RNA binding motif single stranded interacting

Overview


Name	RNA binding motif single stranded interacting
Smed ID	SMED30031493
Length (bp)	1508

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of RNA binding motif single stranded interacting (SMED30031493) t-SNE clustered cells

Violin plots show distribution of expression levels for RNA binding motif single stranded interacting (SMED30031493) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of RNA binding motif single stranded interacting (SMED30031493) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30031493

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 7

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
parapharyngeal region	SMED30031493	h1SMcG0014304	SmedASXL_012237	SmedAsxl_ww_GCZZ01	PMID:27034770 Currie et al., 2016
pharynx	SMED30031493	h1SMcG0014304	dd_Smed_v4_3832_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
nervous system	SMED30031493	h1SMcG0014304	dd_Smed_v4_3832_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
epidermis	SMED30031493	h1SMcG0014304	dd_Smed_v4_3832_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cephalic ganglia	SMED30031493	h1SMcG0014304	dd_Smed_v4_3832_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
muscle cell	SMED30031493	h1SMcG0014304	dd_Smed_v4_3832_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
non-ciliated neuron	SMED30031493	h1SMcG0014304	dd_Smed_v4_3832_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018

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Homology

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BLAST of RNA binding motif single stranded interacting vs. Ensembl Human
Match: RBMS1 (RNA binding motif single stranded interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:9907])

HSP 1 Score: 95.5153 bits (236), Expect = 9.808e-21
Identity = 66/225 (29.33%), Postives = 109/225 (48.44%), Query Frame = 1

Query:  316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSED-----STGPLEAKYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLTSPNGTQMLTAIVDNGYFKGP 972
            S+TNLYI+GL  + TD+D+++L      + S KA ++    KCKGYGF+DF +P  A   +  ++        + AK+ E+D TNLYI+NLP    S D ++L+++ + +G++ S  I+ +       GVGF R    E  +  I     N + +         T PL  K+AD      +  +  + +G     +    + L   P      TA + NG++  P
Sbjct:   27 SKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKAS--GVQAQMAKQQEQDPTNLYISNLP---LSMDEQELENMLKPFGQVISTRILRDSSGTS-RGVGFARMESTEKCEAVIGHF--NGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWHREGEAGMTLTYDPT-----TAAIQNGFYPSP 238

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Query:  316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSED-----STGPLEAKYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLTSPNGTQMLTAIVDNGYFKGP 972
            S+TNLYI+GL  + TD+D+++L      + S KA ++    KCKGYGF+DF +P  A   +  ++        + AK+ E+D TNLYI+NLP    S D ++L+++ + +G++ S  I+ +       GVGF R    E  +  I     N + +         T PL  K+AD      +  +  + +G     +    + L   P      TA + NG++  P
Sbjct:   27 SKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKAS--GVQAQMAKQQEQDPTNLYISNLP---LSMDEQELENMLKPFGQVISTRILRDSSGTS-RGVGFARMESTEKCEAVIGHF--NGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWHREGEAGMTLTYDPT-----TAAIQNGFYPSP 238

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Query:  316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSED-----STGPLEAKYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLTSPNGTQMLTAIVDNGYFKGP 972
            S+TNLYI+GL  + TD+D+++L      + S KA ++    KCKGYGF+DF +P  A   +  ++        + AK+ E+D TNLYI+NLP    S D ++L+++ + +G++ S  I+ +       GVGF R    E  +  I     N + +         T PL  K+AD      +  +  + +G     +    + L   P      TA + NG++  P
Sbjct:   27 SKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKAS--GVQAQMAKQQEQDPTNLYISNLP---LSMDEQELENMLKPFGQVISTRILRDSSGTS-RGVGFARMESTEKCEAVIGHF--NGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWHREGEAGMTLTYDPT-----TAAIQNGFYPSP 238

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BLAST of RNA binding motif single stranded interacting vs. Ensembl Human
Match: RBMS1 (RNA binding motif single stranded interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:9907])

HSP 1 Score: 92.8189 bits (229), Expect = 9.182e-20
Identity = 67/228 (29.39%), Postives = 111/228 (48.68%), Query Frame = 1

Query:  316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILS-----EDSTGPLEAKYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLT---SPNGTQMLTAIVDNGYFKGP 972
            S+TNLYI+GL  + TD+D+++L      + S KA ++    KCKGYGF+DF +P  A   +  ++        + AK+ E+D TNLYI+NLP    S D ++L+++ + +G++ S  I+ +       GVGF R    E  +  I     N + +         T PL  K+AD      +  +  + +G     +   +L  +T    P      TA + NG++  P
Sbjct:   40 SKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKAS--GVQAQMAKQQEQDPTNLYISNLP---LSMDEQELENMLKPFGQVISTRILRDSSGTS-RGVGFARMESTEKCEAVIGHF--NGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWHREGEVRLAGMTLTYDPT-----TAAIQNGFYPSP 254

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BLAST of RNA binding motif single stranded interacting vs. Ensembl Human
Match: RBMS1 (RNA binding motif single stranded interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:9907])

HSP 1 Score: 92.8189 bits (229), Expect = 1.092e-19
Identity = 67/228 (29.39%), Postives = 111/228 (48.68%), Query Frame = 1

Query:  316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSED-----STGPLEAKYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLT---SPNGTQMLTAIVDNGYFKGP 972
            S+TNLYI+GL  + TD+D+++L      + S KA ++    KCKGYGF+DF +P  A   +  ++        + AK+ E+D TNLYI+NLP    S D ++L+++ + +G++ S  I+ +       GVGF R    E  +  I     N + +         T PL  K+AD      +  +  + +G     +   +L  +T    P      TA + NG++  P
Sbjct:   60 SKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKAS--GVQAQMAKQQEQDPTNLYISNLP---LSMDEQELENMLKPFGQVISTRILRDSSGTS-RGVGFARMESTEKCEAVIGHF--NGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWHREGEVRLAGMTLTYDPT-----TAAIQNGFYPSP 274

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BLAST of RNA binding motif single stranded interacting vs. Ensembl Celegans
Match: sup-26 (SUPpressor [Source:UniProtKB/TrEMBL;Acc:D5MCQ8])

HSP 1 Score: 86.6557 bits (213), Expect = 3.377e-18
Identity = 64/194 (32.99%), Postives = 100/194 (51.55%), Query Frame = 1

Query:  283 KEISNFNQIKTSRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIED-DKKCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNH-QILSEDSTGP-LEAKYADKHNTDSRRKHSI 855
            +  SNFN   +S TNLYI+GL  N  D+ + ++      + S KA ++     CKGYGF+DF +P+ A   ++ +        +   ++ E+D TNLYI NLP  +T    + L++   K+G + S  I L    N+  GVGF R   +E  ++ I+ L       +S++  GP L  K AD   T  + KHS+
Sbjct:   95 RASSNFNTTPSS-TNLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDGLNTEGVQAQMAKLQQQEQDPTNLYIANLPLDFT---EQMLETELNKFGMVISTRI-LRTPDNQSRGVGFARMDSKEKCEVIISALNGGRFDTMSKE--GPALLIKQAD---TGRKSKHSM 278

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Query:  283 KEISNFNQIKTSRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIED-DKKCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNH-QILSEDSTGP-LEAKYADKHNTDSRRKHSI 855
            +  SNFN   +S TNLYI+GL  N  D+ + ++      + S KA ++     CKGYGF+DF +P+ A   ++ +        +   ++ E+D TNLYI NLP  +T    + L++   K+G + S  I L    N+  GVGF R   +E  ++ I+ L       +S++  GP L  K AD   T  + KHS+
Sbjct:   95 RASSNFNTTPSS-TNLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDGLNTEGVQAQMAKLQQQEQDPTNLYIANLPLDFT---EQMLETELNKFGMVISTRI-LRTPDNQSRGVGFARMDSKEKCEVIISALNGGRFDTMSKE--GPALLIKQAD---TGRKSKHSM 278

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BLAST of RNA binding motif single stranded interacting vs. Ensembl Celegans
Match: sup-26 (SUPpressor [Source:UniProtKB/TrEMBL;Acc:D5MCQ8])

HSP 1 Score: 84.7297 bits (208), Expect = 5.062e-18
Identity = 53/156 (33.97%), Postives = 83/156 (53.21%), Query Frame = 1

Query:  292 SNFNQIKTSRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIED-DKKCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDL 756
            SNFN   +S TNLYI+GL  N  D+ + ++      + S KA ++     CKGYGF+DF +P+ A   ++ +        +   ++ E+D TNLYI NLP  +T    + L++   K+G + S  I L    N+  GVGF R   +E  ++ I+ L
Sbjct:   98 SNFNTTPSS-TNLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDGLNTEGVQAQMAKLQQQEQDPTNLYIANLPLDFT---EQMLETELNKFGMVISTRI-LRTPDNQSRGVGFARMDSKEKCEVIISAL 248

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Query:  292 SNFNQIKTSRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIED-DKKCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDL 756
            SNFN   +S TNLYI+GL  N  D+ + ++      + S KA ++     CKGYGF+DF +P+ A   ++ +        +   ++ E+D TNLYI NLP  +T    + L++   K+G + S  I L    N+  GVGF R   +E  ++ I+ L
Sbjct:   98 SNFNTTPSS-TNLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDGLNTEGVQAQMAKLQQQEQDPTNLYIANLPLDFT---EQMLETELNKFGMVISTRI-LRTPDNQSRGVGFARMDSKEKCEVIISAL 248

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Celegans
Match: sup-26 (SUPpressor [Source:UniProtKB/TrEMBL;Acc:D5MCQ8])

HSP 1 Score: 86.6557 bits (213), Expect = 5.522e-18
Identity = 64/194 (32.99%), Postives = 100/194 (51.55%), Query Frame = 1

Query:  283 KEISNFNQIKTSRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIED-DKKCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNH-QILSEDSTGP-LEAKYADKHNTDSRRKHSI 855
            +  SNFN   +S TNLYI+GL  N  D+ + ++      + S KA ++     CKGYGF+DF +P+ A   ++ +        +   ++ E+D TNLYI NLP  +T    + L++   K+G + S  I L    N+  GVGF R   +E  ++ I+ L       +S++  GP L  K AD   T  + KHS+
Sbjct:   95 RASSNFNTTPSS-TNLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDGLNTEGVQAQMAKLQQQEQDPTNLYIANLPLDFT---EQMLETELNKFGMVISTRI-LRTPDNQSRGVGFARMDSKEKCEVIISALNGGRFDTMSKE--GPALLIKQAD---TGRKSKHSM 278

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BLAST of RNA binding motif single stranded interacting vs. Ensembl Fly
Match: shep (gene:FBgn0052423 transcript:FBtr0077172)

HSP 1 Score: 99.7525 bits (247), Expect = 5.426e-22
Identity = 60/169 (35.50%), Postives = 90/169 (53.25%), Query Frame = 1

Query:  316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYAD 819
            S+TNLYI+GL    TD+D++ +      + S KA ++    KCKGYGF+DF  P  A   ++ +Q +      + AK+ E+D TNLYI NLP  +   D   L+++  KYG++ S  I+ ++  N   GVGF R    E  +  I     N    ++D   PL  K+AD
Sbjct:  229 SKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVKGLQGK--GVQAQMAKQQEQDPTNLYIANLPPHFKETD---LEAMLSKYGQVVSTRILRDQQMNS-KGVGFARMESREKCEQIIQMFNGNTIPGAKD---PLLVKFAD 388

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BLAST of RNA binding motif single stranded interacting vs. Ensembl Fly
Match: shep (gene:FBgn0052423 transcript:FBtr0308859)

HSP 1 Score: 99.7525 bits (247), Expect = 6.847e-22
Identity = 60/169 (35.50%), Postives = 90/169 (53.25%), Query Frame = 1

Query:  316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYAD 819
            S+TNLYI+GL    TD+D++ +      + S KA ++    KCKGYGF+DF  P  A   ++ +Q +      + AK+ E+D TNLYI NLP  +   D   L+++  KYG++ S  I+ ++  N   GVGF R    E  +  I     N    ++D   PL  K+AD
Sbjct:  241 SKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVKGLQGK--GVQAQMAKQQEQDPTNLYIANLPPHFKETD---LEAMLSKYGQVVSTRILRDQQMNS-KGVGFARMESREKCEQIIQMFNGNTIPGAKD---PLLVKFAD 400

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BLAST of RNA binding motif single stranded interacting vs. Ensembl Fly
Match: shep (gene:FBgn0052423 transcript:FBtr0301599)

HSP 1 Score: 93.9745 bits (232), Expect = 1.589e-20
Identity = 63/178 (35.39%), Postives = 93/178 (52.25%), Query Frame = 1

Query:  316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTP---EDAIIGLE--YIQERHPNFTI----KFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYAD 819
            S+TNLYI+GL    TD+D++ +      + S KA ++    KCKGYGF+DF  P   E A+ GL+   +Q +     I    + A + E+D TNLYI NLP  +   D   L+++  KYG++ S  I+ ++  N   GVGF R    E  +  I     N    ++D   PL  K+AD
Sbjct:   19 SKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVKGLQGKGVQAQMAKVGIWVLHRPAIQQEQDPTNLYIANLPPHFKETD---LEAMLSKYGQVVSTRILRDQQMNS-KGVGFARMESREKCEQIIQMFNGNTIPGAKD---PLLVKFAD 189

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BLAST of RNA binding motif single stranded interacting vs. Ensembl Fly
Match: shep (gene:FBgn0052423 transcript:FBtr0333287)

HSP 1 Score: 93.9745 bits (232), Expect = 1.589e-20
Identity = 63/178 (35.39%), Postives = 93/178 (52.25%), Query Frame = 1

Query:  316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTP---EDAIIGLE--YIQERHPNFTI----KFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYAD 819
            S+TNLYI+GL    TD+D++ +      + S KA ++    KCKGYGF+DF  P   E A+ GL+   +Q +     I    + A + E+D TNLYI NLP  +   D   L+++  KYG++ S  I+ ++  N   GVGF R    E  +  I     N    ++D   PL  K+AD
Sbjct:   19 SKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVKGLQGKGVQAQMAKVGIWVLHRPAIQQEQDPTNLYIANLPPHFKETD---LEAMLSKYGQVVSTRILRDQQMNS-KGVGFARMESREKCEQIIQMFNGNTIPGAKD---PLLVKFAD 189

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BLAST of RNA binding motif single stranded interacting vs. Ensembl Fly
Match: shep (gene:FBgn0052423 transcript:FBtr0333289)

HSP 1 Score: 90.8929 bits (224), Expect = 1.617e-19
Identity = 62/176 (35.23%), Postives = 90/176 (51.14%), Query Frame = 1

Query:  316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTP---EDAIIGLE--YIQERHPNFTIKFAKEN--EKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYAD 819
            S+TNLYI+GL    TD+D++ +      + S KA ++    KCKGYGF+DF  P   E A+ GL+   +Q +     I        E+D TNLYI NLP  +   D   L+++  KYG++ S  I+ ++  N   GVGF R    E  +  I     N    ++D   PL  K+AD
Sbjct:   19 SKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVKGLQGKGVQAQMAKVGIWVLHRPAIEQDPTNLYIANLPPHFKETD---LEAMLSKYGQVVSTRILRDQQMNS-KGVGFARMESREKCEQIIQMFNGNTIPGAKD---PLLVKFAD 187

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BLAST of RNA binding motif single stranded interacting vs. Ensembl Zebrafish
Match: rbms2a (RNA binding motif, single stranded interacting protein 2a [Source:ZFIN;Acc:ZDB-GENE-030912-2])

HSP 1 Score: 97.0561 bits (240), Expect = 1.953e-21
Identity = 65/219 (29.68%), Postives = 106/219 (48.40%), Query Frame = 1

Query:  253 NGNSNCYISSKEISNFNQI----------KTSRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSED---STGPLEAKYADKHNTDSRRKHSILKSG 867
            NG    Y+SS +    +            + S+TNLYI+GLH   TD+D+++L      + S KA ++    KCKGYGF+DF +P  A   +  ++        + AK+ E+D TNLYI+NLP    S D ++L+++ + +G++ S  I+ +       GVGF R    E  +  I      +          T PL  K+AD      + ++  L++G
Sbjct:   20 NGKKQAYVSSSQQMALSSPNSSSSSIAGEQLSKTNLYIRGLHPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVTALKST--GVQAQMAKQQEQDPTNLYISNLP---VSMDEQELEAMLKSFGQVISTRILRDANGTS-RGVGFARMESTEKCEAIIQHFNGKYIKTPPGVPVPTEPLLCKFADGGQKKRQNQNKYLQNG 232

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Zebrafish
Match: rbms2a (RNA binding motif, single stranded interacting protein 2a [Source:ZFIN;Acc:ZDB-GENE-030912-2])

HSP 1 Score: 97.0561 bits (240), Expect = 2.250e-21
Identity = 60/188 (31.91%), Postives = 97/188 (51.60%), Query Frame = 1

Query:  316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSED---STGPLEAKYADKHNTDSRRKHSILKSG 867
            S+TNLYI+GLH   TD+D+++L      + S KA ++    KCKGYGF+DF +P  A   +  ++        + AK+ E+D TNLYI+NLP    S D ++L+++ + +G++ S  I+ +       GVGF R    E  +  I      +          T PL  K+AD      + ++  L++G
Sbjct:   53 SKTNLYIRGLHPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVTALKST--GVQAQMAKQQEQDPTNLYISNLP---VSMDEQELEAMLKSFGQVISTRILRDANGTS-RGVGFARMESTEKCEAIIQHFNGKYIKTPPGVPVPTEPLLCKFADGGQKKRQNQNKYLQNG 234

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Zebrafish
Match: rbms2b (RNA binding motif, single stranded interacting protein 2b [Source:ZFIN;Acc:ZDB-GENE-040801-51])

HSP 1 Score: 94.3597 bits (233), Expect = 1.927e-20
Identity = 58/172 (33.72%), Postives = 89/172 (51.74%), Query Frame = 1

Query:  316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSED---STGPLEAKYAD 819
            S+TNLYI+GLH   TD+D+++L      + S KA ++    KCKGYGF+DF +P  A   +  ++        + AK+ E+D TNLYI+NLP S    D ++L+S+ + + ++ S  I+ +       GVGF R    E  +  I      +          T PL  K+AD
Sbjct:   56 SKTNLYIRGLHPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPASAQKAVTALKAS--GVQAQMAKQQEQDPTNLYISNLPLSM---DEQELESMLKPFSQVISTRILRDANGTS-RGVGFARMESTEKCEAIIQHFNGKYIKTPPGVAVPTEPLLCKFAD 221

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Zebrafish
Match: rbms2b (RNA binding motif, single stranded interacting protein 2b [Source:ZFIN;Acc:ZDB-GENE-040801-51])

HSP 1 Score: 94.3597 bits (233), Expect = 2.000e-20
Identity = 58/172 (33.72%), Postives = 89/172 (51.74%), Query Frame = 1

Query:  316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSED---STGPLEAKYAD 819
            S+TNLYI+GLH   TD+D+++L      + S KA ++    KCKGYGF+DF +P  A   +  ++        + AK+ E+D TNLYI+NLP S    D ++L+S+ + + ++ S  I+ +       GVGF R    E  +  I      +          T PL  K+AD
Sbjct:   56 SKTNLYIRGLHPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPASAQKAVTALKAS--GVQAQMAKQQEQDPTNLYISNLPLSM---DEQELESMLKPFSQVISTRILRDANGTS-RGVGFARMESTEKCEAIIQHFNGKYIKTPPGVAVPTEPLLCKFAD 221

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Zebrafish
Match: rbms1a (RNA binding motif, single stranded interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-4967])

HSP 1 Score: 93.2041 bits (230), Expect = 4.908e-20
Identity = 68/229 (29.69%), Postives = 114/229 (49.78%), Query Frame = 1

Query:  316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAIND-----LESNHQILSEDSTGPLEAKYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLTSPNGTQMLTAIVDNGYFKGPLFSG 984
            S+TNLYI+GL    TD D+++L      + S KA ++    KCKGYGF+DF +P  A   +  ++        + AK+ E+D TNLY++NLP    S D ++L+++ + +G++ S  I+ +       GVGF R    E     I+      ++S+  +L   ++ PL  K+AD      +++ S  K   NG+  + +    L+    T      + NGY+  P   G
Sbjct:   55 SKTNLYIRGLPPGTTDHDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPVSAQKAVAALKTN--GVQAQMAKQQEQDPTNLYLSNLP---VSMDEQELENLLKPFGQVVSTRILRDTNGMS-RGVGFARMESTEKCDAVISHFNGKFIKSSSGMLG--ASEPLLCKFADG---GQKKRQSQAKYIPNGRTWTRDAEVRLSGMTLTYDPNTALQNGYYAAPYAMG 272

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Xenopus
Match: rbms1 (RNA binding motif, single stranded interacting protein 1 [Source:NCBI gene;Acc:100036596])

HSP 1 Score: 99.7525 bits (247), Expect = 1.154e-22
Identity = 71/251 (28.29%), Postives = 119/251 (47.41%), Query Frame = 1

Query:  316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLE---AKYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLTSPNGTQMLTAIVDNGYFKGPLFSGLSGTANTNDVYNQYLLNFAAQSGF 1056
            S+TNLYI+GL  N TD+D+++L      + S KA ++    KCKGYGF+DF +P  A   +  ++        + AK+ E+D TNLYI+NLP    S D ++L+S+ + +G++ S  I+ +       GVGF R    E  +  I+             + P E    K+AD      + ++  +++G     +    + L   P      TA + NG++  P +S  +    T      Y+ +  +  GF
Sbjct:   28 SKTNLYIRGLSPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKAS--GVQAQMAKQQEQDPTNLYISNLP---LSMDEQELESMLKPFGQVISTRILRDSSGTS-RGVGFARMESTEKCEAVISHFNGKFIKTLPGVSAPAEPLLCKFADGGQKKRQNQNKYVQNGRAWPREGEAGMTLTYDPT-----TAAIQNGFYPTP-YSIATNRMITQTSITPYIASPVSTPGF 266

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Xenopus
Match: rbms1 (RNA binding motif, single stranded interacting protein 1 [Source:NCBI gene;Acc:100036596])

HSP 1 Score: 98.9821 bits (245), Expect = 2.324e-22
Identity = 67/223 (30.04%), Postives = 109/223 (48.88%), Query Frame = 1

Query:  316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLE---AKYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLTSPNGTQMLTAIVDNGYFKGP 972
            S+TNLYI+GL  N TD+D+++L      + S KA ++    KCKGYGF+DF +P  A   +  ++        + AK+ E+D TNLYI+NLP    S D ++L+S+ + +G++ S  I L   +    GVGF R    E  +  I+             + P E    K+AD      + ++  +++G     +    + L   P      TA + NG++  P
Sbjct:   28 SKTNLYIRGLSPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKAS--GVQAQMAKQQEQDPTNLYISNLP---LSMDEQELESMLKPFGQVISTRI-LRDSSGTSRGVGFARMESTEKCEAVISHFNGKFIKTLPGVSAPAEPLLCKFADGGQKKRQNQNKYVQNGRAWPREGEAGMTLTYDPT-----TAAIQNGFYPTP 239

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Xenopus
Match: rbms1 (RNA binding motif, single stranded interacting protein 1 [Source:NCBI gene;Acc:100036596])

HSP 1 Score: 98.5969 bits (244), Expect = 3.321e-22
Identity = 66/223 (29.60%), Postives = 109/223 (48.88%), Query Frame = 1

Query:  316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLE---AKYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLTSPNGTQMLTAIVDNGYFKGP 972
            S+TNLYI+GL  N TD+D+++L      + S KA ++    KCKGYGF+DF +P  A   +  +  +      + AK+ E+D TNLYI+NLP    S D ++L+S+ + +G++ S  I+ +       GVGF R    E  +  I+             + P E    K+AD      + ++  +++G     +    + L   P      TA + NG++  P
Sbjct:   28 SKTNLYIRGLSPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSAL--KASGVQAQMAKQQEQDPTNLYISNLP---LSMDEQELESMLKPFGQVISTRILRDSSGTS-RGVGFARMESTEKCEAVISHFNGKFIKTLPGVSAPAEPLLCKFADGGQKKRQNQNKYVQNGRAWPREGEAGMTLTYDPT-----TAAIQNGFYPTP 239

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Xenopus
Match: RBMS2 (RNA binding motif single stranded interacting protein 2 [Source:NCBI gene;Acc:100495159])

HSP 1 Score: 98.5969 bits (244), Expect = 3.719e-22
Identity = 66/224 (29.46%), Postives = 111/224 (49.55%), Query Frame = 1

Query:  316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLE---AKYADKHNTDSRRKHSILKSGIN-GKLQSSNQLPLLTSPNGTQMLTAIVDNGYFKGP 972
            S+TNLYI+GLH + TD+D+++L      + S KA ++    KCKGYGF+DF +P  A   +  ++        + AK+ E+D TNLYI+NLP    S D ++L+S+ + +G++ S  I+ +       GVGF R    E  +  I+     +         P E    K+AD      + +   +++G   G+   +  + L   P      T+ + NG++  P
Sbjct:   25 SKTNLYIRGLHPSTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPGAAQKAVTALKAS--GVQAQMAKQQEQDPTNLYISNLP---VSMDEQELESLLKPFGQVISTRILRDASGTS-RGVGFARMESTEKCEAVISHFNGKYIKTPPGVPAPQEPLLCKFADGGQKKRQTQGKYIQNGRGWGREGETGGMTLTYDP------TSALQNGFYTAP 236

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Xenopus
Match: RBMS2 (RNA binding motif single stranded interacting protein 2 [Source:NCBI gene;Acc:100495159])

HSP 1 Score: 98.9821 bits (245), Expect = 4.509e-22
Identity = 66/224 (29.46%), Postives = 111/224 (49.55%), Query Frame = 1

Query:  316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLE---AKYADKHNTDSRRKHSILKSGIN-GKLQSSNQLPLLTSPNGTQMLTAIVDNGYFKGP 972
            S+TNLYI+GLH + TD+D+++L      + S KA ++    KCKGYGF+DF +P  A   +  ++        + AK+ E+D TNLYI+NLP    S D ++L+S+ + +G++ S  I+ +       GVGF R    E  +  I+     +         P E    K+AD      + +   +++G   G+   +  + L   P      T+ + NG++  P
Sbjct:   30 SKTNLYIRGLHPSTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPGAAQKAVTALKAS--GVQAQMAKQQEQDPTNLYISNLP---VSMDEQELESLLKPFGQVISTRILRDASGTS-RGVGFARMESTEKCEAVISHFNGKYIKTPPGVPAPQEPLLCKFADGGQKKRQTQGKYIQNGRGWGREGETGGMTLTYDP------TSALQNGFYTAP 241

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Mouse
Match: Rbms1 (RNA binding motif, single stranded interacting protein 1 [Source:MGI Symbol;Acc:MGI:1861774])

HSP 1 Score: 94.7449 bits (234), Expect = 1.435e-20
Identity = 67/225 (29.78%), Postives = 108/225 (48.00%), Query Frame = 1

Query:  316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIED-DKKCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSED-----STGPLEAKYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLTSPNGTQMLTAIVDNGYFKGP 972
            S+TNLYI+GL  N TD+D+++L      + S KA ++    KCKGYGF+DF +P  A   +  ++        + AK+ E+D TNLYI+NLP    S D ++L+++ + +G++ S  + L   +    GVGF R    E  +  I     N + +         T PL  K+AD      +  +  + +G          + L   P      TA + NG++  P
Sbjct:   60 SKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSALKAN--GVQAQMAKQQEQDPTNLYISNLP---LSMDEQELENMLKPFGQVISTRV-LRDSSGASRGVGFARMESTEKCEAVIGHF--NGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWPRDGEAGMTLTYDPT-----TAALHNGFYPSP 271

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Mouse
Match: Rbms1 (RNA binding motif, single stranded interacting protein 1 [Source:MGI Symbol;Acc:MGI:1861774])

HSP 1 Score: 94.3597 bits (233), Expect = 1.671e-20
Identity = 67/225 (29.78%), Postives = 108/225 (48.00%), Query Frame = 1

Query:  316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIED-DKKCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILS-----EDSTGPLEAKYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLTSPNGTQMLTAIVDNGYFKGP 972
            S+TNLYI+GL  N TD+D+++L      + S KA ++    KCKGYGF+DF +P  A   +  ++        + AK+ E+D TNLYI+NLP    S D ++L+++ + +G++ S  + L   +    GVGF R    E  +  I     N + +         T PL  K+AD      +  +  + +G          + L   P      TA + NG++  P
Sbjct:   27 SKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSALKAN--GVQAQMAKQQEQDPTNLYISNLP---LSMDEQELENMLKPFGQVISTRV-LRDSSGASRGVGFARMESTEKCEAVIGHF--NGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWPRDGEAGMTLTYDPT-----TAALHNGFYPSP 238

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Mouse
Match: Rbms1 (RNA binding motif, single stranded interacting protein 1 [Source:MGI Symbol;Acc:MGI:1861774])

HSP 1 Score: 94.7449 bits (234), Expect = 1.881e-20
Identity = 67/225 (29.78%), Postives = 108/225 (48.00%), Query Frame = 1

Query:  316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIED-DKKCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILS-----EDSTGPLEAKYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLTSPNGTQMLTAIVDNGYFKGP 972
            S+TNLYI+GL  N TD+D+++L      + S KA ++    KCKGYGF+DF +P  A   +  ++        + AK+ E+D TNLYI+NLP    S D ++L+++ + +G++ S  + L   +    GVGF R    E  +  I     N + +         T PL  K+AD      +  +  + +G          + L   P      TA + NG++  P
Sbjct:   58 SKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSALKAN--GVQAQMAKQQEQDPTNLYISNLP---LSMDEQELENMLKPFGQVISTRV-LRDSSGASRGVGFARMESTEKCEAVIGHF--NGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWPRDGEAGMTLTYDPT-----TAALHNGFYPSP 269

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Mouse
Match: Rbms2 (RNA binding motif, single stranded interacting protein 2 [Source:MGI Symbol;Acc:MGI:1861776])

HSP 1 Score: 92.4337 bits (228), Expect = 6.154e-20
Identity = 68/227 (29.96%), Postives = 107/227 (47.14%), Query Frame = 1

Query:  316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTG---PLEAKYADKHNTDSRRKHSILKSGINGKLQSSN----QLPLLTSPNGTQMLTAIVDNGYFKGP 972
            S+TNLYI+GL    TD+D+++L      + S KA ++    KCKGYGF+DF +P  A   +  ++        + AK+ E+D TNLYI+NLP S    D ++L+ + + +G++ S  I L   +    GVGF R    E  +  I      +            PL  K+AD      +++ S  +   NG+    N     + L   P      TA + NG++  P
Sbjct:   28 SKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSSAQKAVTALKAS--GVQAQMAKQQEQDPTNLYISNLPLSM---DEQELEGMLKPFGQVISTRI-LRDTSGASRGVGFARMESTEKCEAIITHFNGKYIKTPPGVAAPSDPLLCKFADG---GPKKRQSQGRYVQNGRAWPRNGDMGGMALTYDP------TAALQNGFYAAP 239

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Mouse
Match: Rbms2 (RNA binding motif, single stranded interacting protein 2 [Source:MGI Symbol;Acc:MGI:1861776])

HSP 1 Score: 92.4337 bits (228), Expect = 6.522e-20
Identity = 69/228 (30.26%), Postives = 109/228 (47.81%), Query Frame = 1

Query:  316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTG----PLEAKYADKHNTDSRRKHSILKSGINGKLQSSN----QLPLLTSPNGTQMLTAIVDNGYFKGP 972
            S+TNLYI+GL    TD+D+++L      + S KA ++    KCKGYGF+DF +P  A   +  ++        + AK+ E+D TNLYI+NLP    S D ++L+ + + +G++ S  I L   +    GVGF R    E  +  I      + I +         PL  K+AD      +++ S  +   NG+    N     + L   P      TA + NG++  P
Sbjct:   28 SKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSSAQKAVTALKAS--GVQAQMAKQQEQDPTNLYISNLP---LSMDEQELEGMLKPFGQVISTRI-LRDTSGASRGVGFARMESTEKCEAIITHFNGKY-IKTPPGVAAPSDPLLCKFADG---GPKKRQSQGRYVQNGRAWPRNGDMGGMALTYDP------TAALQNGFYAAP 239

[Close]

BLAST of RNA binding motif single stranded interacting vs. UniProt/SwissProt
Match: sp|B3NGA1|SHEP_DROER (Protein alan shepard OS=Drosophila erecta OX=7220 GN=shep PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 4.939e-21
Identity = 60/169 (35.50%), Postives = 90/169 (53.25%), Query Frame = 1

Query:  316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYAD 819
            S+TNLYI+GL    TD+D++ +      + S KA ++    KCKGYGF+DF  P  A   ++ +Q +      + AK+ E+D TNLYI NLP  +   D   L+++  KYG++ S  I+ ++  N   GVGF R    E  +  I     N    ++D   PL  K+AD
Sbjct:  229 SKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVKGLQGK--GVQAQMAKQQEQDPTNLYIANLPPHFKETD---LEAMLSKYGQVVSTRILRDQQMNS-KGVGFARMESREKCEQIIQMFNGNTIPGAKD---PLLVKFAD 388

[Close]

BLAST of RNA binding motif single stranded interacting vs. UniProt/SwissProt
Match: sp|B4MM23|SHEP_DROWI (Protein alan shepard OS=Drosophila willistoni OX=7260 GN=shep PE=3 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 5.059e-21
Identity = 62/172 (36.05%), Postives = 91/172 (52.91%), Query Frame = 1

Query:  316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTP---EDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYAD 819
            S+TNLYI+GL    TD+D++ +      + S KA ++    KCKGYGF+DF  P   E+A+ GL+           + AK+ E+D TNLYI NLP  +   D   L+++  KYG++ S  I+ ++  N   GVGF R    E  +  I     N    ++D   PL  K+AD
Sbjct:  235 SKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAYAENAVKGLQAK-----GVQAQMAKQQEQDPTNLYIANLPPHFKETD---LEAMLSKYGQVVSTRILRDQQMNS-KGVGFARMESREKCEQIIQMFNGNTIPGAKD---PLLVKFAD 394

[Close]

BLAST of RNA binding motif single stranded interacting vs. UniProt/SwissProt
Match: sp|B4PIS2|SHEP_DROYA (Protein alan shepard OS=Drosophila yakuba OX=7245 GN=shep PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 5.167e-21
Identity = 60/169 (35.50%), Postives = 90/169 (53.25%), Query Frame = 1

Query:  316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYAD 819
            S+TNLYI+GL    TD+D++ +      + S KA ++    KCKGYGF+DF  P  A   ++ +Q +      + AK+ E+D TNLYI NLP  +   D   L+++  KYG++ S  I+ ++  N   GVGF R    E  +  I     N    ++D   PL  K+AD
Sbjct:  229 SKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVKGLQGK--GVQAQMAKQQEQDPTNLYIANLPPHFKETD---LEAMLSKYGQVVSTRILRDQQMNS-KGVGFARMESREKCEQIIQMFNGNTIPGAKD---PLLVKFAD 388

[Close]

BLAST of RNA binding motif single stranded interacting vs. UniProt/SwissProt
Match: sp|B4HUE4|SHEP_DROSE (Protein alan shepard OS=Drosophila sechellia OX=7238 GN=shep PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 5.262e-21
Identity = 60/169 (35.50%), Postives = 90/169 (53.25%), Query Frame = 1

Query:  316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYAD 819
            S+TNLYI+GL    TD+D++ +      + S KA ++    KCKGYGF+DF  P  A   ++ +Q +      + AK+ E+D TNLYI NLP  +   D   L+++  KYG++ S  I+ ++  N   GVGF R    E  +  I     N    ++D   PL  K+AD
Sbjct:  229 SKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVKGLQGK--GVQAQMAKQQEQDPTNLYIANLPPHFKETD---LEAMLSKYGQVVSTRILRDQQMNS-KGVGFARMESREKCEQIIQMFNGNTIPGAKD---PLLVKFAD 388

[Close]

BLAST of RNA binding motif single stranded interacting vs. UniProt/SwissProt
Match: sp|Q8MSV2|SHEP_DROME (Protein alan shepard OS=Drosophila melanogaster OX=7227 GN=shep PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 6.863e-21
Identity = 60/169 (35.50%), Postives = 90/169 (53.25%), Query Frame = 1

Query:  316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYAD 819
            S+TNLYI+GL    TD+D++ +      + S KA ++    KCKGYGF+DF  P  A   ++ +Q +      + AK+ E+D TNLYI NLP  +   D   L+++  KYG++ S  I+ ++  N   GVGF R    E  +  I     N    ++D   PL  K+AD
Sbjct:  241 SKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVKGLQGK--GVQAQMAKQQEQDPTNLYIANLPPHFKETD---LEAMLSKYGQVVSTRILRDQQMNS-KGVGFARMESREKCEQIIQMFNGNTIPGAKD---PLLVKFAD 400

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BLAST of RNA binding motif single stranded interacting vs. TrEMBL
Match: A0A4E0RJ17 (RNA binding motif single stranded interacting OS=Fasciola hepatica OX=6192 GN=D915_001041 PE=4 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 3.901e-67
Identity = 113/195 (57.95%), Postives = 149/195 (76.41%), Query Frame = 1

Query:  310 KTSRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDKKCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYADKHNTDSRRKHSILKSGINGKLQSSN 894
            K SRTNLYIKGL  +F+DE +  L PDQ+ +KSVKAA +DD KC+GYGFIDF+    AI  L++I+E +P FTIKFAKENEKDKTNLY+T+LPKSWT+KDSE+LKS+FE++G IQSAF+M+E+  N+  GVGFVRF +E  A  A++ + +N  +L E  T P+EAK+ADKHN D+RR+     + +   LQ+SN
Sbjct:  147 KVSRTNLYIKGLPDSFSDEKLWNLPPDQTQIKSVKAATDDDGKCRGYGFIDFVNETAAIDALKHIKETYPAFTIKFAKENEKDKTNLYVTHLPKSWTTKDSEQLKSVFERFGPIQSAFVMMERSTNRTTGVGFVRFANERDALAALDSIRTNPIMLPE-CTEPVEAKFADKHNPDTRRRRYPATTSV---LQASN 337

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BLAST of RNA binding motif single stranded interacting vs. TrEMBL
Match: A0A5K4F1A8 (Putative single-stranded DNA-binding protein mssp-1 OS=Schistosoma mansoni OX=6183 PE=4 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 4.081e-65
Identity = 107/179 (59.78%), Postives = 142/179 (79.33%), Query Frame = 1

Query:  310 KTSRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDKKCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYADKHNTDSRRK 846
            K SRTNLYIKGL  NF DE + QL PDQ+ +KSVKAA ++D KC+GYGFIDF++ + A   L+ I+E HP+FTIKFAKENEKDKTNLY+TNLP++WT+KDS++LK++FE++G IQSAF+M+E+  NK  GVGFVRF +E+ A  A+  L+  H +   D + P+EAK+ADKHN D+RR+
Sbjct:  158 KMSRTNLYIKGLPENFDDEQLWQLPPDQTKIKSVKAATDEDTKCRGYGFIDFVSEDAANEALQQIKETHPSFTIKFAKENEKDKTNLYVTNLPRTWTTKDSDQLKAVFERFGHIQSAFVMMERLTNKTTGVGFVRFVNEQDAVNALESLKL-HPLTLPDCSVPVEAKFADKHNPDTRRR 335

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BLAST of RNA binding motif single stranded interacting vs. TrEMBL
Match: A0A4Z2DT17 (RNA-binding motif, single-stranded-interacting protein OS=Schistosoma japonicum OX=6182 GN=EWB00_006577 PE=4 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.667e-64
Identity = 105/180 (58.33%), Postives = 142/180 (78.89%), Query Frame = 1

Query:  310 KTSRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDKKCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYADKHNTDSRRKH 849
            K SRTNLYIKGL  NF D+ + QL PDQ+ +KSVKAA ++D KC+GYGFIDF++ + A   L+ I+E +P+FTIKFAKENEKDKTNLY+TNLP++WT+KDS++LK++FE++G IQSAF+M+E+  NK  GVGFVRF +E+ A  A+  L+  H +   D + P+EAK+ADKHN D+RR+ 
Sbjct:  116 KMSRTNLYIKGLPENFDDDHLWQLPPDQTKIKSVKAATDEDTKCRGYGFIDFVSEDAANEALQQIKETYPSFTIKFAKENEKDKTNLYVTNLPRTWTTKDSDQLKAVFERFGHIQSAFVMMERLTNKTTGVGFVRFVNEQDAMNALESLKL-HPLTLPDCSVPIEAKFADKHNPDTRRRR 294

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BLAST of RNA binding motif single stranded interacting vs. TrEMBL
Match: A0A4S2M5S3 (Uncharacterized protein OS=Opisthorchis felineus OX=147828 GN=CRM22_002489 PE=4 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 5.845e-63
Identity = 106/188 (56.38%), Postives = 142/188 (75.53%), Query Frame = 1

Query:  310 KTSRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDKKCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYADKHNTDSRRKHSILKSGIN 873
            K SRTNLYIKGL  +F D+ +  L P    +KSVKAA +DD KC+GYGFIDF++ E A   L++I++ +P FTIKFAKENEKDKTNLY+TNLPKSWT+KDS++LK +FE++G IQSAF+M+E+  N+  GVGFVRF +E  A  A++ ++SN  IL E    P+EAK+ADKHN D+RR+   + + +N
Sbjct:  104 KMSRTNLYIKGLPDSFNDDKLWNLPPQGDQIKSVKAATDDDGKCRGYGFIDFISQEAANEALQHIRDTYPAFTIKFAKENEKDKTNLYVTNLPKSWTTKDSDQLKMVFERFGPIQSAFVMMERSTNRTTGVGFVRFANERDALAALDYIKSNPIILPE-CNNPVEAKFADKHNPDTRRRRYPMSTLLN 290

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BLAST of RNA binding motif single stranded interacting vs. TrEMBL
Match: A0A074ZGD5 (Uncharacterized protein (Fragment) OS=Opisthorchis viverrini OX=6198 GN=T265_14362 PE=4 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 2.899e-62
Identity = 105/188 (55.85%), Postives = 141/188 (75.00%), Query Frame = 1

Query:  310 KTSRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDKKCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYADKHNTDSRRKHSILKSGIN 873
            K SRTNLYIKGL  +F D+ +  L P    +KSVKAA +DD KC+GYGFIDF++ E A   L++I++ +P FTIKFAKENEKDKTNLY+TNLPKSWT+KDS++LK +FE++G IQSAF+M+E+  N+  GVGFVRF +E  A  A++ ++S   IL E    P+EAK+ADKHN D+RR+   + + +N
Sbjct:  104 KMSRTNLYIKGLPDSFNDDKLWNLPPQSDQIKSVKAATDDDGKCRGYGFIDFISQEAANEALQHIRDTYPAFTIKFAKENEKDKTNLYVTNLPKSWTTKDSDQLKMVFERFGPIQSAFVMMERSTNRTTGVGFVRFANERDALAALDYIKSTPIILPE-CNNPVEAKFADKHNPDTRRRRYPMSTLLN 290

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Cavefish
Match: rbms2b (RNA-binding motif, single-stranded-interacting protein 2-like [Source:NCBI gene;Acc:111194079])

HSP 1 Score: 96.2857 bits (238), Expect = 3.878e-21
Identity = 60/172 (34.88%), Postives = 89/172 (51.74%), Query Frame = 1

Query:  316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSED---STGPLEAKYAD 819
            SRTNLYI+GLH   TD+D+++L      + S KA ++    KCKGYGF+DF +P  A   +  ++        + AK+ E+D TNLYI+NLP S    D ++L+S+ + + ++ S  I L   +    GVGF R    E  +  I      +          T PL  K+AD
Sbjct:   67 SRTNLYIRGLHPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPASAQKAVTTLKAS--GVQAQMAKQQEQDPTNLYISNLPLSM---DEQELESMLKPFSQVISTRI-LRDASGASRGVGFARMESTEKCEAIIQHFNGKYIKTPPGVAVPTEPLLCKFAD 232

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Cavefish
Match: rbms2a (RNA-binding motif, single-stranded-interacting protein 2-like [Source:NCBI gene;Acc:103040012])

HSP 1 Score: 93.9745 bits (232), Expect = 2.135e-20
Identity = 51/145 (35.17%), Postives = 82/145 (56.55%), Query Frame = 1

Query:  316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAI 747
            S+TNLYI+GLH   TD+D+++L      + S KA ++    KCKGYGF+DF +P  A   +  ++        + AK+ E+D TNLYI+NLP    S D ++L+++ + +G++ S  ++ +       GVGF R    E  +  I
Sbjct:   56 SKTNLYIRGLHPGTTDQDLVKLCQPFGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVTALKSG--GVQAQMAKQQEQDPTNLYISNLP---VSMDEQELEAMLKSFGQVVSTRVLRDANGTS-RGVGFARMESTEKCEAII 194

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Cavefish
Match: rbms1a (RNA-binding motif, single-stranded-interacting protein 1 [Source:NCBI gene;Acc:103034850])

HSP 1 Score: 92.4337 bits (228), Expect = 5.857e-20
Identity = 68/232 (29.31%), Postives = 114/232 (49.14%), Query Frame = 1

Query:  316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAIND-----LESNHQILSEDSTGPLEAKYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLT---SPNGTQMLTAIVDNGYFKGPLFSG 984
            S+TNLYI+GL  + TD D+++L      + S KA ++    KCKGYGF+DF +P  A   +  ++        + AK+ E+D TNLY++NLP    S D ++L+++ + +G++ S  I+ + +     GVGF R    E     I+      ++S   +L   ++ PL  K+AD        +   + +G      +  +L  +T    PN T +      NGY+  P   G
Sbjct:   54 SKTNLYIRGLPPSTTDHDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPVSAQKAVAALKNN--GVQAQMAKQQEQDPTNLYLSNLP---VSMDEQELENLLKPFGQVISTRILRDAHGVS-RGVGFARMESTEKCDAVISHFNGKFIKSASGMLG--ASEPLLCKFADGGQKKRLSQSKYIPNGRTWTRDAEVRLSGITLTYDPNATAL-----QNGYYASPYSMG 272

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BLAST of RNA binding motif single stranded interacting vs. Ensembl Cavefish
Match: rbms3 (RNA binding motif single stranded interacting protein 3 [Source:NCBI gene;Acc:103030992])

HSP 1 Score: 91.2781 bits (225), Expect = 1.821e-19
Identity = 66/225 (29.33%), Postives = 108/225 (48.00%), Query Frame = 1

Query:  316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSED-----STGPLEAKYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLTSPNGTQMLTAIVDNGYFKGP 972
            S+TNLYI+GL    TD+D+++L      + S KA ++ +  +CKGYGF+DF +P  A   +  ++        + AK+ E+D TNLYI+NLP    S D ++L+++ + +G + S  I L   +    GVGF R    E   + I     N + L         T PL  K+AD      + +    ++G     +  + + L   P       A + NG++  P
Sbjct:   54 SKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVSSLKAS--GVQAQMAKQQEQDPTNLYISNLP---VSMDEQELENMLKPFGHVISTRI-LRDASGVSRGVGFARMESTEKCDVVIQHF--NGKFLKTPPGVPAPTEPLLCKFADGGQKKRQNQTKYPQNGRPWPREGESGMALPYDP-------AAMQNGFYSSP 263

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Cavefish
Match: rbms3 (RNA binding motif single stranded interacting protein 3 [Source:NCBI gene;Acc:103030992])

HSP 1 Score: 90.8929 bits (224), Expect = 2.188e-19
Identity = 66/225 (29.33%), Postives = 108/225 (48.00%), Query Frame = 1

Query:  316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSED-----STGPLEAKYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLTSPNGTQMLTAIVDNGYFKGP 972
            S+TNLYI+GL    TD+D+++L      + S KA ++ +  +CKGYGF+DF +P  A   +  ++        + AK+ E+D TNLYI+NLP    S D ++L+++ + +G + S  I L   +    GVGF R    E   + I     N + L         T PL  K+AD      + +    ++G     +  + + L   P       A + NG++  P
Sbjct:   54 SKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVSSLKAS--GVQAQMAKQQEQDPTNLYISNLP---VSMDEQELENMLKPFGHVISTRI-LRDASGVSRGVGFARMESTEKCDVVIQHF--NGKFLKTPPGVPAPTEPLLCKFADGGQKKRQNQTKYPQNGRPWPREGESGMALPYDP-------AAMQNGFYSSP 263

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Sea Lamprey
Match: ENSPMAT00000008168.1 (pep scaffold:Pmarinus_7.0:GL476829:41182:80090:-1 gene:ENSPMAG00000007358.1 transcript:ENSPMAT00000008168.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 90.8929 bits (224), Expect = 5.656e-20
Identity = 65/225 (28.89%), Postives = 107/225 (47.56%), Query Frame = 1

Query:  316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSED-----STGPLEAKYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLTSPNGTQMLTAIVDNGYFKGP 972
            S+TNLYI+GL    TD+D+++L      + S KA ++    +CKGYGF+DF  P  A   +  ++        + AK+ E+D TNLYI+NLP    + D ++L+ + +++G + S  I L        GVGF R    E  +  I     N + L+        + PL  K+AD         +  L++G   + ++   + L   P       A + NG++  P
Sbjct:   33 SKTNLYIRGLPPGTTDQDLVKLCQPYGKIVSTKAILDKTTNQCKGYGFVDFDGPSAAQKAVTALKAS--GIQAQMAKQQEQDPTNLYISNLP---VTIDEQELEGMLKQFGHVISTRI-LRDIVGTSRGVGFARMESTEKCEAVIQRF--NGKFLTSPPGVPVPSEPLLCKFADGGQKKRLSHNKYLQNGRAWQREAETGMTLTYDP------AAALHNGFYSTP 243

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Sea Lamprey
Match: RBMS2 (RNA binding motif single stranded interacting protein 2 [Source:HGNC Symbol;Acc:HGNC:9909])

HSP 1 Score: 86.6557 bits (213), Expect = 1.591e-18
Identity = 55/189 (29.10%), Postives = 91/189 (48.15%), Query Frame = 1

Query:  316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYADKHNTDSRRKHSILKSGINGK 879
            S+TNLYI+GL    TD+D+ +L      + S KA ++ +  +CKGYGF+ F +P  A   +  ++        + AK+ E+D TNLYI+NLP    S D ++L+ + + +G++ S  I+ +       GVGF R    E  +  I         +      P E       +   +++ S  K   NG+
Sbjct:   56 SKTNLYIRGLPPGTTDQDLTKLCQPYGKIVSTKAILDKNTNQCKGYGFVHFDSPAAAQKAVTALKAN--GVQAQMAKQQEQDPTNLYISNLP---LSMDEQELEGMLKPFGQVISTRILRDANGTS-RGVGFARMESTEKCEAVIQHFNGKFIQIPPGVPAPSEPLLCKFADGGQKKRQSQSKYTQNGR 238

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Sea Lamprey
Match: RBMS2 (RNA binding motif single stranded interacting protein 2 [Source:HGNC Symbol;Acc:HGNC:9909])

HSP 1 Score: 60.4622 bits (145), Expect = 2.311e-10
Identity = 34/104 (32.69%), Postives = 54/104 (51.92%), Query Frame = 1

Query:  445 GYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDL 756
            GYGF+DF +P  A   +  ++        + AK+ E+D TNLYI+NLP S    D ++L+ + + YG++ S  I+ +       GVGF R    E  +  I + 
Sbjct:    1 GYGFVDFDSPAAAQKAVSALKAN--GVQAQMAKQQEQDPTNLYISNLPMSM---DEQELEGMLKPYGQVISTRILRDANGTS-RGVGFARMESTEKCEAVIQNF 98

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Sea Lamprey
Match: pabpc4 (poly(A) binding protein, cytoplasmic 4 (inducible form) [Source:ZFIN;Acc:ZDB-GENE-030131-9663])

HSP 1 Score: 54.6842 bits (130), Expect = 3.624e-8
Identity = 54/211 (25.59%), Postives = 93/211 (44.08%), Query Frame = 1

Query:  310 KTSRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDKKCKGYGFIDFLTPEDAIIGLE-----YIQER--HPNFTIKFAKENEKDK---------TNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYADKHNTDSRRKHSILKSGINGKLQSSN 894
            K+   N++IK L  +  ++ +         + S K  + D+   +GYGF+ F T E A   +E      + +R     F  +F    E+++         TN+YI N        D +KL+  F K+G+  S  +M ++   K  G GFV F   E AQ A+N++  N + L+  +     A+   +   + +RK  +LK     + Q  N
Sbjct:   95 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILSCKV-VCDENGSRGYGFVHFETQEAADRAIEKMNGMLLNDRLARRRFVGRFKSRKEREQEMGARAKEFTNVYIKNF---GDDMDEDKLREFFGKFGKALSVCVMSDE-CGKSRGFGFVSFEQHEDAQRAVNEM--NGKELNGRTVFVGRAQKKGERQAELKRKFEMLKQERISRYQGVN 298

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Sea Lamprey
Match: ENSPMAT00000007448.1 (pep scaffold:Pmarinus_7.0:GL479027:131562:138944:-1 gene:ENSPMAG00000006727.1 transcript:ENSPMAT00000007448.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 50.0618 bits (118), Expect = 6.966e-8
Identity = 24/57 (42.11%), Postives = 38/57 (66.67%), Query Frame = 1

Query:  316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIED-DKKCKGYGFIDFLTPEDA 483
            S+TNLYI+GL  + +D+D+++L      + S KA ++    +CKGYGF+DF +P  A
Sbjct:   53 SKTNLYIRGLPPHTSDQDLVKLCHPYGKIVSTKAILDKTTNQCKGYGFVDFDSPTAA 109

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Yeast
Match: PAB1 (Poly(A) binding protein; part of the 3'-end RNA-processing complex, mediates interactions between the 5' cap structure and the 3' mRNA poly(A) tail, involved in control of poly(A) tail length, interacts with translation factor eIF-4G; stimulates, but is not required for the deadenylation activity of the Pan2p-Pan3p poly(A)-ribonuclease complex [Source:SGD;Acc:S000000967])

HSP 1 Score: 68.9366 bits (167), Expect = 5.823e-13
Identity = 70/234 (29.91%), Postives = 104/234 (44.44%), Query Frame = 1

Query:  271 YISSKEI-SNFNQIKTSRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDKKCKGYGFIDFLTPEDAIIGLEYIQERHPN----FTIKFAKENEK-------------------DKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYADKHNTDSRRKHSILKSGINGKLQSSNQL 900
            ++S KE  S   + K   TNLY+K ++S  TDE   +L      + S     + D K KG+GF+++   EDA+  +E + +   N    +  +  K+NE+                      NL++ NL  S    D EKL+  F  YG I SA +M  +   K  G GFV F   E A  AI   E N QI+   +  PL    A +   D RR      S +  ++Q+ NQ+
Sbjct:  201 HLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSV---DDEKLEEEFAPYGTITSAKVMRTENG-KSKGFGFVCFSTPEEATKAIT--EKNQQIV---AGKPLYVAIAQR--KDVRR------SQLAQQIQARNQM 417

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Nematostella
Match: EDO49588 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RGR7])

HSP 1 Score: 99.3673 bits (246), Expect = 3.213e-24
Identity = 65/175 (37.14%), Postives = 96/175 (54.86%), Query Frame = 1

Query:  310 KTSRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDKK-CKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQIL----SEDSTGPLEAKYAD 819
            K S+TNLYI+GL +N TD+D+++L      + S KA ++ D   CKGYGF+DF +P  A   +  +  +      + AK+ E+D TNLYI NLP++    D   L+++F KYG++ S  I+ +K  N   GVGF R    E  +  I D   N ++L    S      L  K+AD
Sbjct:   11 KLSKTNLYIRGLKANTTDDDLVRLCHKYGTIISTKAILDKDTNLCKGYGFVDFESPISAQKAVAALVNK--GIQAQMAKQQEQDPTNLYIQNLPQNC---DEAMLENMFSKYGKVISTRILRDKDTNSK-GVGFARMESAEKCEQVIKDF--NKKMLPGEVSLRCIQELVVKFAD 177

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Nematostella
Match: EDO33206 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SSV8])

HSP 1 Score: 62.7734 bits (151), Expect = 1.680e-10
Identity = 61/238 (25.63%), Postives = 96/238 (40.34%), Query Frame = 1

Query:  271 YISSKE-ISNFNQIKTSRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDKKCKGYGFIDFLTPEDAIIGLEYI------------------QERHPNFTIKFAKENEK-----DKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLT 912
            ++S KE I          TN+Y+K    +  DE + ++  +   + S+K   + + K KG+GF+ F TPE+A   +  +                   ER      +  K+ ++        NLYI NL       D E+L+  F  YG I SA +M +   N   G GFV F   E A  A+ ++  N +IL    + PL    A +      +  +     I+G      Q P  T
Sbjct:  176 WMSKKERIEKMGTQPKKFTNVYVKNFGDDMDDEQMKEICAEAGKIVSLKVMTDPEGKSKGFGFVSFETPEEAEEAVNVLNGKEIGGRRLWAGRAKKRAERAAEVKAEIEKKRQERINRFQGVNLYIKNLDDPI---DDERLREEFSPYGTISSAKVMKDDKGNS-KGFGFVCFSSPEEATKAVTEM--NGRIL---ISKPLYVALAQRREERKAQLAAQHMHRISGLRMHQGQRPFFT 404

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Nematostella
Match: EDO34879 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SN30])

HSP 1 Score: 59.3066 bits (142), Expect = 1.104e-9
Identity = 56/178 (31.46%), Postives = 93/178 (52.25%), Query Frame = 1

Query:  319 RTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDKKCK--GYGFIDFLTPEDAIIGLEYIQ-ERHPNFTIK--FAKEN--EKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYADKHNT 831
            RTNL I  +  + + EDI ++      V S K  I D    +  GY F+++  P+DA   +  +   R  N T+K  FA+ +  E    NLYI+ LPK       E+++++F+ +G+I ++ + L+  + +  G GFVRF     AQ AI+DL  N++ L   +   L  K+A+  N+
Sbjct:    9 RTNLIINYVPPSMSQEDIKKIFGTVGNVTSCKL-IRDRATGQSLGYAFVNYDNPDDANKAVREMNGARLQNKTLKVSFARPSSTEIKNANLYISGLPKDM---KEEEVEALFKPFGKIITSKV-LKDVSGEGRGTGFVRFDKRCEAQTAIDDL--NNKTLPGTNVK-LTVKFANPPNS 178

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Nematostella
Match: EDO42673 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S105])

HSP 1 Score: 55.8398 bits (133), Expect = 1.349e-8
Identity = 43/147 (29.25%), Postives = 70/147 (47.62%), Query Frame = 1

Query:  445 GYGFIDFLTPEDAIIGLEYIQERHPNFTI-------KFAK---ENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYADKHNTDSRRKHSI 855
            G+GF+D+ T EDA   ++ +      FTI        F++   +N K   NLY+ N+PK     +    +  FE YG I +  ++ +K    P G GFV +  +  AQ AI+ L          ST  L+ +YAD ++   R  +++
Sbjct:   47 GFGFVDYNTTEDAQKAIDKLN----GFTIGNKVLKVAFSRPGGDNTKG-ANLYVCNIPKQLPEAE---FRKAFEAYGNIVNCRLLRDKSTGLPKGCGFVLYDKKAEAQAAISSLSGT---FFPGSTMGLQIRYADDNSAKVRPPNNV 182

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Nematostella
Match: EDO30576 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T0E1])

HSP 1 Score: 50.0618 bits (118), Expect = 1.386e-6
Identity = 34/126 (26.98%), Postives = 55/126 (43.65%), Query Frame = 1

Query:  550 EKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLTSPNGT 927
            + +   L++  +P++W  KD   L+ IFE YG+I    I+ +KY  +  G  F+ F   ++   A   L     +       P++ K AD       RK   L  G+  K      L ++ SP GT
Sbjct:   16 DSNSVKLFVGQVPRTWEEKD---LRPIFEPYGQIYELTILKDKYTGQHKGCAFLTFCSRDACNAAQKHLHEKKTLPGMHH--PIQVKPADSETKSDDRK---LFVGMISKHAKEEDLRVMFSPFGT 133

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Medaka
Match: rbms1a (RNA-binding motif, single-stranded-interacting protein 1 [Source:NCBI gene;Acc:101157928])

HSP 1 Score: 102.064 bits (253), Expect = 2.442e-23
Identity = 74/224 (33.04%), Postives = 111/224 (49.55%), Query Frame = 1

Query:  316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTG---PLEAKYADKHNTDSRRKHSILKSGINGKLQSSN----QLPLLTSPNGTQMLTAIVDNGYF 963
            S+TNLYI+GL    TD D+++L      ++S KA ++    KCKGYGF+DF +P  A+  +  ++        + AK+ E+D TNLYI+NLP S   K+ EK+    + +G++ S  I L  Y+    GVGF R    E     I+        L+  S     PL  K+AD      R+KH    SGI    Q+ +     + L   P+     +A + NGY+
Sbjct:   39 SKTNLYIRGLPPATTDLDLVKLCHQYGKIQSAKAILDKTTNKCKGYGFVDFDSPAAALKAVHALKTS--GIQAQMAKQQEQDPTNLYISNLPLSVDEKELEKM---LQPFGQVVSTRI-LRDYSGNSRGVGFARMDTTEQCNGVISHFNGKFLKLASGSLAPSQPLLCKFADSQ----RKKHG--HSGITPSAQTGDLRLGAMTLTYDPS-----SAAIQNGYY 245

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Medaka
Match: rbms1a (RNA-binding motif, single-stranded-interacting protein 1 [Source:NCBI gene;Acc:101157928])

HSP 1 Score: 101.679 bits (252), Expect = 2.562e-23
Identity = 74/224 (33.04%), Postives = 111/224 (49.55%), Query Frame = 1

Query:  316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTG---PLEAKYADKHNTDSRRKHSILKSGINGKLQSSN----QLPLLTSPNGTQMLTAIVDNGYF 963
            S+TNLYI+GL    TD D+++L      ++S KA ++    KCKGYGF+DF +P  A+  +  ++        + AK+ E+D TNLYI+NLP S   K+ EK+    + +G++ S  I L  Y+    GVGF R    E     I+        L+  S     PL  K+AD      R+KH    SGI    Q+ +     + L   P+     +A + NGY+
Sbjct:   39 SKTNLYIRGLPPATTDLDLVKLCHQYGKIQSAKAILDKTTNKCKGYGFVDFDSPAAALKAVHALKTS--GIQAQMAKQQEQDPTNLYISNLPLSVDEKELEKM---LQPFGQVVSTRI-LRDYSGNSRGVGFARMDTTEQCNGVISHFNGKFLKLASGSLAPSQPLLCKFADSQ----RKKHG--HSGITPSAQTGDLRLGAMTLTYDPS-----SAAIQNGYY 245

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Medaka
Match: rbms2a (RNA-binding motif, single-stranded-interacting protein 2 [Source:NCBI gene;Acc:101164552])

HSP 1 Score: 97.0561 bits (240), Expect = 1.441e-21
Identity = 62/190 (32.63%), Postives = 98/190 (51.58%), Query Frame = 1

Query:  316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSED-----STGPLEAKYADKHNTDSRRKHSILKSG 867
            S+TNLYI+GLH   TD+D+++L      + S KA ++    KCKGYGF+DF +P  A   +  ++        + AK+ E+D TNLYI+NLP    S D ++L+S+ + +G++ S  I+ +       GVGF R    E  +  I     N + +         T PL  K+AD      + +   L++G
Sbjct:   23 SKTNLYIRGLHPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVTALKSS--GVQAQMAKQQEQDPTNLYISNLP---VSMDEQELESMLKPFGQVISTRILRDANGTS-RGVGFARMESTEKCEAIIQHF--NGKFIKTPPGVPAPTEPLLCKFADGGQKKRQSQGKYLQNG 204

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Medaka
Match: rbms2a (RNA-binding motif, single-stranded-interacting protein 2 [Source:NCBI gene;Acc:101164552])

HSP 1 Score: 97.0561 bits (240), Expect = 1.514e-21
Identity = 62/190 (32.63%), Postives = 98/190 (51.58%), Query Frame = 1

Query:  316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSED-----STGPLEAKYADKHNTDSRRKHSILKSG 867
            S+TNLYI+GLH   TD+D+++L      + S KA ++    KCKGYGF+DF +P  A   +  ++        + AK+ E+D TNLYI+NLP    S D ++L+S+ + +G++ S  I+ +       GVGF R    E  +  I     N + +         T PL  K+AD      + +   L++G
Sbjct:   41 SKTNLYIRGLHPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVTALKSS--GVQAQMAKQQEQDPTNLYISNLP---VSMDEQELESMLKPFGQVISTRILRDANGTS-RGVGFARMESTEKCEAIIQHF--NGKFIKTPPGVPAPTEPLLCKFADGGQKKRQSQGKYLQNG 222

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Medaka
Match: rbms2b (RNA-binding motif, single-stranded-interacting protein 2 [Source:NCBI gene;Acc:101171488])

HSP 1 Score: 95.1301 bits (235), Expect = 6.641e-21
Identity = 62/196 (31.63%), Postives = 97/196 (49.49%), Query Frame = 1

Query:  292 SNFNQIKTSRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLE---AKYADKHNTDSRRKHSILKSG 867
            +N+   + S+TNLYI+GLH   TD+D+++L      + S KA ++    KCKGYGF+DF +P  A   +  ++        + AK+ E+D TNLYI+NLP    S D ++L+++ + + +  S  I L   +    GVGF R    E  +  I               GP E    K+AD      + +   L+SG
Sbjct:   40 TNYGGEQLSKTNLYIRGLHPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPASAQKAVTALKAG--GVQAQMAKQQEQDPTNLYISNLP---LSMDEQELENMLKPFSQAISTRI-LRDASGTSRGVGFARMESTEKCEAIIQHFNGKFIKTPPGVQGPPEPLLCKFADGGQKKRQSQGKYLQSG 229

[Close]

BLAST of RNA binding motif single stranded interacting vs. Planmine SMEST
Match: SMESG000005941.1 (SMESG000005941.1)

HSP 1 Score: 691.804 bits (1784), Expect = 0.000e+0
Identity = 376/376 (100.00%), Postives = 376/376 (100.00%), Query Frame = 1

Query:  208 MIINSSSILKLQPKMNGNSNCYISSKEISNFNQIKTSRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDKKCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLTSPNGTQMLTAIVDNGYFKGPLFSGLSGTANTNDVYNQYLLNFAAQSGFMDXXXXXXXXXXXXXXXXXLGPYGDNPSSFGSYYSNLFYPIQNGIQGWKGNPISTTTMPVTXXXXXXXXXXXXXXXHQSLSGSQPTLNFNQLV 1335
            MIINSSSILKLQPKMNGNSNCYISSKEISNFNQIKTSRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDKKCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLTSPNGTQMLTAIVDNGYFKGPLFSGLSGTANTNDVYNQYLLNFAAQSGFMDPYYLLPAVLAPPSPVSYLGPYGDNPSSFGSYYSNLFYPIQNGIQGWKGNPISTTTMPVTGPFVVSSPGSTSTVPHQSLSGSQPTLNFNQLV
Sbjct:    1 MIINSSSILKLQPKMNGNSNCYISSKEISNFNQIKTSRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDKKCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLTSPNGTQMLTAIVDNGYFKGPLFSGLSGTANTNDVYNQYLLNFAAQSGFMDPYYLLPAVLAPPSPVSYLGPYGDNPSSFGSYYSNLFYPIQNGIQGWKGNPISTTTMPVTGPFVVSSPGSTSTVPHQSLSGSQPTLNFNQLV 376

[Close]

BLAST of RNA binding motif single stranded interacting vs. Planmine SMEST
Match: SMESG000005941.1 (SMESG000005941.1)

HSP 1 Score: 665.226 bits (1715), Expect = 0.000e+0
Identity = 362/362 (100.00%), Postives = 362/362 (100.00%), Query Frame = 1

Query:  250 MNGNSNCYISSKEISNFNQIKTSRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDKKCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLTSPNGTQMLTAIVDNGYFKGPLFSGLSGTANTNDVYNQYLLNFAAQSGFMDXXXXXXXXXXXXXXXXXLGPYGDNPSSFGSYYSNLFYPIQNGIQGWKGNPISTTTMPVTXXXXXXXXXXXXXXXHQSLSGSQPTLNFNQLV 1335
            MNGNSNCYISSKEISNFNQIKTSRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDKKCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLTSPNGTQMLTAIVDNGYFKGPLFSGLSGTANTNDVYNQYLLNFAAQSGFMDPYYLLPAVLAPPSPVSYLGPYGDNPSSFGSYYSNLFYPIQNGIQGWKGNPISTTTMPVTGPFVVSSPGSTSTVPHQSLSGSQPTLNFNQLV
Sbjct:    8 MNGNSNCYISSKEISNFNQIKTSRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDKKCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLTSPNGTQMLTAIVDNGYFKGPLFSGLSGTANTNDVYNQYLLNFAAQSGFMDPYYLLPAVLAPPSPVSYLGPYGDNPSSFGSYYSNLFYPIQNGIQGWKGNPISTTTMPVTGPFVVSSPGSTSTVPHQSLSGSQPTLNFNQLV 369

[Close]

BLAST of RNA binding motif single stranded interacting vs. Planmine SMEST
Match: SMESG000005941.1 (SMESG000005941.1)

HSP 1 Score: 664.84 bits (1714), Expect = 0.000e+0
Identity = 362/362 (100.00%), Postives = 362/362 (100.00%), Query Frame = 1

Query:  250 MNGNSNCYISSKEISNFNQIKTSRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDKKCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLTSPNGTQMLTAIVDNGYFKGPLFSGLSGTANTNDVYNQYLLNFAAQSGFMDXXXXXXXXXXXXXXXXXLGPYGDNPSSFGSYYSNLFYPIQNGIQGWKGNPISTTTMPVTXXXXXXXXXXXXXXXHQSLSGSQPTLNFNQLV 1335
            MNGNSNCYISSKEISNFNQIKTSRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDKKCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLTSPNGTQMLTAIVDNGYFKGPLFSGLSGTANTNDVYNQYLLNFAAQSGFMDPYYLLPAVLAPPSPVSYLGPYGDNPSSFGSYYSNLFYPIQNGIQGWKGNPISTTTMPVTGPFVVSSPGSTSTVPHQSLSGSQPTLNFNQLV
Sbjct:    1 MNGNSNCYISSKEISNFNQIKTSRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDKKCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLTSPNGTQMLTAIVDNGYFKGPLFSGLSGTANTNDVYNQYLLNFAAQSGFMDPYYLLPAVLAPPSPVSYLGPYGDNPSSFGSYYSNLFYPIQNGIQGWKGNPISTTTMPVTGPFVVSSPGSTSTVPHQSLSGSQPTLNFNQLV 362

[Close]

BLAST of RNA binding motif single stranded interacting vs. Planmine SMEST
Match: SMESG000028681.1 (SMESG000028681.1)

HSP 1 Score: 225.328 bits (573), Expect = 1.765e-68
Identity = 109/180 (60.56%), Postives = 136/180 (75.56%), Query Frame = 1

Query:  310 KTSRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDKKCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYADKHNTDSRRKH 849
            + S+TNLYIKGL  NF DE +  L PD++ +KS+KAA+E+D KCKGYGFIDFLT EDA   L YIQ ++P F  K+AKENEKDKTNLY+TN+PK WTSKDS+KLKS FEK+G IQSAFIM+EK  NK +GVGFVRF +E  A  A+  L+     L  D   P+EAK+ADKHN ++R++ 
Sbjct:   51 RQSKTNLYIKGLPENFNDESLESLVPDKTKIKSLKAALEEDFKCKGYGFIDFLTEEDAKDALTYIQTKNPGFNAKYAKENEKDKTNLYVTNIPKEWTSKDSDKLKSYFEKFGPIQSAFIMMEKSTNKTVGVGFVRFVYELHAYEALEKLQRGEDYLL-DCDKPIEAKFADKHNPETRKRR 229

[Close]

BLAST of RNA binding motif single stranded interacting vs. Planmine SMEST
Match: SMESG000028681.1 (SMESG000028681.1)

HSP 1 Score: 224.557 bits (571), Expect = 6.831e-68
Identity = 109/180 (60.56%), Postives = 136/180 (75.56%), Query Frame = 1

Query:  310 KTSRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDKKCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYADKHNTDSRRKH 849
            + S+TNLYIKGL  NF DE +  L PD++ +KS+KAA+E+D KCKGYGFIDFLT EDA   L YIQ ++P F  K+AKENEKDKTNLY+TN+PK WTSKDS+KLKS FEK+G IQSAFIM+EK  NK +GVGFVRF +E  A  A+  L+     L  D   P+EAK+ADKHN ++R++ 
Sbjct:   74 RQSKTNLYIKGLPENFNDESLESLVPDKTKIKSLKAALEEDFKCKGYGFIDFLTEEDAKDALTYIQTKNPGFNAKYAKENEKDKTNLYVTNIPKEWTSKDSDKLKSYFEKFGPIQSAFIMMEKSTNKTVGVGFVRFVYELHAYEALEKLQRGEDYLL-DCDKPIEAKFADKHNPETRKRR 252

The following BLAST results are available for this feature:

BLAST of RNA binding motif single stranded interacting vs. Ensembl Human
BLAST of RNA binding motif single stranded interacting vs. Ensembl Celegans
BLAST of RNA binding motif single stranded interacting vs. Ensembl Fly
BLAST of RNA binding motif single stranded interacting vs. Ensembl Zebrafish
BLAST of RNA binding motif single stranded interacting vs. Ensembl Xenopus
BLAST of RNA binding motif single stranded interacting vs. Ensembl Mouse
BLAST of RNA binding motif single stranded interacting vs. UniProt/SwissProt
BLAST of RNA binding motif single stranded interacting vs. TrEMBL
BLAST of RNA binding motif single stranded interacting vs. Ensembl Cavefish
BLAST of RNA binding motif single stranded interacting vs. Ensembl Sea Lamprey
BLAST of RNA binding motif single stranded interacting vs. Ensembl Yeast
BLAST of RNA binding motif single stranded interacting vs. Ensembl Nematostella
BLAST of RNA binding motif single stranded interacting vs. Ensembl Medaka
BLAST of RNA binding motif single stranded interacting vs. Planmine SMEST

BLAST of RNA binding motif single stranded interacting vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
RBMS1	9.808e-21	29.33	RNA binding motif single stranded interacting prot...	[more]
RBMS1	9.808e-21	29.33	RNA binding motif single stranded interacting prot...	[more]
RBMS1	9.808e-21	29.33	RNA binding motif single stranded interacting prot...	[more]
RBMS1	9.182e-20	29.39	RNA binding motif single stranded interacting prot...	[more]
RBMS1	1.092e-19	29.39	RNA binding motif single stranded interacting prot...	[more]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5


Match Name	E-value	Identity	Description
sup-26	3.377e-18	32.99	SUPpressor [Source:UniProtKB/TrEMBL;Acc:D5MCQ8]	[more]
sup-26	3.377e-18	32.99	SUPpressor [Source:UniProtKB/TrEMBL;Acc:D5MCQ8]	[more]
sup-26	5.062e-18	33.97	SUPpressor [Source:UniProtKB/TrEMBL;Acc:D5MCQ8]	[more]
sup-26	5.062e-18	33.97	SUPpressor [Source:UniProtKB/TrEMBL;Acc:D5MCQ8]	[more]
sup-26	5.522e-18	32.99	SUPpressor [Source:UniProtKB/TrEMBL;Acc:D5MCQ8]	[more]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5


Match Name	E-value	Identity	Description
shep	5.426e-22	35.50	gene:FBgn0052423 transcript:FBtr0077172	[more]
shep	6.847e-22	35.50	gene:FBgn0052423 transcript:FBtr0308859	[more]
shep	1.589e-20	35.39	gene:FBgn0052423 transcript:FBtr0301599	[more]
shep	1.589e-20	35.39	gene:FBgn0052423 transcript:FBtr0333287	[more]
shep	1.617e-19	35.23	gene:FBgn0052423 transcript:FBtr0333289	[more]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
rbms2a	1.953e-21	29.68	RNA binding motif, single stranded interacting pro...	[more]
rbms2a	2.250e-21	31.91	RNA binding motif, single stranded interacting pro...	[more]
rbms2b	1.927e-20	33.72	RNA binding motif, single stranded interacting pro...	[more]
rbms2b	2.000e-20	33.72	RNA binding motif, single stranded interacting pro...	[more]
rbms1a	4.908e-20	29.69	RNA binding motif, single stranded interacting pro...	[more]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
rbms1	1.154e-22	28.29	RNA binding motif, single stranded interacting pro...	[more]
rbms1	2.324e-22	30.04	RNA binding motif, single stranded interacting pro...	[more]
rbms1	3.321e-22	29.60	RNA binding motif, single stranded interacting pro...	[more]
RBMS2	3.719e-22	29.46	RNA binding motif single stranded interacting prot...	[more]
RBMS2	4.509e-22	29.46	RNA binding motif single stranded interacting prot...	[more]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Rbms1	1.435e-20	29.78	RNA binding motif, single stranded interacting pro...	[more]
Rbms1	1.671e-20	29.78	RNA binding motif, single stranded interacting pro...	[more]
Rbms1	1.881e-20	29.78	RNA binding motif, single stranded interacting pro...	[more]
Rbms2	6.154e-20	29.96	RNA binding motif, single stranded interacting pro...	[more]
Rbms2	6.522e-20	30.26	RNA binding motif, single stranded interacting pro...	[more]

BLAST of RNA binding motif single stranded interacting vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|B3NGA1\|SHEP_DROER	4.939e-21	35.50	Protein alan shepard OS=Drosophila erecta OX=7220 ...	[more]
sp\|B4MM23\|SHEP_DROWI	5.059e-21	36.05	Protein alan shepard OS=Drosophila willistoni OX=7...	[more]
sp\|B4PIS2\|SHEP_DROYA	5.167e-21	35.50	Protein alan shepard OS=Drosophila yakuba OX=7245 ...	[more]
sp\|B4HUE4\|SHEP_DROSE	5.262e-21	35.50	Protein alan shepard OS=Drosophila sechellia OX=72...	[more]
sp\|Q8MSV2\|SHEP_DROME	6.863e-21	35.50	Protein alan shepard OS=Drosophila melanogaster OX...	[more]

BLAST of RNA binding motif single stranded interacting vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A4E0RJ17	3.901e-67	57.95	RNA binding motif single stranded interacting OS=F...	[more]
A0A5K4F1A8	4.081e-65	59.78	Putative single-stranded DNA-binding protein mssp-...	[more]
A0A4Z2DT17	1.667e-64	58.33	RNA-binding motif, single-stranded-interacting pro...	[more]
A0A4S2M5S3	5.845e-63	56.38	Uncharacterized protein OS=Opisthorchis felineus O...	[more]
A0A074ZGD5	2.899e-62	55.85	Uncharacterized protein (Fragment) OS=Opisthorchis...	[more]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
rbms2b	3.878e-21	34.88	RNA-binding motif, single-stranded-interacting pro...	[more]
rbms2a	2.135e-20	35.17	RNA-binding motif, single-stranded-interacting pro...	[more]
rbms1a	5.857e-20	29.31	RNA-binding motif, single-stranded-interacting pro...	[more]
rbms3	1.821e-19	29.33	RNA binding motif single stranded interacting prot...	[more]
rbms3	2.188e-19	29.33	RNA binding motif single stranded interacting prot...	[more]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ENSPMAT00000008168.1	5.656e-20	28.89	pep scaffold:Pmarinus_7.0:GL476829:41182:80090:-1 ...	[more]
RBMS2	1.591e-18	29.10	RNA binding motif single stranded interacting prot...	[more]
RBMS2	2.311e-10	32.69	RNA binding motif single stranded interacting prot...	[more]
pabpc4	3.624e-8	25.59	poly(A) binding protein, cytoplasmic 4 (inducible ...	[more]
ENSPMAT00000007448.1	6.966e-8	42.11	pep scaffold:Pmarinus_7.0:GL479027:131562:138944:-...	[more]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1


Match Name	E-value	Identity	Description
PAB1	5.823e-13	29.91	Poly(A) binding protein; part of the 3'-end RNA-pr...	[more]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5


Match Name	E-value	Identity	Description
EDO49588	3.213e-24	37.14	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO33206	1.680e-10	25.63	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO34879	1.104e-9	31.46	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO42673	1.349e-8	29.25	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO30576	1.386e-6	26.98	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5


Match Name	E-value	Identity	Description
rbms1a	2.442e-23	33.04	RNA-binding motif, single-stranded-interacting pro...	[more]
rbms1a	2.562e-23	33.04	RNA-binding motif, single-stranded-interacting pro...	[more]
rbms2a	1.441e-21	32.63	RNA-binding motif, single-stranded-interacting pro...	[more]
rbms2a	1.514e-21	32.63	RNA-binding motif, single-stranded-interacting pro...	[more]
rbms2b	6.641e-21	31.63	RNA-binding motif, single-stranded-interacting pro...	[more]

BLAST of RNA binding motif single stranded interacting vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000005941.1	0.000e+0	100.00	SMESG000005941.1	[more]
SMESG000005941.1	0.000e+0	100.00	SMESG000005941.1	[more]
SMESG000005941.1	0.000e+0	100.00	SMESG000005941.1	[more]
SMESG000028681.1	1.765e-68	60.56	SMESG000028681.1	[more]
SMESG000028681.1	6.831e-68	60.56	SMESG000028681.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30031493 ID=SMED30031493|Name=RNA binding motif single stranded interacting|organism=Schmidtea mediterranea sexual|type=transcript|length=1508bp
AAATCGTTAGAGAAGGAATATTTTTCTTTATATCTAATAATATTCGAAAT
AATGAACGTGATAATTCGAATATACAAGAAATGCTGCAATCCTATTCAGC
CAATCAAAACAAAGTTTACGTGTTCGATTCATTTCAACCTGTCACTAATT
GCTGCTGCACTATTCGGTTTGTACAAATCTAATTTGTCTATTATTTATCT
CTAATGGATGATAATTAATTCGTCTTCGATATTGAAATTGCAGCCTAAGA
TGAACGGAAATTCCAATTGTTACATATCTTCCAAAGAAATTTCAAATTTT
AATCAAATTAAAACCTCAAGAACCAATCTTTACATAAAAGGTCTACACAG
CAACTTCACCGATGAAGACATTCTCCAATTGGCACCAGATCAGTCACTGG
TCAAATCCGTAAAAGCAGCGATAGAAGATGATAAAAAGTGCAAAGGTTAT
GGATTTATAGACTTTCTTACTCCAGAAGATGCAATTATCGGATTGGAATA
TATCCAAGAGAGACATCCCAATTTCACAATTAAATTCGCAAAAGAAAACG
AAAAGGATAAAACTAATTTGTACATTACCAATCTCCCGAAATCCTGGACA
AGCAAAGACAGTGAAAAATTGAAAAGTATTTTTGAGAAATACGGCGAAAT
TCAATCGGCCTTCATTATGCTAGAAAAATACGCGAATAAACCATTGGGGG
TAGGGTTTGTGAGATTTTTCCATGAAGAATCGGCACAATTAGCAATTAAT
GATCTGGAAAGCAACCATCAAATATTGTCAGAAGATTCAACAGGTCCCCT
AGAAGCAAAATATGCAGATAAACATAATACAGATTCAAGGCGCAAACATT
CGATTCTTAAATCCGGAATTAATGGAAAATTACAAAGCTCAAACCAATTA
CCGCTATTGACAAGTCCAAATGGTACCCAGATGCTGACTGCTATAGTTGA
TAATGGTTATTTTAAAGGACCTCTATTTTCGGGTCTATCAGGAACTGCCA
ATACCAATGATGTATACAATCAGTATCTGTTAAATTTTGCTGCTCAATCT
GGATTCATGGATCCTTATTATTTATTACCAGCAGTTCTCGCTCCGCCGTC
ACCCGTTAGTTACCTCGGTCCTTATGGGGATAATCCCTCATCATTCGGAA
GCTATTATTCAAACCTATTCTATCCCATTCAAAACGGTATTCAAGGTTGG
AAAGGAAATCCGATTTCAACCACCACAATGCCTGTAACTGGACCATTTGT
TGTCTCAAGTCCTGGGTCAACTTCAACAGTTCCTCATCAATCTCTTTCGG
GAAGTCAGCCAACGCTAAATTTCAATCAACTAGTTTGAAAGCAAAAATAA
TAGTTCAGATTCCTTTGTGATGATAGAGTTGAAACTCATTATTTTAAGAA
CAATTACTTTGTTTTATCGATGGCTTATTGTAATTTCGATAAAATAGTAA
TGTTACTGTTATTTTAAGATGTTAAACCCTACATAAATGTATTGAACTTT
CAAAATAA

protein sequence of SMED30031493-orf-1

>SMED30031493-orf-1 ID=SMED30031493-orf-1|Name=SMED30031493-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=377bp
MIINSSSILKLQPKMNGNSNCYISSKEISNFNQIKTSRTNLYIKGLHSNF
TDEDILQLAPDQSLVKSVKAAIEDDKKCKGYGFIDFLTPEDAIIGLEYIQ
ERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQS
AFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEA
KYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLTSPNGTQMLTAIVDNG
YFKGPLFSGLSGTANTNDVYNQYLLNFAAQSGFMDPYYLLPAVLAPPSPV
SYLGPYGDNPSSFGSYYSNLFYPIQNGIQGWKGNPISTTTMPVTGPFVVS
SPGSTSTVPHQSLSGSQPTLNFNQLV*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **molecular function**
Term	Definition
GO:0003723	RNA binding
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000016	pharynx
PLANA:0000099	neuron
PLANA:0000101	muscle cell
PLANA:0000420	parapharyngeal region

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 40..111 e-value: 1.3E-5 score: 34.7 coord: 120..192 e-value: 1.2E-10 score: 51.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 41..93 e-value: 3.7E-7 score: 29.9 coord: 121..184 e-value: 5.3E-11 score: 42.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 39..113 score: 10.599
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 119..205 score: 14.419
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 30..92 e-value: 8.2E-10 score: 40.6
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 106..214 e-value: 4.5E-19 score: 70.5
None	No IPR available	PANTHER	PTHR24012:SF710	PROTEIN ALAN SHEPARD	coord: 33..235
None	No IPR available	PANTHER	PTHR24012	RNA BINDING PROTEIN	coord: 33..235
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 104..206
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 10..98