40S ribosomal protein S21
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30031512 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 16
Homology
BLAST of 40S ribosomal protein S21 vs. Ensembl Human
Match: RPS21 (ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]) HSP 1 Score: 103.219 bits (256), Expect = 2.297e-29 Identity = 52/83 (62.65%), Postives = 61/83 (73.49%), Query Frame = 2 Query: 59 MINDLGVFVDSYIPRKCSASNRIIGAKDHASIRICLAETDPEKGTMTGNKVSYDISGNIRKMGESDDSINRLALKDKMLSENF 307 M ND G FVD Y+PRKCSASNRIIGAKDHASI++ +AE D G G +Y I G IR+MGESDDSI RLA D ++S+NF Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIRRMGESDDSILRLAKADGIVSKNF 83
BLAST of 40S ribosomal protein S21 vs. Ensembl Human
Match: RPS21 (ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]) HSP 1 Score: 98.5969 bits (244), Expect = 1.533e-27 Identity = 50/81 (61.73%), Postives = 59/81 (72.84%), Query Frame = 2 Query: 59 MINDLGVFVDSYIPRKCSASNRIIGAKDHASIRICLAETDPEKGTMTGNKVSYDISGNIRKMGESDDSINRLALKDKMLSE 301 M ND G FVD Y+PRKCSASNRIIGAKDHASI++ +AE D G G +Y I G IR+MGESDDSI RLA D ++S+ Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIRRMGESDDSILRLAKADGIVSK 81
BLAST of 40S ribosomal protein S21 vs. Ensembl Human
Match: RPS21 (ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]) HSP 1 Score: 77.7962 bits (190), Expect = 2.984e-19 Identity = 38/62 (61.29%), Postives = 44/62 (70.97%), Query Frame = 2 Query: 59 MINDLGVFVDSYIPRKCSASNRIIGAKDHASIRICLAETDPEKGTMTGNKVSYDISGNIRKM 244 M ND G FVD Y+PRKCSASNRIIGAKDHASI++ +AE D G G +Y I G IR+M Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIRRM 62
BLAST of 40S ribosomal protein S21 vs. Ensembl Human
Match: RPS21 (ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]) HSP 1 Score: 65.4698 bits (158), Expect = 9.683e-15 Identity = 32/48 (66.67%), Postives = 36/48 (75.00%), Query Frame = 2 Query: 59 MINDLGVFVDSYIPRKCSASNRIIGAKDHASIRICLAETDPEKGTMTG 202 M ND G FVD Y+PRKCSASNRIIGAKDHASI++ +AE E G G Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVSWEPGRREG 48
BLAST of 40S ribosomal protein S21 vs. Ensembl Celegans
Match: rps-21 (40S ribosomal protein S21 [Source:UniProtKB/Swiss-Prot;Acc:P49197]) HSP 1 Score: 91.6633 bits (226), Expect = 3.671e-25 Identity = 46/83 (55.42%), Postives = 57/83 (68.67%), Query Frame = 2 Query: 59 MINDLGVFVDSYIPRKCSASNRIIGAKDHASIRICLAETDPEKGTM-TGNKVSYDISGNIRKMGESDDSINRLALKDKMLSEN 304 M ND G V+ Y+PRKCS+SNRIIG KDHAS++I + DPE G M G Y I G IR+MGESDD+I RLA KD ++ + Sbjct: 1 MQNDAGQTVELYVPRKCSSSNRIIGPKDHASVQIDFVDVDPETGRMIPGKSTRYAICGAIRRMGESDDAILRLAQKDGLVPRD 83
BLAST of 40S ribosomal protein S21 vs. Ensembl Fly
Match: RpS21 (gene:FBgn0015521 transcript:FBtr0077621) HSP 1 Score: 99.3673 bits (246), Expect = 4.261e-28 Identity = 48/83 (57.83%), Postives = 60/83 (72.29%), Query Frame = 2 Query: 59 MINDLGVFVDSYIPRKCSASNRIIGAKDHASIRICLAETDPEKGTMTGNKVSYDISGNIRKMGESDDSINRLALKDKMLSENF 307 M ND G VD Y+PRKCSASNRII AKDHAS+++ + + DPE G T +Y I G IR+MGESDD I RLA KD ++++NF Sbjct: 1 MENDAGENVDLYVPRKCSASNRIIHAKDHASVQLSIVDVDPETGRQTDGSKTYAICGEIRRMGESDDCIVRLAKKDGIITKNF 83
BLAST of 40S ribosomal protein S21 vs. Ensembl Fly
Match: RpS21 (gene:FBgn0015521 transcript:FBtr0077623) HSP 1 Score: 99.3673 bits (246), Expect = 4.261e-28 Identity = 48/83 (57.83%), Postives = 60/83 (72.29%), Query Frame = 2 Query: 59 MINDLGVFVDSYIPRKCSASNRIIGAKDHASIRICLAETDPEKGTMTGNKVSYDISGNIRKMGESDDSINRLALKDKMLSENF 307 M ND G VD Y+PRKCSASNRII AKDHAS+++ + + DPE G T +Y I G IR+MGESDD I RLA KD ++++NF Sbjct: 1 MENDAGENVDLYVPRKCSASNRIIHAKDHASVQLSIVDVDPETGRQTDGSKTYAICGEIRRMGESDDCIVRLAKKDGIITKNF 83
BLAST of 40S ribosomal protein S21 vs. Ensembl Fly
Match: RpS21 (gene:FBgn0015521 transcript:FBtr0077622) HSP 1 Score: 99.3673 bits (246), Expect = 4.261e-28 Identity = 48/83 (57.83%), Postives = 60/83 (72.29%), Query Frame = 2 Query: 59 MINDLGVFVDSYIPRKCSASNRIIGAKDHASIRICLAETDPEKGTMTGNKVSYDISGNIRKMGESDDSINRLALKDKMLSENF 307 M ND G VD Y+PRKCSASNRII AKDHAS+++ + + DPE G T +Y I G IR+MGESDD I RLA KD ++++NF Sbjct: 1 MENDAGENVDLYVPRKCSASNRIIHAKDHASVQLSIVDVDPETGRQTDGSKTYAICGEIRRMGESDDCIVRLAKKDGIITKNF 83
BLAST of 40S ribosomal protein S21 vs. Ensembl Fly
Match: RpS21 (gene:FBgn0015521 transcript:FBtr0335131) HSP 1 Score: 99.3673 bits (246), Expect = 4.261e-28 Identity = 48/83 (57.83%), Postives = 60/83 (72.29%), Query Frame = 2 Query: 59 MINDLGVFVDSYIPRKCSASNRIIGAKDHASIRICLAETDPEKGTMTGNKVSYDISGNIRKMGESDDSINRLALKDKMLSENF 307 M ND G VD Y+PRKCSASNRII AKDHAS+++ + + DPE G T +Y I G IR+MGESDD I RLA KD ++++NF Sbjct: 1 MENDAGENVDLYVPRKCSASNRIIHAKDHASVQLSIVDVDPETGRQTDGSKTYAICGEIRRMGESDDCIVRLAKKDGIITKNF 83
BLAST of 40S ribosomal protein S21 vs. Ensembl Fly
Match: RpS21 (gene:FBgn0015521 transcript:FBtr0273293) HSP 1 Score: 93.9745 bits (232), Expect = 4.635e-26 Identity = 46/81 (56.79%), Postives = 58/81 (71.60%), Query Frame = 2 Query: 59 MINDLGVFVDSYIPRKCSASNRIIGAKDHASIRICLAETDPEKGTMTGNKVSYDISGNIRKMGESDDSINRLALKDKMLSE 301 M ND G VD Y+PRKCSASNRII AKDHAS+++ + + DPE G T +Y I G IR+MGESDD I RLA KD ++++ Sbjct: 1 MENDAGENVDLYVPRKCSASNRIIHAKDHASVQLSIVDVDPETGRQTDGSKTYAICGEIRRMGESDDCIVRLAKKDGIITK 81
BLAST of 40S ribosomal protein S21 vs. Ensembl Zebrafish
Match: rps21 (ribosomal protein S21 [Source:NCBI gene;Acc:394166]) HSP 1 Score: 97.4413 bits (241), Expect = 3.383e-27 Identity = 48/81 (59.26%), Postives = 59/81 (72.84%), Query Frame = 2 Query: 59 MINDLGVFVDSYIPRKCSASNRIIGAKDHASIRICLAETDPEKGTMTGNKVSYDISGNIRKMGESDDSINRLALKDKMLSE 301 M ND G FVD Y+PRKCSASNRIIGAKDHASI+I +AE D G G +Y I G IR+MGE+DDS+ RLA D ++++ Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQINIAEVDRVTGRFNGQFKTYAICGAIRRMGEADDSLLRLAKTDSIVAK 81
BLAST of 40S ribosomal protein S21 vs. Ensembl Zebrafish
Match: rps21 (ribosomal protein S21 [Source:NCBI gene;Acc:394166]) HSP 1 Score: 97.4413 bits (241), Expect = 3.383e-27 Identity = 48/81 (59.26%), Postives = 59/81 (72.84%), Query Frame = 2 Query: 59 MINDLGVFVDSYIPRKCSASNRIIGAKDHASIRICLAETDPEKGTMTGNKVSYDISGNIRKMGESDDSINRLALKDKMLSE 301 M ND G FVD Y+PRKCSASNRIIGAKDHASI+I +AE D G G +Y I G IR+MGE+DDS+ RLA D ++++ Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQINIAEVDRVTGRFNGQFKTYAICGAIRRMGEADDSLLRLAKTDSIVAK 81
BLAST of 40S ribosomal protein S21 vs. Ensembl Xenopus
Match: rps21 (ribosomal protein S21 [Source:NCBI gene;Acc:448708]) HSP 1 Score: 102.064 bits (253), Expect = 6.844e-29 Identity = 52/83 (62.65%), Postives = 60/83 (72.29%), Query Frame = 2 Query: 59 MINDLGVFVDSYIPRKCSASNRIIGAKDHASIRICLAETDPEKGTMTGNKVSYDISGNIRKMGESDDSINRLALKDKMLSENF 307 M ND G FVD Y+PRKCSASNRIIGAKDHASI+I +AE D G +Y I G IR+MGESDDSI RLA D ++S+NF Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQINIAEVDKVTGRFNSQYKTYAICGAIRRMGESDDSILRLAKNDCIVSKNF 83
BLAST of 40S ribosomal protein S21 vs. Ensembl Xenopus
Match: rps21 (ribosomal protein S21 [Source:NCBI gene;Acc:448708]) HSP 1 Score: 97.4413 bits (241), Expect = 5.091e-27 Identity = 50/81 (61.73%), Postives = 58/81 (71.60%), Query Frame = 2 Query: 59 MINDLGVFVDSYIPRKCSASNRIIGAKDHASIRICLAETDPEKGTMTGNKVSYDISGNIRKMGESDDSINRLALKDKMLSE 301 M ND G FVD Y+PRKCSASNRIIGAKDHASI+I +AE D G +Y I G IR+MGESDDSI RLA D ++S+ Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQINIAEVDKVTGRFNSQYKTYAICGAIRRMGESDDSILRLAKNDCIVSK 81
BLAST of 40S ribosomal protein S21 vs. Ensembl Mouse
Match: Rps21 (ribosomal protein S21 [Source:MGI Symbol;Acc:MGI:1913731]) HSP 1 Score: 101.679 bits (252), Expect = 8.021e-29 Identity = 51/83 (61.45%), Postives = 60/83 (72.29%), Query Frame = 2 Query: 59 MINDLGVFVDSYIPRKCSASNRIIGAKDHASIRICLAETDPEKGTMTGNKVSYDISGNIRKMGESDDSINRLALKDKMLSENF 307 M ND G FVD Y+PRKCSASNRII AKDHASI++ +AE D G G +Y I G IR+MGESDDSI RLA D ++S+NF Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIAAKDHASIQMNVAEVDRTTGRFNGQFKTYGICGAIRRMGESDDSILRLAKADGIVSKNF 83
BLAST of 40S ribosomal protein S21 vs. UniProt/SwissProt
Match: sp|Q6RF66|RS21_PECGU (40S ribosomal protein S21 OS=Pectinaria gouldii OX=260746 GN=rps-21 PE=3 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 3.755e-35 Identity = 53/85 (62.35%), Postives = 68/85 (80.00%), Query Frame = 2 Query: 59 MINDLGVFVDSYIPRKCSASNRIIGAKDHASIRICLAETDPEKGTMTGNKVSYDISGNIRKMGESDDSINRLALKDKMLSENFGR 313 M ND G VD YIPRKCSA+N I+ AKDHAS++I +AE DP+ G MTG +++Y + G +R+MGE+DDS+NRLA+KDKMLSE FG Sbjct: 1 MQNDQGEIVDVYIPRKCSATNNILAAKDHASVQINMAEIDPQTGRMTGKQITYALCGELRRMGEADDSVNRLAMKDKMLSEVFGH 85
BLAST of 40S ribosomal protein S21 vs. UniProt/SwissProt
Match: sp|Q4GXP2|RS21_BIPLU (40S ribosomal protein S21 OS=Biphyllus lunatus OX=197003 GN=RpS21 PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.977e-31 Identity = 53/83 (63.86%), Postives = 63/83 (75.90%), Query Frame = 2 Query: 59 MINDLGVFVDSYIPRKCSASNRIIGAKDHASIRICLAETDPEKGTMTGNKVSYDISGNIRKMGESDDSINRLALKDKMLSENF 307 M ND G FVD Y PRKCSASNRII AKDHASI++C+AE DP+ G MT + SY + G IR+MGESDD I RL KD +L++NF Sbjct: 1 MENDAGEFVDLYCPRKCSASNRIIHAKDHASIQLCVAEVDPQTGRMTDSTKSYALCGAIRRMGESDDCIVRLTKKDGILAKNF 83
BLAST of 40S ribosomal protein S21 vs. UniProt/SwissProt
Match: sp|Q86CT3|RS21_BRABE (40S ribosomal protein S21 OS=Branchiostoma belcheri OX=7741 GN=RPS21 PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.191e-29 Identity = 51/79 (64.56%), Postives = 60/79 (75.95%), Query Frame = 2 Query: 59 MINDLGVFVDSYIPRKCSASNRIIGAKDHASIRICLAETDPEKGTMTGNKVSYDISGNIRKMGESDDSINRLALKDKML 295 M ND G VD YIPRKCS++NRIIGAKDHASI+I AE DP G MTG +Y I G IR+MGESDD + RLA+KDK++ Sbjct: 1 MQNDAGEVVDLYIPRKCSSTNRIIGAKDHASIQINFAEVDPTTGRMTGQYKTYAICGYIRQMGESDDCLKRLAIKDKII 79
BLAST of 40S ribosomal protein S21 vs. UniProt/SwissProt
Match: sp|Q4GXP3|RS21_AGRLI (40S ribosomal protein S21 OS=Agriotes lineatus OX=292458 GN=RpS21 PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 9.570e-29 Identity = 52/83 (62.65%), Postives = 60/83 (72.29%), Query Frame = 2 Query: 59 MINDLGVFVDSYIPRKCSASNRIIGAKDHASIRICLAETDPEKGTMTGNKVSYDISGNIRKMGESDDSINRLALKDKMLSENF 307 M ND G FVD Y PRKCSASNRII AKDHASI++ +AE P G MT N SY + G IR+MGESDD I RL KD +L++NF Sbjct: 1 MENDAGEFVDLYCPRKCSASNRIIHAKDHASIQLSIAEVVPATGRMTENTKSYALCGAIRRMGESDDCIVRLTKKDGILTKNF 83
BLAST of 40S ribosomal protein S21 vs. UniProt/SwissProt
Match: sp|P63221|RS21_PIG (40S ribosomal protein S21 OS=Sus scrofa OX=9823 GN=RPS21 PE=1 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.103e-28 Identity = 52/83 (62.65%), Postives = 61/83 (73.49%), Query Frame = 2 Query: 59 MINDLGVFVDSYIPRKCSASNRIIGAKDHASIRICLAETDPEKGTMTGNKVSYDISGNIRKMGESDDSINRLALKDKMLSENF 307 M ND G FVD Y+PRKCSASNRIIGAKDHASI++ +AE D G G +Y I G IR+MGESDDSI RLA D ++S+NF Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIRRMGESDDSILRLAKADGIVSKNF 83
BLAST of 40S ribosomal protein S21 vs. TrEMBL
Match: A0A0U2KE49 (40S ribosomal protein S21 OS=Centropages tenuiremis OX=544689 PE=2 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 3.982e-30 Identity = 55/83 (66.27%), Postives = 65/83 (78.31%), Query Frame = 2 Query: 59 MINDLGVFVDSYIPRKCSASNRIIGAKDHASIRICLAETDPEKGTMTGNKVSYDISGNIRKMGESDDSINRLALKDKMLSENF 307 M N+ G +VD YIPRKCSASNRI+ AKDHASI+I LAE DPE G MTG+ +Y I G IR+MGESDD INRLA KD ++ +NF Sbjct: 1 MQNEAGEYVDLYIPRKCSASNRILAAKDHASIQINLAEVDPETGRMTGSNKTYAICGAIRRMGESDDCINRLAKKDGLVIKNF 83
BLAST of 40S ribosomal protein S21 vs. TrEMBL
Match: A0A210Q7S7 (40S ribosomal protein S21 OS=Mizuhopecten yessoensis OX=6573 GN=KP79_PYT08893 PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 1.649e-29 Identity = 54/83 (65.06%), Postives = 64/83 (77.11%), Query Frame = 2 Query: 59 MINDLGVFVDSYIPRKCSASNRIIGAKDHASIRICLAETDPEKGTMTGNKVSYDISGNIRKMGESDDSINRLALKDKMLSENF 307 M N+ G FVD YIPRKCSASNRII AKDHASI++ +A+ D G MTG +Y I G IR+MGESDDSINRLA KD +L++NF Sbjct: 1 MQNEGGEFVDMYIPRKCSASNRIIAAKDHASIQLNIADVDETTGRMTGTNTTYAICGTIRRMGESDDSINRLAKKDSILTKNF 83
BLAST of 40S ribosomal protein S21 vs. TrEMBL
Match: A0A0U2V3E4 (40S ribosomal protein S21 OS=Labidocera rotunda OX=207950 PE=2 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 2.097e-29 Identity = 54/83 (65.06%), Postives = 64/83 (77.11%), Query Frame = 2 Query: 59 MINDLGVFVDSYIPRKCSASNRIIGAKDHASIRICLAETDPEKGTMTGNKVSYDISGNIRKMGESDDSINRLALKDKMLSENF 307 M N+ G +VD YIP KCSASNRI+ AKDHASI+I LAE DPE G MTG +Y I G IR+MGESDD INRLA KD ++++NF Sbjct: 1 MQNEAGEYVDLYIPMKCSASNRILAAKDHASIQINLAEVDPETGRMTGGYKTYAICGAIRRMGESDDCINRLAKKDGLVAKNF 83
BLAST of 40S ribosomal protein S21 vs. TrEMBL
Match: A0A4D5R977 (40S ribosomal protein S21 OS=Scolopendra viridis OX=118503 PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 2.391e-29 Identity = 53/83 (63.86%), Postives = 66/83 (79.52%), Query Frame = 2 Query: 59 MINDLGVFVDSYIPRKCSASNRIIGAKDHASIRICLAETDPEKGTMTGNKVSYDISGNIRKMGESDDSINRLALKDKMLSENF 307 M N++G +VD YIPRKCSASNRII AKDHASI+I + E D + G MTGN +Y I G+IR+MGESDD INRLA KD ++++NF Sbjct: 1 MQNEVGEYVDLYIPRKCSASNRIIQAKDHASIQINITEVDEQTGRMTGNNKTYAICGSIRRMGESDDCINRLAKKDGIIAKNF 83
BLAST of 40S ribosomal protein S21 vs. TrEMBL
Match: Q4GXP0 (40S ribosomal protein S21 OS=Sphaerius sp. APV-2005 OX=292460 GN=rpS21e PE=2 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 3.544e-29 Identity = 55/83 (66.27%), Postives = 62/83 (74.70%), Query Frame = 2 Query: 59 MINDLGVFVDSYIPRKCSASNRIIGAKDHASIRICLAETDPEKGTMTGNKVSYDISGNIRKMGESDDSINRLALKDKMLSENF 307 M ND G FVD Y PRKCSASNRII AKDHASI+I +AE DP G MT N SY + G IR+MGESDD INRL KD +L++NF Sbjct: 1 MENDAGEFVDLYCPRKCSASNRIIHAKDHASIQISIAEVDPSTGRMTENSKSYALCGAIRRMGESDDCINRLVKKDGILAKNF 83
BLAST of 40S ribosomal protein S21 vs. Ensembl Cavefish
Match: rps21 (ribosomal protein S21 [Source:NCBI gene;Acc:103039508]) HSP 1 Score: 96.2857 bits (238), Expect = 6.568e-27 Identity = 48/81 (59.26%), Postives = 58/81 (71.60%), Query Frame = 2 Query: 59 MINDLGVFVDSYIPRKCSASNRIIGAKDHASIRICLAETDPEKGTMTGNKVSYDISGNIRKMGESDDSINRLALKDKMLSE 301 M ND G FVD Y+PRKCSASNRII AKDHASI+I +AE D G G +Y I G IR+MGE+DDS+ RLA D ++S+ Sbjct: 1 MQNDAGEFVDMYVPRKCSASNRIIAAKDHASIQINIAEVDKVTGRFNGQFKTYAICGAIRRMGEADDSLLRLAKTDGIVSK 81
BLAST of 40S ribosomal protein S21 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000007607.1 (pep scaffold:Pmarinus_7.0:GL481617:4097:7733:1 gene:ENSPMAG00000006866.1 transcript:ENSPMAT00000007607.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 101.679 bits (252), Expect = 1.197e-29 Identity = 49/83 (59.04%), Postives = 59/83 (71.08%), Query Frame = 2 Query: 59 MINDLGVFVDSYIPRKCSASNRIIGAKDHASIRICLAETDPEKGTMTGNKVSYDISGNIRKMGESDDSINRLALKDKMLSENF 307 M ND G FVD Y+PRKCSASNRII AKDHAS+++ +AE DP G G +Y I G IR+MGESDD I RLA D ++S+ F Sbjct: 1 MQNDTGEFVDLYVPRKCSASNRIIAAKDHASVQMNIAEVDPSTGRFNGQYKTYAICGPIRRMGESDDCILRLAKDDSIVSKTF 83
BLAST of 40S ribosomal protein S21 vs. Ensembl Yeast
Match: RPS21A (Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S21, no bacterial homolog; RPS21A has a paralog, RPS21B, that arose from the whole genome duplication [Source:SGD;Acc:S000001765]) HSP 1 Score: 89.7373 bits (221), Expect = 4.853e-25 Identity = 43/79 (54.43%), Postives = 56/79 (70.89%), Query Frame = 2 Query: 59 MINDLGVFVDSYIPRKCSASNRIIGAKDHASIRICLAETDPEKGTMTGNKVSYDISGNIRKMGESDDSINRLALKDKML 295 M ND G V+ Y+PRKCSA+NRII A DHAS++I +A+ D E + G V+Y +SG +R GESDDS+NRLA D +L Sbjct: 1 MENDKGQLVELYVPRKCSATNRIIKADDHASVQINVAKVDEEGRAIPGEYVTYALSGYVRSRGESDDSLNRLAQNDGLL 79
BLAST of 40S ribosomal protein S21 vs. Ensembl Yeast
Match: RPS21B (Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S21, no bacterial homolog; RPS21B has a paralog, RPS21A, that arose from the whole genome duplication [Source:SGD;Acc:S000003672]) HSP 1 Score: 88.9669 bits (219), Expect = 8.548e-25 Identity = 42/79 (53.16%), Postives = 56/79 (70.89%), Query Frame = 2 Query: 59 MINDLGVFVDSYIPRKCSASNRIIGAKDHASIRICLAETDPEKGTMTGNKVSYDISGNIRKMGESDDSINRLALKDKML 295 M ND G V+ Y+PRKCSA+NRII A DHAS++I +A+ D E + G ++Y +SG +R GESDDS+NRLA D +L Sbjct: 1 MENDKGQLVELYVPRKCSATNRIIKADDHASVQINVAKVDEEGRAIPGEYITYALSGYVRSRGESDDSLNRLAQNDGLL 79
BLAST of 40S ribosomal protein S21 vs. Ensembl Nematostella
Match: EDO39912 (40S ribosomal protein S21 [Source:UniProtKB/TrEMBL;Acc:A7S8Q0]) HSP 1 Score: 83.1889 bits (204), Expect = 4.116e-22 Identity = 40/81 (49.38%), Postives = 57/81 (70.37%), Query Frame = 2 Query: 59 MINDLGVFVDSYIPRKCSASNRIIGAKDHASIRICLAETDPEKGTMTGNKVSYDISGNIRKMGESDDSINRLALKDKMLSE 301 M N+ G VD YIPRKCS +N II AKDHAS+++ + E D E G TGN +Y + G +RK GE+DDS+ ++A +D ++S+ Sbjct: 1 MQNEAGENVDMYIPRKCSVTNSIISAKDHASVQLNVGEID-ETGRFTGNSTTYALCGFLRKQGEADDSLTQIARRDGIISK 80
BLAST of 40S ribosomal protein S21 vs. Ensembl Medaka
Match: rps21 (ribosomal protein S21 [Source:NCBI gene;Acc:101164286]) HSP 1 Score: 101.293 bits (251), Expect = 6.981e-29 Identity = 51/82 (62.20%), Postives = 60/82 (73.17%), Query Frame = 2 Query: 59 MINDLGVFVDSYIPRKCSASNRIIGAKDHASIRICLAETDPEKGTMTGNKVSYDISGNIRKMGESDDSINRLALKDKMLSEN 304 M ND G FVD Y+PRKCSASNRIIGAKDHASI+I +AE D G G +Y I G IR+MGESDDSI RLA D ++++N Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQINIAEVDKVTGRFNGQFKTYAICGAIRRMGESDDSILRLAKNDTIVAKN 82
BLAST of 40S ribosomal protein S21 vs. Planmine SMEST
Match: SMESG000004954.1 (SMESG000004954.1) HSP 1 Score: 182.185 bits (461), Expect = 8.980e-61 Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 2 Query: 59 MINDLGVFVDSYIPRKCSASNRIIGAKDHASIRICLAETDPEKGTMTGNKVSYDISGNIRKMGESDDSINRLALKDKMLSENFGRKQQ 322 MINDLGVFVDSYIPRKCSASNRIIGAKDHASIRICLAETDPEKGTMTGNKVSYDISGNIRKMGESDDSINRLALKDKMLSENFGRKQQ Sbjct: 1 MINDLGVFVDSYIPRKCSASNRIIGAKDHASIRICLAETDPEKGTMTGNKVSYDISGNIRKMGESDDSINRLALKDKMLSENFGRKQQ 88 The following BLAST results are available for this feature:
BLAST of 40S ribosomal protein S21 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 4
BLAST of 40S ribosomal protein S21 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 1
BLAST of 40S ribosomal protein S21 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 5
BLAST of 40S ribosomal protein S21 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 2
BLAST of 40S ribosomal protein S21 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 2
BLAST of 40S ribosomal protein S21 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 1
BLAST of 40S ribosomal protein S21 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of 40S ribosomal protein S21 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of 40S ribosomal protein S21 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 1
BLAST of 40S ribosomal protein S21 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 1
BLAST of 40S ribosomal protein S21 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 2
BLAST of 40S ribosomal protein S21 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of 40S ribosomal protein S21 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 1
BLAST of 40S ribosomal protein S21 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 1
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30031512 ID=SMED30031512|Name=40S ribosomal protein S21|organism=Schmidtea mediterranea sexual|type=transcript|length=412bpback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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