Chromosome 19 open reading frame 10
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30031546 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 3
Homology
BLAST of Chromosome 19 open reading frame 10 vs. Ensembl Human
Match: MYDGF (myeloid derived growth factor [Source:HGNC Symbol;Acc:HGNC:16948]) HSP 1 Score: 71.633 bits (174), Expect = 1.300e-14 Identity = 42/135 (31.11%), Postives = 74/135 (54.81%), Query Frame = 2 Query: 164 DSASIDFQVTPGGIEHSAVH---TRDGAKCTFTYICQGGTNENWILAITKVKEQNTYGCYIQRKGGRSHSYIFFQKFSLSVTG-NVEF---HNGQAFKSD-DTKLAPAEYKVDKSSKSISQVDGKFGSQLNRVII 544 + ++ F V PGG+ HS H D C FTY QGGTNE W +++ ++ + C I R G+ SY++F +F V G +E+ ++ AF+ + D L E++V K+ +++ G F ++L++++I Sbjct: 34 EPTTVAFDVRPGGVVHSFSHNVGPGDKYTCMFTYASQGGTNEQWQMSLGTSEDHQHFTCTIWRPQGK--SYLYFTQFKAEVRGAEIEYAMAYSKAAFERESDVPLKTEEFEVTKT--AVAHRPGAFKAELSKLVI 164
BLAST of Chromosome 19 open reading frame 10 vs. Ensembl Human
Match: MYDGF (myeloid derived growth factor [Source:HGNC Symbol;Acc:HGNC:16948]) HSP 1 Score: 62.3882 bits (150), Expect = 4.162e-11 Identity = 38/116 (32.76%), Postives = 62/116 (53.45%), Query Frame = 2 Query: 164 DSASIDFQVTPGGIEHSAVH---TRDGAKCTFTYICQGGTNENWILAITKVKEQNTYGCYIQRKGGRSHSYIFFQKFSLSVTG-NVEF---HNGQAFKSD-DTKLAPAEYKVDKSS 487 + ++ F V PGG+ HS H D C FTY QGGTNE W +++ ++ + C I R G+ SY++F +F V G +E+ ++ AF+ + D L E++V K++ Sbjct: 34 EPTTVAFDVRPGGVVHSFSHNVGPGDKYTCMFTYASQGGTNEQWQMSLGTSEDHQHFTCTIWRPQGK--SYLYFTQFKAEVRGAEIEYAMAYSKAAFERESDVPLKTEEFEVTKTA 147
BLAST of Chromosome 19 open reading frame 10 vs. Ensembl Zebrafish
Match: mydgf (myeloid-derived growth factor [Source:ZFIN;Acc:ZDB-GENE-040718-183]) HSP 1 Score: 82.8037 bits (203), Expect = 5.411e-19 Identity = 45/135 (33.33%), Postives = 75/135 (55.56%), Query Frame = 2 Query: 155 SSEDSASIDFQVTPGGIEHSAVHTRDGAKCTFTYICQGGTNENWILAITKVKEQNTYGCYIQRKGGRSHSYIFFQKFSLSVTG-NVEFHNGQAFKS----DDTKLAPAEYKVDKSSKSISQVDGKFGSQLNRVII 544 S+E + ++DF V PGG+ + KCTFTY CQGGTNE W +++ ++ + C + R G+ SY+FF +F + G +E+ + + D L EY V +S +++Q DGKF S+L+++ + Sbjct: 25 SAERTKTLDFDVKPGGVVQTFSAKLKKYKCTFTYACQGGTNEQWQMSVGLSDDEQMFSCSVWRPQGK--SYLFFTQFKAEIKGAKIEYATAYSQTAVGGQRDVALKEEEYIVSES--AVTQRDGKFHSELSKLTV 155
BLAST of Chromosome 19 open reading frame 10 vs. Ensembl Xenopus
Match: yes1 (YES proto-oncogene 1, Src family tyrosine kinase [Source:Xenbase;Acc:XB-GENE-495082]) HSP 1 Score: 77.7962 bits (190), Expect = 5.813e-17 Identity = 49/133 (36.84%), Postives = 69/133 (51.88%), Query Frame = 2 Query: 161 EDSASIDFQVTPGGIEHSAVHTRDGAKCTFTYICQGGTNENWILAITKVKEQNTYGCYIQRKGGRSHSYIFFQKFSLSVT-GNVEFHNG--QAFK--SDDTKLAPAEYKVDKSSKSISQVDGKFGSQLNRVII 544 E S++ +F V PGG++HS CTFTY QGGTNE W +++ + + C I R G+ SY+FF F VT G +EF QA S D KL +EY D + +S G F S L ++++ Sbjct: 21 EKSSTEEFDVRPGGLQHSFTSKLGDYACTFTYAAQGGTNEKWHMSVGLSDDNQHFSCSIWRPQGK--SYLFFTGFKAEVTGGKIEFSEAYSQASSDGSSDVKLKSSEY--DVTDNVVSHRPGSFSSSLCKLVL 149
BLAST of Chromosome 19 open reading frame 10 vs. Ensembl Mouse
Match: Mydgf (myeloid derived growth factor [Source:MGI Symbol;Acc:MGI:2156020]) HSP 1 Score: 70.4774 bits (171), Expect = 2.314e-14 Identity = 42/135 (31.11%), Postives = 75/135 (55.56%), Query Frame = 2 Query: 164 DSASIDFQVTPGGIEHS---AVHTRDGAKCTFTYICQGGTNENWILAITKVKEQNTYGCYIQRKGGRSHSYIFFQKFSLSVTG-NVEF---HNGQAFKSD-DTKLAPAEYKVDKSSKSISQVDGKFGSQLNRVII 544 + ++ F V PGG+ HS V + CTFTY QGGTNE W +++ ++ + C I R G+ SY++F +F + G +E+ ++ AF+ + D L E++V K+ ++S G F ++L++++I Sbjct: 27 EPTTVPFDVRPGGVVHSFSQDVGPGNKFTCTFTYASQGGTNEQWQMSLGTSEDSQHFTCTIWRPQGK--SYLYFTQFKAELRGAEIEYAMAYSKAAFERESDVPLKSEEFEVTKT--AVSHRPGAFKAELSKLVI 157
BLAST of Chromosome 19 open reading frame 10 vs. UniProt/SwissProt
Match: sp|Q969H8|MYDGF_HUMAN (Myeloid-derived growth factor OS=Homo sapiens OX=9606 GN=MYDGF PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 6.244e-14 Identity = 42/135 (31.11%), Postives = 74/135 (54.81%), Query Frame = 2 Query: 164 DSASIDFQVTPGGIEHSAVH---TRDGAKCTFTYICQGGTNENWILAITKVKEQNTYGCYIQRKGGRSHSYIFFQKFSLSVTG-NVEF---HNGQAFKSD-DTKLAPAEYKVDKSSKSISQVDGKFGSQLNRVII 544 + ++ F V PGG+ HS H D C FTY QGGTNE W +++ ++ + C I R G+ SY++F +F V G +E+ ++ AF+ + D L E++V K+ +++ G F ++L++++I Sbjct: 34 EPTTVAFDVRPGGVVHSFSHNVGPGDKYTCMFTYASQGGTNEQWQMSLGTSEDHQHFTCTIWRPQGK--SYLYFTQFKAEVRGAEIEYAMAYSKAAFERESDVPLKTEEFEVTKT--AVAHRPGAFKAELSKLVI 164
BLAST of Chromosome 19 open reading frame 10 vs. UniProt/SwissProt
Match: sp|Q9CPT4|MYDGF_MOUSE (Myeloid-derived growth factor OS=Mus musculus OX=10090 GN=Mydgf PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.618e-13 Identity = 42/135 (31.11%), Postives = 75/135 (55.56%), Query Frame = 2 Query: 164 DSASIDFQVTPGGIEHS---AVHTRDGAKCTFTYICQGGTNENWILAITKVKEQNTYGCYIQRKGGRSHSYIFFQKFSLSVTG-NVEF---HNGQAFKSD-DTKLAPAEYKVDKSSKSISQVDGKFGSQLNRVII 544 + ++ F V PGG+ HS V + CTFTY QGGTNE W +++ ++ + C I R G+ SY++F +F + G +E+ ++ AF+ + D L E++V K+ ++S G F ++L++++I Sbjct: 27 EPTTVPFDVRPGGVVHSFSQDVGPGNKFTCTFTYASQGGTNEQWQMSLGTSEDSQHFTCTIWRPQGK--SYLYFTQFKAELRGAEIEYAMAYSKAAFERESDVPLKSEEFEVTKT--AVSHRPGAFKAELSKLVI 157
BLAST of Chromosome 19 open reading frame 10 vs. UniProt/SwissProt
Match: sp|P62248|MYDGF_BOVIN (Myeloid-derived growth factor OS=Bos taurus OX=9913 GN=MYDGF PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 2.151e-13 Identity = 43/136 (31.62%), Postives = 69/136 (50.74%), Query Frame = 2 Query: 164 DSASIDFQVTPGGIEHS---AVHTRDGAKCTFTYICQGGTNENWILAITKVKEQNTYGCYIQRKGGRSHSYIFFQKFSLSVTGNVEFHNGQAF------KSDDTKLAPAEYKVDKSSKSISQVDGKFGSQLNRVII 544 + ++ F V PGG+ HS V D C FTY QGGTNE W +++ ++ + C I R G+ SY++F +F V G E G A+ K D L E++V K+ ++ G F ++L++++I Sbjct: 35 EPTTVAFDVRPGGVVHSFSQNVGPGDKYTCVFTYASQGGTNEKWQMSLGTSEDHQHFTCTIWRPQGK--SYLYFTQFKAEVRG-AEIEYGMAYSKAAFEKESDVPLKNEEFEVTKT--AVFHRPGAFKAELSKLVI 165
BLAST of Chromosome 19 open reading frame 10 vs. UniProt/SwissProt
Match: sp|Q54XC4|MYDGF_DICDI (Myeloid-derived growth factor homolog OS=Dictyostelium discoideum OX=44689 GN=DDB_G0279047 PE=3 SV=2) HSP 1 Score: 48.521 bits (114), Expect = 7.716e-6 Identity = 28/81 (34.57%), Postives = 42/81 (51.85%), Query Frame = 2 Query: 146 NSVSSEDSASIDFQVTPGGIEHSAVHTRDGAKCTFTYICQGGTNENWILAITKVKEQNTYGCYIQRKGGRSHSYIFFQKFS 388 NS+S E +F + P G + + KC F++ GGTNENW + +T E C+I R + SY+FF++FS Sbjct: 19 NSLSEEIDK--EFNIKPEGNLDTVELVLENYKCIFSFAATGGTNENWKIFLT--TENGVATCFIGRP--KPISYLFFKQFS 93
BLAST of Chromosome 19 open reading frame 10 vs. TrEMBL
Match: A0A267DPQ2 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig006048g1 PE=4 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 4.016e-35 Identity = 60/132 (45.45%), Postives = 86/132 (65.15%), Query Frame = 2 Query: 182 FQVTPGGIEHSAVHTRDGAKCTFTYICQGGTNENWILAITKVKEQNTYGCYIQRKGGRSHSYIFFQKFSLSVTGNVEFHNGQAFKSDDTKLAPAEYKVDKSSKSISQVDGKFGSQLNRVIIEYTVFGKSKEL 577 F V PGG++H RDG KCTFTY+CQGGTNE W + IT++ E TYGC ++R+ G SY+FFQ F+L++ G E H AF + +L P E+K DK++ + D KFG++L R+ +E++ GK +L Sbjct: 36 FDVKPGGVQHEFSMERDGIKCTFTYVCQGGTNEKWRMLITQIHEVGTYGCVVERESGT--SYLFFQSFTLALLGEAEAHQAHAFGNGGRELKPEEFKFDKAAAKVQNSD-KFGAELARLALEFSATGKRSDL 164
BLAST of Chromosome 19 open reading frame 10 vs. TrEMBL
Match: A0A1I8H6P0 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig016417g1 PE=4 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 6.036e-35 Identity = 60/132 (45.45%), Postives = 86/132 (65.15%), Query Frame = 2 Query: 182 FQVTPGGIEHSAVHTRDGAKCTFTYICQGGTNENWILAITKVKEQNTYGCYIQRKGGRSHSYIFFQKFSLSVTGNVEFHNGQAFKSDDTKLAPAEYKVDKSSKSISQVDGKFGSQLNRVIIEYTVFGKSKEL 577 F V PGG++H RDG KCTFTY+CQGGTNE W + IT++ E TYGC ++R+ G SY+FFQ F+L++ G E H AF + +L P E+K DK++ + D KFG++L R+ +E++ GK +L Sbjct: 36 FDVKPGGVQHEFSMERDGIKCTFTYMCQGGTNEKWRMLITQIHEVGTYGCVVERESGT--SYLFFQSFTLALQGEAEAHQAHAFGNGGRELKPEEFKFDKAAAKVQNSD-KFGAELARLALEFSATGKRSDL 164
BLAST of Chromosome 19 open reading frame 10 vs. TrEMBL
Match: A0A5K4F7H2 (Uncharacterized protein OS=Schistosoma mansoni OX=6183 PE=4 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 6.468e-30 Identity = 60/140 (42.86%), Postives = 89/140 (63.57%), Query Frame = 2 Query: 164 DSASI--DFQVTPGGIEHSAVHTRDGAKCTFTYICQGGTNENWILAITKVKEQNTYGCYIQRKGGRSHSYIFFQKFSLSVTGNVEFHNGQAFKSDDTKLAPAEYKVDKSSKSISQVDGKFGSQLNRVIIEYTVFGKSKEL 577 DS+SI +F V PGG ++S+ RDG KCTFTY CQGGTNE W + ++K+++ YGC ++R G ++ SYI+FQ F L VT VE + AF +++ L+ EY +K+ + +S V GKF + L R+ +E+ EL Sbjct: 18 DSSSIKKEFSVQPGGKKYSSTIERDGIKCTFTYECQGGTNEKWHMILSKIRDDKGYGCVVERSGSQT-SYIYFQSFKLDVTPPVEALSASAFGNNNQPLSDEEYYFNKNERYVSHVSGKFKAALTRLSLEFVSTPMKPEL 156
BLAST of Chromosome 19 open reading frame 10 vs. TrEMBL
Match: A0A095ACH5 (UPF0556 protein C19orf10-like protein (Fragment) OS=Schistosoma haematobium OX=6185 GN=MS3_11207 PE=4 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 2.669e-29 Identity = 60/131 (45.80%), Postives = 84/131 (64.12%), Query Frame = 2 Query: 164 DSASI--DFQVTPGGIEHSAVHTRDGAKCTFTYICQGGTNENWILAITKVKEQNTYGCYIQRKGGRSHSYIFFQKFSLSVTGNVEFHNGQAFKSDDTKLAPAEYKVDKSSKSISQVDGKFGSQLNRVIIEY 550 D +SI +F V PGG ++S+ RDG KCTFTY CQGGTNE W + ++K+++ N YGC ++R G ++ SYIFFQ F L VT VE AF + + LA EY +K+ +S V GKF + L R+ +E+ Sbjct: 18 DGSSIKKEFSVQPGGKKYSSTIERDGIKCTFTYECQGGTNEKWHMILSKIRDDNGYGCVVERSGSQT-SYIFFQSFKLDVTPPVEALTASAFGNGNQPLAAEEYYFNKNECFVSHVGGKFRAALTRLSLEF 147
BLAST of Chromosome 19 open reading frame 10 vs. TrEMBL
Match: A0A5K3FQC7 (Uncharacterized protein OS=Mesocestoides corti OX=53468 PE=4 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 9.106e-24 Identity = 61/149 (40.94%), Postives = 81/149 (54.36%), Query Frame = 2 Query: 146 NSVSSEDSASIDFQ-----VTPGGIEHSAVHTRDGAKCTFTYICQGGTNENWILAITKVKEQNTYGCYIQRKGGRSHSYIFFQKFSLSVTGNVEFHNGQAFKSDDTKLAPAEYKVDKSSKSISQVDGKFGSQLNRVIIEYTVFGKSKEL 577 +SV S D+AS + + V PGG+ + G CTF Y CQGGT E W L+I ++Q+ Y C++QR G S SY+FFQKF ++V +G AF L PAEY VD SIS V GKF L V +E+ + + EL Sbjct: 13 HSVLSSDTASKNIKIKEISVKPGGVTRTESIEGFGVVCTFEYSCQGGTGEGWHLSIVYSEKQDRYVCHVQRTG-NSISYLFFQKFVMTVADPAAMTSGVAFDDKSKLLDPAEYFVDTKRNSISHVGGKFKGHLGHVSLEFEMKSRRPEL 160
BLAST of Chromosome 19 open reading frame 10 vs. Ensembl Cavefish
Match: mydgf (myeloid derived growth factor [Source:NCBI gene;Acc:103036454]) HSP 1 Score: 73.559 bits (179), Expect = 1.281e-15 Identity = 43/144 (29.86%), Postives = 76/144 (52.78%), Query Frame = 2 Query: 155 SSEDSASIDFQVTPGGIEHSAVHTRDGAKCTFTYICQGGTNENWILAITKVKEQNTYGCYIQRKGGRSHSYIFFQKFSLSVTG-NVEFHNGQAFKS----DDTKLAPAEYKVDKSSKSISQVDGKFGSQLNRVIIEYTVFGKSK 571 S E + ++DF V PGG+ HS +C FTY QGGTNE W +++ + + C + R G+ SY+FF +F + G +E+ + + + D L EY V + +++ DGKF ++L+++ T+ G+++ Sbjct: 30 SGESAKTVDFNVKPGGVVHSFSEKIKEYECIFTYASQGGTNEQWQMSVGLSDDDRLFSCSVWRPQGK--SYLFFTQFKAEIKGAKIEYASAYSQAAVGGQKDVPLKDEEYAVGDT--TVTHKDGKFRAELSKL----TLIGRTR 165
BLAST of Chromosome 19 open reading frame 10 vs. Ensembl Medaka
Match: mydgf (myeloid derived growth factor [Source:NCBI gene;Acc:101166110]) HSP 1 Score: 74.7146 bits (182), Expect = 2.176e-16 Identity = 40/127 (31.50%), Postives = 69/127 (54.33%), Query Frame = 2 Query: 173 SIDFQVTPGGIEHSAVHTRDGAKCTFTYICQGGTNENWILAITKVKEQNTYGCYIQRKGGRSHSYIFFQKFSLSVTGN-VEFHNG----QAFKSDDTKLAPAEYKVDKSSKSISQVDGKFGSQLNRV 538 +++F V PGG+ HS +CTFTY QGGTNE W++++ + + + C + +G SY+FF +F + G +E+ N A D L P E+ V ++S + +G+F +QL+++ Sbjct: 4 TVEFNVKPGGVVHSFTEGVRDYECTFTYASQGGTNEQWLMSVGLSDDDSLFSCSVWPQG---KSYLFFTQFKAELKGTRIEYANAYSQIAAGGQSDVPLKPEEFTV---AESTTHKEGRFNAQLSKL 124
BLAST of Chromosome 19 open reading frame 10 vs. Ensembl Medaka
Match: mydgf (myeloid derived growth factor [Source:NCBI gene;Acc:101166110]) HSP 1 Score: 74.7146 bits (182), Expect = 9.694e-16 Identity = 40/116 (34.48%), Postives = 63/116 (54.31%), Query Frame = 2 Query: 155 SSEDSASIDFQVTPGGIEHSAVHTRDGAKCTFTYICQGGTNENWILAITKVKEQNTYGCYIQRKGGRSHSYIFFQKFSLSVTGN-VEFHNG----QAFKSDDTKLAPAEYKVDKSS 487 SSE + +++F V PGG+ HS +CTFTY QGGTNE W++++ + + + C + R G+ SY+FF +F + G +E+ N A D L P E+ V +S+ Sbjct: 30 SSEKTKTVEFNVKPGGVVHSFTEGVRDYECTFTYASQGGTNEQWLMSVGLSDDDSLFSCSVWRPQGK--SYLFFTQFKAELKGTRIEYANAYSQIAAGGQSDVPLKPEEFTVAEST 143
BLAST of Chromosome 19 open reading frame 10 vs. Planmine SMEST
Match: SMESG000021061.1 (SMESG000021061.1) HSP 1 Score: 301.982 bits (772), Expect = 1.206e-104 Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 2 Query: 140 YLNSVSSEDSASIDFQVTPGGIEHSAVHTRDGAKCTFTYICQGGTNENWILAITKVKEQNTYGCYIQRKGGRSHSYIFFQKFSLSVTGNVEFHNGQAFKSDDTKLAPAEYKVDKSSKSISQVDGKFGSQLNRVIIEYTVFGKSKEL 577 YLNSVSSEDSASIDFQVTPGGIEHSAVHTRDGAKCTFTYICQGGTNENWILAITKVKEQNTYGCYIQRKGGRSHSYIFFQKFSLSVTGNVEFHNGQAFKSDDTKLAPAEYKVDKSSKSISQVDGKFGSQLNRVIIEYTVFGKSKEL Sbjct: 11 YLNSVSSEDSASIDFQVTPGGIEHSAVHTRDGAKCTFTYICQGGTNENWILAITKVKEQNTYGCYIQRKGGRSHSYIFFQKFSLSVTGNVEFHNGQAFKSDDTKLAPAEYKVDKSSKSISQVDGKFGSQLNRVIIEYTVFGKSKEL 156 The following BLAST results are available for this feature:
BLAST of Chromosome 19 open reading frame 10 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 2
BLAST of Chromosome 19 open reading frame 10 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of Chromosome 19 open reading frame 10 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of Chromosome 19 open reading frame 10 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 1
BLAST of Chromosome 19 open reading frame 10 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 1
BLAST of Chromosome 19 open reading frame 10 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 1
BLAST of Chromosome 19 open reading frame 10 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 4
BLAST of Chromosome 19 open reading frame 10 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Chromosome 19 open reading frame 10 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 1
BLAST of Chromosome 19 open reading frame 10 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of Chromosome 19 open reading frame 10 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Chromosome 19 open reading frame 10 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of Chromosome 19 open reading frame 10 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 2
BLAST of Chromosome 19 open reading frame 10 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 1
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30031546 ID=SMED30031546|Name=Chromosome 19 open reading frame 10|organism=Schmidtea mediterranea sexual|type=transcript|length=877bpback to top protein sequence of SMED30031546-orf-1 >SMED30031546-orf-1 ID=SMED30031546-orf-1|Name=SMED30031546-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=157bp MNFLFFIFIIYLNSVSSEDSASIDFQVTPGGIEHSAVHTRDGAKCTFTYIback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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