RING-type domain-containing protein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30031551 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 4
Homology
BLAST of RING-type domain-containing protein vs. Ensembl Human
Match: RNF10 (ring finger protein 10 [Source:HGNC Symbol;Acc:HGNC:10055]) HSP 1 Score: 58.151 bits (139), Expect = 4.581e-8 Identity = 35/130 (26.92%), Postives = 59/130 (45.38%), Query Frame = 2 Query: 35 NKINHRL----AFIQNRCTICVYEKYKFLRNIHD----FSWTSVSKIICFTNDSKVCSICFDKIILARMDRCGHIFCLSCILSVFDVNKSNHAPCPMCKDVEISINSLKRVEFHEQKLPIIGEPIKLSLL 400 NK H+ F+Q C V E + + D +W V ++ +++ C IC A++ RCGHIFC +CIL +++ + CP+C + LK V E ++G+ I + L+ Sbjct: 169 NKWGHKPFNKELFLQANCQFVVSEDQDYTAHFADPDTLVNWDFVEQVRICSHEVPSCPICLYPPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYS-SVHKKDLKSVVATESHQYVVGDTITMQLM 297
BLAST of RING-type domain-containing protein vs. Ensembl Human
Match: RNF10 (ring finger protein 10 [Source:HGNC Symbol;Acc:HGNC:10055]) HSP 1 Score: 57.7658 bits (138), Expect = 4.793e-8 Identity = 35/130 (26.92%), Postives = 59/130 (45.38%), Query Frame = 2 Query: 35 NKINHRL----AFIQNRCTICVYEKYKFLRNIHD----FSWTSVSKIICFTNDSKVCSICFDKIILARMDRCGHIFCLSCILSVFDVNKSNHAPCPMCKDVEISINSLKRVEFHEQKLPIIGEPIKLSLL 400 NK H+ F+Q C V E + + D +W V ++ +++ C IC A++ RCGHIFC +CIL +++ + CP+C + LK V E ++G+ I + L+ Sbjct: 169 NKWGHKPFNKELFLQANCQFVVSEDQDYTAHFADPDTLVNWDFVEQVRICSHEVPSCPICLYPPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYS-SVHKKDLKSVVATESHQYVVGDTITMQLM 297
BLAST of RING-type domain-containing protein vs. Ensembl Human
Match: RNF10 (ring finger protein 10 [Source:HGNC Symbol;Acc:HGNC:10055]) HSP 1 Score: 53.1434 bits (126), Expect = 2.150e-7 Identity = 26/90 (28.89%), Postives = 45/90 (50.00%), Query Frame = 2 Query: 131 WTSVSKIICFTNDSKVCSICFDKIILARMDRCGHIFCLSCILSVFDVNKSNHAPCPMCKDVEISINSLKRVEFHEQKLPIIGEPIKLSLL 400 W V ++ +++ C IC A++ RCGHIFC +CIL +++ + CP+C + LK V E ++G+ I + L+ Sbjct: 7 WDFVEQVRICSHEVPSCPICLYPPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYS-SVHKKDLKSVVATESHQYVVGDTITMQLM 95
BLAST of RING-type domain-containing protein vs. Ensembl Fly
Match: CG12099 (gene:FBgn0035232 transcript:FBtr0072829) HSP 1 Score: 51.2174 bits (121), Expect = 2.579e-6 Identity = 25/92 (27.17%), Postives = 42/92 (45.65%), Query Frame = 2 Query: 131 WTSVSKIICFTNDSKVCSICFDKIILARMDRCGHIFCLSCILSVFDVNKSNHAPCPMCKDVEISINSLKRVEFHEQKLPIIGEPIKLSLLVK 406 W+ + +I T + C IC + A++ RCGH +C C+L ++ CP+C D I LK + + +GE I L+ + Sbjct: 196 WSYIEQINIQTTEELQCPICLYPPVAAKLTRCGHAYCWPCLLHYLSLSDKTWRKCPICYDA-IHAGDLKSCTIEQLRDLQVGEKITFQLMRR 286
BLAST of RING-type domain-containing protein vs. Ensembl Fly
Match: CG12099 (gene:FBgn0035232 transcript:FBtr0072828) HSP 1 Score: 51.2174 bits (121), Expect = 2.579e-6 Identity = 25/92 (27.17%), Postives = 42/92 (45.65%), Query Frame = 2 Query: 131 WTSVSKIICFTNDSKVCSICFDKIILARMDRCGHIFCLSCILSVFDVNKSNHAPCPMCKDVEISINSLKRVEFHEQKLPIIGEPIKLSLLVK 406 W+ + +I T + C IC + A++ RCGH +C C+L ++ CP+C D I LK + + +GE I L+ + Sbjct: 196 WSYIEQINIQTTEELQCPICLYPPVAAKLTRCGHAYCWPCLLHYLSLSDKTWRKCPICYDA-IHAGDLKSCTIEQLRDLQVGEKITFQLMRR 286
BLAST of RING-type domain-containing protein vs. Ensembl Zebrafish
Match: rnf10 (ring finger protein 10 [Source:ZFIN;Acc:ZDB-GENE-030131-2969]) HSP 1 Score: 58.151 bits (139), Expect = 2.917e-8 Identity = 33/131 (25.19%), Postives = 62/131 (47.33%), Query Frame = 2 Query: 20 KYKMDNKINHRLAFIQNRCTICVYEKYKFLRNIHD----FSWTSVSKIICFTNDSKVCSICFDKIILARMDRCGHIFCLSCILSVFDVNKSNHAPCPMCKDVEISINSLKRVEFHEQKLPIIGEPIKLSLL 400 K+ +K ++ F+Q C V + + + D W V ++ ++++ C IC + A M RCGHI+C C+L +++ + + CP+C + S + LK V E + + G I + L+ Sbjct: 165 KWGHKHKPFNKELFLQANCQFVVSDDQDYQAHFTDPDTLVDWDCVQQVRIYSHEVPSCPICLYPPVAAHMTRCGHIYCWPCMLHYLSLSEKSWSKCPICYEAVHSAD-LKSVVAMETRQYVSGNSITMCLM 294
BLAST of RING-type domain-containing protein vs. Ensembl Zebrafish
Match: zgc:66440 (zgc:66440 [Source:ZFIN;Acc:ZDB-GENE-040426-1640]) HSP 1 Score: 50.0618 bits (118), Expect = 3.563e-6 Identity = 25/67 (37.31%), Postives = 40/67 (59.70%), Query Frame = 2 Query: 119 HDFSWTSVSK-IICFTNDSKVCSICFDKII-LARMDRCGHIFCLSCILSVFDVNKSNHAPCPMCKDV 313 + S +VS+ ++C +S VCSIC +++ +D+CGH FC SC+ F V K+ CP+C+ V Sbjct: 86 QEASARTVSELVVCHEEESTVCSICMGEMVEKTTLDKCGHAFCRSCLEQAFQVKKA----CPVCRLV 148
BLAST of RING-type domain-containing protein vs. Ensembl Zebrafish
Match: zgc:66440 (zgc:66440 [Source:ZFIN;Acc:ZDB-GENE-040426-1640]) HSP 1 Score: 50.0618 bits (118), Expect = 3.563e-6 Identity = 25/67 (37.31%), Postives = 40/67 (59.70%), Query Frame = 2 Query: 119 HDFSWTSVSK-IICFTNDSKVCSICFDKII-LARMDRCGHIFCLSCILSVFDVNKSNHAPCPMCKDV 313 + S +VS+ ++C +S VCSIC +++ +D+CGH FC SC+ F V K+ CP+C+ V Sbjct: 86 QEASARTVSELVVCHEEESTVCSICMGEMVEKTTLDKCGHAFCRSCLEQAFQVKKA----CPVCRLV 148
BLAST of RING-type domain-containing protein vs. Ensembl Zebrafish
Match: zgc:66440 (zgc:66440 [Source:ZFIN;Acc:ZDB-GENE-040426-1640]) HSP 1 Score: 50.0618 bits (118), Expect = 5.174e-6 Identity = 25/67 (37.31%), Postives = 40/67 (59.70%), Query Frame = 2 Query: 119 HDFSWTSVSK-IICFTNDSKVCSICFDKII-LARMDRCGHIFCLSCILSVFDVNKSNHAPCPMCKDV 313 + S +VS+ ++C +S VCSIC +++ +D+CGH FC SC+ F V K+ CP+C+ V Sbjct: 156 QEASARTVSELVVCHEEESTVCSICMGEMVEKTTLDKCGHAFCRSCLEQAFQVKKA----CPVCRLV 218
BLAST of RING-type domain-containing protein vs. Ensembl Zebrafish
Match: zgc:66440 (zgc:66440 [Source:ZFIN;Acc:ZDB-GENE-040426-1640]) HSP 1 Score: 49.6766 bits (117), Expect = 6.469e-6 Identity = 22/56 (39.29%), Postives = 34/56 (60.71%), Query Frame = 2 Query: 149 IICFTNDSKVCSICFDKII-LARMDRCGHIFCLSCILSVFDVNKSNHAPCPMCKDV 313 ++C +S VCSIC +++ +D+CGH FC SC+ F V K+ CP+C+ V Sbjct: 191 VVCHEEESTVCSICMGEMVEKTTLDKCGHAFCRSCLEQAFQVKKA----CPVCRLV 242
BLAST of RING-type domain-containing protein vs. Ensembl Xenopus
Match: egfl7 (EGF like domain multiple 7 [Source:Xenbase;Acc:XB-GENE-491413]) HSP 1 Score: 64.3142 bits (155), Expect = 3.969e-10 Identity = 38/131 (29.01%), Postives = 66/131 (50.38%), Query Frame = 2 Query: 20 KYKMDNKINHRLAFIQNRCTICVYEKYKFLRNIHD----FSWTSVSKIICFTNDSKVCSICFDKIILARMDRCGHIFCLSCILSVFDVNKSNHAPCPMCKDVEISINSLKRVEFHEQKLPIIGEPIKLSLL 400 ++K NK ++ F+Q C V + + + D SW V ++ F+++ C IC + A++ RCGHIFC +CIL +++ + + CP+C I + LK V E L +G+ I + L+ Sbjct: 148 RHKWGNKPFNKELFLQANCQFVVSDDNDYSVHFADPDTLVSWDFVEQVRIFSHEVPSCPICLYPPVAAKITRCGHIFCWACILHYLSLSEKDWSRCPICYSSVIKKD-LKSVVTTETHLYSVGDKITMQLM 277
BLAST of RING-type domain-containing protein vs. Ensembl Xenopus
Match: egfl7 (EGF like domain multiple 7 [Source:Xenbase;Acc:XB-GENE-491413]) HSP 1 Score: 64.3142 bits (155), Expect = 4.032e-10 Identity = 38/131 (29.01%), Postives = 66/131 (50.38%), Query Frame = 2 Query: 20 KYKMDNKINHRLAFIQNRCTICVYEKYKFLRNIHD----FSWTSVSKIICFTNDSKVCSICFDKIILARMDRCGHIFCLSCILSVFDVNKSNHAPCPMCKDVEISINSLKRVEFHEQKLPIIGEPIKLSLL 400 ++K NK ++ F+Q C V + + + D SW V ++ F+++ C IC + A++ RCGHIFC +CIL +++ + + CP+C I + LK V E L +G+ I + L+ Sbjct: 148 RHKWGNKPFNKELFLQANCQFVVSDDNDYSVHFADPDTLVSWDFVEQVRIFSHEVPSCPICLYPPVAAKITRCGHIFCWACILHYLSLSEKDWSRCPICYSSVIKKD-LKSVVTTETHLYSVGDKITMQLM 277
BLAST of RING-type domain-containing protein vs. Ensembl Mouse
Match: Rnf10 (ring finger protein 10 [Source:MGI Symbol;Acc:MGI:1859162]) HSP 1 Score: 58.151 bits (139), Expect = 2.347e-8 Identity = 35/134 (26.12%), Postives = 60/134 (44.78%), Query Frame = 2 Query: 23 YKMDNKINHRL----AFIQNRCTICVYEKYKFLRNIHD----FSWTSVSKIICFTNDSKVCSICFDKIILARMDRCGHIFCLSCILSVFDVNKSNHAPCPMCKDVEISINSLKRVEFHEQKLPIIGEPIKLSLL 400 + NK H+ F+Q C V E + + D +W V ++ +++ C IC A++ RCGHIFC +CIL +++ + CP+C + LK V E + +G+ I + L+ Sbjct: 128 WGKRNKWGHKPFNKELFLQANCQFVVSEDQDYAAHFADPDTLVNWDFVEQVRICSHEVPSCPICLYPPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYS-SVHKKDLKSVVATESRQYAVGDTITMQLM 260
BLAST of RING-type domain-containing protein vs. Ensembl Mouse
Match: Rnf10 (ring finger protein 10 [Source:MGI Symbol;Acc:MGI:1859162]) HSP 1 Score: 58.151 bits (139), Expect = 2.802e-8 Identity = 35/130 (26.92%), Postives = 59/130 (45.38%), Query Frame = 2 Query: 35 NKINHRL----AFIQNRCTICVYEKYKFLRNIHD----FSWTSVSKIICFTNDSKVCSICFDKIILARMDRCGHIFCLSCILSVFDVNKSNHAPCPMCKDVEISINSLKRVEFHEQKLPIIGEPIKLSLL 400 NK H+ F+Q C V E + + D +W V ++ +++ C IC A++ RCGHIFC +CIL +++ + CP+C + LK V E + +G+ I + L+ Sbjct: 169 NKWGHKPFNKELFLQANCQFVVSEDQDYAAHFADPDTLVNWDFVEQVRICSHEVPSCPICLYPPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYS-SVHKKDLKSVVATESRQYAVGDTITMQLM 297
BLAST of RING-type domain-containing protein vs. Ensembl Mouse
Match: Rnf10 (ring finger protein 10 [Source:MGI Symbol;Acc:MGI:1859162]) HSP 1 Score: 58.151 bits (139), Expect = 2.852e-8 Identity = 35/130 (26.92%), Postives = 59/130 (45.38%), Query Frame = 2 Query: 35 NKINHRL----AFIQNRCTICVYEKYKFLRNIHD----FSWTSVSKIICFTNDSKVCSICFDKIILARMDRCGHIFCLSCILSVFDVNKSNHAPCPMCKDVEISINSLKRVEFHEQKLPIIGEPIKLSLL 400 NK H+ F+Q C V E + + D +W V ++ +++ C IC A++ RCGHIFC +CIL +++ + CP+C + LK V E + +G+ I + L+ Sbjct: 169 NKWGHKPFNKELFLQANCQFVVSEDQDYAAHFADPDTLVNWDFVEQVRICSHEVPSCPICLYPPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYS-SVHKKDLKSVVATESRQYAVGDTITMQLM 297
BLAST of RING-type domain-containing protein vs. Ensembl Mouse
Match: Rnf10 (ring finger protein 10 [Source:MGI Symbol;Acc:MGI:1859162]) HSP 1 Score: 58.151 bits (139), Expect = 2.903e-8 Identity = 35/130 (26.92%), Postives = 59/130 (45.38%), Query Frame = 2 Query: 35 NKINHRL----AFIQNRCTICVYEKYKFLRNIHD----FSWTSVSKIICFTNDSKVCSICFDKIILARMDRCGHIFCLSCILSVFDVNKSNHAPCPMCKDVEISINSLKRVEFHEQKLPIIGEPIKLSLL 400 NK H+ F+Q C V E + + D +W V ++ +++ C IC A++ RCGHIFC +CIL +++ + CP+C + LK V E + +G+ I + L+ Sbjct: 169 NKWGHKPFNKELFLQANCQFVVSEDQDYAAHFADPDTLVNWDFVEQVRICSHEVPSCPICLYPPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYS-SVHKKDLKSVVATESRQYAVGDTITMQLM 297
BLAST of RING-type domain-containing protein vs. UniProt/SwissProt
Match: sp|Q32NQ8|RNF10_XENLA (RING finger protein 10 OS=Xenopus laevis OX=8355 GN=rnf10 PE=2 SV=1) HSP 1 Score: 62.3882 bits (150), Expect = 1.027e-8 Identity = 38/131 (29.01%), Postives = 65/131 (49.62%), Query Frame = 2 Query: 20 KYKMDNKINHRLAFIQNRCTICVYEKYKFLRNIHD----FSWTSVSKIICFTNDSKVCSICFDKIILARMDRCGHIFCLSCILSVFDVNKSNHAPCPMCKDVEISINSLKRVEFHEQKLPIIGEPIKLSLL 400 ++K NK ++ F+Q C V + + + D SW V ++ F+++ C IC + A++ RCGHIFC CIL +++ + + CP+C I + LK V E L +G+ I + L+ Sbjct: 149 RHKWANKPFNKELFLQANCQFVVSDVNDYSVHFTDPDTLVSWDFVEQVRIFSHEVASCPICLYPPVAAKITRCGHIFCWPCILHYLSLSEKDWSRCPICYSSIIKKD-LKSVVATETHLYSVGDKITMQLM 278
BLAST of RING-type domain-containing protein vs. UniProt/SwissProt
Match: sp|Q5XI59|RNF10_RAT (RING finger protein 10 OS=Rattus norvegicus OX=10116 GN=Rnf10 PE=2 SV=1) HSP 1 Score: 60.8474 bits (146), Expect = 2.786e-8 Identity = 36/130 (27.69%), Postives = 60/130 (46.15%), Query Frame = 2 Query: 35 NKINHRL----AFIQNRCTICVYEKYKFLRNIHD----FSWTSVSKIICFTNDSKVCSICFDKIILARMDRCGHIFCLSCILSVFDVNKSNHAPCPMCKDVEISINSLKRVEFHEQKLPIIGEPIKLSLL 400 NK H+ F+Q C V E + N D +W V ++ +++ C IC A++ RCGHIFC +CIL +++ + CP+C + LK V E + ++G+ I + L+ Sbjct: 169 NKWGHKPFNKELFLQANCQFVVSEDQDYTANFADPDTLVNWDFVEQVRICSHEVPSCPICLYPPTAAKITRCGHIFCWACILHYLSLSERTWSKCPICYS-SVHKKDLKSVVATESRQYVVGDTITMQLM 297
BLAST of RING-type domain-containing protein vs. UniProt/SwissProt
Match: sp|Q08E13|RNF10_BOVIN (RING finger protein 10 OS=Bos taurus OX=9913 GN=RNF10 PE=2 SV=1) HSP 1 Score: 58.151 bits (139), Expect = 1.744e-7 Identity = 35/130 (26.92%), Postives = 60/130 (46.15%), Query Frame = 2 Query: 35 NKINHRL----AFIQNRCTICVYEKYKFLRNIHD----FSWTSVSKIICFTNDSKVCSICFDKIILARMDRCGHIFCLSCILSVFDVNKSNHAPCPMCKDVEISINSLKRVEFHEQKLPIIGEPIKLSLL 400 NK H+ F+Q C V E + + D +W V ++ +++ C IC A++ RCGHIFC +CIL +++ + CP+C + LK V E + ++G+ I + L+ Sbjct: 169 NKWGHKPFNKELFLQANCQFVVSEDQDYTVHFADPDTLVNWDFVEQVRICSHEVPSCPICLYPPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYS-SVHKKDLKSVVATESRQYVVGDTITMQLM 297
BLAST of RING-type domain-containing protein vs. UniProt/SwissProt
Match: sp|Q3UIW5|RNF10_MOUSE (RING finger protein 10 OS=Mus musculus OX=10090 GN=Rnf10 PE=2 SV=2) HSP 1 Score: 58.151 bits (139), Expect = 1.995e-7 Identity = 35/130 (26.92%), Postives = 59/130 (45.38%), Query Frame = 2 Query: 35 NKINHRL----AFIQNRCTICVYEKYKFLRNIHD----FSWTSVSKIICFTNDSKVCSICFDKIILARMDRCGHIFCLSCILSVFDVNKSNHAPCPMCKDVEISINSLKRVEFHEQKLPIIGEPIKLSLL 400 NK H+ F+Q C V E + + D +W V ++ +++ C IC A++ RCGHIFC +CIL +++ + CP+C + LK V E + +G+ I + L+ Sbjct: 169 NKWGHKPFNKELFLQANCQFVVSEDQDYAAHFADPDTLVNWDFVEQVRICSHEVPSCPICLYPPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYS-SVHKKDLKSVVATESRQYAVGDTITMQLM 297
BLAST of RING-type domain-containing protein vs. UniProt/SwissProt
Match: sp|Q8N5U6|RNF10_HUMAN (RING finger protein 10 OS=Homo sapiens OX=9606 GN=RNF10 PE=1 SV=2) HSP 1 Score: 58.151 bits (139), Expect = 2.200e-7 Identity = 35/130 (26.92%), Postives = 59/130 (45.38%), Query Frame = 2 Query: 35 NKINHRL----AFIQNRCTICVYEKYKFLRNIHD----FSWTSVSKIICFTNDSKVCSICFDKIILARMDRCGHIFCLSCILSVFDVNKSNHAPCPMCKDVEISINSLKRVEFHEQKLPIIGEPIKLSLL 400 NK H+ F+Q C V E + + D +W V ++ +++ C IC A++ RCGHIFC +CIL +++ + CP+C + LK V E ++G+ I + L+ Sbjct: 169 NKWGHKPFNKELFLQANCQFVVSEDQDYTAHFADPDTLVNWDFVEQVRICSHEVPSCPICLYPPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYS-SVHKKDLKSVVATESHQYVVGDTITMQLM 297
BLAST of RING-type domain-containing protein vs. TrEMBL
Match: A0A0R3WNE4 (RING-type domain-containing protein OS=Hydatigena taeniaeformis OX=6205 GN=TTAC_LOCUS2271 PE=4 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.146e-9 Identity = 70/324 (21.60%), Postives = 143/324 (44.14%), Query Frame = 2 Query: 131 WTSVSKIICFTNDSKVCSICFDKIILARMDRCGHIFCLSCILSVFDV-NKSNHAPCPMCKDVEISINSLKRVEFHEQKLPIIGEPIKLSLLVKGQQNVCPRFAHFLTSYKDYNLPKLENSISKFLS-IVTEKDFRSQQDIIDDLNXXXXXXXXXXXXXXFPRXXXXXXXXXXXXXXXHFQDEIKVINKNEIDENCEIFEDNFNLIEYKNMKEKFELFYQAEGYRFVFLDQLNQKQILDKSQHTWKVVPVQIKSTIREIREEFVDNEFLMRTK-LSHLFRGVKVTIVTIDLPNALLEPIT---GGNLRILRSHQEQIYKARKEDL 1084 W+ V + C+ + VC IC + IL RM CGH++C C+ N ++ C +C V++ N L+RV +P +G+ ++L L+ + ++++ P A + + + + N S+FLS +V K Q+DI+ ++ +K ++ + E+ L+ + K V K ++E D + + E + +YQ ++L +N + +++ +P +IK + E+ + + R + L HL G ++ I N ++ T ++ +R H+ + +AR+ L Sbjct: 113 WSDVLVVGCYQTEESVCPICLEAPILPRMGPCGHVYCYLCVSCYISFENDTSSKQCAVC-GVQLRTNDLRRVRLFSSHVPNVGDTVRLDLMRRHKRSIFPMVASEVQGRLEGS-GREANPASRFLSRLVVAK----QEDIVGLVDTDIATMKAFLAEDQLEEADEERFLIAKRILRK------LVAEKRSMEEATVFTRDEVSFVSNDTTAEDYFFYYQEVSGHDIYLHSINWRCLVE--DFGVSNLPQEIKGKVVEVETYTMSSALRSRYRHLRHLPLGRTFHLIEIQFENPIISAETLLLVSDVLTMRQHRREQKEARERSL 422
BLAST of RING-type domain-containing protein vs. TrEMBL
Match: A0A0K2TF82 (CG12099 CG12099PBlike [Tribolium castaneum] (Fragment) OS=Lepeophtheirus salmonis OX=72036 PE=4 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 1.580e-9 Identity = 41/136 (30.15%), Postives = 65/136 (47.79%), Query Frame = 2 Query: 59 FIQNRCTICVYEKYKFLRNIHD----FSWTSVSKIICFTNDSKVCSICFDKIILARMDRCGHIFCLSCILSVFDVNKSNHAPCPMCKDVEISINSLKRVEFHEQKLPIIGEPIKLSLLVKGQQNVCPRFAHFLTSY 454 ++Q C V + +I+D W ++ ++ TND C IC + +A+M RCGHI+C CIL ++ N CP+C D + LK V IG+ I+L+L+ ++N FA+ T Y Sbjct: 45 YLQANCQFLVKNNRDYSEHINDPDLPLDWEAIERVTLRTNDHPSCPICLYQPKVAKMTRCGHIYCWQCILHYLALSDDNWRKCPIC-DESVYKEDLKSVVTEPFSEHTIGDEIELNLM---RRNRTSMFAYLTTKY 176
BLAST of RING-type domain-containing protein vs. TrEMBL
Match: A0A0K2TF84 (CG12099 CG12099PBlike [Tribolium castaneum] OS=Lepeophtheirus salmonis OX=72036 PE=4 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 2.328e-9 Identity = 41/136 (30.15%), Postives = 65/136 (47.79%), Query Frame = 2 Query: 59 FIQNRCTICVYEKYKFLRNIHD----FSWTSVSKIICFTNDSKVCSICFDKIILARMDRCGHIFCLSCILSVFDVNKSNHAPCPMCKDVEISINSLKRVEFHEQKLPIIGEPIKLSLLVKGQQNVCPRFAHFLTSY 454 ++Q C V + +I+D W ++ ++ TND C IC + +A+M RCGHI+C CIL ++ N CP+C D + LK V IG+ I+L+L+ ++N FA+ T Y Sbjct: 159 YLQANCQFLVKNNRDYSEHINDPDLPLDWEAIERVTLRTNDHPSCPICLYQPKVAKMTRCGHIYCWQCILHYLALSDDNWRKCPIC-DESVYKEDLKSVVTEPFSEHTIGDEIELNLM---RRNRTSMFAYLTTKY 290
BLAST of RING-type domain-containing protein vs. TrEMBL
Match: E9H0B1 (RING-type domain-containing protein OS=Daphnia pulex OX=6669 GN=DAPPUDRAFT_306980 PE=4 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.674e-9 Identity = 36/128 (28.12%), Postives = 64/128 (50.00%), Query Frame = 2 Query: 59 FIQNRCTICVYEKYKFLRNIHD----FSWTSVSKIICFTNDSKVCSICFDKIILARMDRCGHIFCLSCILSVFDVNKSNHAPCPMCKDVEISINSLKRVEFHEQKLPIIGEPIKLSLLVKGQQNVCPR 430 ++Q C V + + D W S+ +I + ++ C IC + A+M RCGHI+C CIL ++ PCP+C DV + I LK V EQ+ +G+ +++ L+ + + ++ P+ Sbjct: 166 YLQANCQFVVKADGDYTVYLADPDLLVPWESIEQIRIWGSEVGSCPICLHPPVAAKMTRCGHIYCWPCILHFLALSDKPSRPCPIC-DVSVRIQDLKSVVALEQRNLKVGDALEMRLMKRDRHSLQPQ 292
BLAST of RING-type domain-containing protein vs. TrEMBL
Match: A0A210PUY3 (RING finger protein 10 OS=Mizuhopecten yessoensis OX=6573 GN=KP79_PYT16827 PE=4 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.883e-9 Identity = 46/158 (29.11%), Postives = 74/158 (46.84%), Query Frame = 2 Query: 59 FIQNRCTICVYEKYKFLRNIHD----FSWTSVSKIICFTNDSKVCSICFDKIILARMDRCGHIFCLSCILSVFDVNKSNHAPCPMCKDV--EISINSLKRVEFHEQKLPIIGEPIKLSLLVKGQQNVCPRFAHFLTSYKDYNLPKL--ENSISKFLSI 508 F+Q C V +K + + H+ W SV I ++++ C IC + A+M RCGHI+C +CIL + + CP+C + + + S++ E H+ K +GE I L L+ + + NV Y LPK N + KF S+ Sbjct: 137 FLQANCQFVVDQKGDYTIHNHNPDTLVDWDSVELIRVQSSETSSCPICLQAPVAAKMTRCGHIYCWACILHYLALGEKTWRKCPICYESIHDKDLRSVESKEVHQYK---VGETITLQLMKRQKGNV-------------YALPKSCEANKLGKFFSV 278
BLAST of RING-type domain-containing protein vs. Ensembl Cavefish
Match: rnf10 (ring finger protein 10 [Source:ZFIN;Acc:ZDB-GENE-030131-2969]) HSP 1 Score: 60.8474 bits (146), Expect = 2.891e-9 Identity = 34/131 (25.95%), Postives = 64/131 (48.85%), Query Frame = 2 Query: 20 KYKMDNKINHRLAFIQNRCTICVYEKYKFLRNIHD----FSWTSVSKIICFTNDSKVCSICFDKIILARMDRCGHIFCLSCILSVFDVNKSNHAPCPMCKDVEISINSLKRVEFHEQKLPIIGEPIKLSLL 400 K+ +K ++ F+Q C V + + + D SW SV ++ ++++ C IC + A + RCGHI+C C+L +++ + + CP+C + S + LK V E + G+ I + L+ Sbjct: 169 KWGHKHKPFNKELFLQANCQFVVIDDQDYQAHFTDPDTLVSWDSVQQVRIYSHEVPTCPICLYPPVAAHITRCGHIYCWPCMLHYLSLSEKSWSKCPICYEAVHSAD-LKSVVAMETHQYVPGDVITMRLM 298
BLAST of RING-type domain-containing protein vs. Ensembl Yeast
Match: MAG2 (Cytoplasmic protein of unknown function; induced in response to mycotoxin patulin; ubiquitinated protein similar to the human ring finger motif protein RNF10; predicted to be involved in repair of alkylated DNA due to interaction with MAG1 [Source:SGD;Acc:S000004419]) HSP 1 Score: 46.9802 bits (110), Expect = 8.176e-6 Identity = 30/103 (29.13%), Postives = 47/103 (45.63%), Query Frame = 2 Query: 179 CSICF-DKIILARMDRCGHIFCLSCILSVFDV------------NKSNHAPCPMCKDVEISINSLKRVEFHE-------QKLPIIGEPIKLSLLVKGQQNVCP 427 CSIC ++ + RM CGHIFCLSC+L+ F + K + CP+C + I +K V + + + P G + L L+ K ++ P Sbjct: 195 CSICLSEEPVAPRMVTCGHIFCLSCLLNFFSIEETVKNKETGYSKKKKYKECPLCGSI-IGPKRVKPVLYEDDFDVTRLNQKPEPGATVHLQLMCKPHGSLLP 296
BLAST of RING-type domain-containing protein vs. Ensembl Medaka
Match: rnf10 (ring finger protein 10 [Source:NCBI gene;Acc:101166478]) HSP 1 Score: 62.003 bits (149), Expect = 1.450e-9 Identity = 34/131 (25.95%), Postives = 63/131 (48.09%), Query Frame = 2 Query: 20 KYKMDNKINHRLAFIQNRCTICVYEKYKFLRNIHD----FSWTSVSKIICFTNDSKVCSICFDKIILARMDRCGHIFCLSCILSVFDVNKSNHAPCPMCKDVEISINSLKRVEFHEQKLPIIGEPIKLSLL 400 K+ NK ++ F+Q C V + + + D +W V ++ +++ C IC + AR+ RCGHIFC C+L ++ + + CP+C + + LK V E + ++G+ I + L+ Sbjct: 165 KWGHKNKPFNKELFLQANCQFVVSDDQDYKAHFTDPDTLVNWDCVQQVRIHSHEVPSCPICLYPPVAARITRCGHIFCWPCMLHYLSLSDKSWSKCPICYEA-VHTADLKSVVAMETRQYVVGDVITMRLM 294
BLAST of RING-type domain-containing protein vs. Planmine SMEST
Match: SMESG000076269.1 (SMESG000076269.1) HSP 1 Score: 900.582 bits (2326), Expect = 0.000e+0 Identity = 527/536 (98.32%), Postives = 528/536 (98.51%), Query Frame = 2 Query: 29 MDNKINHRLAFIQNRCTICVYEKYKFLRNIHDFSWTSVSKIICFTNDSKVCSICFDKIILARMDRCGHIFCLSCILSVFDVNKSNHAPCPMCKDVEISINSLKRVEFHEQKLPIIGEPIKLSLLVKGQQNVCPRFAHFLTSYKDYNLPKLENSISKFLSIVTEKDFRSQQDIIDDLNXXXXXXXXXXXXXXFPRXXXXXXXXXXXXXXXHFQDEIKVINKNEIDENCEIFEDNFNLIEYKNMKEKFELFYQAEGYRFVFLDQLNQKQILDKSQHTWKVVPVQIKSTIREIREEFVDNEFLMRTKLSHLFRGVKVTIVTIDLPNALLEPITGGNLRILRSHQEQIYKARKEDLDMXXXXXXXXXXXXSLPPRQRVLTTVNTENAQYSRLFDMIAEGFNTCTLGIECLVPDDDYPHAQDCEHYASAKHHLSPLETAPTDEKFLGILRMKLNVFHP-XXXXXXXNEALQPAVVTQCXXXXXXXXXXXXXXXXERLSSDELSLIKEANRIAPYIVPRKPXXXXXXXXXXXXXXXXMKAAS 1633 MDNKINHRLAFIQNRCTICVYEKYKFLRNIHDFSWTSVSKIICFTNDSKVCSICFDKIILARMDRCGHIFCLSCILSVFDVNKSNHAPCPMCKDVEISINSLKRVEFHEQKLPIIGEPIKLSLLVKGQQNVCPRFAHFLTSYKDYNLPKLENSISKFLSIVTEKDFRSQQDIIDDLNLIKCKLKQKSKLNKFPRNNLEKLLLNLKSELKHFQDEIKVINKNEIDENCEIFEDNFNLIEYKNMKEKFELFYQAEGYRFVFLDQLNQKQILDKSQ TWKVVPVQIKSTIREIREEFVDNEF+MRTKLSHLFRGVKVTIVTIDLPNALLEPITGGNLRILRSHQEQIYKARKEDLDMRERIAKRAAERRSLPPRQRVLTTVNTENAQYSRLFDMIAEGFNTCTLGIECLVPDDDYPHAQDCEHYASAKHHLSPLETAPTDEKFLGILRMKLNVFHP AAAAADNEALQPAVVTQCPSPAAA V LLHAPPERLS DELSLIKEANRIAPYIVPRK KSQNQQKKLRKLQKQSMKAAS Sbjct: 1 MDNKINHRLAFIQNRCTICVYEKYKFLRNIHDFSWTSVSKIICFTNDSKVCSICFDKIILARMDRCGHIFCLSCILSVFDVNKSNHAPCPMCKDVEISINSLKRVEFHEQKLPIIGEPIKLSLLVKGQQNVCPRFAHFLTSYKDYNLPKLENSISKFLSIVTEKDFRSQQDIIDDLNLIKCKLKQKSKLNKFPRNNLEKLLLNLKSELKHFQDEIKVINKNEIDENCEIFEDNFNLIEYKNMKEKFELFYQAEGYRFVFLDQLNQKQILDKSQQTWKVVPVQIKSTIREIREEFVDNEFVMRTKLSHLFRGVKVTIVTIDLPNALLEPITGGNLRILRSHQEQIYKARKEDLDMRERIAKRAAERRSLPPRQRVLTTVNTENAQYSRLFDMIAEGFNTCTLGIECLVPDDDYPHAQDCEHYASAKHHLSPLETAPTDEKFLGILRMKLNVFHPDAAAAAADNEALQPAVVTQCPSPAAAVVPLLLHAPPERLSLDELSLIKEANRIAPYIVPRKLKSQNQQKKLRKLQKQSMKAAS 536
BLAST of RING-type domain-containing protein vs. Planmine SMEST
Match: SMESG000016827.1 (SMESG000016827.1) HSP 1 Score: 58.151 bits (139), Expect = 1.396e-8 Identity = 31/114 (27.19%), Postives = 57/114 (50.00%), Query Frame = 2 Query: 101 KFLRNIHDFS-----WTSVSKIICFTNDSKVCSICFDKIILARMDRCGHIFCLSCILSVFDVNKSNHAPCPMCKDVEISINSLKRVEFHEQKLPIIGEPIKLSLLVKGQQNVCP 427 K L++ +DF W S+ +I + + +C IC D ++R D+CGH++C C+ + C +C + EI + +KR F E+ +G+ I L L+ + + + P Sbjct: 83 KCLKSEYDFDDIYSQWDSIIQINFYKTEDIMCPICMDAPKVSRTDKCGHVYCFPCLNKFLSYENGYYKKCALC-NQEIDLKRVKRAAFIERFSLNVGDNISLLLMRRSKSDSFP 195 The following BLAST results are available for this feature:
BLAST of RING-type domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 3
BLAST of RING-type domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of RING-type domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 2
BLAST of RING-type domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of RING-type domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 2
BLAST of RING-type domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 4
BLAST of RING-type domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of RING-type domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of RING-type domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 1
BLAST of RING-type domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of RING-type domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 1
BLAST of RING-type domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of RING-type domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 1
BLAST of RING-type domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 2
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30031551 ID=SMED30031551|Name=RING-type domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1885bpback to top protein sequence of SMED30031551-orf-1 >SMED30031551-orf-1 ID=SMED30031551-orf-1|Name=SMED30031551-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=536bp MDNKINHRLAFIQNRCTICVYEKYKFLRNIHDFSWTSVSKIICFTNDSKVback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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