein vs. Ensembl Nematostella
Match: EDO40488 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S790])

HSP 1 Score: 103.605 bits (257), Expect = 7.571e-24
Identity = 85/355 (23.94%), Postives = 165/355 (46.48%), Query Frame = 2 
Query: 1232 DFQNNSPSAAYFVARGQLEVLTLHKEDYLHLSSQSNLEPIRT-FLKNLIIFKSFDISESTFQKKMIKIQYFRNEKVITADPSNDPFFYVVKSGTVAVTRKQGVYDTDLSHLWNSNSVYSLGCKRE--GSHASKMIQINDRQVTLNE-----SKINKNISEINQELEEESSICHKSNQIKPHTSNGPRINRNFDQETLIN------DFPKSHTMMNITR--TKENKQIKSKVTNIPISIAKKATKKERITYIKLDTLKVLDVYXXXXXXXXXXXXXXXSV------AKSNFILISEGAEVIMINKRYFLRHIDNNTLLEIRKIVKSYIGEEEAKRLIDDEKKWKAYKKILMQKMIA 2230
            + Q N P     + +G +EVL L +ED++ L + S  + + T FL+++ +F+SF + +   +   I  +YF  + VI  D S+ P+F+++KSG   V R+Q V D   +       + S    R   G + + +++        ++      K+  N +E  Q    E  I   ++   P  +  P I R  D    +       D  K  + M++ R  T E  Q   + +++  ++        R   +++  LK  D++ LE++      +    +        ++  LISEGAE +MINKR+FL++    TL++ + + + Y   E+A++ I +++ W  YK  +++ +  
Sbjct:    7 EIQENIPREHSLICKGSVEVLVLDREDFMDLMTTSPDQGLPTDFLRSIELFRSFPMEKFKEEMDSITTKYFARDSVIVKDSSDSPYFFILKSGRCKVVRQQDVLDVSKASKLPRIPMASKPPTRATPGKNPTSLLEFTKCHTACSKESFILDKLRANKAEREQGRVTEEGII--TDTPSPEAAPLPPIKRKHDYTKDLQGPCYEADIFKRTSEMDLVRKATMEAMQPTKRSSDMTNTVPT------RKALLQIAVLKPGDMFSLESMMPKVANKISAEIIHDTPDPSASVTLISEGAECVMINKRFFLQYAPTTTLIQFKALREQYTSVEQARKEIRNQQAWNLYKSDMVRTLAG 353
[Close]
BLAST of Cyclic nucleotide-binding domain-containing protein vs. Ensembl Nematostella
Match: EDO48124 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RK87])

HSP 1 Score: 65.4698 bits (158), Expect = 4.839e-11
Identity = 55/288 (19.10%), Postives = 131/288 (45.49%), Query Frame = 2 
Query:  743 KSWMPIDLFKYAVRMVQMISFIGKSHTRYPWWKESDNSGYPETT------TNKDKSL--------------TKYSIKPDLRMSLTTNPRFRTKSEIRQIIWFMQTVEAFTDLFPKEMEIELARCIGYEIYEDNRVVILQDNVPQKLYHILMGKLELIYVYKLMQGEVHKSMGFLTHNQTNNLTDFQNNSPSAAYFVARGQLEVLTLHKEDYLHLSSQSN-----LEPI-RTFLKNLIIFKSFDISESTFQKKMIKIQYFRNEKVITADPSNDPFFYVVKSGTVAVTRK 1528
            K+  P++L +  +R+VQM +    S  +Y + KE++ S    T        ++DK +               K  +  +++  L +    RT+ +  ++++ ++++ AF + +P+ ++ +L     YE +   R ++ Q  +PQ  Y +L G   +  + +       +++ FL    +       +++   +  ++R  +E+L + +ED++ +   +       +P  + FL++L   K + I       K     +FR+  V+  D ++  + Y++K G+  V +K
Sbjct:   79 KNLPPVELLRRCIRLVQMFA----SLCQYKFEKETEESDVAHTVFTQYINDDEDKPMDGGLAFDASFYKANRKMRVSAEVKNILQSPQEQRTEQQCAKVLFSLRSIRAFAE-YPQRIQHKLINVGWYESHSSKRAILRQGQIPQAFYFVLSGSAVVTVLGE--HDTFARTVHFLRRGDSFGELAILHDTQRQSTVISREPIELLVISREDFIDIFMLAGGIKNITDPDHQIFLRSLEFLKGWPIELLATNPKKCLFHFFRSGSVLVKDSNHTDWIYIIKWGSCQVLKK 359
[Close]
BLAST of Cyclic nucleotide-binding domain-containing protein vs. Planmine SMEST
Match: SMESG000076149.1 (SMESG000076149.1)

HSP 1 Score: 1327.38 bits (3434), Expect = 0.000e+0
Identity = 677/678 (99.85%), Postives = 678/678 (100.00%), Query Frame = 2 
Query:  209 MNILDQPTGRDSSNEIITNFETENGRTXXXXXXXXXXXXXXDLEDFKETDLIGELKYISTVDTNMIDLDEKTSEADEETQNEIQRNHLKNQYKNIEKLSKSMEQNKAKWKKLEESLNSLTDDDDAHSKIINWRISELESMCSKTVRPEYILHSLNSNLQQYVTSLIPVSREEFETEIRKSWMPIDLFKYAVRMVQMISFIGKSHTRYPWWKESDNSGYPETTTNKDKSLTKYSIKPDLRMSLTTNPRFRTKSEIRQIIWFMQTVEAFTDLFPKEMEIELARCIGYEIYEDNRVVILQDNVPQKLYHILMGKLELIYVYKLMQGEVHKSMGFLTHNQTNNLTDFQNNSPSAAYFVARGQLEVLTLHKEDYLHLSSQSNLEPIRTFLKNLIIFKSFDISESTFQKKMIKIQYFRNEKVITADPSNDPFFYVVKSGTVAVTRKQGVYDTDLSHLWNSNSVYSLGCKREGSHASKMIQINDRQVTLNESKINKNISEINQELEEESSICHKSNQIKPHTSNGPRINRNFDQETLINDFPKSHTMMNITRTKENKQIKSKVTNIPISIAKKATKKERITYIKLDTLKVLDVYXXXXXXXXXXXXXXXSVAKSNFILISEGAEVIMINKRYFLRHIDNNTLLEIRKIVKSYIGEEEAKRLIDDEKKWKAYKKILMQKMIALHSY 2242
            MNILDQPTGRDSSNEIITNFETENGRTSHSAASSIMSSNSNDLEDFKETDLIGELKYISTVDTNMIDLDEKTSEADEETQNEIQRNHLKNQYKNIEKLSKSMEQNKAKWKKLEESLNSLTDDDDAHSKIINWRISELESMCSKTVRPEYILHSLNSNLQQYVTSLIPVSREEFETEIRKSWMPIDLFKYAVRMVQMISFIGKSHTRYPWWKESDNSGYPETTTNKDKSLTKYSIKPDLRMSLTTNPRFRTKSEIRQIIWFMQTVEAFTDLFPKEMEIELARCIGYEIYEDNRVVILQDNVPQKLYHILMGKLELIYVYKLMQGEVHKSMGFLTHNQTNNLTDFQNNSPSAAYFVARGQLEVLTLHKEDYLHLSSQSNLEPIRTFLKNLIIFKSFDISESTFQKKMIKIQYFRNEKVITADPSNDPFFYVVKSGTVAVTRKQGVYDTDLSHLWNSNSVYSLGCKREGSHASKMIQINDRQVTLNESKIN+NISEINQELEEESSICHKSNQIKPHTSNGPRINRNFDQETLINDFPKSHTMMNITRTKENKQIKSKVTNIPISIAKKATKKERITYIKLDTLKVLDVYGLETLEGLETLEKEESVAKSNFILISEGAEVIMINKRYFLRHIDNNTLLEIRKIVKSYIGEEEAKRLIDDEKKWKAYKKILMQKMIALHSY
Sbjct:    1 MNILDQPTGRDSSNEIITNFETENGRTSHSAASSIMSSNSNDLEDFKETDLIGELKYISTVDTNMIDLDEKTSEADEETQNEIQRNHLKNQYKNIEKLSKSMEQNKAKWKKLEESLNSLTDDDDAHSKIINWRISELESMCSKTVRPEYILHSLNSNLQQYVTSLIPVSREEFETEIRKSWMPIDLFKYAVRMVQMISFIGKSHTRYPWWKESDNSGYPETTTNKDKSLTKYSIKPDLRMSLTTNPRFRTKSEIRQIIWFMQTVEAFTDLFPKEMEIELARCIGYEIYEDNRVVILQDNVPQKLYHILMGKLELIYVYKLMQGEVHKSMGFLTHNQTNNLTDFQNNSPSAAYFVARGQLEVLTLHKEDYLHLSSQSNLEPIRTFLKNLIIFKSFDISESTFQKKMIKIQYFRNEKVITADPSNDPFFYVVKSGTVAVTRKQGVYDTDLSHLWNSNSVYSLGCKREGSHASKMIQINDRQVTLNESKINENISEINQELEEESSICHKSNQIKPHTSNGPRINRNFDQETLINDFPKSHTMMNITRTKENKQIKSKVTNIPISIAKKATKKERITYIKLDTLKVLDVYGLETLEGLETLEKEESVAKSNFILISEGAEVIMINKRYFLRHIDNNTLLEIRKIVKSYIGEEEAKRLIDDEKKWKAYKKILMQKMIALHSY 678
[Close]
BLAST of Cyclic nucleotide-binding domain-containing protein vs. Planmine SMEST
Match: SMESG000076149.1 (SMESG000076149.1)

HSP 1 Score: 1323.15 bits (3423), Expect = 0.000e+0
Identity = 676/681 (99.27%), Postives = 678/681 (99.56%), Query Frame = 2 
Query:  209 MNILDQPTGRDSSNEIITNFETENGRTXXXXXXXXXXXXXXDLEDFKETDLIGELKYISTVDTNMIDLDEKTSEADEETQNEIQRNHLKNQYKNIEKLSKSMEQNKAKWKKLEESLNSLTDDDDAHSKIINWRISELESMCSKTVRPEYILHSLNSNLQQYVTSLIPVSREEFETEIRKSWMPIDLFKYAVRMVQMISFIGKSHTRYPWWKESDNSGYPETTTNKDKSLTKYSIKPDLRMSLTTNPRFRTKSEIRQIIWFMQTVEAFTDLFPKEMEIELARCIGYEIYEDNRVVILQDNVPQKLYHILMGKLELIYVYKLMQGEVHKSMGFLTHNQTNNLTDFQNNSPSAAYFVARGQLEVLTLHKEDYLHLSSQSNLEPIRTFLKNLIIFKSFDISESTFQKKMIKIQYFRNEKVITADPSNDPFFYVVKSGTVAVTRKQGVYDTDLSHLWNSNSVYSLGCKREGSHASKMIQINDRQVTLNESKINKNISEINQELEEESSICHKSNQIKPHTSNGPRINRNFDQETLINDFPKSHTMMNITRTKENKQIKSKVTNIPISIAKKATKKERITYIKLDTLKVLDVYXXXXXXXXXXXXXXXSVAKSNFILISEGAEVIMINKRYFLRHIDNNTLLEIRKIVKSYIGEEEAKRLIDDEKKWKAYKKILMQKMIALHSY*FN 2251
            MNILDQPTGRDSSNEIITNFETENGRTSHSAASSIMSSNSNDLEDFKETDLIGELKYISTVDTNMIDLDEKTSEADEETQNEIQRNHLKNQYKNIEKLSKSMEQNKAKWKKLEESLNSLTDDDDAHSKIINWRISELESMCSKTVRPEYILHSLNSNLQQYVTSLIPVSREEFETEIRKSWMPIDLFKYAVRMVQMISFIGKSHTRYPWWKESDNSGYPETTTNKDKSLTKYSIKPDLRMSLTTNPRFRTKSEIRQIIWFMQTVEAFTDLFPKEMEIELARCIGYEIYEDNRVVILQDNVPQKLYHILMGKLELIYVYKLMQGEVHKSMGFLTHNQTNNLTDFQNNSPSAAYFVARGQLEVLTLHKEDYLHLSSQSNLEPIRTFLKNLIIFKSFDISESTFQKKMIKIQYFRNEKVITADPSNDPFFYVVKSGTVAVTRKQGVYDTDLSHLWNSNSVYSLGCKREGSHASKMIQINDRQVTLNESKIN+NISEINQELEEESSICHKSNQIKPHTSNGPRINRNFDQETLINDFPKSHTMMNITRTKENKQIKSKVTNIPISIAKKATKKERITYIKLDTLKVLDVYGLETLEGLETLEKEESVAKSNFILISEGAEVIMINKRYFLRHIDNNTLLEIRKIVKSYIGEEEAKRLIDDEKKWKAYKKILMQKMIALH   +N
Sbjct:    1 MNILDQPTGRDSSNEIITNFETENGRTSHSAASSIMSSNSNDLEDFKETDLIGELKYISTVDTNMIDLDEKTSEADEETQNEIQRNHLKNQYKNIEKLSKSMEQNKAKWKKLEESLNSLTDDDDAHSKIINWRISELESMCSKTVRPEYILHSLNSNLQQYVTSLIPVSREEFETEIRKSWMPIDLFKYAVRMVQMISFIGKSHTRYPWWKESDNSGYPETTTNKDKSLTKYSIKPDLRMSLTTNPRFRTKSEIRQIIWFMQTVEAFTDLFPKEMEIELARCIGYEIYEDNRVVILQDNVPQKLYHILMGKLELIYVYKLMQGEVHKSMGFLTHNQTNNLTDFQNNSPSAAYFVARGQLEVLTLHKEDYLHLSSQSNLEPIRTFLKNLIIFKSFDISESTFQKKMIKIQYFRNEKVITADPSNDPFFYVVKSGTVAVTRKQGVYDTDLSHLWNSNSVYSLGCKREGSHASKMIQINDRQVTLNESKINENISEINQELEEESSICHKSNQIKPHTSNGPRINRNFDQETLINDFPKSHTMMNITRTKENKQIKSKVTNIPISIAKKATKKERITYIKLDTLKVLDVYGLETLEGLETLEKEESVAKSNFILISEGAEVIMINKRYFLRHIDNNTLLEIRKIVKSYIGEEEAKRLIDDEKKWKAYKKILMQKMIALHKDIYN 681
[Close]
BLAST of Cyclic nucleotide-binding domain-containing protein vs. Planmine SMEST
Match: SMESG000069771.1 (SMESG000069771.1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.396e-12
Identity = 57/206 (27.67%), Postives = 101/206 (49.03%), Query Frame = 2 
Query:  932 LTTNPRFRTKSEIRQIIWFM-QTVEAFTDLFPKEMEIELARCIG-YEIYEDNRVVILQDNVPQKLYHILMGKLELIYVYKL-MQGEVH-KSMGFLTHNQTNNLTDFQNNSPSAAYFVARGQLEVLTLHKEDYLH--LSSQSNLEPIRT-FLKNLIIFKSFDISESTFQKKMIKI-QYFRNEKVITADPSNDPFFYVVKSGTVAVTR 1525
            L T+   RT  +IR ++  + +TVEAF++ FP  M+  L  C G YE Y   +V+I Q +  Q  Y I+ GK  +    K    GE + +++ FL    +            +A  +    +E+L++ +ED++   ++  +N EP    FL+N+ I + + I    +    I +  YFR   V+  D SN  + Y++ +G+  V +
Sbjct:  283 LKTHKSLRTPHQIRSVVLALTETVEAFSE-FPISMQEALV-CHGWYEKYNPKQVIIRQGHAAQNFYFIISGKTMVSVARKNNSSGESYGETVAFLKKGNSFGELALMYGGKRSASVICINNVELLSVTREDFIEIFMNLATNTEPEHIKFLRNVTILEGWPIDALPYDDPRICLFTYFRRGTVLCRDSSNLEWIYIICTGSCKVIK 486
[Close]
BLAST of Cyclic nucleotide-binding domain-containing protein vs. Planmine SMEST
Match: SMESG000069771.1 (SMESG000069771.1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.003e-11
Identity = 57/206 (27.67%), Postives = 101/206 (49.03%), Query Frame = 2 
Query:  932 LTTNPRFRTKSEIRQIIWFM-QTVEAFTDLFPKEMEIELARCIG-YEIYEDNRVVILQDNVPQKLYHILMGKLELIYVYKL-MQGEVH-KSMGFLTHNQTNNLTDFQNNSPSAAYFVARGQLEVLTLHKEDYLH--LSSQSNLEPIRT-FLKNLIIFKSFDISESTFQKKMIKI-QYFRNEKVITADPSNDPFFYVVKSGTVAVTR 1525
            L T+   RT  +IR ++  + +TVEAF++ FP  M+  L  C G YE Y   +V+I Q +  Q  Y I+ GK  +    K    GE + +++ FL    +            +A  +    +E+L++ +ED++   ++  +N EP    FL+N+ I + + I    +    I +  YFR   V+  D SN  + Y++ +G+  V +
Sbjct:  283 LKTHKSLRTPHQIRSVVLALTETVEAFSE-FPISMQEALV-CHGWYEKYNPKQVIIRQGHAAQNFYFIISGKTMVSVARKNNSSGESYGETVAFLKKGNSFGELALMYGGKRSASVICINNVELLSVTREDFIEIFMNLATNTEPEHIKFLRNVTILEGWPIDALPYDDPRICLFTYFRRGTVLCRDSSNLEWIYIICTGSCKVIK 486
[Close]
BLAST of Cyclic nucleotide-binding domain-containing protein vs. Planmine SMEST
Match: SMESG000046966.1 (SMESG000046966.1)

HSP 1 Score: 65.0846 bits (157), Expect = 1.262e-10
Identity = 47/214 (21.96%), Postives = 107/214 (50.00%), Query Frame = 2 
Query:  908 IKPDLRMSLTTNPRFRTKSEIRQIIWFMQTVEAFTDLFPKEMEIELARCIGYEIYEDNRVVILQDNVPQKLYHILMGKLELIYVYKLMQGEVHKSMGFLTHNQTNNLTDFQNNSPSAAYFVARGQLEVLTLHKEDYLHL---SSQSNLEPIR-TFLKNLIIFKSFDISESTFQKKMIKIQYFRNEKVITADPSNDPFFYVVKSGTVAVTRKQGV 1537
            + P+++  LT +P+ RT+ +I  +++ +  + AF + +P  ++ +L     +   +  RV+I Q +V +  Y I+ G   +        G+V +++  L+   +       ++S   A  V++  +++L + + D+ ++    S+ N  P   +F+K++ IF   D  +   Q +     +++N  VI+A+     + Y+VKSG+  V ++  V
Sbjct:  220 LTPEMKKILTMHPKQRTEEQILTVMYGLSALSAFNE-YPVHLKKKLCTVAYFRKIDPRRVIIRQGHVAEYFYFIISGTAIVTITSNDDYGQV-RTVNSLSKGCSFGELALLHHSTRTASVVSKSSMQLLAIERNDFFYIFMYMSEFNKYPEHVSFIKDIPIFSHLDFDQLVKQPEASLCHFYKNLIVISANDIESEWVYIVKSGSCTVLKELQV 431
The following BLAST results are available for this feature:
BLAST of Cyclic nucleotide-binding domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Cyclic nucleotide-binding domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Cyclic nucleotide-binding domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Cyclic nucleotide-binding domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Cyclic nucleotide-binding domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Cyclic nucleotide-binding domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Cyclic nucleotide-binding domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Cyclic nucleotide-binding domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
V4BAB93.551e-5928.16Cyclic nucleotide-binding domain-containing protei... [more]
A0A210PT207.121e-5727.86Cyclic nucleotide-binding domain-containing protei... [more]
A0A2T7PN891.995e-5027.65Cyclic nucleotide-binding domain-containing protei... [more]
A0A267ESA21.633e-4529.77Cyclic nucleotide-binding domain-containing protei... [more]
A0A267DFI22.813e-4529.77Cyclic nucleotide-binding domain-containing protei... [more]
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BLAST of Cyclic nucleotide-binding domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Cyclic nucleotide-binding domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Cyclic nucleotide-binding domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Cyclic nucleotide-binding domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 2
Match NameE-valueIdentityDescription
EDO404887.571e-2423.94Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO481244.839e-1119.10Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of Cyclic nucleotide-binding domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Cyclic nucleotide-binding domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000076149.10.000e+099.85SMESG000076149.1[more]
SMESG000076149.10.000e+099.27SMESG000076149.1[more]
SMESG000069771.19.396e-1227.67SMESG000069771.1[more]
SMESG000069771.11.003e-1127.67SMESG000069771.1[more]
SMESG000046966.11.262e-1021.96SMESG000046966.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30031605 ID=SMED30031605|Name=Cyclic nucleotide-binding domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=2264bp
AAGAAACAATAGTAAAAGGTCTGAATAGTAGAAGGCTCTGTGTGGTATAT
TCTGTGACAGCAACAACTATGGCTGTTGCTGGCTTAGTCTTGCGTATATA
ATTGTAAATCAGGTTTTAAATTAGTATTTAATTATTATGCTTGTTAATTA
CTTTCAATTAATTATTATTTGAATCTCTACCATAACTCTACTTGGAGTTT
TATCACCAATGAACATTTTGGATCAACCAACAGGACGGGATTCTTCCAAT
GAAATTATTACTAACTTTGAGACGGAAAATGGAAGAACTTCTCATTCAGC
GGCGAGCAGCATAATGTCATCAAATAGCAATGATTTGGAGGATTTTAAAG
AAACGGATTTGATTGGAGAATTAAAATATATTTCCACAGTAGATACAAAT
ATGATTGATCTCGACGAAAAGACATCTGAGGCTGACGAAGAAACACAAAA
TGAGATCCAAAGAAATCATTTAAAAAATCAATATAAGAATATTGAAAAAT
TATCTAAATCAATGGAACAAAATAAAGCAAAGTGGAAAAAATTAGAGGAA
TCTTTGAATTCTTTGACAGATGATGATGATGCGCATTCTAAAATAATTAA
TTGGAGAATTAGTGAGCTGGAGTCAATGTGCAGCAAAACGGTTCGTCCAG
AATATATTCTACATTCTCTAAACTCCAATCTTCAACAATATGTAACGTCA
TTAATTCCGGTTAGTAGAGAAGAATTCGAAACAGAAATAAGAAAGTCTTG
GATGCCAATAGATTTGTTTAAATATGCAGTTAGAATGGTTCAAATGATTT
CTTTCATAGGCAAGTCTCATACGAGATATCCTTGGTGGAAAGAATCAGAT
AATTCAGGCTATCCAGAAACCACTACTAACAAAGATAAATCCTTGACAAA
ATATTCTATTAAGCCAGACCTTCGAATGAGCTTGACAACAAATCCCAGAT
TTAGAACCAAATCAGAAATCCGACAAATCATTTGGTTCATGCAAACCGTA
GAGGCATTCACAGATTTATTCCCAAAGGAAATGGAGATCGAGCTCGCGAG
ATGTATCGGTTATGAAATATATGAGGATAACAGAGTGGTTATATTACAAG
ATAATGTTCCACAAAAGCTCTATCACATCTTGATGGGGAAATTGGAACTG
ATATATGTTTATAAACTAATGCAAGGGGAAGTTCACAAGTCAATGGGATT
TCTGACACATAATCAGACGAACAATCTAACCGACTTCCAGAATAATTCAC
CTTCTGCGGCATACTTCGTAGCTAGGGGTCAACTTGAAGTGTTGACTCTC
CATAAAGAAGACTATTTGCATTTAAGCAGTCAATCAAATTTAGAACCTAT
TCGAACCTTTTTAAAAAATCTCATTATTTTCAAAAGTTTTGATATTTCCG
AGTCAACTTTTCAAAAGAAAATGATTAAGATCCAATATTTCAGAAATGAA
AAAGTTATCACCGCAGATCCATCGAATGATCCATTTTTCTATGTTGTTAA
ATCTGGGACCGTTGCAGTTACCCGGAAGCAAGGAGTTTATGACACTGACT
TGTCTCACCTATGGAACTCAAATAGCGTGTACAGTTTAGGGTGCAAAAGA
GAAGGAAGTCACGCATCAAAAATGATACAAATAAATGATCGGCAAGTTAC
ACTCAACGAATCAAAAATAAATAAAAATATTTCCGAAATAAATCAAGAGT
TGGAAGAAGAATCTTCTATTTGTCACAAATCAAATCAAATAAAACCACAC
ACATCAAACGGGCCCCGGATAAATCGCAATTTTGATCAGGAAACGTTGAT
TAATGACTTTCCAAAAAGTCATACTATGATGAATATAACAAGAACAAAAG
AAAATAAACAAATTAAGTCAAAAGTCACAAACATTCCAATTTCGATAGCG
AAGAAGGCAACTAAAAAAGAAAGAATAACATATATTAAATTAGACACTTT
GAAAGTGTTAGATGTTTATGGACTGGAAACATTAGAAGGACTGGAAACAT
TAGAAAAAGAAGAATCAGTTGCTAAATCCAATTTTATTCTTATAAGTGAA
GGAGCAGAAGTAATAATGATAAACAAAAGATATTTTCTTCGCCATATTGA
TAATAATACCCTTTTGGAAATTCGGAAGATAGTAAAATCTTATATCGGCG
AGGAAGAGGCAAAGCGTTTAATTGACGATGAAAAAAAATGGAAAGCATAC
AAGAAAATTCTGATGCAAAAAATGATCGCTTTACACAGTTACTAATTTAA
TAATTTTATGTTTT
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protein sequence of SMED30031605-orf-1

>SMED30031605-orf-1 ID=SMED30031605-orf-1|Name=SMED30031605-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=679bp
MNILDQPTGRDSSNEIITNFETENGRTSHSAASSIMSSNSNDLEDFKETD
LIGELKYISTVDTNMIDLDEKTSEADEETQNEIQRNHLKNQYKNIEKLSK
SMEQNKAKWKKLEESLNSLTDDDDAHSKIINWRISELESMCSKTVRPEYI
LHSLNSNLQQYVTSLIPVSREEFETEIRKSWMPIDLFKYAVRMVQMISFI
GKSHTRYPWWKESDNSGYPETTTNKDKSLTKYSIKPDLRMSLTTNPRFRT
KSEIRQIIWFMQTVEAFTDLFPKEMEIELARCIGYEIYEDNRVVILQDNV
PQKLYHILMGKLELIYVYKLMQGEVHKSMGFLTHNQTNNLTDFQNNSPSA
AYFVARGQLEVLTLHKEDYLHLSSQSNLEPIRTFLKNLIIFKSFDISEST
FQKKMIKIQYFRNEKVITADPSNDPFFYVVKSGTVAVTRKQGVYDTDLSH
LWNSNSVYSLGCKREGSHASKMIQINDRQVTLNESKINKNISEINQELEE
ESSICHKSNQIKPHTSNGPRINRNFDQETLINDFPKSHTMMNITRTKENK
QIKSKVTNIPISIAKKATKKERITYIKLDTLKVLDVYGLETLEGLETLEK
EESVAKSNFILISEGAEVIMINKRYFLRHIDNNTLLEIRKIVKSYIGEEE
AKRLIDDEKKWKAYKKILMQKMIALHSY*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000034epidermis
PLANA:0000054dorsal region of the epidermis
PLANA:0000099neuron
PLANA:0002032epidermal cell
Vocabulary: INTERPRO
TermDefinition
IPR014710RmlC-like_jellyroll
IPR000595cNMP-bd_dom
IPR018490cNMP-bd-like