Ribonucloprotein

Overview
NameRibonucloprotein
Smed IDSMED30031567
Length (bp)559
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Ribonucloprotein (SMED30031567) t-SNE clustered cells

Violin plots show distribution of expression levels for Ribonucloprotein (SMED30031567) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Ribonucloprotein (SMED30031567) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Ribonucloprotein (SMED30031567) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30031567

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 5

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30031567SMESG000040544.1 SMESG000027686.1 SmedASXL_006605SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
pharynxSMED30031567SMESG000040544.1 SMESG000027686.1 dd_Smed_v4_3155_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30031567SMESG000040544.1 SMESG000027686.1 dd_Smed_v4_3155_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30031567SMESG000040544.1 SMESG000027686.1 dd_Smed_v4_3155_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30031567SMESG000040544.1 SMESG000027686.1 dd_Smed_v4_3155_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Ribonucloprotein vs. Ensembl Human
Match: NHP2 (NHP2 ribonucleoprotein [Source:HGNC Symbol;Acc:HGNC:14377])

HSP 1 Score: 99.3673 bits (246), Expect = 2.982e-26
Identity = 44/120 (36.67%), Postives = 76/120 (63.33%), Query Frame = 2 
Query:  167 ISKPMAPEKLGKKLMKLLTSGSKNKKLILGVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCRRDVGIACGSKKSIAIVMIECDDAYASKFNKLSKKVLNLPQPF 526
            I++P+A  +L +KL K +    K K++  GVK V K + K  KGI+++AGD  PI+V  H+P +CE  N+PY ++P + D+G A GSK+   ++M++  + Y   +++  ++V +LP P 
Sbjct:   34 IAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGSKRPTCVIMVKPHEEYQEAYDECLEEVQSLPLPL 153
[Close]
BLAST of Ribonucloprotein vs. Ensembl Human
Match: NHP2 (NHP2 ribonucleoprotein [Source:HGNC Symbol;Acc:HGNC:14377])

HSP 1 Score: 72.4034 bits (176), Expect = 5.097e-16
Identity = 32/78 (41.03%), Postives = 51/78 (65.38%), Query Frame = 2 
Query:  167 ISKPMAPEKLGKKLMKLLTSGSKNKKLILGVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCR 400
            I++P+A  +L +KL K +    K K++  GVK V K + K  KGI+++AGD  PI+V  H+P +CE  N+PY ++P +
Sbjct:   34 IAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSK 111
[Close]
BLAST of Ribonucloprotein vs. Ensembl Human
Match: NHP2 (NHP2 ribonucleoprotein [Source:HGNC Symbol;Acc:HGNC:14377])

HSP 1 Score: 72.0182 bits (175), Expect = 7.364e-16
Identity = 32/78 (41.03%), Postives = 51/78 (65.38%), Query Frame = 2 
Query:  167 ISKPMAPEKLGKKLMKLLTSGSKNKKLILGVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCR 400
            I++P+A  +L +KL K +    K K++  GVK V K + K  KGI+++AGD  PI+V  H+P +CE  N+PY ++P +
Sbjct:   34 IAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSK 111
[Close]
BLAST of Ribonucloprotein vs. Ensembl Human
Match: SNU13 (small nuclear ribonucleoprotein 13 [Source:HGNC Symbol;Acc:HGNC:7819])

HSP 1 Score: 65.4698 bits (158), Expect = 1.635e-13
Identity = 28/88 (31.82%), Postives = 49/88 (55.68%), Query Frame = 2 
Query:  176 PMAPEKLGKKLMKLLTSGSKNKKLILGVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCRRDVGIACGSKKSI 439
            P+A   L KKL+ L+      K+L  G     K + +     +++A D  P+++++H+P LCE  NVPY F+  ++ +G ACG  + +
Sbjct:   12 PLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPV 99
[Close]
BLAST of Ribonucloprotein vs. Ensembl Human
Match: SNU13 (small nuclear ribonucleoprotein 13 [Source:HGNC Symbol;Acc:HGNC:7819])

HSP 1 Score: 65.4698 bits (158), Expect = 1.635e-13
Identity = 28/88 (31.82%), Postives = 49/88 (55.68%), Query Frame = 2 
Query:  176 PMAPEKLGKKLMKLLTSGSKNKKLILGVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCRRDVGIACGSKKSI 439
            P+A   L KKL+ L+      K+L  G     K + +     +++A D  P+++++H+P LCE  NVPY F+  ++ +G ACG  + +
Sbjct:   12 PLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPV 99
[Close]
BLAST of Ribonucloprotein vs. Ensembl Celegans
Match: Y48A6B.3 (Putative H/ACA ribonucleoprotein complex subunit 2-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q9XXD4])

HSP 1 Score: 88.9669 bits (219), Expect = 1.327e-22
Identity = 41/117 (35.04%), Postives = 74/117 (63.25%), Query Frame = 2 
Query:  167 ISKPMAPEKLGKKLMKLLTSGSK-NKKLILGVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCRRDVGIACGSKKSIAIVMIECDDAYASKFNKLSKKVLNL 514
            I++P+A  KL KK+ KL+   S  +K L  G+K V K +R+  KGI I+AG+V+PIDV  HIP +CE   +PY ++P R  +G+A G ++   ++ ++    +   ++++++ + +L
Sbjct:   42 IAQPLANRKLAKKVYKLIKKASAGDKTLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAVGHRRPSILIFVKPSGDFKELYDEVAEALRHL 158
[Close]
BLAST of Ribonucloprotein vs. Ensembl Celegans
Match: rpl-7A (60S ribosomal protein L7a [Source:UniProtKB/Swiss-Prot;Acc:Q966C6])

HSP 1 Score: 62.7734 bits (151), Expect = 4.499e-12
Identity = 27/86 (31.40%), Postives = 49/86 (56.98%), Query Frame = 2 
Query:  254 GVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCRRDVGIACGSKKSIAIVMIECDDAYASKFNKLSKKVLN 511
            GV ++ + +  +R  +V+IA DV P+++V+H+P LC   NVPY  +  +  +G     K + A+ +++ +    S  NKL + V N
Sbjct:  120 GVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVNPEDKSALNKLVETVNN 205
[Close]
BLAST of Ribonucloprotein vs. Ensembl Celegans
Match: rpl-7A (60S ribosomal protein L7a [Source:UniProtKB/Swiss-Prot;Acc:Q966C6])

HSP 1 Score: 62.7734 bits (151), Expect = 6.528e-12
Identity = 27/86 (31.40%), Postives = 49/86 (56.98%), Query Frame = 2 
Query:  254 GVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCRRDVGIACGSKKSIAIVMIECDDAYASKFNKLSKKVLN 511
            GV ++ + +  +R  +V+IA DV P+++V+H+P LC   NVPY  +  +  +G     K + A+ +++ +    S  NKL + V N
Sbjct:  140 GVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVNPEDKSALNKLVETVNN 225
[Close]
BLAST of Ribonucloprotein vs. Ensembl Celegans
Match: M28.5 (NHP2-like protein 1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q21568])

HSP 1 Score: 51.6026 bits (122), Expect = 1.258e-8
Identity = 29/83 (34.94%), Postives = 47/83 (56.63%), Query Frame = 2 
Query:  176 PMAPEKLGKKLMKLLTSGSKNKKLILGVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCRRDVGIACG 424
            P+A   L +KLM L+      K+L  G     K + +    I+++A D  P+++++H+P LCE  NVPY F+  +  +G ACG
Sbjct:   12 PLADTNLSQKLMDLVQQAMNYKQLKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALGRACG 94
[Close]
BLAST of Ribonucloprotein vs. Ensembl Fly
Match: NHP2 (gene:FBgn0029148 transcript:FBtr0333076)

HSP 1 Score: 101.679 bits (252), Expect = 2.506e-27
Identity = 54/144 (37.50%), Postives = 85/144 (59.03%), Query Frame = 2 
Query:   95 DLTKEEEEYYDSLTYPIKASFATVISKPMAPEKLGKKLMKLLTSGSKNKKLIL-GVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCRRDVGIACGSKKSIAIVMIECDDAYASKFNKLSKKV--LNLP 517
            D+T +EEE YD      K  F   I+KPMA +KL KK  KL+    K+K  +  G+K V   +RK   GI I AGDVTP+D++ H+P +CE   +PY + P R D+G A G K+    +++  ++ Y   ++++ +++  LN+P
Sbjct:   21 DVTIKEEESYDD-----KLIFVNAIAKPMAGKKLAKKCYKLVKKAMKHKTFLRNGLKDVQTRLRKGETGICIFAGDVTPVDIMCHLPAVCEEKGIPYTYTPSRADLGAAMGVKRGTVALLVRQNEEYKDLYDEVKEELSALNIP 159
[Close]
BLAST of Ribonucloprotein vs. Ensembl Fly
Match: NHP2 (gene:FBgn0029148 transcript:FBtr0075698)

HSP 1 Score: 101.679 bits (252), Expect = 2.506e-27
Identity = 54/144 (37.50%), Postives = 85/144 (59.03%), Query Frame = 2 
Query:   95 DLTKEEEEYYDSLTYPIKASFATVISKPMAPEKLGKKLMKLLTSGSKNKKLIL-GVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCRRDVGIACGSKKSIAIVMIECDDAYASKFNKLSKKV--LNLP 517
            D+T +EEE YD      K  F   I+KPMA +KL KK  KL+    K+K  +  G+K V   +RK   GI I AGDVTP+D++ H+P +CE   +PY + P R D+G A G K+    +++  ++ Y   ++++ +++  LN+P
Sbjct:   21 DVTIKEEESYDD-----KLIFVNAIAKPMAGKKLAKKCYKLVKKAMKHKTFLRNGLKDVQTRLRKGETGICIFAGDVTPVDIMCHLPAVCEEKGIPYTYTPSRADLGAAMGVKRGTVALLVRQNEEYKDLYDEVKEELSALNIP 159
[Close]
BLAST of Ribonucloprotein vs. Ensembl Fly
Match: hoip (gene:FBgn0286786 transcript:FBtr0079846)

HSP 1 Score: 71.2478 bits (173), Expect = 5.930e-16
Identity = 32/88 (36.36%), Postives = 50/88 (56.82%), Query Frame = 2 
Query:  176 PMAPEKLGKKLMKLLTSGSKNKKLILGVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCRRDVGIACGSKKSI 439
            P+A  +L  K+M LL       +L  G     K + +    IV++AGD  PI++++H+P LCE  NVPY F+  ++ +G ACG  + I
Sbjct:   11 PLADAQLTAKIMNLLQQALNYNQLRKGANEATKTLNRGLADIVVLAGDAEPIEILLHLPLLCEDKNVPYVFVRSKQALGRACGVSRPI 98
[Close]
BLAST of Ribonucloprotein vs. Ensembl Fly
Match: hoip (gene:FBgn0286786 transcript:FBtr0335494)

HSP 1 Score: 71.2478 bits (173), Expect = 5.930e-16
Identity = 32/88 (36.36%), Postives = 50/88 (56.82%), Query Frame = 2 
Query:  176 PMAPEKLGKKLMKLLTSGSKNKKLILGVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCRRDVGIACGSKKSI 439
            P+A  +L  K+M LL       +L  G     K + +    IV++AGD  PI++++H+P LCE  NVPY F+  ++ +G ACG  + I
Sbjct:   11 PLADAQLTAKIMNLLQQALNYNQLRKGANEATKTLNRGLADIVVLAGDAEPIEILLHLPLLCEDKNVPYVFVRSKQALGRACGVSRPI 98
[Close]
BLAST of Ribonucloprotein vs. Ensembl Fly
Match: RpL7A (gene:FBgn0014026 transcript:FBtr0345293)

HSP 1 Score: 51.2174 bits (121), Expect = 1.020e-7
Identity = 24/80 (30.00%), Postives = 42/80 (52.50%), Query Frame = 2 
Query:  254 GVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCRRDVGIACGSKKSIAIVMIECDDAYASKFNKL 493
            G  +V K I +K+  +V+IA DV P+++V+ +P LC    VPYC +  +  +G     K    + +   D+   + F K+
Sbjct:  144 GTNTVTKLIEQKKAQLVVIAHDVDPLELVLFLPALCRKMGVPYCIVKGKARLGRLVRRKTCTTLALTTVDNNDKANFGKV 223
[Close]
BLAST of Ribonucloprotein vs. Ensembl Zebrafish
Match: nhp2 (NHP2 ribonucleoprotein homolog (yeast) [Source:NCBI gene;Acc:100003787])

HSP 1 Score: 93.2041 bits (230), Expect = 4.351e-24
Identity = 48/120 (40.00%), Postives = 75/120 (62.50%), Query Frame = 2 
Query:  167 ISKPMAPEKLGKKLMKLLTSGSKNKKLILGVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCRRDVGIACGSKKSIAIVMIECDDAYASKFNKLSKKVLNLPQPF 526
            I+ P+A  KL KKL K +   +K K++  GVK V K I K   GIV+ AGD  PIDV  H+P +CE  ++PY ++P + D+G + GSK+   ++MI+  D Y   +++  ++V +LP+P 
Sbjct:   31 IANPLASRKLSKKLYKCVKKAAKVKQIRRGVKEVQKFINKGETGIVVFAGDTLPIDVYCHLPIMCEDRSLPYAYVPSKVDLGSSAGSKRPTCVIMIKPHDEYKEAYDECVEEVTSLPKPI 150
[Close]
BLAST of Ribonucloprotein vs. Ensembl Zebrafish
Match: snu13b (SNU13 homolog, small nuclear ribonucleoprotein b (U4/U6.U5) [Source:ZFIN;Acc:ZDB-GENE-030131-9670])

HSP 1 Score: 65.4698 bits (158), Expect = 9.766e-14
Identity = 27/83 (32.53%), Postives = 47/83 (56.63%), Query Frame = 2 
Query:  176 PMAPEKLGKKLMKLLTSGSKNKKLILGVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCRRDVGIACG 424
            P+A   L K ++ L+   S  K+L  G     K + +     +++A D  P+++++H+P LCE  NVPY F+  ++ +G ACG
Sbjct:   12 PLADATLSKTILDLVQQASNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACG 94
[Close]
BLAST of Ribonucloprotein vs. Ensembl Zebrafish
Match: snu13a (SNU13 homolog, small nuclear ribonucleoprotein a (U4/U6.U5) [Source:ZFIN;Acc:ZDB-GENE-040426-879])

HSP 1 Score: 64.6994 bits (156), Expect = 2.388e-13
Identity = 26/88 (29.55%), Postives = 49/88 (55.68%), Query Frame = 2 
Query:  176 PMAPEKLGKKLMKLLTSGSKNKKLILGVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCRRDVGIACGSKKSI 439
            P+A   L K ++ L+   +  K+L  G     K + +     +++A D  P+++++H+P LCE  NVPY F+  ++ +G ACG  + +
Sbjct:   12 PLADATLSKTILDLVQQAANYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPV 99
[Close]
BLAST of Ribonucloprotein vs. Ensembl Zebrafish
Match: rpl7a (ribosomal protein L7a [Source:ZFIN;Acc:ZDB-GENE-031001-9])

HSP 1 Score: 47.3654 bits (111), Expect = 2.125e-6
Identity = 27/79 (34.18%), Postives = 40/79 (50.63%), Query Frame = 2 
Query:  245 LILGVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCRRDVGIACGSK--KSIAIVMIECDDAYA 475
            L  GV +V   +  K+  +V+IA DV PI++V+ +P LC    VPYC +  +  +G     K   SIA      +D  A
Sbjct:  136 LRAGVNTVTTLVESKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIVKGKARLGRLVHRKTCTSIAFTQTNPEDKAA 214
[Close]
BLAST of Ribonucloprotein vs. Ensembl Zebrafish
Match: rpl7a (ribosomal protein L7a [Source:ZFIN;Acc:ZDB-GENE-031001-9])

HSP 1 Score: 47.3654 bits (111), Expect = 2.229e-6
Identity = 27/79 (34.18%), Postives = 40/79 (50.63%), Query Frame = 2 
Query:  245 LILGVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCRRDVGIACGSK--KSIAIVMIECDDAYA 475
            L  GV +V   +  K+  +V+IA DV PI++V+ +P LC    VPYC +  +  +G     K   SIA      +D  A
Sbjct:  136 LRAGVNTVTTLVESKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIVKGKARLGRLVHRKTCTSIAFTQTNPEDKAA 214
[Close]
BLAST of Ribonucloprotein vs. Ensembl Xenopus
Match: nhp2 (NHP2 ribonucleoprotein [Source:NCBI gene;Acc:394586])

HSP 1 Score: 99.3673 bits (246), Expect = 2.252e-26
Identity = 52/135 (38.52%), Postives = 78/135 (57.78%), Query Frame = 2 
Query:  122 YDSLTYPIKASFATVISKPMAPEKLGKKLMKLLTSGSKNKKLILGVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCRRDVGIACGSKKSIAIVMIECDDAYASKFNKLSKKVLNLPQPF 526
            YD L      ++   I+KP+A  KL KKL K +    K K +  GVK V K I K  KGIV++AGD  PI+V  HIP +CE   +PY ++P + D+G A GSK+   +++I+  + Y   +++  + V  LP P+
Sbjct:   20 YDELL-----AYLNPIAKPLAGRKLTKKLYKCVKKAIKQKNIRRGVKEVQKFINKGEKGIVVMAGDTLPIEVYCHIPVMCEDRGIPYSYVPSKSDLGAAAGSKRPTCVILIKPHEDYQEAYDECLEDVQALPLPY 149
[Close]
BLAST of Ribonucloprotein vs. Ensembl Xenopus
Match: snu13 (small nuclear ribonucleoprotein 13 [Source:NCBI gene;Acc:394590])

HSP 1 Score: 65.4698 bits (158), Expect = 1.498e-13
Identity = 27/88 (30.68%), Postives = 50/88 (56.82%), Query Frame = 2 
Query:  176 PMAPEKLGKKLMKLLTSGSKNKKLILGVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCRRDVGIACGSKKSI 439
            P+A  +L K L+ L+   +  K+L  G     K + +     +++A D  P+++++H+P LCE  NVPY F+  ++ +G ACG  + +
Sbjct:   12 PLADAQLTKTLLDLVQQAANYKQLRKGANEATKTLNRGIAEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPV 99
[Close]
BLAST of Ribonucloprotein vs. Ensembl Xenopus
Match: rpl7a (ribosomal protein L7a [Source:NCBI gene;Acc:447981])

HSP 1 Score: 47.7506 bits (112), Expect = 2.443e-6
Identity = 25/76 (32.89%), Postives = 41/76 (53.95%), Query Frame = 2 
Query:  245 LILGVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCRRDVGIACGSK--KSIAIVMIECDD 466
            L  GV +V   +  K+  +V+IA DV PI++V+ +P LC    VPYC +  +  +G     K   S+A+  +  +D
Sbjct:  143 LRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIVKGKARLGRLVHRKTCTSVALTQVNPED 218
[Close]
BLAST of Ribonucloprotein vs. Ensembl Mouse
Match: Nhp2 (NHP2 ribonucleoprotein [Source:MGI Symbol;Acc:MGI:1098547])

HSP 1 Score: 101.679 bits (252), Expect = 2.562e-27
Identity = 46/120 (38.33%), Postives = 75/120 (62.50%), Query Frame = 2 
Query:  167 ISKPMAPEKLGKKLMKLLTSGSKNKKLILGVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCRRDVGIACGSKKSIAIVMIECDDAYASKFNKLSKKVLNLPQPF 526
            I++P+A  +L +KL K +    K K++  GVK V K + K  KGI+++AGD  PI+V  H+P LCE  N+PY ++P + D+G A GSK+   ++M++  + Y   ++K  ++V  LP P 
Sbjct:   34 IAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVLCEDQNLPYVYIPSKTDLGAATGSKRPTCVIMVKPHEEYQETYDKCLEEVQALPTPL 153
[Close]
BLAST of Ribonucloprotein vs. Ensembl Mouse
Match: Snu13 (SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5) [Source:MGI Symbol;Acc:MGI:893586])

HSP 1 Score: 65.4698 bits (158), Expect = 1.123e-13
Identity = 28/88 (31.82%), Postives = 49/88 (55.68%), Query Frame = 2 
Query:  176 PMAPEKLGKKLMKLLTSGSKNKKLILGVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCRRDVGIACGSKKSI 439
            P+A   L KKL+ L+      K+L  G     K + +     +++A D  P+++++H+P LCE  NVPY F+  ++ +G ACG  + +
Sbjct:   12 PLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPV 99
[Close]
BLAST of Ribonucloprotein vs. Ensembl Mouse
Match: Rpl7a (ribosomal protein L7A [Source:MGI Symbol;Acc:MGI:1353472])

HSP 1 Score: 48.1358 bits (113), Expect = 1.612e-6
Identity = 24/76 (31.58%), Postives = 40/76 (52.63%), Query Frame = 2 
Query:  245 LILGVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCRRDVGIACGSK--KSIAIVMIECDD 466
            L  GV +V   +  K+  +V+IA DV PI++V+ +P LC    VPYC +  +  +G     K   ++A   +  +D
Sbjct:  136 LRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGHLVHRKTCTTVAFTQVNSED 211
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BLAST of Ribonucloprotein vs. UniProt/SwissProt
Match: sp|Q8I7X7|NHP2_BRABE (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Branchiostoma belcheri OX=7741 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.194e-29
Identity = 51/130 (39.23%), Postives = 83/130 (63.85%), Query Frame = 2 
Query:  137 YPIKASFATVISKPMAPEKLGKKLMKLLTSGSKNKKLILGVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCRRDVGIACGSKKSIAIVMIECDDAYASKFNKLSKKVLNLPQPF 526
            Y + A+    I+ P+A  KL K+L K +   SK K +  G++ V K I+K  +GIV+IAGD TPI+V  H+P +CE A +PYC++P ++D+G A GSK+    V+++ +++Y S +++    V  LP+P 
Sbjct:   30 YEVLATRVNPIASPLAARKLTKRLYKTVKKASKEKNIRKGIRDVQKFIKKGERGIVLIAGDTTPIEVYCHLPVVCEDAKIPYCYVPAKQDLGEAAGSKRPTCCVLLKPNESYQSSYDECLTDVTTLPRPI 159
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BLAST of Ribonucloprotein vs. UniProt/SwissProt
Match: sp|Q6XIP0|NHP2_DROYA (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Drosophila yakuba OX=7245 GN=NHP2 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.028e-27
Identity = 55/144 (38.19%), Postives = 85/144 (59.03%), Query Frame = 2 
Query:   95 DLTKEEEEYYDSLTYPIKASFATVISKPMAPEKLGKKLMKLLTSGSKNKKLIL-GVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCRRDVGIACGSKKSIAIVMIECDDAYASKFNKLSKKV--LNLP 517
            D+T +EEE YD      K  F   I+KPMA +KL KK  KL+    K+K  +  G+K V   +RK   GI I AGDVTP+D++ H+P +CE   +PY + P R D+G A G K+    +++  +D Y   ++++ +++  LN+P
Sbjct:   21 DVTIKEEESYDD-----KLIFVNAIAKPMAGKKLAKKCYKLVKKAMKHKTFLRNGLKDVQTRLRKGETGICIFAGDVTPVDIMCHLPAVCEEKGIPYAYTPSRADLGAAMGVKRGTVALLVRQNDEYKDLYDEVKEELSALNIP 159
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BLAST of Ribonucloprotein vs. UniProt/SwissProt
Match: sp|P32495|NHP2_YEAST (H/ACA ribonucleoprotein complex subunit NHP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=NHP2 PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 1.276e-26
Identity = 58/152 (38.16%), Postives = 88/152 (57.89%), Query Frame = 2 
Query:  101 TKEEEEYYDSLT---YPIKASFATVISKPMAPEKLGKKLMKLLTSGSKNKKLILGVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCRRDVGIACGSKKSIAIVMI-----------ECDDAYASKFNKLSKKVLNL 514
             KE +E  +S T   Y  +       +KP+A +KL KK++K +   SK K +  GVK V KA+RK  KG+V+IAGD++P DV+ HIP LCE  +VPY F+P ++D+G A  +K+  ++V I             ++ Y   FN++ K+V  L
Sbjct:    5 NKEHKESKESKTVDNYEARMPAVLPFAKPLASKKLNKKVLKTVKKASKAKNVKRGVKEVVKALRKGEKGLVVIAGDISPADVISHIPVLCEDHSVPYIFIPSKQDLGAAGATKRPTSVVFIVPGSNKKKDGKNKEEEYKESFNEVVKEVQAL 156
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BLAST of Ribonucloprotein vs. UniProt/SwissProt
Match: sp|Q9CRB2|NHP2_MOUSE (H/ACA ribonucleoprotein complex subunit 2 OS=Mus musculus OX=10090 GN=Nhp2 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.792e-26
Identity = 46/120 (38.33%), Postives = 75/120 (62.50%), Query Frame = 2 
Query:  167 ISKPMAPEKLGKKLMKLLTSGSKNKKLILGVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCRRDVGIACGSKKSIAIVMIECDDAYASKFNKLSKKVLNLPQPF 526
            I++P+A  +L +KL K +    K K++  GVK V K + K  KGI+++AGD  PI+V  H+P LCE  N+PY ++P + D+G A GSK+   ++M++  + Y   ++K  ++V  LP P 
Sbjct:   34 IAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVLCEDQNLPYVYIPSKTDLGAATGSKRPTCVIMVKPHEEYQETYDKCLEEVQALPTPL 153
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BLAST of Ribonucloprotein vs. UniProt/SwissProt
Match: sp|Q9V3U2|NHP2_DROME (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Drosophila melanogaster OX=7227 GN=NHP2 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.512e-26
Identity = 54/144 (37.50%), Postives = 85/144 (59.03%), Query Frame = 2 
Query:   95 DLTKEEEEYYDSLTYPIKASFATVISKPMAPEKLGKKLMKLLTSGSKNKKLIL-GVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCRRDVGIACGSKKSIAIVMIECDDAYASKFNKLSKKV--LNLP 517
            D+T +EEE YD      K  F   I+KPMA +KL KK  KL+    K+K  +  G+K V   +RK   GI I AGDVTP+D++ H+P +CE   +PY + P R D+G A G K+    +++  ++ Y   ++++ +++  LN+P
Sbjct:   21 DVTIKEEESYDD-----KLIFVNAIAKPMAGKKLAKKCYKLVKKAMKHKTFLRNGLKDVQTRLRKGETGICIFAGDVTPVDIMCHLPAVCEEKGIPYTYTPSRADLGAAMGVKRGTVALLVRQNEEYKDLYDEVKEELSALNIP 159
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BLAST of Ribonucloprotein vs. TrEMBL
Match: U6JBB2 (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Echinococcus granulosus OX=6210 GN=EGR_07532 PE=4 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 2.957e-31
Identity = 64/133 (48.12%), Postives = 84/133 (63.16%), Query Frame = 2 
Query:  128 SLTYPIKASFATVISKPMAPEKLGKKLMKLLTSGSKNKKLILGVK-SVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCRRDVGIACGSKKSIAIVMIECDDAYASKFNKLSKKVLNLPQP 523
             ++Y  K +FA+VI+KPMA EKL K+L KL+     N  L  GVK SV + ++KK +GI++IAGDV PID V HIP +CE+ NVPYC++P R D+G    S  +   V I   D+Y   FNK  K V  LP P
Sbjct:   20 EMSYEEKLTFASVIAKPMASEKLTKRLGKLMKKAKNNGLLACGVKDSVKQIVKKKSEGILVIAGDVNPIDTVTHIPLICESHNVPYCYVPSRFDLGCTFASTVTSVCVFIRKHDSYEKLFNKCYKVVDELPLP 152
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BLAST of Ribonucloprotein vs. TrEMBL
Match: A0A553NFM1 (Ribosomal_L7Ae domain-containing protein OS=Tigriopus californicus OX=6832 GN=TCAL_00804 PE=4 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.544e-31
Identity = 61/138 (44.20%), Postives = 88/138 (63.77%), Query Frame = 2 
Query:  113 EEYYDSLTYPIKASFATVISKPMAPEKLGKKLMKLLTSGSKNKKLIL-GVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCRRDVGIACGSKKSIAIVMIECDDAYASKFNKLSKKVLNLPQP 523
            E+  D ++Y  K  F +VI+KPMA +KL KKL K +  GSK K LI  G+K V   IRK  +G+++ AGDVTPI+V+ H+P +CE  N+PY F P R+D+G A G K+   +VMI+  + Y    ++  K++  LP P
Sbjct:   12 EDDSDKVSYEEKLKFVSVIAKPMASKKLAKKLYKCIKKGSKQKDLIRNGLKDVQARIRKGERGLIVFAGDVTPIEVMCHLPAVCEEKNIPYVFTPSRQDLGTAMGVKRGSLMVMIKESNDYKDILDECQKEIQALPTP 149
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BLAST of Ribonucloprotein vs. TrEMBL
Match: A0A1X7VW12 (Ribonucloprotein OS=Amphimedon queenslandica OX=400682 GN=100632775 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 3.623e-31
Identity = 65/154 (42.21%), Postives = 89/154 (57.79%), Query Frame = 2 
Query:   74 MEEDKEYDLTK---EEEEYYDSLTYPIKASFATVISKPMAPEKLGKKLMKLLTSGSKNKKLILGVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCRRDVGIACGSKKSIAIVMIECDDAYASKFNKLSKKVLNLPQPF 526
            M+EDKE   T      E  Y+ L          VISKP+A  KL K+L+KL+   SK   L  GV+ V K++RK  KG+VI AGDV+PIDV+ HIP  CE   +PYC++P RR +G A G+K+  ++V++E D  Y   + +    V  LP P 
Sbjct:    1 MDEDKEVQPTSFVGNREPSYEELV-----KLVNVISKPLAGRKLTKRLLKLVKKSSKGNHLKRGVREVVKSLRKNNKGVVIFAGDVSPIDVISHIPVFCENKKIPYCYVPSRRQLGGAGGTKRPTSVVLVEKDKDYEELYEQCYSDVDALPLPI 149
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BLAST of Ribonucloprotein vs. TrEMBL
Match: A0A267EKZ4 (Ribonucloprotein (Fragment) OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig024721g2 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 3.723e-31
Identity = 64/132 (48.48%), Postives = 94/132 (71.21%), Query Frame = 2 
Query:  131 LTYPIKASFATVISKPMAPEKLGKKLMKLLTSGSKNKKLILGVKSVPKAIRKKRK-GIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCRRDVGIACGSKKSIAIVMIECDDAYASKFNKLSKKVLNLPQP 523
            ++Y  + ++ T I+ PMAP+K+ KKL+KL+    + KK+  GVK +PK I KKR+ GIV+IAGDVTPIDVV H+P L E  +VPYC+ P +R++G ACGS++ IA+V ++  D +   F+K+  K+L LP P
Sbjct:    2 MSYEEQLNYVTPIANPMAPKKVNKKLLKLIRKAKRGKKVHQGVKLIPKLIVKKRQSGIVVIAGDVTPIDVVSHLPLLLEEHSVPYCYSPSKREIGAACGSRRGIALVFVQRHDDFGDLFDKMRDKLLELPLP 133
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BLAST of Ribonucloprotein vs. TrEMBL
Match: A0A1I8IQI6 (Ribonucloprotein OS=Macrostomum lignano OX=282301 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.276e-31
Identity = 64/133 (48.12%), Postives = 94/133 (70.68%), Query Frame = 2 
Query:  131 LTYPIKASFATVISKPMAPEKLGKKLMKLLTSGSKNKKLILGVKSVPKAIRKKRK-GIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCRRDVGIACGSKKSIAIVMIECDDAYASKFNKLSKKVLNLPQPF 526
            ++Y  + ++ T I+ PMAP+K+ KKL+KL+    + KK+  GVK +PK I KKR+ GIV+IAGDVTPIDVV H+P L E  +VPYC+ P +R++G ACGS++ IA+V ++  D +   F+K+  K+L LP P 
Sbjct:   48 MSYEEQLNYVTPIANPMAPKKVNKKLLKLIRKAKRGKKVHQGVKLIPKLIVKKRQSGIVVIAGDVTPIDVVSHLPLLLEEHSVPYCYSPSKREIGAACGSRRGIALVFVQRHDDFGDLFDKMRDKLLELPLPI 180
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BLAST of Ribonucloprotein vs. Ensembl Cavefish
Match: nhp2 (NHP2 ribonucleoprotein [Source:NCBI gene;Acc:103032164])

HSP 1 Score: 102.449 bits (254), Expect = 9.459e-28
Identity = 54/142 (38.03%), Postives = 82/142 (57.75%), Query Frame = 2 
Query:  101 TKEEEEYYDSLTYPIKASFATVISKPMAPEKLGKKLMKLLTSGSKNKKLILGVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCRRDVGIACGSKKSIAIVMIECDDAYASKFNKLSKKVLNLPQPF 526
            T EEE      +Y    +    I+ P+A  KL KKL K +   +K K++  GVK V K I K   GIV++AGD  PIDV  H+P +CE  N+PY ++P + D+G + GSK+   ++MI+  D Y   +++  ++V  LP+P 
Sbjct:   10 TTEEEAGATERSYQDLIANINPIANPLASRKLSKKLYKCVKKAAKLKQIRRGVKEVQKFINKGETGIVVLAGDTLPIDVYCHLPVMCEDRNLPYAYIPSKVDLGSSAGSKRPTCVIMIKPHDEYKESYDECLEEVSALPKPL 151
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BLAST of Ribonucloprotein vs. Ensembl Cavefish
Match: snu13b (small nuclear ribonucleoprotein 13 [Source:NCBI gene;Acc:103032763])

HSP 1 Score: 65.4698 bits (158), Expect = 9.099e-14
Identity = 28/88 (31.82%), Postives = 49/88 (55.68%), Query Frame = 2 
Query:  176 PMAPEKLGKKLMKLLTSGSKNKKLILGVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCRRDVGIACGSKKSI 439
            P+A   L K ++ L+   S  K+L  G     K + +     +++A D  P+++++H+P LCE  NVPY F+  ++ +G ACG  + I
Sbjct:   12 PLADATLSKTILDLVQQASNYKQLRKGANESTKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPI 99
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BLAST of Ribonucloprotein vs. Ensembl Cavefish
Match: snu13b (small nuclear ribonucleoprotein 13 [Source:NCBI gene;Acc:103032763])

HSP 1 Score: 65.4698 bits (158), Expect = 1.035e-13
Identity = 28/88 (31.82%), Postives = 49/88 (55.68%), Query Frame = 2 
Query:  176 PMAPEKLGKKLMKLLTSGSKNKKLILGVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCRRDVGIACGSKKSI 439
            P+A   L K ++ L+   S  K+L  G     K + +     +++A D  P+++++H+P LCE  NVPY F+  ++ +G ACG  + I
Sbjct:   21 PLADATLSKTILDLVQQASNYKQLRKGANESTKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPI 108
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BLAST of Ribonucloprotein vs. Ensembl Cavefish
Match: snu13a (NHP2-like protein 1 [Source:NCBI gene;Acc:103040872])

HSP 1 Score: 63.929 bits (154), Expect = 4.180e-13
Identity = 26/88 (29.55%), Postives = 49/88 (55.68%), Query Frame = 2 
Query:  176 PMAPEKLGKKLMKLLTSGSKNKKLILGVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCRRDVGIACGSKKSI 439
            P+A   L K ++ L+   +  K+L  G     K + +     +++A D  P+++++H+P LCE  NVPY F+  ++ +G ACG  + +
Sbjct:   12 PLADATLTKTILDLVQQAANYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPV 99
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BLAST of Ribonucloprotein vs. Ensembl Cavefish
Match: rpl7a (ribosomal protein L7a [Source:NCBI gene;Acc:103021457])

HSP 1 Score: 46.9802 bits (110), Expect = 2.755e-6
Identity = 23/73 (31.51%), Postives = 38/73 (52.05%), Query Frame = 2 
Query:  245 LILGVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCRRDVGIACGSKKSIAIVMIECD 463
            L  GV SV   +  K+  +V+IA DV PI++V+ +P LC    VPYC +  +  +G     K   ++   + +
Sbjct:  144 LRAGVNSVTSLVESKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTSVCFTQTN 216
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BLAST of Ribonucloprotein vs. Ensembl Sea Lamprey
Match: nhp2 (NHP2 ribonucleoprotein homolog (yeast) [Source:NCBI gene;Acc:100003787])

HSP 1 Score: 102.449 bits (254), Expect = 2.232e-28
Identity = 52/144 (36.11%), Postives = 83/144 (57.64%), Query Frame = 2 
Query:  110 EEEYYDSLTYPIKASF------ATVISKPMAPEKLGKKLMKLLTSGSKNKKLILGVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCRRDVGIACGSKKSIAIVMIECDDAYASKFNKLSKKVLNLPQP 523
            EE   +    P++ S+       +VI+ P+A  KL K+L K +   SK K L  GVK V K ++K  KGIV++AGD  P++V+ HIP +CE  N+PYC+   + D+G A GSK++  +++++  + Y   ++     V  LP P
Sbjct:   11 EEGQAEPAAGPVEKSYEELVANVSVIANPLASRKLTKRLYKTIKKASKQKMLRRGVKEVQKFLKKGEKGIVVLAGDTQPVEVICHIPIMCEDQNLPYCYEGGKSDLGGAAGSKRATCVILVKAHEDYQEAYDDCFADVKALPLP 154
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BLAST of Ribonucloprotein vs. Ensembl Yeast
Match: NHP2 (Protein related to mammalian high mobility group (HMG) proteins; nuclear protein; essential for function of H/ACA-type snoRNPs, which are involved in 18S rRNA processing [Source:SGD;Acc:S000002367])

HSP 1 Score: 102.064 bits (253), Expect = 1.838e-28
Identity = 58/152 (38.16%), Postives = 88/152 (57.89%), Query Frame = 2 
Query:  101 TKEEEEYYDSLT---YPIKASFATVISKPMAPEKLGKKLMKLLTSGSKNKKLILGVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCRRDVGIACGSKKSIAIVMI-----------ECDDAYASKFNKLSKKVLNL 514
             KE +E  +S T   Y  +       +KP+A +KL KK++K +   SK K +  GVK V KA+RK  KG+V+IAGD++P DV+ HIP LCE  +VPY F+P ++D+G A  +K+  ++V I             ++ Y   FN++ K+V  L
Sbjct:    5 NKEHKESKESKTVDNYEARMPAVLPFAKPLASKKLNKKVLKTVKKASKAKNVKRGVKEVVKALRKGEKGLVVIAGDISPADVISHIPVLCEDHSVPYIFIPSKQDLGAAGATKRPTSVVFIVPGSNKKKDGKNKEEEYKESFNEVVKEVQAL 156
[Close]
BLAST of Ribonucloprotein vs. Ensembl Yeast
Match: SNU13 (RNA binding protein; part of U3 snoRNP involved in rRNA processing, part of U4/U6-U5 tri-snRNP involved in mRNA splicing, similar to human 15.5K protein [Source:SGD;Acc:S000000752])

HSP 1 Score: 69.707 bits (169), Expect = 2.596e-16
Identity = 32/102 (31.37%), Postives = 56/102 (54.90%), Query Frame = 2 
Query:  176 PMAPEKLGKKLMKLLTSGSKNKKLILGVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCRRDVGIACGSKKSIAIVMIECDDAYASK 481
            P+A   L ++++ ++   +  ++L  G     K + +     +I+A D  PI++++H+P LCE  NVPY F+P R  +G ACG  + +    I  +DA A K
Sbjct:   10 PLADAALTQQILDVVQQAANLRQLKKGANEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVPSRVALGRACGVSRPVIAASITTNDASAIK 111
[Close]
BLAST of Ribonucloprotein vs. Ensembl Yeast
Match: RPL8B (Ribosomal 60S subunit protein L8B; required for processing of 27SA3 pre-rRNA to 27SB pre-rRNA during assembly of large ribosomal subunit; depletion leads to a turnover of pre-rRNA; L8 binds to Domain I of 25S and 5.8 S rRNAs; mutation results in decreased amounts of free 60S subunits; homologous to mammalian ribosomal protein L7A, no bacterial homolog; RPL8B has a paralog, RPL8A, that arose from the whole genome duplication [Source:SGD;Acc:S000003968])

HSP 1 Score: 45.4394 bits (106), Expect = 1.283e-6
Identity = 22/69 (31.88%), Postives = 35/69 (50.72%), Query Frame = 2 
Query:  254 GVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCRRDVGIACGSKKSIAIVMIEC 460
            G+  V   I  K+  +V+IA DV PI++V+ +P LC+   VPY  +  +  +G     K S    + E 
Sbjct:  135 GLNHVVSLIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIIKGKARLGTLVNQKTSAVAALTEV 203
[Close]
BLAST of Ribonucloprotein vs. Ensembl Yeast
Match: RPL8A (Ribosomal 60S subunit protein L8A; required for processing of 27SA3 pre-rRNA to 27SB pre-rRNA during assembly of large ribosomal subunit; depletion leads to a turnover of pre-rRNA; L8 binds to Domain I of 25S and 5.8 S rRNAs; mutation results in decreased amounts of free 60S subunits; homologous to mammalian ribosomal protein L7A, no bacterial homolog; RPL8A has a paralog, RPL8B, that arose from the whole genome duplication [Source:SGD;Acc:S000001025])

HSP 1 Score: 44.669 bits (104), Expect = 2.121e-6
Identity = 22/70 (31.43%), Postives = 35/70 (50.00%), Query Frame = 2 
Query:  251 LGVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCRRDVGIACGSKKSIAIVMIEC 460
             G+  V   I  K+  +V+IA DV PI++V+ +P LC+   VPY  +  +  +G     K S    + E 
Sbjct:  134 YGLNHVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIVKGKARLGTLVNQKTSAVAALTEV 203
[Close]
BLAST of Ribonucloprotein vs. Ensembl Nematostella
Match: EDO48688 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RID9])

HSP 1 Score: 102.064 bits (253), Expect = 4.850e-28
Identity = 55/135 (40.74%), Postives = 82/135 (60.74%), Query Frame = 2 
Query:  122 YDSLTYPIKASFATVISKPMAPEKLGKKLMKLLTSGSKNKKLILGVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCRRDVGIACGSKKSIAIVMIECDDAYASKFNKLSKKVLNLPQPF 526
            YD L     A+  ++I+KP+A  KL KKL K +   SK K L  GVK V KA+RK  KG VI+AGDV+PIDV+ HIP +CE + +PY ++P + D+G +  +K+  +IV+I+  +     + +    +  LP P 
Sbjct:   23 YDEL-----AAAVSIIAKPLASRKLTKKLYKTVKKASKAKTLRRGVKEVVKALRKGEKGFVILAGDVSPIDVISHIPVMCEDSKIPYAYVPSKVDLGASSLTKRPTSIVLIKKHEDITEPYEECYDSIKALPLPI 152
[Close]
BLAST of Ribonucloprotein vs. Ensembl Nematostella
Match: EDO25827 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A8DVD2])

HSP 1 Score: 46.595 bits (109), Expect = 1.118e-7
Identity = 20/65 (30.77%), Postives = 38/65 (58.46%), Query Frame = 2 
Query:  329 IDVVIHIPKLCETANVPYCFLPCRRDVGIACGSKKSIAIVMIECDDAYASKFNKLSKKVLNLPQP 523
            IDV+ HIP +CE + +PY ++P + D+G +  +K+  +IV+I+  +     + +    +  LP P
Sbjct:    5 IDVISHIPVMCEDSKIPYAYVPSKVDLGASSLTKRPTSIVLIKKHEDITEPYEECYDSIKALPLP 69
[Close]
BLAST of Ribonucloprotein vs. Ensembl Nematostella
Match: EDO47245 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RN14])

HSP 1 Score: 48.1358 bits (113), Expect = 4.196e-7
Identity = 22/80 (27.50%), Postives = 39/80 (48.75%), Query Frame = 2 
Query:  254 GVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCRRDVGIACGSKKSIAIVMIECDDAYASKFNKL 493
            G+  +   +  K+  +V+IA DV PI++V+ +P LC    VPYC +  +  +G     K + A+ +        +  N L
Sbjct:  139 GINHITSLVENKKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGKVVHKKNATALCITGVRQEDKNSLNNL 218
[Close]
BLAST of Ribonucloprotein vs. Ensembl Medaka
Match: nhp2 (NHP2 ribonucleoprotein [Source:NCBI gene;Acc:101168479])

HSP 1 Score: 95.9005 bits (237), Expect = 2.981e-25
Identity = 46/120 (38.33%), Postives = 75/120 (62.50%), Query Frame = 2 
Query:  167 ISKPMAPEKLGKKLMKLLTSGSKNKKLILGVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCRRDVGIACGSKKSIAIVMIECDDAYASKFNKLSKKVLNLPQPF 526
            I++P+A  KL KKL K +   ++ K +  GVK V K I K  KGIV++AGD  PI+V  H+P +CE  ++PY ++P + D+G A GSK+   +++I+    Y   +++   +V +LP+P 
Sbjct:   32 IAQPLASRKLSKKLYKCVKKAARVKNIRRGVKEVQKFINKGEKGIVVLAGDTLPIEVYCHLPVMCEDRSLPYAYIPSKVDLGSAAGSKRPTCVILIKPHQDYQEAYDECLSEVSDLPKPL 151
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BLAST of Ribonucloprotein vs. Ensembl Medaka
Match: nhp2 (NHP2 ribonucleoprotein [Source:NCBI gene;Acc:101168479])

HSP 1 Score: 72.4034 bits (176), Expect = 3.542e-16
Identity = 34/78 (43.59%), Postives = 51/78 (65.38%), Query Frame = 2 
Query:  167 ISKPMAPEKLGKKLMKLLTSGSKNKKLILGVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCR 400
            I++P+A  KL KKL K +   ++ K +  GVK V K I K  KGIV++AGD  PI+V  H+P +CE  ++PY ++P +
Sbjct:   32 IAQPLASRKLSKKLYKCVKKAARVKNIRRGVKEVQKFINKGEKGIVVLAGDTLPIEVYCHLPVMCEDRSLPYAYIPSK 109
[Close]
BLAST of Ribonucloprotein vs. Ensembl Medaka
Match: snu13a (small nuclear ribonucleoprotein 13 [Source:NCBI gene;Acc:101175271])

HSP 1 Score: 64.6994 bits (156), Expect = 1.792e-13
Identity = 27/88 (30.68%), Postives = 49/88 (55.68%), Query Frame = 2 
Query:  176 PMAPEKLGKKLMKLLTSGSKNKKLILGVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCRRDVGIACGSKKSI 439
            P+A   L K ++ L+   S  K+L  G     K + +     +++A D  P+++++H+P LCE  NVPY F+  ++ +G ACG  + +
Sbjct:   12 PLADATLTKTILDLVQQASNYKQLRKGANEATKTLNRGIAEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPV 99
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BLAST of Ribonucloprotein vs. Ensembl Medaka
Match: RPL7A (ribosomal protein L7a [Source:NCBI gene;Acc:101163674])

HSP 1 Score: 47.7506 bits (112), Expect = 1.690e-6
Identity = 25/76 (32.89%), Postives = 40/76 (52.63%), Query Frame = 2 
Query:  245 LILGVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCRRDVGIACGSK--KSIAIVMIECDD 466
            L  GV +V   +  K+  +V+IA DV PI++V+ +P LC    VPYC +  +  +G     K   S+A   +  +D
Sbjct:  136 LRAGVNTVTTLVESKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIVKGKARLGRLVHRKTCTSVAFTQVNPED 211
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BLAST of Ribonucloprotein vs. Planmine SMEST
Match: SMESG000027686.1 (SMESG000027686.1)

HSP 1 Score: 312.383 bits (799), Expect = 3.757e-108
Identity = 150/152 (98.68%), Postives = 152/152 (100.00%), Query Frame = 2 
Query:   74 MEEDKEYDLTKEEEEYYDSLTYPIKASFATVISKPMAPEKLGKKLMKLLTSGSKNKKLILGVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCRRDVGIACGSKKSIAIVMIECDDAYASKFNKLSKKVLNLPQPFM 529
            MEEDKEYDLTKEEEEYYDSLTYPIKASFATVISKPMAPEKLGKKLMKLLTSGSKNKKL+LGVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCRRDVGIACGSKKSIAIVMIECDDAYASKFNKLSKKVLNLPQPF+
Sbjct:    1 MEEDKEYDLTKEEEEYYDSLTYPIKASFATVISKPMAPEKLGKKLMKLLTSGSKNKKLVLGVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCRRDVGIACGSKKSIAIVMIECDDAYASKFNKLSKKVLNLPQPFI 152
[Close]
BLAST of Ribonucloprotein vs. Planmine SMEST
Match: SMESG000027962.1 (SMESG000027962.1)

HSP 1 Score: 53.9138 bits (128), Expect = 1.570e-9
Identity = 31/95 (32.63%), Postives = 56/95 (58.95%), Query Frame = 2 
Query:  176 PMAPEKLGKKLMKLLTSGSKNKKLILGVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCRRDVGIACG-SKKSIAIVMIE 457
            P+A  +L  K++ ++   S   ++  G     KA+ + R  ++++A D  P+++++H+P LCE  NVPY F+P +  +G ACG S+  IA  + E
Sbjct:   11 PLAKNELTTKIINVIQKASSLSQIKKGANEATKALNRGRAQLIVMAADAEPLEILLHLPLLCEDKNVPYVFIPSKTALGRACGVSRHVIACAITE 105
[Close]
BLAST of Ribonucloprotein vs. Planmine SMEST
Match: SMESG000020535.1 (SMESG000020535.1)

HSP 1 Score: 55.8398 bits (133), Expect = 1.662e-9
Identity = 26/81 (32.10%), Postives = 44/81 (54.32%), Query Frame = 2 
Query:  254 GVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCRRDVGIACGSKKSIAIVMIECDDAYASKFNKLS 496
            GV+ +   + +K+  +V+IA DV PI++V+H+P LC    VPYC L  +  +G     K   A+ ++       +  NKL+
Sbjct:  147 GVREITTLVEQKKAQMVVIAHDVDPIEIVLHLPALCRKMGVPYCILKGKAILGQIVRKKTCSAVALVNVAAEDKAPLNKLT 227
The following BLAST results are available for this feature:
BLAST of Ribonucloprotein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
NHP22.982e-2636.67NHP2 ribonucleoprotein [Source:HGNC Symbol;Acc:HGN... [more]
NHP25.097e-1641.03NHP2 ribonucleoprotein [Source:HGNC Symbol;Acc:HGN... [more]
NHP27.364e-1641.03NHP2 ribonucleoprotein [Source:HGNC Symbol;Acc:HGN... [more]
SNU131.635e-1331.82small nuclear ribonucleoprotein 13 [Source:HGNC Sy... [more]
SNU131.635e-1331.82small nuclear ribonucleoprotein 13 [Source:HGNC Sy... [more]
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BLAST of Ribonucloprotein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 4
Match NameE-valueIdentityDescription
Y48A6B.31.327e-2235.04Putative H/ACA ribonucleoprotein complex subunit 2... [more]
rpl-7A4.499e-1231.4060S ribosomal protein L7a [Source:UniProtKB/Swiss... [more]
rpl-7A6.528e-1231.4060S ribosomal protein L7a [Source:UniProtKB/Swiss... [more]
M28.51.258e-834.94NHP2-like protein 1 homolog [Source:UniProtKB/Swi... [more]
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BLAST of Ribonucloprotein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5
Match NameE-valueIdentityDescription
NHP22.506e-2737.50gene:FBgn0029148 transcript:FBtr0333076[more]
NHP22.506e-2737.50gene:FBgn0029148 transcript:FBtr0075698[more]
hoip5.930e-1636.36gene:FBgn0286786 transcript:FBtr0079846[more]
hoip5.930e-1636.36gene:FBgn0286786 transcript:FBtr0335494[more]
RpL7A1.020e-730.00gene:FBgn0014026 transcript:FBtr0345293[more]
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BLAST of Ribonucloprotein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
nhp24.351e-2440.00NHP2 ribonucleoprotein homolog (yeast) [Source:NCB... [more]
snu13b9.766e-1432.53SNU13 homolog, small nuclear ribonucleoprotein b (... [more]
snu13a2.388e-1329.55SNU13 homolog, small nuclear ribonucleoprotein a (... [more]
rpl7a2.125e-634.18ribosomal protein L7a [Source:ZFIN;Acc:ZDB-GENE-03... [more]
rpl7a2.229e-634.18ribosomal protein L7a [Source:ZFIN;Acc:ZDB-GENE-03... [more]
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BLAST of Ribonucloprotein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 3
Match NameE-valueIdentityDescription
nhp22.252e-2638.52NHP2 ribonucleoprotein [Source:NCBI gene;Acc:39458... [more]
snu131.498e-1330.68small nuclear ribonucleoprotein 13 [Source:NCBI ge... [more]
rpl7a2.443e-632.89ribosomal protein L7a [Source:NCBI gene;Acc:447981... [more]
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BLAST of Ribonucloprotein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 3
Match NameE-valueIdentityDescription
Nhp22.562e-2738.33NHP2 ribonucleoprotein [Source:MGI Symbol;Acc:MGI:... [more]
Snu131.123e-1331.82SNU13 homolog, small nuclear ribonucleoprotein (U4... [more]
Rpl7a1.612e-631.58ribosomal protein L7A [Source:MGI Symbol;Acc:MGI:1... [more]
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BLAST of Ribonucloprotein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q8I7X7|NHP2_BRABE3.194e-2939.23H/ACA ribonucleoprotein complex subunit 2-like pro... [more]
sp|Q6XIP0|NHP2_DROYA4.028e-2738.19H/ACA ribonucleoprotein complex subunit 2-like pro... [more]
sp|P32495|NHP2_YEAST1.276e-2638.16H/ACA ribonucleoprotein complex subunit NHP2 OS=Sa... [more]
sp|Q9CRB2|NHP2_MOUSE1.792e-2638.33H/ACA ribonucleoprotein complex subunit 2 OS=Mus m... [more]
sp|Q9V3U2|NHP2_DROME2.512e-2637.50H/ACA ribonucleoprotein complex subunit 2-like pro... [more]
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BLAST of Ribonucloprotein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
U6JBB22.957e-3148.12H/ACA ribonucleoprotein complex subunit 2-like pro... [more]
A0A553NFM13.544e-3144.20Ribosomal_L7Ae domain-containing protein OS=Tigrio... [more]
A0A1X7VW123.623e-3142.21Ribonucloprotein OS=Amphimedon queenslandica OX=40... [more]
A0A267EKZ43.723e-3148.48Ribonucloprotein (Fragment) OS=Macrostomum lignano... [more]
A0A1I8IQI67.276e-3148.12Ribonucloprotein OS=Macrostomum lignano OX=282301 ... [more]
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BLAST of Ribonucloprotein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
nhp29.459e-2838.03NHP2 ribonucleoprotein [Source:NCBI gene;Acc:10303... [more]
snu13b9.099e-1431.82small nuclear ribonucleoprotein 13 [Source:NCBI ge... [more]
snu13b1.035e-1331.82small nuclear ribonucleoprotein 13 [Source:NCBI ge... [more]
snu13a4.180e-1329.55NHP2-like protein 1 [Source:NCBI gene;Acc:10304087... [more]
rpl7a2.755e-631.51ribosomal protein L7a [Source:NCBI gene;Acc:103021... [more]
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BLAST of Ribonucloprotein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
nhp22.232e-2836.11NHP2 ribonucleoprotein homolog (yeast) [Source:NCB... [more]
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BLAST of Ribonucloprotein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 4
Match NameE-valueIdentityDescription
NHP21.838e-2838.16Protein related to mammalian high mobility group (... [more]
SNU132.596e-1631.37RNA binding protein; part of U3 snoRNP involved in... [more]
RPL8B1.283e-631.88Ribosomal 60S subunit protein L8B; required for pr... [more]
RPL8A2.121e-631.43Ribosomal 60S subunit protein L8A; required for pr... [more]
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BLAST of Ribonucloprotein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 3
Match NameE-valueIdentityDescription
EDO486884.850e-2840.74Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO258271.118e-730.77Predicted protein [Source:UniProtKB/TrEMBL;Acc:A8... [more]
EDO472454.196e-727.50Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of Ribonucloprotein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 4
Match NameE-valueIdentityDescription
nhp22.981e-2538.33NHP2 ribonucleoprotein [Source:NCBI gene;Acc:10116... [more]
nhp23.542e-1643.59NHP2 ribonucleoprotein [Source:NCBI gene;Acc:10116... [more]
snu13a1.792e-1330.68small nuclear ribonucleoprotein 13 [Source:NCBI ge... [more]
RPL7A1.690e-632.89ribosomal protein L7a [Source:NCBI gene;Acc:101163... [more]
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BLAST of Ribonucloprotein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3
Match NameE-valueIdentityDescription
SMESG000027686.13.757e-10898.68SMESG000027686.1[more]
SMESG000027962.11.570e-932.63SMESG000027962.1[more]
SMESG000020535.11.662e-932.10SMESG000020535.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30031567 ID=SMED30031567|Name=Ribonucloprotein|organism=Schmidtea mediterranea sexual|type=transcript|length=559bp
TTTTTTTTAATTTCAAAAAGTCTGTTATAATAAATAAGCGTGTAAAATTT
TAATATAGTTGTAGATACAAAAAATGGAAGAGGATAAAGAATACGATTTA
ACTAAAGAAGAAGAAGAATATTATGATAGCTTGACATATCCAATCAAGGC
ATCGTTTGCTACTGTTATCAGTAAGCCAATGGCTCCAGAAAAATTAGGTA
AAAAACTAATGAAGCTACTGACAAGTGGTAGCAAGAACAAAAAATTAATA
TTAGGTGTCAAATCTGTCCCAAAAGCTATTCGCAAAAAGAGGAAGGGAAT
TGTTATTATAGCTGGCGATGTAACTCCTATTGACGTCGTAATTCATATTC
CAAAATTATGTGAAACTGCAAATGTTCCATATTGTTTTTTACCATGCAGA
AGAGATGTTGGTATAGCATGTGGATCTAAAAAGTCAATTGCTATTGTAAT
GATTGAATGTGATGATGCATATGCTTCCAAATTCAATAAACTTAGCAAGA
AAGTTCTTAACCTACCGCAACCTTTTATGTAAATAAATATTTCATTCGAA
AAAAAAGAT
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protein sequence of SMED30031567-orf-1

>SMED30031567-orf-1 ID=SMED30031567-orf-1|Name=SMED30031567-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=153bp
MEEDKEYDLTKEEEEYYDSLTYPIKASFATVISKPMAPEKLGKKLMKLLT
SGSKNKKLILGVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETAN
VPYCFLPCRRDVGIACGSKKSIAIVMIECDDAYASKFNKLSKKVLNLPQP
FM*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: cellular component
TermDefinition
GO:0005634nucleus
GO:0005730nucleolus
GO:0019013viral nucleocapsid
GO:0030529intracellular ribonucleoprotein complex
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR002415H/ACA_rnp_Nhp2_euk
IPR018492Ribosomal_L7Ae/L8/Nhp2
IPR004038Ribosomal_L7Ae/L30e/S12e/Gad45
IPR029064L30e-like
Vocabulary: molecular function
TermDefinition
GO:0003723RNA binding
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002415H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryotePRINTSPR00883NUCLEARHMGcoord: 31..44
score: 31.43
coord: 44..59
score: 26.25
coord: 105..117
score: 43.08
coord: 61..71
score: 29.09
IPR018492Ribosomal protein L7Ae/L8/Nhp2 familyPRINTSPR00881L7ARS6FAMILYcoord: 93..103
score: 57.44
coord: 103..117
score: 28.18
coord: 77..90
score: 50.97
coord: 58..72
score: 26.67
IPR004038Ribosomal protein L7Ae/L30e/S12e/Gadd45PFAMPF01248Ribosomal_L7Aecoord: 44..128
e-value: 8.7E-19
score: 67.1
IPR02906450S ribosomal protein L30e-likeGENE3DG3DSA:3.30.1330.30coord: 29..147
e-value: 1.9E-34
score: 119.8
IPR02906450S ribosomal protein L30e-likeSUPERFAMILYSSF55315L30e-likecoord: 32..135
NoneNo IPR availablePANTHERPTHR23105:SF12H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 2coord: 28..148
NoneNo IPR availablePANTHERPTHR23105RIBOSOMAL PROTEIN L7AE FAMILY MEMBERcoord: 28..148