SMED30031545

Overview
NameSMED30031545
Smed IDSMED30031545
Length (bp)2362
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30031545 (SMED30031545) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30031545 (SMED30031545) in cells (dots) of each of the 12 neoblast clusters.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30031545

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 1

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
parapharyngeal regionSMED30031545 SmedASXL_054847SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30031545 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.005277:13256..15617 -11765
Homology
[Close]
BLAST of SMED30031545 vs. Planmine SMEST
Match: SMESG000029191.1 (SMESG000029191.1)

HSP 1 Score: 940.258 bits (2429), Expect = 0.000e+0
Identity = 490/517 (94.78%), Postives = 499/517 (96.52%), Query Frame = 1 
Query:   31 MKVTDDVTQPEKSNLFNLDDARFNHLIERLGNSLTREFNNIAENLMKNIFASKDFYLILQNALQEFDSTLNNRLASRGFNASIAAGSDELSRSFSTNNNCYPSDSKAYELNPCDESALISRGLPKSNFSEHLNRNVLFYEQSSNAQGNCHEIVNYTSLNNSKLXXXXXXXXXXXXXXXXXCDLFNVNLYTRVRILSLSERSVLCDKFPYISNLLKERESFKKLKLVKVALYRDKISITKILNIQYLGSLFYRNGNICAYLVPSPDQLKNSLDQSDLTKIKSKLNNNRYKVLVDLDEDTTPDINKIKLSVNKPSNVYRKHKRKRAPKFRKNDSTQTYSLKKVIKETTRCLKKYISTGTSPVLTTSIATQTDNFVCNIISDDDHKSDSLVSPSRQICSSESDIRDSLALVPYRPNNVSQSDEFNSRKTRGNYQSSELSNDCMQHTDLIGGGSTDLNFQFKILNNKGYDMICASESCYIKLSNTVANNKSFINHYKKVHNMVFSIRQFSYLCFCGMIINR 1581
            MKVTDDVTQPEKSNLFNLDDARFNHLIERLGNSLTREFNNIAENLMKNIFASKDFYLILQNALQEFDSTLNNRLASRGFNASIAAGSDELSRSFSTNNNCYPSDSKAYELNPC+ESALISRGLPKSNFSEHLNRNVLFYEQSSNAQGNCHEIVNYTSLNNSKLISFKNDFNNFKIINKENCDLFN NLYTRVRILSLSERSVLCDKFPYISNLLKERESFKKLKLVKVALYRDKISITKILNIQYLGSLFYRNGNICAYLVPSPDQLKNSLDQSDLTKIKSKLNNNRYKVLVDLDEDTTPDINKIKLSVNKPSNVYRKHKRKRAPKFRKNDSTQTYSLKKVIKETTRCLKKYISTGTSPVLTTSIATQTDNFVCNIISDDDHKSDSLVSPSRQICSSESDIRDSLALVPYRPNNVSQSDEFNSRKTRGNYQSSELSNDCMQHTDLIGGGSTDLNFQFKILNNKGYDMICASESCYIKLSNTVANNK   NH   +      I++F+    C +I+++
Sbjct:    1 MKVTDDVTQPEKSNLFNLDDARFNHLIERLGNSLTREFNNIAENLMKNIFASKDFYLILQNALQEFDSTLNNRLASRGFNASIAAGSDELSRSFSTNNNCYPSDSKAYELNPCNESALISRGLPKSNFSEHLNRNVLFYEQSSNAQGNCHEIVNYTSLNNSKLISFKNDFNNFKIINKENCDLFNENLYTRVRILSLSERSVLCDKFPYISNLLKERESFKKLKLVKVALYRDKISITKILNIQYLGSLFYRNGNICAYLVPSPDQLKNSLDQSDLTKIKSKLNNNRYKVLVDLDEDTTPDINKIKLSVNKPSNVYRKHKRKRAPKFRKNDSTQTYSLKKVIKETTRCLKKYISTGTSPVLTTSIATQTDNFVCNIISDDDHKSDSLVSPSRQICSSESDIRDSLALVPYRPNNVSQSDEFNSRKTRGNYQSSELSNDCMQHTDLIGGGSTDLNFQFKILNNKGYDMICASESCYIKLSNTVANNK---NHLSTI------IKKFT---ICDLILSK 505
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BLAST of SMED30031545 vs. Planmine SMEST
Match: SMESG000029188.1 (SMESG000029188.1)

HSP 1 Score: 834.713 bits (2155), Expect = 0.000e+0
Identity = 500/779 (64.18%), Postives = 571/779 (73.30%), Query Frame = 1 
Query:   40 TDDVTQPEKSNLFNLDDARFNHLIERLGNSLTREFNNIAENLMKNIFASKDFYLILQNALQEFDSTL--NNRLASRGFNASIAAGSDELSRSFSTNNNCYPSDSKAYELNPCDESALISRGLPKSNFSEHLNRNVLFYEQSSNAQGNCHEIVNYTSLNNSKLXXXXXXXXXXXXXXXXXCDLFNVNLYTRVRILSLSERSVLCDKFPYISNLLKERESFKKLKLVKVALYRDKISITKILNIQYLGSLFYRNGNICAYLVPSPDQLKNSLDQSDLTKIKSKLNNNRYKVLVDLDEDTTPDINKIKLSVNKPSNVYRKHKRKRAPKFRKNDSTQTYSLKKVIKETTRCLKKYISTGTSPVLTTSIATQTDNFVCNIISDDDH-KSDSLVS--PSRQICSSESDIRDSLALVPYRPNNVSQSDEFNSRKTRGNYQSSELSNDCMQHTDLIGGGSTDLNFQFKILNNKGYDMICASESCYIKLSNTVANNKSFINHYKKVHNMVFSIRQFSYLCFCGMIINRPELKSHIQMHNLSSCSENVVDPISLHVENEDLNSAAPSQ*LSDSAIEIFFRSQIIDRSDKIIRYISPHSAIALIHHNMSSFFNIFPFECFDRWDYVFWPIHWNGNHWLLYISDNINKSSLLLDPLSHNLSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPLQNNSFDCGVFICQFALDYSVSTMPIIFRTPDVVYIRKTIFDTILFNINCNDDLNKDNKTNFVNKLYQRNKIPYFKMNIIKQKPLIHPLLIQ 2361
             DD TQ E +NLFNLDDARFNHLI+RL N LT EFN IA NLMKNIF+S DF LILQNALQEFD+T   N R AS G+ +S AAG DE  R+ + NNN YPS SK+Y+LNP DE+ LISRGL K N SEHLNRNV+ Y+QS+ AQGNC+EI+N T LN    IS KN F+NFK  N  N D  NVN+YTRVRILSLSERSVL DKFPYISNLLKERES KKLKLVK ALYRDKISITKILNI+ LGSLFYRNGNICAYLVPS DQLKNSLDQSDLTKIKSKLNNNRYKVLVDLDED T D NKIK SVNKPSN+YRK KRKRAPKFRKNDSTQT+SLK+V K  T  + K IST TS V T SI TQT+   C   SDD+   S  L+   P   +C  E  +  +L    Y+ ++  QS++ NS+ T+ + Q SE SN+C   +DLIGG +TD +F FKILNN  +D+ICAS +CY KL NT +NNK+F  HY KVH    SI+QF YLCFCG+IINR +LK H  MH                                    E  +RS      D++IRYISPH AIALIHHNMSSFFN FPFECFDRWDYVFWPIHWNGNHWLLYI+DNINKSSLLLDPL+H LSKEQLE Q+LLTNL+NKINNFIPNINND IVNNT NNHPLQNNS+DCGVFICQFA DY+ ST PI+F+ P+V  IR TI   I   +N  ++L  + K+    KLY+RN+   FK+ + K KPLIHPLL+Q
Sbjct:    3 ADDFTQVENTNLFNLDDARFNHLIDRLSNFLTHEFNIIATNLMKNIFSSNDFNLILQNALQEFDATCISNYRRASSGYISSFAAGFDEHLRTSTINNNFYPSGSKSYDLNPYDETTLISRGLSKRNLSEHLNRNVVSYDQSAKAQGNCNEIINIT-LNEPNCISSKNGFDNFKFSNNVNNDFNNVNIYTRVRILSLSERSVLYDKFPYISNLLKERESIKKLKLVKFALYRDKISITKILNIKNLGSLFYRNGNICAYLVPSSDQLKNSLDQSDLTKIKSKLNNNRYKVLVDLDEDITLDFNKIKRSVNKPSNIYRKQKRKRAPKFRKNDSTQTFSLKRVFKNATSKITKDISTNTSLVSTISIETQTETLDC--CSDDNECLSGPLIGDIPDSCLCIDERKL--ALTADYYQQSSSPQSEDLNSKTTQEDCQPSEFSNECDLQSDLIGGSATDNDFHFKILNNNTFDLICASHTCYTKLKNTTSNNKAFTKHYLKVHKKAVSIKQFKYLCFCGVIINRSQLKVHTNMH------------------------------------EKNYRS------DRVIRYISPHPAIALIHHNMSSFFNTFPFECFDRWDYVFWPIHWNGNHWLLYIADNINKSSLLLDPLTHCLSKEQLEFQSLLTNLVNKINNFIPNINNDNIVNNTNNNHPLQNNSYDCGVFICQFAFDYATSTTPIVFKIPEVYKIRNTISQIISTKLNNENELINEIKSGNRPKLYKRNRSSNFKIKVTKAKPLIHPLLVQ 734
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BLAST of SMED30031545 vs. Planmine SMEST
Match: SMESG000074843.1 (SMESG000074843.1)

HSP 1 Score: 397.512 bits (1020), Expect = 4.961e-125
Identity = 191/198 (96.46%), Postives = 192/198 (96.97%), Query Frame = 1 
Query: 1090 STGTSPVLTTSIATQTDNFVCNIISDDDHKSDSLVSPSRQICSSESDIRDSLALVPYRPNNVSQSDEFNSRKTRGNYQSSELSNDCMQHTDLIGGGSTDLNFQFKILNNKGYDMICASESCYIKLSNTVANNKSFINHYKKVHNMVFSIRQFSYLCFCGMIINRPELKSHIQMHNLSSCSENVVDPISLHVENEDLNS 1683
            + GTSPVLTTSIATQTDNFVCNIISDDDHKSDSLVSPSRQICSSESDIRDSLALVPYRPNNVSQSDEFNSRKTRGNYQSSELSNDCMQHTDLIGGGSTDLNFQFKILNNKGYDMICASESCYIKLSNTVANNKSFINHYKKVHNMVFSIRQFSYLCFCGMIINRPELKSHIQMHNLSSCSENVVDPISLH E    NS
Sbjct:  145 AQGTSPVLTTSIATQTDNFVCNIISDDDHKSDSLVSPSRQICSSESDIRDSLALVPYRPNNVSQSDEFNSRKTRGNYQSSELSNDCMQHTDLIGGGSTDLNFQFKILNNKGYDMICASESCYIKLSNTVANNKSFINHYKKVHNMVFSIRQFSYLCFCGMIINRPELKSHIQMHNLSSCSENVVDPISLHKEFSSYNS 342

HSP 2 Score: 299.286 bits (765), Expect = 3.154e-88
Identity = 146/147 (99.32%), Postives = 147/147 (100.00%), Query Frame = 1 
Query:   31 MKVTDDVTQPEKSNLFNLDDARFNHLIERLGNSLTREFNNIAENLMKNIFASKDFYLILQNALQEFDSTLNNRLASRGFNASIAAGSDELSRSFSTNNNCYPSDSKAYELNPCDESALISRGLPKSNFSEHLNRNVLFYEQSSNAQG 471
            MKVTDDVTQPEKSN+FNLDDARFNHLIERLGNSLTREFNNIAENLMKNIFASKDFYLILQNALQEFDSTLNNRLASRGFNASIAAGSDELSRSFSTNNNCYPSDSKAYELNPCDESALISRGLPKSNFSEHLNRNVLFYEQSSNAQG
Sbjct:    1 MKVTDDVTQPEKSNVFNLDDARFNHLIERLGNSLTREFNNIAENLMKNIFASKDFYLILQNALQEFDSTLNNRLASRGFNASIAAGSDELSRSFSTNNNCYPSDSKAYELNPCDESALISRGLPKSNFSEHLNRNVLFYEQSSNAQG 147
[Close]
BLAST of SMED30031545 vs. Planmine SMEST
Match: SMESG000074865.1 (SMESG000074865.1)

HSP 1 Score: 300.827 bits (769), Expect = 9.348e-97
Identity = 146/147 (99.32%), Postives = 147/147 (100.00%), Query Frame = 1 
Query:   31 MKVTDDVTQPEKSNLFNLDDARFNHLIERLGNSLTREFNNIAENLMKNIFASKDFYLILQNALQEFDSTLNNRLASRGFNASIAAGSDELSRSFSTNNNCYPSDSKAYELNPCDESALISRGLPKSNFSEHLNRNVLFYEQSSNAQG 471
            MKVTDDVTQPEKSN+FNLDDARFNHLIERLGNSLTREFNNIAENLMKNIFASKDFYLILQNALQEFDSTLNNRLASRGFNASIAAGSDELSRSFSTNNNCYPSDSKAYELNPCDESALISRGLPKSNFSEHLNRNVLFYEQSSNAQG
Sbjct:    1 MKVTDDVTQPEKSNVFNLDDARFNHLIERLGNSLTREFNNIAENLMKNIFASKDFYLILQNALQEFDSTLNNRLASRGFNASIAAGSDELSRSFSTNNNCYPSDSKAYELNPCDESALISRGLPKSNFSEHLNRNVLFYEQSSNAQG 147

HSP 2 Score: 120.553 bits (301), Expect = 1.881e-40
Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = 1 
Query: 1090 STGTSPVLTTSIATQTDNFVCNIISDDDHKSDSLVSPSRQICSSESDIRDSLALVPYRP 1266
            + GTSPVLTTSIATQTDNFVCNIISDDDHKSDSLVSPSRQICSSESDIRDSLALVPYRP
Sbjct:  145 AQGTSPVLTTSIATQTDNFVCNIISDDDHKSDSLVSPSRQICSSESDIRDSLALVPYRP 203

HSP 3 Score: 65.855 bits (159), Expect = 1.881e-40
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 2 
Query: 1268 ITYHNLMNLIAEKLVVIISQANFLMTVCNILT 1363
            ITYHNLMNLIAEKLVVIISQANFLMTVCNILT
Sbjct:  204 ITYHNLMNLIAEKLVVIISQANFLMTVCNILT 235
[Close]
BLAST of SMED30031545 vs. Planmine SMEST
Match: SMESG000074876.1 (SMESG000074876.1)

HSP 1 Score: 199.134 bits (505), Expect = 8.757e-53
Identity = 130/183 (71.04%), Postives = 149/183 (81.42%), Query Frame = 1 
Query: 1813 MSSFFNIFPFECFDRWDYVFWPIHWNGNHWLLYISDNINKSSLLLDPLSHNLSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPLQNNSFDCGVFICQFALDYSVSTMPIIFRTPDVVYIRKTIFDTILFNINCNDDLNKDNKTNFVNKLYQRNKIPYFKMNIIKQKPLIHPLLIQ 2361
            MSSFFN FPFE FDRWDYVFWPIHWNGNHWLLYI+DNINKSSLLLDPL+H LSKEQLE Q+LLTNL+NKINNFIPNINND IVNNT NNHPLQNNS+DCGVFICQFA DY+ ST PI+F+ P+V  IR TI   I   +N  ++L  + K+    KLY+RN+   FK+ + K KPLIHPLL+Q
Sbjct:    1 MSSFFNTFPFEYFDRWDYVFWPIHWNGNHWLLYIADNINKSSLLLDPLTHCLSKEQLEFQSLLTNLVNKINNFIPNINNDNIVNNTNNNHPLQNNSYDCGVFICQFAFDYATSTTPIVFKIPEVYKIRNTISQIISTKLNNENELINEIKSGNRPKLYKRNRSSNFKIKVTKAKPLIHPLLVQ 183
The following BLAST results are available for this feature:
BLAST of SMED30031545 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031545 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031545 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031545 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031545 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031545 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031545 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031545 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031545 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031545 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031545 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031545 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031545 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031545 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000029191.10.000e+094.78SMESG000029191.1[more]
SMESG000029188.10.000e+064.18SMESG000029188.1[more]
SMESG000074843.14.961e-12596.46SMESG000074843.1[more]
SMESG000074865.19.348e-9799.32SMESG000074865.1[more]
SMESG000074876.18.757e-5371.04SMESG000074876.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30031545 ID=SMED30031545|Name=SMED30031545|organism=Schmidtea mediterranea sexual|type=transcript|length=2362bp
TGTTGAACATTGCTAAGAAGAAATTGCAACATGAAAGTAACTGATGACGT
CACGCAACCTGAGAAATCTAATCTCTTTAATTTGGATGATGCAAGATTTA
ATCATCTGATTGAAAGATTAGGTAATTCTCTAACACGTGAATTTAATAAT
ATTGCTGAGAATTTGATGAAAAACATTTTTGCAAGTAAGGATTTTTATTT
AATTTTGCAAAATGCTCTTCAGGAATTCGATTCTACTTTAAATAATCGAC
TTGCTTCTCGTGGATTTAATGCTTCAATTGCTGCTGGGTCTGATGAACTT
TCAAGATCATTTTCAACTAACAACAATTGCTATCCATCTGACAGTAAAGC
CTATGAATTGAACCCATGTGATGAAAGTGCTTTGATATCTCGTGGCTTAC
CTAAATCGAATTTTTCAGAACATTTAAATCGTAATGTTTTATTTTATGAA
CAATCTTCAAACGCTCAAGGTAATTGTCATGAAATTGTTAATTATACTTC
TTTAAATAATTCTAAATTGATTTCTTTTAAAAATGACTTTAATAATTTTA
AAATAATTAACAAAGAAAATTGTGATTTATTTAATGTAAATTTGTATACC
CGGGTTCGAATTTTGTCATTGAGTGAGCGCAGTGTTTTATGTGATAAGTT
TCCTTATATTTCTAATCTTTTGAAAGAAAGGGAATCATTTAAAAAGCTTA
AACTTGTTAAAGTTGCCCTATATAGAGATAAAATATCTATTACTAAAATT
TTAAACATCCAATATTTAGGAAGTTTATTTTATAGAAATGGTAATATTTG
TGCTTACCTAGTTCCTTCACCTGATCAGTTGAAAAATAGTTTGGATCAGA
GTGATTTGACCAAGATTAAGTCTAAATTAAATAATAATAGGTATAAGGTA
CTTGTAGACTTAGATGAAGATACTACTCCTGATATTAATAAAATTAAGCT
CTCTGTTAATAAACCCTCTAATGTATATAGAAAACACAAAAGAAAACGAG
CTCCGAAATTTCGTAAAAATGATAGTACACAAACATATTCACTTAAGAAA
GTAATTAAAGAAACCACTAGATGTTTAAAAAAATATATTTCAACAGGAAC
ATCTCCTGTCTTAACTACTTCAATTGCAACTCAGACCGATAATTTTGTTT
GTAATATTATTAGTGATGATGATCACAAATCTGATTCTTTAGTTTCGCCT
TCTCGTCAAATTTGTTCTTCGGAATCTGACATTAGAGATTCTCTAGCTCT
GGTTCCTTATCGTCCAAATAACGTATCACAATCTGATGAATTTAATAGCA
GAAAAACTCGTGGTAATTATCAGTCAAGCGAACTTTCTAATGACTGTATG
CAACATACTGACTTGATAGGAGGAGGTTCAACTGATCTGAATTTCCAATT
TAAAATTCTTAATAATAAAGGATATGACATGATTTGCGCTTCTGAAAGCT
GCTATATAAAATTAAGTAACACTGTGGCTAACAATAAATCATTTATCAAC
CATTATAAAAAAGTTCACAATATGGTATTTTCAATAAGACAATTTAGCTA
TCTCTGTTTTTGTGGAATGATTATTAATAGACCTGAGCTTAAATCTCATA
TTCAAATGCACAATTTAAGTAGCTGTTCTGAAAACGTTGTTGATCCAATC
TCGTTACATGTAGAAAATGAAGATTTAAATTCTGCTGCCCCTTCCCAATG
ACTGTCGGATAGCGCCATTGAAATTTTCTTTCGTTCTCAGATAATAGATC
GCAGTGATAAAATTATTAGGTACATTTCACCTCATTCTGCTATTGCTTTG
ATACACCATAATATGTCTTCATTTTTCAACATTTTCCCTTTTGAATGCTT
TGACAGATGGGATTACGTATTCTGGCCTATTCATTGGAACGGAAATCATT
GGCTGCTTTATATTTCTGATAACATTAATAAATCTTCCTTGTTACTTGAT
CCACTTAGTCATAACCTCTCTAAAGAACAGCTAGAACTACAGACGTTACT
TACTAATTTAATTAATAAAATAAATAACTTTATACCTAATATTAATAATG
ATATTATTGTGAATAATACATGTAATAATCACCCACTTCAAAATAACTCG
TTTGACTGCGGAGTTTTCATCTGTCAATTTGCTTTGGACTATTCAGTCTC
AACAATGCCTATAATATTTAGAACACCGGATGTTGTTTATATTAGAAAAA
CGATTTTTGATACTATATTATTTAATATTAATTGTAATGATGATTTAAAT
AAGGATAATAAAACAAATTTTGTGAATAAATTATACCAAAGAAATAAAAT
CCCTTATTTTAAAATGAATATAATTAAACAAAAACCTTTGATTCACCCGT
TATTAATTCAAC
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protein sequence of SMED30031545-orf-1

>SMED30031545-orf-1 ID=SMED30031545-orf-1|Name=SMED30031545-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=557bp
MKVTDDVTQPEKSNLFNLDDARFNHLIERLGNSLTREFNNIAENLMKNIF
ASKDFYLILQNALQEFDSTLNNRLASRGFNASIAAGSDELSRSFSTNNNC
YPSDSKAYELNPCDESALISRGLPKSNFSEHLNRNVLFYEQSSNAQGNCH
EIVNYTSLNNSKLISFKNDFNNFKIINKENCDLFNVNLYTRVRILSLSER
SVLCDKFPYISNLLKERESFKKLKLVKVALYRDKISITKILNIQYLGSLF
YRNGNICAYLVPSPDQLKNSLDQSDLTKIKSKLNNNRYKVLVDLDEDTTP
DINKIKLSVNKPSNVYRKHKRKRAPKFRKNDSTQTYSLKKVIKETTRCLK
KYISTGTSPVLTTSIATQTDNFVCNIISDDDHKSDSLVSPSRQICSSESD
IRDSLALVPYRPNNVSQSDEFNSRKTRGNYQSSELSNDCMQHTDLIGGGS
TDLNFQFKILNNKGYDMICASESCYIKLSNTVANNKSFINHYKKVHNMVF
SIRQFSYLCFCGMIINRPELKSHIQMHNLSSCSENVVDPISLHVENEDLN
SAAPSQ*
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protein sequence of SMED30031545-orf-2

>SMED30031545-orf-2 ID=SMED30031545-orf-2|Name=SMED30031545-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=183bp
MSSFFNIFPFECFDRWDYVFWPIHWNGNHWLLYISDNINKSSLLLDPLSH
NLSKEQLELQTLLTNLINKINNFIPNINNDIIVNNTCNNHPLQNNSFDCG
VFICQFALDYSVSTMPIIFRTPDVVYIRKTIFDTILFNINCNDDLNKDNK
TNFVNKLYQRNKIPYFKMNIIKQKPLIHPLLIQ
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000420parapharyngeal region
Vocabulary: INTERPRO
TermDefinition
IPR003653Peptidase_C48_C
Vocabulary: molecular function
TermDefinition
GO:0008234cysteine-type peptidase activity
Vocabulary: biological process
TermDefinition
GO:0006508proteolysis