RNA binding motif single stranded interacting
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30031493 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 7
Homology
BLAST of RNA binding motif single stranded interacting vs. Ensembl Human
Match: RBMS1 (RNA binding motif single stranded interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:9907]) HSP 1 Score: 95.5153 bits (236), Expect = 9.808e-21 Identity = 66/225 (29.33%), Postives = 109/225 (48.44%), Query Frame = 1 Query: 316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSED-----STGPLEAKYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLTSPNGTQMLTAIVDNGYFKGP 972 S+TNLYI+GL + TD+D+++L + S KA ++ KCKGYGF+DF +P A + ++ + AK+ E+D TNLYI+NLP S D ++L+++ + +G++ S I+ + GVGF R E + I N + + T PL K+AD + + + +G + + L P TA + NG++ P Sbjct: 27 SKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKAS--GVQAQMAKQQEQDPTNLYISNLP---LSMDEQELENMLKPFGQVISTRILRDSSGTS-RGVGFARMESTEKCEAVIGHF--NGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWHREGEAGMTLTYDPT-----TAAIQNGFYPSP 238
BLAST of RNA binding motif single stranded interacting vs. Ensembl Human
Match: RBMS1 (RNA binding motif single stranded interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:9907]) HSP 1 Score: 95.5153 bits (236), Expect = 9.808e-21 Identity = 66/225 (29.33%), Postives = 109/225 (48.44%), Query Frame = 1 Query: 316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSED-----STGPLEAKYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLTSPNGTQMLTAIVDNGYFKGP 972 S+TNLYI+GL + TD+D+++L + S KA ++ KCKGYGF+DF +P A + ++ + AK+ E+D TNLYI+NLP S D ++L+++ + +G++ S I+ + GVGF R E + I N + + T PL K+AD + + + +G + + L P TA + NG++ P Sbjct: 27 SKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKAS--GVQAQMAKQQEQDPTNLYISNLP---LSMDEQELENMLKPFGQVISTRILRDSSGTS-RGVGFARMESTEKCEAVIGHF--NGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWHREGEAGMTLTYDPT-----TAAIQNGFYPSP 238
BLAST of RNA binding motif single stranded interacting vs. Ensembl Human
Match: RBMS1 (RNA binding motif single stranded interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:9907]) HSP 1 Score: 95.5153 bits (236), Expect = 9.808e-21 Identity = 66/225 (29.33%), Postives = 109/225 (48.44%), Query Frame = 1 Query: 316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSED-----STGPLEAKYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLTSPNGTQMLTAIVDNGYFKGP 972 S+TNLYI+GL + TD+D+++L + S KA ++ KCKGYGF+DF +P A + ++ + AK+ E+D TNLYI+NLP S D ++L+++ + +G++ S I+ + GVGF R E + I N + + T PL K+AD + + + +G + + L P TA + NG++ P Sbjct: 27 SKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKAS--GVQAQMAKQQEQDPTNLYISNLP---LSMDEQELENMLKPFGQVISTRILRDSSGTS-RGVGFARMESTEKCEAVIGHF--NGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWHREGEAGMTLTYDPT-----TAAIQNGFYPSP 238
BLAST of RNA binding motif single stranded interacting vs. Ensembl Human
Match: RBMS1 (RNA binding motif single stranded interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:9907]) HSP 1 Score: 92.8189 bits (229), Expect = 9.182e-20 Identity = 67/228 (29.39%), Postives = 111/228 (48.68%), Query Frame = 1 Query: 316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILS-----EDSTGPLEAKYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLT---SPNGTQMLTAIVDNGYFKGP 972 S+TNLYI+GL + TD+D+++L + S KA ++ KCKGYGF+DF +P A + ++ + AK+ E+D TNLYI+NLP S D ++L+++ + +G++ S I+ + GVGF R E + I N + + T PL K+AD + + + +G + +L +T P TA + NG++ P Sbjct: 40 SKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKAS--GVQAQMAKQQEQDPTNLYISNLP---LSMDEQELENMLKPFGQVISTRILRDSSGTS-RGVGFARMESTEKCEAVIGHF--NGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWHREGEVRLAGMTLTYDPT-----TAAIQNGFYPSP 254
BLAST of RNA binding motif single stranded interacting vs. Ensembl Human
Match: RBMS1 (RNA binding motif single stranded interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:9907]) HSP 1 Score: 92.8189 bits (229), Expect = 1.092e-19 Identity = 67/228 (29.39%), Postives = 111/228 (48.68%), Query Frame = 1 Query: 316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSED-----STGPLEAKYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLT---SPNGTQMLTAIVDNGYFKGP 972 S+TNLYI+GL + TD+D+++L + S KA ++ KCKGYGF+DF +P A + ++ + AK+ E+D TNLYI+NLP S D ++L+++ + +G++ S I+ + GVGF R E + I N + + T PL K+AD + + + +G + +L +T P TA + NG++ P Sbjct: 60 SKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKAS--GVQAQMAKQQEQDPTNLYISNLP---LSMDEQELENMLKPFGQVISTRILRDSSGTS-RGVGFARMESTEKCEAVIGHF--NGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWHREGEVRLAGMTLTYDPT-----TAAIQNGFYPSP 274
BLAST of RNA binding motif single stranded interacting vs. Ensembl Celegans
Match: sup-26 (SUPpressor [Source:UniProtKB/TrEMBL;Acc:D5MCQ8]) HSP 1 Score: 86.6557 bits (213), Expect = 3.377e-18 Identity = 64/194 (32.99%), Postives = 100/194 (51.55%), Query Frame = 1 Query: 283 KEISNFNQIKTSRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIED-DKKCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNH-QILSEDSTGP-LEAKYADKHNTDSRRKHSI 855 + SNFN +S TNLYI+GL N D+ + ++ + S KA ++ CKGYGF+DF +P+ A ++ + + ++ E+D TNLYI NLP +T + L++ K+G + S I L N+ GVGF R +E ++ I+ L +S++ GP L K AD T + KHS+ Sbjct: 95 RASSNFNTTPSS-TNLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDGLNTEGVQAQMAKLQQQEQDPTNLYIANLPLDFT---EQMLETELNKFGMVISTRI-LRTPDNQSRGVGFARMDSKEKCEVIISALNGGRFDTMSKE--GPALLIKQAD---TGRKSKHSM 278
BLAST of RNA binding motif single stranded interacting vs. Ensembl Celegans
Match: sup-26 (SUPpressor [Source:UniProtKB/TrEMBL;Acc:D5MCQ8]) HSP 1 Score: 86.6557 bits (213), Expect = 3.377e-18 Identity = 64/194 (32.99%), Postives = 100/194 (51.55%), Query Frame = 1 Query: 283 KEISNFNQIKTSRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIED-DKKCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNH-QILSEDSTGP-LEAKYADKHNTDSRRKHSI 855 + SNFN +S TNLYI+GL N D+ + ++ + S KA ++ CKGYGF+DF +P+ A ++ + + ++ E+D TNLYI NLP +T + L++ K+G + S I L N+ GVGF R +E ++ I+ L +S++ GP L K AD T + KHS+ Sbjct: 95 RASSNFNTTPSS-TNLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDGLNTEGVQAQMAKLQQQEQDPTNLYIANLPLDFT---EQMLETELNKFGMVISTRI-LRTPDNQSRGVGFARMDSKEKCEVIISALNGGRFDTMSKE--GPALLIKQAD---TGRKSKHSM 278
BLAST of RNA binding motif single stranded interacting vs. Ensembl Celegans
Match: sup-26 (SUPpressor [Source:UniProtKB/TrEMBL;Acc:D5MCQ8]) HSP 1 Score: 84.7297 bits (208), Expect = 5.062e-18 Identity = 53/156 (33.97%), Postives = 83/156 (53.21%), Query Frame = 1 Query: 292 SNFNQIKTSRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIED-DKKCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDL 756 SNFN +S TNLYI+GL N D+ + ++ + S KA ++ CKGYGF+DF +P+ A ++ + + ++ E+D TNLYI NLP +T + L++ K+G + S I L N+ GVGF R +E ++ I+ L Sbjct: 98 SNFNTTPSS-TNLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDGLNTEGVQAQMAKLQQQEQDPTNLYIANLPLDFT---EQMLETELNKFGMVISTRI-LRTPDNQSRGVGFARMDSKEKCEVIISAL 248
BLAST of RNA binding motif single stranded interacting vs. Ensembl Celegans
Match: sup-26 (SUPpressor [Source:UniProtKB/TrEMBL;Acc:D5MCQ8]) HSP 1 Score: 84.7297 bits (208), Expect = 5.062e-18 Identity = 53/156 (33.97%), Postives = 83/156 (53.21%), Query Frame = 1 Query: 292 SNFNQIKTSRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIED-DKKCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDL 756 SNFN +S TNLYI+GL N D+ + ++ + S KA ++ CKGYGF+DF +P+ A ++ + + ++ E+D TNLYI NLP +T + L++ K+G + S I L N+ GVGF R +E ++ I+ L Sbjct: 98 SNFNTTPSS-TNLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDGLNTEGVQAQMAKLQQQEQDPTNLYIANLPLDFT---EQMLETELNKFGMVISTRI-LRTPDNQSRGVGFARMDSKEKCEVIISAL 248
BLAST of RNA binding motif single stranded interacting vs. Ensembl Celegans
Match: sup-26 (SUPpressor [Source:UniProtKB/TrEMBL;Acc:D5MCQ8]) HSP 1 Score: 86.6557 bits (213), Expect = 5.522e-18 Identity = 64/194 (32.99%), Postives = 100/194 (51.55%), Query Frame = 1 Query: 283 KEISNFNQIKTSRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIED-DKKCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNH-QILSEDSTGP-LEAKYADKHNTDSRRKHSI 855 + SNFN +S TNLYI+GL N D+ + ++ + S KA ++ CKGYGF+DF +P+ A ++ + + ++ E+D TNLYI NLP +T + L++ K+G + S I L N+ GVGF R +E ++ I+ L +S++ GP L K AD T + KHS+ Sbjct: 95 RASSNFNTTPSS-TNLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDGLNTEGVQAQMAKLQQQEQDPTNLYIANLPLDFT---EQMLETELNKFGMVISTRI-LRTPDNQSRGVGFARMDSKEKCEVIISALNGGRFDTMSKE--GPALLIKQAD---TGRKSKHSM 278
BLAST of RNA binding motif single stranded interacting vs. Ensembl Fly
Match: shep (gene:FBgn0052423 transcript:FBtr0077172) HSP 1 Score: 99.7525 bits (247), Expect = 5.426e-22 Identity = 60/169 (35.50%), Postives = 90/169 (53.25%), Query Frame = 1 Query: 316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYAD 819 S+TNLYI+GL TD+D++ + + S KA ++ KCKGYGF+DF P A ++ +Q + + AK+ E+D TNLYI NLP + D L+++ KYG++ S I+ ++ N GVGF R E + I N ++D PL K+AD Sbjct: 229 SKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVKGLQGK--GVQAQMAKQQEQDPTNLYIANLPPHFKETD---LEAMLSKYGQVVSTRILRDQQMNS-KGVGFARMESREKCEQIIQMFNGNTIPGAKD---PLLVKFAD 388
BLAST of RNA binding motif single stranded interacting vs. Ensembl Fly
Match: shep (gene:FBgn0052423 transcript:FBtr0308859) HSP 1 Score: 99.7525 bits (247), Expect = 6.847e-22 Identity = 60/169 (35.50%), Postives = 90/169 (53.25%), Query Frame = 1 Query: 316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYAD 819 S+TNLYI+GL TD+D++ + + S KA ++ KCKGYGF+DF P A ++ +Q + + AK+ E+D TNLYI NLP + D L+++ KYG++ S I+ ++ N GVGF R E + I N ++D PL K+AD Sbjct: 241 SKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVKGLQGK--GVQAQMAKQQEQDPTNLYIANLPPHFKETD---LEAMLSKYGQVVSTRILRDQQMNS-KGVGFARMESREKCEQIIQMFNGNTIPGAKD---PLLVKFAD 400
BLAST of RNA binding motif single stranded interacting vs. Ensembl Fly
Match: shep (gene:FBgn0052423 transcript:FBtr0301599) HSP 1 Score: 93.9745 bits (232), Expect = 1.589e-20 Identity = 63/178 (35.39%), Postives = 93/178 (52.25%), Query Frame = 1 Query: 316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTP---EDAIIGLE--YIQERHPNFTI----KFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYAD 819 S+TNLYI+GL TD+D++ + + S KA ++ KCKGYGF+DF P E A+ GL+ +Q + I + A + E+D TNLYI NLP + D L+++ KYG++ S I+ ++ N GVGF R E + I N ++D PL K+AD Sbjct: 19 SKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVKGLQGKGVQAQMAKVGIWVLHRPAIQQEQDPTNLYIANLPPHFKETD---LEAMLSKYGQVVSTRILRDQQMNS-KGVGFARMESREKCEQIIQMFNGNTIPGAKD---PLLVKFAD 189
BLAST of RNA binding motif single stranded interacting vs. Ensembl Fly
Match: shep (gene:FBgn0052423 transcript:FBtr0333287) HSP 1 Score: 93.9745 bits (232), Expect = 1.589e-20 Identity = 63/178 (35.39%), Postives = 93/178 (52.25%), Query Frame = 1 Query: 316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTP---EDAIIGLE--YIQERHPNFTI----KFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYAD 819 S+TNLYI+GL TD+D++ + + S KA ++ KCKGYGF+DF P E A+ GL+ +Q + I + A + E+D TNLYI NLP + D L+++ KYG++ S I+ ++ N GVGF R E + I N ++D PL K+AD Sbjct: 19 SKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVKGLQGKGVQAQMAKVGIWVLHRPAIQQEQDPTNLYIANLPPHFKETD---LEAMLSKYGQVVSTRILRDQQMNS-KGVGFARMESREKCEQIIQMFNGNTIPGAKD---PLLVKFAD 189
BLAST of RNA binding motif single stranded interacting vs. Ensembl Fly
Match: shep (gene:FBgn0052423 transcript:FBtr0333289) HSP 1 Score: 90.8929 bits (224), Expect = 1.617e-19 Identity = 62/176 (35.23%), Postives = 90/176 (51.14%), Query Frame = 1 Query: 316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTP---EDAIIGLE--YIQERHPNFTIKFAKEN--EKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYAD 819 S+TNLYI+GL TD+D++ + + S KA ++ KCKGYGF+DF P E A+ GL+ +Q + I E+D TNLYI NLP + D L+++ KYG++ S I+ ++ N GVGF R E + I N ++D PL K+AD Sbjct: 19 SKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVKGLQGKGVQAQMAKVGIWVLHRPAIEQDPTNLYIANLPPHFKETD---LEAMLSKYGQVVSTRILRDQQMNS-KGVGFARMESREKCEQIIQMFNGNTIPGAKD---PLLVKFAD 187
BLAST of RNA binding motif single stranded interacting vs. Ensembl Zebrafish
Match: rbms2a (RNA binding motif, single stranded interacting protein 2a [Source:ZFIN;Acc:ZDB-GENE-030912-2]) HSP 1 Score: 97.0561 bits (240), Expect = 1.953e-21 Identity = 65/219 (29.68%), Postives = 106/219 (48.40%), Query Frame = 1 Query: 253 NGNSNCYISSKEISNFNQI----------KTSRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSED---STGPLEAKYADKHNTDSRRKHSILKSG 867 NG Y+SS + + + S+TNLYI+GLH TD+D+++L + S KA ++ KCKGYGF+DF +P A + ++ + AK+ E+D TNLYI+NLP S D ++L+++ + +G++ S I+ + GVGF R E + I + T PL K+AD + ++ L++G Sbjct: 20 NGKKQAYVSSSQQMALSSPNSSSSSIAGEQLSKTNLYIRGLHPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVTALKST--GVQAQMAKQQEQDPTNLYISNLP---VSMDEQELEAMLKSFGQVISTRILRDANGTS-RGVGFARMESTEKCEAIIQHFNGKYIKTPPGVPVPTEPLLCKFADGGQKKRQNQNKYLQNG 232
BLAST of RNA binding motif single stranded interacting vs. Ensembl Zebrafish
Match: rbms2a (RNA binding motif, single stranded interacting protein 2a [Source:ZFIN;Acc:ZDB-GENE-030912-2]) HSP 1 Score: 97.0561 bits (240), Expect = 2.250e-21 Identity = 60/188 (31.91%), Postives = 97/188 (51.60%), Query Frame = 1 Query: 316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSED---STGPLEAKYADKHNTDSRRKHSILKSG 867 S+TNLYI+GLH TD+D+++L + S KA ++ KCKGYGF+DF +P A + ++ + AK+ E+D TNLYI+NLP S D ++L+++ + +G++ S I+ + GVGF R E + I + T PL K+AD + ++ L++G Sbjct: 53 SKTNLYIRGLHPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVTALKST--GVQAQMAKQQEQDPTNLYISNLP---VSMDEQELEAMLKSFGQVISTRILRDANGTS-RGVGFARMESTEKCEAIIQHFNGKYIKTPPGVPVPTEPLLCKFADGGQKKRQNQNKYLQNG 234
BLAST of RNA binding motif single stranded interacting vs. Ensembl Zebrafish
Match: rbms2b (RNA binding motif, single stranded interacting protein 2b [Source:ZFIN;Acc:ZDB-GENE-040801-51]) HSP 1 Score: 94.3597 bits (233), Expect = 1.927e-20 Identity = 58/172 (33.72%), Postives = 89/172 (51.74%), Query Frame = 1 Query: 316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSED---STGPLEAKYAD 819 S+TNLYI+GLH TD+D+++L + S KA ++ KCKGYGF+DF +P A + ++ + AK+ E+D TNLYI+NLP S D ++L+S+ + + ++ S I+ + GVGF R E + I + T PL K+AD Sbjct: 56 SKTNLYIRGLHPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPASAQKAVTALKAS--GVQAQMAKQQEQDPTNLYISNLPLSM---DEQELESMLKPFSQVISTRILRDANGTS-RGVGFARMESTEKCEAIIQHFNGKYIKTPPGVAVPTEPLLCKFAD 221
BLAST of RNA binding motif single stranded interacting vs. Ensembl Zebrafish
Match: rbms2b (RNA binding motif, single stranded interacting protein 2b [Source:ZFIN;Acc:ZDB-GENE-040801-51]) HSP 1 Score: 94.3597 bits (233), Expect = 2.000e-20 Identity = 58/172 (33.72%), Postives = 89/172 (51.74%), Query Frame = 1 Query: 316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSED---STGPLEAKYAD 819 S+TNLYI+GLH TD+D+++L + S KA ++ KCKGYGF+DF +P A + ++ + AK+ E+D TNLYI+NLP S D ++L+S+ + + ++ S I+ + GVGF R E + I + T PL K+AD Sbjct: 56 SKTNLYIRGLHPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPASAQKAVTALKAS--GVQAQMAKQQEQDPTNLYISNLPLSM---DEQELESMLKPFSQVISTRILRDANGTS-RGVGFARMESTEKCEAIIQHFNGKYIKTPPGVAVPTEPLLCKFAD 221
BLAST of RNA binding motif single stranded interacting vs. Ensembl Zebrafish
Match: rbms1a (RNA binding motif, single stranded interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-4967]) HSP 1 Score: 93.2041 bits (230), Expect = 4.908e-20 Identity = 68/229 (29.69%), Postives = 114/229 (49.78%), Query Frame = 1 Query: 316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAIND-----LESNHQILSEDSTGPLEAKYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLTSPNGTQMLTAIVDNGYFKGPLFSG 984 S+TNLYI+GL TD D+++L + S KA ++ KCKGYGF+DF +P A + ++ + AK+ E+D TNLY++NLP S D ++L+++ + +G++ S I+ + GVGF R E I+ ++S+ +L ++ PL K+AD +++ S K NG+ + + L+ T + NGY+ P G Sbjct: 55 SKTNLYIRGLPPGTTDHDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPVSAQKAVAALKTN--GVQAQMAKQQEQDPTNLYLSNLP---VSMDEQELENLLKPFGQVVSTRILRDTNGMS-RGVGFARMESTEKCDAVISHFNGKFIKSSSGMLG--ASEPLLCKFADG---GQKKRQSQAKYIPNGRTWTRDAEVRLSGMTLTYDPNTALQNGYYAAPYAMG 272
BLAST of RNA binding motif single stranded interacting vs. Ensembl Xenopus
Match: rbms1 (RNA binding motif, single stranded interacting protein 1 [Source:NCBI gene;Acc:100036596]) HSP 1 Score: 99.7525 bits (247), Expect = 1.154e-22 Identity = 71/251 (28.29%), Postives = 119/251 (47.41%), Query Frame = 1 Query: 316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLE---AKYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLTSPNGTQMLTAIVDNGYFKGPLFSGLSGTANTNDVYNQYLLNFAAQSGF 1056 S+TNLYI+GL N TD+D+++L + S KA ++ KCKGYGF+DF +P A + ++ + AK+ E+D TNLYI+NLP S D ++L+S+ + +G++ S I+ + GVGF R E + I+ + P E K+AD + ++ +++G + + L P TA + NG++ P +S + T Y+ + + GF Sbjct: 28 SKTNLYIRGLSPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKAS--GVQAQMAKQQEQDPTNLYISNLP---LSMDEQELESMLKPFGQVISTRILRDSSGTS-RGVGFARMESTEKCEAVISHFNGKFIKTLPGVSAPAEPLLCKFADGGQKKRQNQNKYVQNGRAWPREGEAGMTLTYDPT-----TAAIQNGFYPTP-YSIATNRMITQTSITPYIASPVSTPGF 266
BLAST of RNA binding motif single stranded interacting vs. Ensembl Xenopus
Match: rbms1 (RNA binding motif, single stranded interacting protein 1 [Source:NCBI gene;Acc:100036596]) HSP 1 Score: 98.9821 bits (245), Expect = 2.324e-22 Identity = 67/223 (30.04%), Postives = 109/223 (48.88%), Query Frame = 1 Query: 316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLE---AKYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLTSPNGTQMLTAIVDNGYFKGP 972 S+TNLYI+GL N TD+D+++L + S KA ++ KCKGYGF+DF +P A + ++ + AK+ E+D TNLYI+NLP S D ++L+S+ + +G++ S I L + GVGF R E + I+ + P E K+AD + ++ +++G + + L P TA + NG++ P Sbjct: 28 SKTNLYIRGLSPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKAS--GVQAQMAKQQEQDPTNLYISNLP---LSMDEQELESMLKPFGQVISTRI-LRDSSGTSRGVGFARMESTEKCEAVISHFNGKFIKTLPGVSAPAEPLLCKFADGGQKKRQNQNKYVQNGRAWPREGEAGMTLTYDPT-----TAAIQNGFYPTP 239
BLAST of RNA binding motif single stranded interacting vs. Ensembl Xenopus
Match: rbms1 (RNA binding motif, single stranded interacting protein 1 [Source:NCBI gene;Acc:100036596]) HSP 1 Score: 98.5969 bits (244), Expect = 3.321e-22 Identity = 66/223 (29.60%), Postives = 109/223 (48.88%), Query Frame = 1 Query: 316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLE---AKYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLTSPNGTQMLTAIVDNGYFKGP 972 S+TNLYI+GL N TD+D+++L + S KA ++ KCKGYGF+DF +P A + + + + AK+ E+D TNLYI+NLP S D ++L+S+ + +G++ S I+ + GVGF R E + I+ + P E K+AD + ++ +++G + + L P TA + NG++ P Sbjct: 28 SKTNLYIRGLSPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSAL--KASGVQAQMAKQQEQDPTNLYISNLP---LSMDEQELESMLKPFGQVISTRILRDSSGTS-RGVGFARMESTEKCEAVISHFNGKFIKTLPGVSAPAEPLLCKFADGGQKKRQNQNKYVQNGRAWPREGEAGMTLTYDPT-----TAAIQNGFYPTP 239
BLAST of RNA binding motif single stranded interacting vs. Ensembl Xenopus
Match: RBMS2 (RNA binding motif single stranded interacting protein 2 [Source:NCBI gene;Acc:100495159]) HSP 1 Score: 98.5969 bits (244), Expect = 3.719e-22 Identity = 66/224 (29.46%), Postives = 111/224 (49.55%), Query Frame = 1 Query: 316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLE---AKYADKHNTDSRRKHSILKSGIN-GKLQSSNQLPLLTSPNGTQMLTAIVDNGYFKGP 972 S+TNLYI+GLH + TD+D+++L + S KA ++ KCKGYGF+DF +P A + ++ + AK+ E+D TNLYI+NLP S D ++L+S+ + +G++ S I+ + GVGF R E + I+ + P E K+AD + + +++G G+ + + L P T+ + NG++ P Sbjct: 25 SKTNLYIRGLHPSTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPGAAQKAVTALKAS--GVQAQMAKQQEQDPTNLYISNLP---VSMDEQELESLLKPFGQVISTRILRDASGTS-RGVGFARMESTEKCEAVISHFNGKYIKTPPGVPAPQEPLLCKFADGGQKKRQTQGKYIQNGRGWGREGETGGMTLTYDP------TSALQNGFYTAP 236
BLAST of RNA binding motif single stranded interacting vs. Ensembl Xenopus
Match: RBMS2 (RNA binding motif single stranded interacting protein 2 [Source:NCBI gene;Acc:100495159]) HSP 1 Score: 98.9821 bits (245), Expect = 4.509e-22 Identity = 66/224 (29.46%), Postives = 111/224 (49.55%), Query Frame = 1 Query: 316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLE---AKYADKHNTDSRRKHSILKSGIN-GKLQSSNQLPLLTSPNGTQMLTAIVDNGYFKGP 972 S+TNLYI+GLH + TD+D+++L + S KA ++ KCKGYGF+DF +P A + ++ + AK+ E+D TNLYI+NLP S D ++L+S+ + +G++ S I+ + GVGF R E + I+ + P E K+AD + + +++G G+ + + L P T+ + NG++ P Sbjct: 30 SKTNLYIRGLHPSTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPGAAQKAVTALKAS--GVQAQMAKQQEQDPTNLYISNLP---VSMDEQELESLLKPFGQVISTRILRDASGTS-RGVGFARMESTEKCEAVISHFNGKYIKTPPGVPAPQEPLLCKFADGGQKKRQTQGKYIQNGRGWGREGETGGMTLTYDP------TSALQNGFYTAP 241
BLAST of RNA binding motif single stranded interacting vs. Ensembl Mouse
Match: Rbms1 (RNA binding motif, single stranded interacting protein 1 [Source:MGI Symbol;Acc:MGI:1861774]) HSP 1 Score: 94.7449 bits (234), Expect = 1.435e-20 Identity = 67/225 (29.78%), Postives = 108/225 (48.00%), Query Frame = 1 Query: 316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIED-DKKCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSED-----STGPLEAKYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLTSPNGTQMLTAIVDNGYFKGP 972 S+TNLYI+GL N TD+D+++L + S KA ++ KCKGYGF+DF +P A + ++ + AK+ E+D TNLYI+NLP S D ++L+++ + +G++ S + L + GVGF R E + I N + + T PL K+AD + + + +G + L P TA + NG++ P Sbjct: 60 SKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSALKAN--GVQAQMAKQQEQDPTNLYISNLP---LSMDEQELENMLKPFGQVISTRV-LRDSSGASRGVGFARMESTEKCEAVIGHF--NGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWPRDGEAGMTLTYDPT-----TAALHNGFYPSP 271
BLAST of RNA binding motif single stranded interacting vs. Ensembl Mouse
Match: Rbms1 (RNA binding motif, single stranded interacting protein 1 [Source:MGI Symbol;Acc:MGI:1861774]) HSP 1 Score: 94.3597 bits (233), Expect = 1.671e-20 Identity = 67/225 (29.78%), Postives = 108/225 (48.00%), Query Frame = 1 Query: 316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIED-DKKCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILS-----EDSTGPLEAKYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLTSPNGTQMLTAIVDNGYFKGP 972 S+TNLYI+GL N TD+D+++L + S KA ++ KCKGYGF+DF +P A + ++ + AK+ E+D TNLYI+NLP S D ++L+++ + +G++ S + L + GVGF R E + I N + + T PL K+AD + + + +G + L P TA + NG++ P Sbjct: 27 SKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSALKAN--GVQAQMAKQQEQDPTNLYISNLP---LSMDEQELENMLKPFGQVISTRV-LRDSSGASRGVGFARMESTEKCEAVIGHF--NGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWPRDGEAGMTLTYDPT-----TAALHNGFYPSP 238
BLAST of RNA binding motif single stranded interacting vs. Ensembl Mouse
Match: Rbms1 (RNA binding motif, single stranded interacting protein 1 [Source:MGI Symbol;Acc:MGI:1861774]) HSP 1 Score: 94.7449 bits (234), Expect = 1.881e-20 Identity = 67/225 (29.78%), Postives = 108/225 (48.00%), Query Frame = 1 Query: 316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIED-DKKCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILS-----EDSTGPLEAKYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLTSPNGTQMLTAIVDNGYFKGP 972 S+TNLYI+GL N TD+D+++L + S KA ++ KCKGYGF+DF +P A + ++ + AK+ E+D TNLYI+NLP S D ++L+++ + +G++ S + L + GVGF R E + I N + + T PL K+AD + + + +G + L P TA + NG++ P Sbjct: 58 SKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSALKAN--GVQAQMAKQQEQDPTNLYISNLP---LSMDEQELENMLKPFGQVISTRV-LRDSSGASRGVGFARMESTEKCEAVIGHF--NGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWPRDGEAGMTLTYDPT-----TAALHNGFYPSP 269
BLAST of RNA binding motif single stranded interacting vs. Ensembl Mouse
Match: Rbms2 (RNA binding motif, single stranded interacting protein 2 [Source:MGI Symbol;Acc:MGI:1861776]) HSP 1 Score: 92.4337 bits (228), Expect = 6.154e-20 Identity = 68/227 (29.96%), Postives = 107/227 (47.14%), Query Frame = 1 Query: 316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTG---PLEAKYADKHNTDSRRKHSILKSGINGKLQSSN----QLPLLTSPNGTQMLTAIVDNGYFKGP 972 S+TNLYI+GL TD+D+++L + S KA ++ KCKGYGF+DF +P A + ++ + AK+ E+D TNLYI+NLP S D ++L+ + + +G++ S I L + GVGF R E + I + PL K+AD +++ S + NG+ N + L P TA + NG++ P Sbjct: 28 SKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSSAQKAVTALKAS--GVQAQMAKQQEQDPTNLYISNLPLSM---DEQELEGMLKPFGQVISTRI-LRDTSGASRGVGFARMESTEKCEAIITHFNGKYIKTPPGVAAPSDPLLCKFADG---GPKKRQSQGRYVQNGRAWPRNGDMGGMALTYDP------TAALQNGFYAAP 239
BLAST of RNA binding motif single stranded interacting vs. Ensembl Mouse
Match: Rbms2 (RNA binding motif, single stranded interacting protein 2 [Source:MGI Symbol;Acc:MGI:1861776]) HSP 1 Score: 92.4337 bits (228), Expect = 6.522e-20 Identity = 69/228 (30.26%), Postives = 109/228 (47.81%), Query Frame = 1 Query: 316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTG----PLEAKYADKHNTDSRRKHSILKSGINGKLQSSN----QLPLLTSPNGTQMLTAIVDNGYFKGP 972 S+TNLYI+GL TD+D+++L + S KA ++ KCKGYGF+DF +P A + ++ + AK+ E+D TNLYI+NLP S D ++L+ + + +G++ S I L + GVGF R E + I + I + PL K+AD +++ S + NG+ N + L P TA + NG++ P Sbjct: 28 SKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSSAQKAVTALKAS--GVQAQMAKQQEQDPTNLYISNLP---LSMDEQELEGMLKPFGQVISTRI-LRDTSGASRGVGFARMESTEKCEAIITHFNGKY-IKTPPGVAAPSDPLLCKFADG---GPKKRQSQGRYVQNGRAWPRNGDMGGMALTYDP------TAALQNGFYAAP 239
BLAST of RNA binding motif single stranded interacting vs. UniProt/SwissProt
Match: sp|B3NGA1|SHEP_DROER (Protein alan shepard OS=Drosophila erecta OX=7220 GN=shep PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 4.939e-21 Identity = 60/169 (35.50%), Postives = 90/169 (53.25%), Query Frame = 1 Query: 316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYAD 819 S+TNLYI+GL TD+D++ + + S KA ++ KCKGYGF+DF P A ++ +Q + + AK+ E+D TNLYI NLP + D L+++ KYG++ S I+ ++ N GVGF R E + I N ++D PL K+AD Sbjct: 229 SKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVKGLQGK--GVQAQMAKQQEQDPTNLYIANLPPHFKETD---LEAMLSKYGQVVSTRILRDQQMNS-KGVGFARMESREKCEQIIQMFNGNTIPGAKD---PLLVKFAD 388
BLAST of RNA binding motif single stranded interacting vs. UniProt/SwissProt
Match: sp|B4MM23|SHEP_DROWI (Protein alan shepard OS=Drosophila willistoni OX=7260 GN=shep PE=3 SV=2) HSP 1 Score: 100.138 bits (248), Expect = 5.059e-21 Identity = 62/172 (36.05%), Postives = 91/172 (52.91%), Query Frame = 1 Query: 316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTP---EDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYAD 819 S+TNLYI+GL TD+D++ + + S KA ++ KCKGYGF+DF P E+A+ GL+ + AK+ E+D TNLYI NLP + D L+++ KYG++ S I+ ++ N GVGF R E + I N ++D PL K+AD Sbjct: 235 SKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAYAENAVKGLQAK-----GVQAQMAKQQEQDPTNLYIANLPPHFKETD---LEAMLSKYGQVVSTRILRDQQMNS-KGVGFARMESREKCEQIIQMFNGNTIPGAKD---PLLVKFAD 394
BLAST of RNA binding motif single stranded interacting vs. UniProt/SwissProt
Match: sp|B4PIS2|SHEP_DROYA (Protein alan shepard OS=Drosophila yakuba OX=7245 GN=shep PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 5.167e-21 Identity = 60/169 (35.50%), Postives = 90/169 (53.25%), Query Frame = 1 Query: 316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYAD 819 S+TNLYI+GL TD+D++ + + S KA ++ KCKGYGF+DF P A ++ +Q + + AK+ E+D TNLYI NLP + D L+++ KYG++ S I+ ++ N GVGF R E + I N ++D PL K+AD Sbjct: 229 SKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVKGLQGK--GVQAQMAKQQEQDPTNLYIANLPPHFKETD---LEAMLSKYGQVVSTRILRDQQMNS-KGVGFARMESREKCEQIIQMFNGNTIPGAKD---PLLVKFAD 388
BLAST of RNA binding motif single stranded interacting vs. UniProt/SwissProt
Match: sp|B4HUE4|SHEP_DROSE (Protein alan shepard OS=Drosophila sechellia OX=7238 GN=shep PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 5.262e-21 Identity = 60/169 (35.50%), Postives = 90/169 (53.25%), Query Frame = 1 Query: 316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYAD 819 S+TNLYI+GL TD+D++ + + S KA ++ KCKGYGF+DF P A ++ +Q + + AK+ E+D TNLYI NLP + D L+++ KYG++ S I+ ++ N GVGF R E + I N ++D PL K+AD Sbjct: 229 SKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVKGLQGK--GVQAQMAKQQEQDPTNLYIANLPPHFKETD---LEAMLSKYGQVVSTRILRDQQMNS-KGVGFARMESREKCEQIIQMFNGNTIPGAKD---PLLVKFAD 388
BLAST of RNA binding motif single stranded interacting vs. UniProt/SwissProt
Match: sp|Q8MSV2|SHEP_DROME (Protein alan shepard OS=Drosophila melanogaster OX=7227 GN=shep PE=1 SV=2) HSP 1 Score: 99.7525 bits (247), Expect = 6.863e-21 Identity = 60/169 (35.50%), Postives = 90/169 (53.25%), Query Frame = 1 Query: 316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYAD 819 S+TNLYI+GL TD+D++ + + S KA ++ KCKGYGF+DF P A ++ +Q + + AK+ E+D TNLYI NLP + D L+++ KYG++ S I+ ++ N GVGF R E + I N ++D PL K+AD Sbjct: 241 SKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVKGLQGK--GVQAQMAKQQEQDPTNLYIANLPPHFKETD---LEAMLSKYGQVVSTRILRDQQMNS-KGVGFARMESREKCEQIIQMFNGNTIPGAKD---PLLVKFAD 400
BLAST of RNA binding motif single stranded interacting vs. TrEMBL
Match: A0A4E0RJ17 (RNA binding motif single stranded interacting OS=Fasciola hepatica OX=6192 GN=D915_001041 PE=4 SV=1) HSP 1 Score: 238.81 bits (608), Expect = 3.901e-67 Identity = 113/195 (57.95%), Postives = 149/195 (76.41%), Query Frame = 1 Query: 310 KTSRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDKKCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYADKHNTDSRRKHSILKSGINGKLQSSN 894 K SRTNLYIKGL +F+DE + L PDQ+ +KSVKAA +DD KC+GYGFIDF+ AI L++I+E +P FTIKFAKENEKDKTNLY+T+LPKSWT+KDSE+LKS+FE++G IQSAF+M+E+ N+ GVGFVRF +E A A++ + +N +L E T P+EAK+ADKHN D+RR+ + + LQ+SN Sbjct: 147 KVSRTNLYIKGLPDSFSDEKLWNLPPDQTQIKSVKAATDDDGKCRGYGFIDFVNETAAIDALKHIKETYPAFTIKFAKENEKDKTNLYVTHLPKSWTTKDSEQLKSVFERFGPIQSAFVMMERSTNRTTGVGFVRFANERDALAALDSIRTNPIMLPE-CTEPVEAKFADKHNPDTRRRRYPATTSV---LQASN 337
BLAST of RNA binding motif single stranded interacting vs. TrEMBL
Match: A0A5K4F1A8 (Putative single-stranded DNA-binding protein mssp-1 OS=Schistosoma mansoni OX=6183 PE=4 SV=1) HSP 1 Score: 234.958 bits (598), Expect = 4.081e-65 Identity = 107/179 (59.78%), Postives = 142/179 (79.33%), Query Frame = 1 Query: 310 KTSRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDKKCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYADKHNTDSRRK 846 K SRTNLYIKGL NF DE + QL PDQ+ +KSVKAA ++D KC+GYGFIDF++ + A L+ I+E HP+FTIKFAKENEKDKTNLY+TNLP++WT+KDS++LK++FE++G IQSAF+M+E+ NK GVGFVRF +E+ A A+ L+ H + D + P+EAK+ADKHN D+RR+ Sbjct: 158 KMSRTNLYIKGLPENFDDEQLWQLPPDQTKIKSVKAATDEDTKCRGYGFIDFVSEDAANEALQQIKETHPSFTIKFAKENEKDKTNLYVTNLPRTWTTKDSDQLKAVFERFGHIQSAFVMMERLTNKTTGVGFVRFVNEQDAVNALESLKL-HPLTLPDCSVPVEAKFADKHNPDTRRR 335
BLAST of RNA binding motif single stranded interacting vs. TrEMBL
Match: A0A4Z2DT17 (RNA-binding motif, single-stranded-interacting protein OS=Schistosoma japonicum OX=6182 GN=EWB00_006577 PE=4 SV=1) HSP 1 Score: 232.261 bits (591), Expect = 1.667e-64 Identity = 105/180 (58.33%), Postives = 142/180 (78.89%), Query Frame = 1 Query: 310 KTSRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDKKCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYADKHNTDSRRKH 849 K SRTNLYIKGL NF D+ + QL PDQ+ +KSVKAA ++D KC+GYGFIDF++ + A L+ I+E +P+FTIKFAKENEKDKTNLY+TNLP++WT+KDS++LK++FE++G IQSAF+M+E+ NK GVGFVRF +E+ A A+ L+ H + D + P+EAK+ADKHN D+RR+ Sbjct: 116 KMSRTNLYIKGLPENFDDDHLWQLPPDQTKIKSVKAATDEDTKCRGYGFIDFVSEDAANEALQQIKETYPSFTIKFAKENEKDKTNLYVTNLPRTWTTKDSDQLKAVFERFGHIQSAFVMMERLTNKTTGVGFVRFVNEQDAMNALESLKL-HPLTLPDCSVPIEAKFADKHNPDTRRRR 294
BLAST of RNA binding motif single stranded interacting vs. TrEMBL
Match: A0A4S2M5S3 (Uncharacterized protein OS=Opisthorchis felineus OX=147828 GN=CRM22_002489 PE=4 SV=1) HSP 1 Score: 225.713 bits (574), Expect = 5.845e-63 Identity = 106/188 (56.38%), Postives = 142/188 (75.53%), Query Frame = 1 Query: 310 KTSRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDKKCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYADKHNTDSRRKHSILKSGIN 873 K SRTNLYIKGL +F D+ + L P +KSVKAA +DD KC+GYGFIDF++ E A L++I++ +P FTIKFAKENEKDKTNLY+TNLPKSWT+KDS++LK +FE++G IQSAF+M+E+ N+ GVGFVRF +E A A++ ++SN IL E P+EAK+ADKHN D+RR+ + + +N Sbjct: 104 KMSRTNLYIKGLPDSFNDDKLWNLPPQGDQIKSVKAATDDDGKCRGYGFIDFISQEAANEALQHIRDTYPAFTIKFAKENEKDKTNLYVTNLPKSWTTKDSDQLKMVFERFGPIQSAFVMMERSTNRTTGVGFVRFANERDALAALDYIKSNPIILPE-CNNPVEAKFADKHNPDTRRRRYPMSTLLN 290
BLAST of RNA binding motif single stranded interacting vs. TrEMBL
Match: A0A074ZGD5 (Uncharacterized protein (Fragment) OS=Opisthorchis viverrini OX=6198 GN=T265_14362 PE=4 SV=1) HSP 1 Score: 223.787 bits (569), Expect = 2.899e-62 Identity = 105/188 (55.85%), Postives = 141/188 (75.00%), Query Frame = 1 Query: 310 KTSRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDKKCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYADKHNTDSRRKHSILKSGIN 873 K SRTNLYIKGL +F D+ + L P +KSVKAA +DD KC+GYGFIDF++ E A L++I++ +P FTIKFAKENEKDKTNLY+TNLPKSWT+KDS++LK +FE++G IQSAF+M+E+ N+ GVGFVRF +E A A++ ++S IL E P+EAK+ADKHN D+RR+ + + +N Sbjct: 104 KMSRTNLYIKGLPDSFNDDKLWNLPPQSDQIKSVKAATDDDGKCRGYGFIDFISQEAANEALQHIRDTYPAFTIKFAKENEKDKTNLYVTNLPKSWTTKDSDQLKMVFERFGPIQSAFVMMERSTNRTTGVGFVRFANERDALAALDYIKSTPIILPE-CNNPVEAKFADKHNPDTRRRRYPMSTLLN 290
BLAST of RNA binding motif single stranded interacting vs. Ensembl Cavefish
Match: rbms2b (RNA-binding motif, single-stranded-interacting protein 2-like [Source:NCBI gene;Acc:111194079]) HSP 1 Score: 96.2857 bits (238), Expect = 3.878e-21 Identity = 60/172 (34.88%), Postives = 89/172 (51.74%), Query Frame = 1 Query: 316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSED---STGPLEAKYAD 819 SRTNLYI+GLH TD+D+++L + S KA ++ KCKGYGF+DF +P A + ++ + AK+ E+D TNLYI+NLP S D ++L+S+ + + ++ S I L + GVGF R E + I + T PL K+AD Sbjct: 67 SRTNLYIRGLHPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPASAQKAVTTLKAS--GVQAQMAKQQEQDPTNLYISNLPLSM---DEQELESMLKPFSQVISTRI-LRDASGASRGVGFARMESTEKCEAIIQHFNGKYIKTPPGVAVPTEPLLCKFAD 232
BLAST of RNA binding motif single stranded interacting vs. Ensembl Cavefish
Match: rbms2a (RNA-binding motif, single-stranded-interacting protein 2-like [Source:NCBI gene;Acc:103040012]) HSP 1 Score: 93.9745 bits (232), Expect = 2.135e-20 Identity = 51/145 (35.17%), Postives = 82/145 (56.55%), Query Frame = 1 Query: 316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAI 747 S+TNLYI+GLH TD+D+++L + S KA ++ KCKGYGF+DF +P A + ++ + AK+ E+D TNLYI+NLP S D ++L+++ + +G++ S ++ + GVGF R E + I Sbjct: 56 SKTNLYIRGLHPGTTDQDLVKLCQPFGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVTALKSG--GVQAQMAKQQEQDPTNLYISNLP---VSMDEQELEAMLKSFGQVVSTRVLRDANGTS-RGVGFARMESTEKCEAII 194
BLAST of RNA binding motif single stranded interacting vs. Ensembl Cavefish
Match: rbms1a (RNA-binding motif, single-stranded-interacting protein 1 [Source:NCBI gene;Acc:103034850]) HSP 1 Score: 92.4337 bits (228), Expect = 5.857e-20 Identity = 68/232 (29.31%), Postives = 114/232 (49.14%), Query Frame = 1 Query: 316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAIND-----LESNHQILSEDSTGPLEAKYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLT---SPNGTQMLTAIVDNGYFKGPLFSG 984 S+TNLYI+GL + TD D+++L + S KA ++ KCKGYGF+DF +P A + ++ + AK+ E+D TNLY++NLP S D ++L+++ + +G++ S I+ + + GVGF R E I+ ++S +L ++ PL K+AD + + +G + +L +T PN T + NGY+ P G Sbjct: 54 SKTNLYIRGLPPSTTDHDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPVSAQKAVAALKNN--GVQAQMAKQQEQDPTNLYLSNLP---VSMDEQELENLLKPFGQVISTRILRDAHGVS-RGVGFARMESTEKCDAVISHFNGKFIKSASGMLG--ASEPLLCKFADGGQKKRLSQSKYIPNGRTWTRDAEVRLSGITLTYDPNATAL-----QNGYYASPYSMG 272
BLAST of RNA binding motif single stranded interacting vs. Ensembl Cavefish
Match: rbms3 (RNA binding motif single stranded interacting protein 3 [Source:NCBI gene;Acc:103030992]) HSP 1 Score: 91.2781 bits (225), Expect = 1.821e-19 Identity = 66/225 (29.33%), Postives = 108/225 (48.00%), Query Frame = 1 Query: 316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSED-----STGPLEAKYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLTSPNGTQMLTAIVDNGYFKGP 972 S+TNLYI+GL TD+D+++L + S KA ++ + +CKGYGF+DF +P A + ++ + AK+ E+D TNLYI+NLP S D ++L+++ + +G + S I L + GVGF R E + I N + L T PL K+AD + + ++G + + + L P A + NG++ P Sbjct: 54 SKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVSSLKAS--GVQAQMAKQQEQDPTNLYISNLP---VSMDEQELENMLKPFGHVISTRI-LRDASGVSRGVGFARMESTEKCDVVIQHF--NGKFLKTPPGVPAPTEPLLCKFADGGQKKRQNQTKYPQNGRPWPREGESGMALPYDP-------AAMQNGFYSSP 263
BLAST of RNA binding motif single stranded interacting vs. Ensembl Cavefish
Match: rbms3 (RNA binding motif single stranded interacting protein 3 [Source:NCBI gene;Acc:103030992]) HSP 1 Score: 90.8929 bits (224), Expect = 2.188e-19 Identity = 66/225 (29.33%), Postives = 108/225 (48.00%), Query Frame = 1 Query: 316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSED-----STGPLEAKYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLTSPNGTQMLTAIVDNGYFKGP 972 S+TNLYI+GL TD+D+++L + S KA ++ + +CKGYGF+DF +P A + ++ + AK+ E+D TNLYI+NLP S D ++L+++ + +G + S I L + GVGF R E + I N + L T PL K+AD + + ++G + + + L P A + NG++ P Sbjct: 54 SKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVSSLKAS--GVQAQMAKQQEQDPTNLYISNLP---VSMDEQELENMLKPFGHVISTRI-LRDASGVSRGVGFARMESTEKCDVVIQHF--NGKFLKTPPGVPAPTEPLLCKFADGGQKKRQNQTKYPQNGRPWPREGESGMALPYDP-------AAMQNGFYSSP 263
BLAST of RNA binding motif single stranded interacting vs. Ensembl Sea Lamprey
Match: ENSPMAT00000008168.1 (pep scaffold:Pmarinus_7.0:GL476829:41182:80090:-1 gene:ENSPMAG00000007358.1 transcript:ENSPMAT00000008168.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 90.8929 bits (224), Expect = 5.656e-20 Identity = 65/225 (28.89%), Postives = 107/225 (47.56%), Query Frame = 1 Query: 316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSED-----STGPLEAKYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLTSPNGTQMLTAIVDNGYFKGP 972 S+TNLYI+GL TD+D+++L + S KA ++ +CKGYGF+DF P A + ++ + AK+ E+D TNLYI+NLP + D ++L+ + +++G + S I L GVGF R E + I N + L+ + PL K+AD + L++G + ++ + L P A + NG++ P Sbjct: 33 SKTNLYIRGLPPGTTDQDLVKLCQPYGKIVSTKAILDKTTNQCKGYGFVDFDGPSAAQKAVTALKAS--GIQAQMAKQQEQDPTNLYISNLP---VTIDEQELEGMLKQFGHVISTRI-LRDIVGTSRGVGFARMESTEKCEAVIQRF--NGKFLTSPPGVPVPSEPLLCKFADGGQKKRLSHNKYLQNGRAWQREAETGMTLTYDP------AAALHNGFYSTP 243
BLAST of RNA binding motif single stranded interacting vs. Ensembl Sea Lamprey
Match: RBMS2 (RNA binding motif single stranded interacting protein 2 [Source:HGNC Symbol;Acc:HGNC:9909]) HSP 1 Score: 86.6557 bits (213), Expect = 1.591e-18 Identity = 55/189 (29.10%), Postives = 91/189 (48.15%), Query Frame = 1 Query: 316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYADKHNTDSRRKHSILKSGINGK 879 S+TNLYI+GL TD+D+ +L + S KA ++ + +CKGYGF+ F +P A + ++ + AK+ E+D TNLYI+NLP S D ++L+ + + +G++ S I+ + GVGF R E + I + P E + +++ S K NG+ Sbjct: 56 SKTNLYIRGLPPGTTDQDLTKLCQPYGKIVSTKAILDKNTNQCKGYGFVHFDSPAAAQKAVTALKAN--GVQAQMAKQQEQDPTNLYISNLP---LSMDEQELEGMLKPFGQVISTRILRDANGTS-RGVGFARMESTEKCEAVIQHFNGKFIQIPPGVPAPSEPLLCKFADGGQKKRQSQSKYTQNGR 238
BLAST of RNA binding motif single stranded interacting vs. Ensembl Sea Lamprey
Match: RBMS2 (RNA binding motif single stranded interacting protein 2 [Source:HGNC Symbol;Acc:HGNC:9909]) HSP 1 Score: 60.4622 bits (145), Expect = 2.311e-10 Identity = 34/104 (32.69%), Postives = 54/104 (51.92%), Query Frame = 1 Query: 445 GYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDL 756 GYGF+DF +P A + ++ + AK+ E+D TNLYI+NLP S D ++L+ + + YG++ S I+ + GVGF R E + I + Sbjct: 1 GYGFVDFDSPAAAQKAVSALKAN--GVQAQMAKQQEQDPTNLYISNLPMSM---DEQELEGMLKPYGQVISTRILRDANGTS-RGVGFARMESTEKCEAVIQNF 98
BLAST of RNA binding motif single stranded interacting vs. Ensembl Sea Lamprey
Match: pabpc4 (poly(A) binding protein, cytoplasmic 4 (inducible form) [Source:ZFIN;Acc:ZDB-GENE-030131-9663]) HSP 1 Score: 54.6842 bits (130), Expect = 3.624e-8 Identity = 54/211 (25.59%), Postives = 93/211 (44.08%), Query Frame = 1 Query: 310 KTSRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDKKCKGYGFIDFLTPEDAIIGLE-----YIQER--HPNFTIKFAKENEKDK---------TNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYADKHNTDSRRKHSILKSGINGKLQSSN 894 K+ N++IK L + ++ + + S K + D+ +GYGF+ F T E A +E + +R F +F E+++ TN+YI N D +KL+ F K+G+ S +M ++ K G GFV F E AQ A+N++ N + L+ + A+ + + +RK +LK + Q N Sbjct: 95 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILSCKV-VCDENGSRGYGFVHFETQEAADRAIEKMNGMLLNDRLARRRFVGRFKSRKEREQEMGARAKEFTNVYIKNF---GDDMDEDKLREFFGKFGKALSVCVMSDE-CGKSRGFGFVSFEQHEDAQRAVNEM--NGKELNGRTVFVGRAQKKGERQAELKRKFEMLKQERISRYQGVN 298
BLAST of RNA binding motif single stranded interacting vs. Ensembl Sea Lamprey
Match: ENSPMAT00000007448.1 (pep scaffold:Pmarinus_7.0:GL479027:131562:138944:-1 gene:ENSPMAG00000006727.1 transcript:ENSPMAT00000007448.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 50.0618 bits (118), Expect = 6.966e-8 Identity = 24/57 (42.11%), Postives = 38/57 (66.67%), Query Frame = 1 Query: 316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIED-DKKCKGYGFIDFLTPEDA 483 S+TNLYI+GL + +D+D+++L + S KA ++ +CKGYGF+DF +P A Sbjct: 53 SKTNLYIRGLPPHTSDQDLVKLCHPYGKIVSTKAILDKTTNQCKGYGFVDFDSPTAA 109
BLAST of RNA binding motif single stranded interacting vs. Ensembl Yeast
Match: PAB1 (Poly(A) binding protein; part of the 3'-end RNA-processing complex, mediates interactions between the 5' cap structure and the 3' mRNA poly(A) tail, involved in control of poly(A) tail length, interacts with translation factor eIF-4G; stimulates, but is not required for the deadenylation activity of the Pan2p-Pan3p poly(A)-ribonuclease complex [Source:SGD;Acc:S000000967]) HSP 1 Score: 68.9366 bits (167), Expect = 5.823e-13 Identity = 70/234 (29.91%), Postives = 104/234 (44.44%), Query Frame = 1 Query: 271 YISSKEI-SNFNQIKTSRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDKKCKGYGFIDFLTPEDAIIGLEYIQERHPN----FTIKFAKENEK-------------------DKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYADKHNTDSRRKHSILKSGINGKLQSSNQL 900 ++S KE S + K TNLY+K ++S TDE +L + S + D K KG+GF+++ EDA+ +E + + N + + K+NE+ NL++ NL S D EKL+ F YG I SA +M + K G GFV F E A AI E N QI+ + PL A + D RR S + ++Q+ NQ+ Sbjct: 201 HLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSV---DDEKLEEEFAPYGTITSAKVMRTENG-KSKGFGFVCFSTPEEATKAIT--EKNQQIV---AGKPLYVAIAQR--KDVRR------SQLAQQIQARNQM 417
BLAST of RNA binding motif single stranded interacting vs. Ensembl Nematostella
Match: EDO49588 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RGR7]) HSP 1 Score: 99.3673 bits (246), Expect = 3.213e-24 Identity = 65/175 (37.14%), Postives = 96/175 (54.86%), Query Frame = 1 Query: 310 KTSRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDKK-CKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQIL----SEDSTGPLEAKYAD 819 K S+TNLYI+GL +N TD+D+++L + S KA ++ D CKGYGF+DF +P A + + + + AK+ E+D TNLYI NLP++ D L+++F KYG++ S I+ +K N GVGF R E + I D N ++L S L K+AD Sbjct: 11 KLSKTNLYIRGLKANTTDDDLVRLCHKYGTIISTKAILDKDTNLCKGYGFVDFESPISAQKAVAALVNK--GIQAQMAKQQEQDPTNLYIQNLPQNC---DEAMLENMFSKYGKVISTRILRDKDTNSK-GVGFARMESAEKCEQVIKDF--NKKMLPGEVSLRCIQELVVKFAD 177
BLAST of RNA binding motif single stranded interacting vs. Ensembl Nematostella
Match: EDO33206 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SSV8]) HSP 1 Score: 62.7734 bits (151), Expect = 1.680e-10 Identity = 61/238 (25.63%), Postives = 96/238 (40.34%), Query Frame = 1 Query: 271 YISSKE-ISNFNQIKTSRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDKKCKGYGFIDFLTPEDAIIGLEYI------------------QERHPNFTIKFAKENEK-----DKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLT 912 ++S KE I TN+Y+K + DE + ++ + + S+K + + K KG+GF+ F TPE+A + + ER + K+ ++ NLYI NL D E+L+ F YG I SA +M + N G GFV F E A A+ ++ N +IL + PL A + + + I+G Q P T Sbjct: 176 WMSKKERIEKMGTQPKKFTNVYVKNFGDDMDDEQMKEICAEAGKIVSLKVMTDPEGKSKGFGFVSFETPEEAEEAVNVLNGKEIGGRRLWAGRAKKRAERAAEVKAEIEKKRQERINRFQGVNLYIKNLDDPI---DDERLREEFSPYGTISSAKVMKDDKGNS-KGFGFVCFSSPEEATKAVTEM--NGRIL---ISKPLYVALAQRREERKAQLAAQHMHRISGLRMHQGQRPFFT 404
BLAST of RNA binding motif single stranded interacting vs. Ensembl Nematostella
Match: EDO34879 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SN30]) HSP 1 Score: 59.3066 bits (142), Expect = 1.104e-9 Identity = 56/178 (31.46%), Postives = 93/178 (52.25%), Query Frame = 1 Query: 319 RTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDKKCK--GYGFIDFLTPEDAIIGLEYIQ-ERHPNFTIK--FAKEN--EKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYADKHNT 831 RTNL I + + + EDI ++ V S K I D + GY F+++ P+DA + + R N T+K FA+ + E NLYI+ LPK E+++++F+ +G+I ++ + L+ + + G GFVRF AQ AI+DL N++ L + L K+A+ N+ Sbjct: 9 RTNLIINYVPPSMSQEDIKKIFGTVGNVTSCKL-IRDRATGQSLGYAFVNYDNPDDANKAVREMNGARLQNKTLKVSFARPSSTEIKNANLYISGLPKDM---KEEEVEALFKPFGKIITSKV-LKDVSGEGRGTGFVRFDKRCEAQTAIDDL--NNKTLPGTNVK-LTVKFANPPNS 178
BLAST of RNA binding motif single stranded interacting vs. Ensembl Nematostella
Match: EDO42673 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S105]) HSP 1 Score: 55.8398 bits (133), Expect = 1.349e-8 Identity = 43/147 (29.25%), Postives = 70/147 (47.62%), Query Frame = 1 Query: 445 GYGFIDFLTPEDAIIGLEYIQERHPNFTI-------KFAK---ENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYADKHNTDSRRKHSI 855 G+GF+D+ T EDA ++ + FTI F++ +N K NLY+ N+PK + + FE YG I + ++ +K P G GFV + + AQ AI+ L ST L+ +YAD ++ R +++ Sbjct: 47 GFGFVDYNTTEDAQKAIDKLN----GFTIGNKVLKVAFSRPGGDNTKG-ANLYVCNIPKQLPEAE---FRKAFEAYGNIVNCRLLRDKSTGLPKGCGFVLYDKKAEAQAAISSLSGT---FFPGSTMGLQIRYADDNSAKVRPPNNV 182
BLAST of RNA binding motif single stranded interacting vs. Ensembl Nematostella
Match: EDO30576 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T0E1]) HSP 1 Score: 50.0618 bits (118), Expect = 1.386e-6 Identity = 34/126 (26.98%), Postives = 55/126 (43.65%), Query Frame = 1 Query: 550 EKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLTSPNGT 927 + + L++ +P++W KD L+ IFE YG+I I+ +KY + G F+ F ++ A L + P++ K AD RK L G+ K L ++ SP GT Sbjct: 16 DSNSVKLFVGQVPRTWEEKD---LRPIFEPYGQIYELTILKDKYTGQHKGCAFLTFCSRDACNAAQKHLHEKKTLPGMHH--PIQVKPADSETKSDDRK---LFVGMISKHAKEEDLRVMFSPFGT 133
BLAST of RNA binding motif single stranded interacting vs. Ensembl Medaka
Match: rbms1a (RNA-binding motif, single-stranded-interacting protein 1 [Source:NCBI gene;Acc:101157928]) HSP 1 Score: 102.064 bits (253), Expect = 2.442e-23 Identity = 74/224 (33.04%), Postives = 111/224 (49.55%), Query Frame = 1 Query: 316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTG---PLEAKYADKHNTDSRRKHSILKSGINGKLQSSN----QLPLLTSPNGTQMLTAIVDNGYF 963 S+TNLYI+GL TD D+++L ++S KA ++ KCKGYGF+DF +P A+ + ++ + AK+ E+D TNLYI+NLP S K+ EK+ + +G++ S I L Y+ GVGF R E I+ L+ S PL K+AD R+KH SGI Q+ + + L P+ +A + NGY+ Sbjct: 39 SKTNLYIRGLPPATTDLDLVKLCHQYGKIQSAKAILDKTTNKCKGYGFVDFDSPAAALKAVHALKTS--GIQAQMAKQQEQDPTNLYISNLPLSVDEKELEKM---LQPFGQVVSTRI-LRDYSGNSRGVGFARMDTTEQCNGVISHFNGKFLKLASGSLAPSQPLLCKFADSQ----RKKHG--HSGITPSAQTGDLRLGAMTLTYDPS-----SAAIQNGYY 245
BLAST of RNA binding motif single stranded interacting vs. Ensembl Medaka
Match: rbms1a (RNA-binding motif, single-stranded-interacting protein 1 [Source:NCBI gene;Acc:101157928]) HSP 1 Score: 101.679 bits (252), Expect = 2.562e-23 Identity = 74/224 (33.04%), Postives = 111/224 (49.55%), Query Frame = 1 Query: 316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTG---PLEAKYADKHNTDSRRKHSILKSGINGKLQSSN----QLPLLTSPNGTQMLTAIVDNGYF 963 S+TNLYI+GL TD D+++L ++S KA ++ KCKGYGF+DF +P A+ + ++ + AK+ E+D TNLYI+NLP S K+ EK+ + +G++ S I L Y+ GVGF R E I+ L+ S PL K+AD R+KH SGI Q+ + + L P+ +A + NGY+ Sbjct: 39 SKTNLYIRGLPPATTDLDLVKLCHQYGKIQSAKAILDKTTNKCKGYGFVDFDSPAAALKAVHALKTS--GIQAQMAKQQEQDPTNLYISNLPLSVDEKELEKM---LQPFGQVVSTRI-LRDYSGNSRGVGFARMDTTEQCNGVISHFNGKFLKLASGSLAPSQPLLCKFADSQ----RKKHG--HSGITPSAQTGDLRLGAMTLTYDPS-----SAAIQNGYY 245
BLAST of RNA binding motif single stranded interacting vs. Ensembl Medaka
Match: rbms2a (RNA-binding motif, single-stranded-interacting protein 2 [Source:NCBI gene;Acc:101164552]) HSP 1 Score: 97.0561 bits (240), Expect = 1.441e-21 Identity = 62/190 (32.63%), Postives = 98/190 (51.58%), Query Frame = 1 Query: 316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSED-----STGPLEAKYADKHNTDSRRKHSILKSG 867 S+TNLYI+GLH TD+D+++L + S KA ++ KCKGYGF+DF +P A + ++ + AK+ E+D TNLYI+NLP S D ++L+S+ + +G++ S I+ + GVGF R E + I N + + T PL K+AD + + L++G Sbjct: 23 SKTNLYIRGLHPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVTALKSS--GVQAQMAKQQEQDPTNLYISNLP---VSMDEQELESMLKPFGQVISTRILRDANGTS-RGVGFARMESTEKCEAIIQHF--NGKFIKTPPGVPAPTEPLLCKFADGGQKKRQSQGKYLQNG 204
BLAST of RNA binding motif single stranded interacting vs. Ensembl Medaka
Match: rbms2a (RNA-binding motif, single-stranded-interacting protein 2 [Source:NCBI gene;Acc:101164552]) HSP 1 Score: 97.0561 bits (240), Expect = 1.514e-21 Identity = 62/190 (32.63%), Postives = 98/190 (51.58%), Query Frame = 1 Query: 316 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSED-----STGPLEAKYADKHNTDSRRKHSILKSG 867 S+TNLYI+GLH TD+D+++L + S KA ++ KCKGYGF+DF +P A + ++ + AK+ E+D TNLYI+NLP S D ++L+S+ + +G++ S I+ + GVGF R E + I N + + T PL K+AD + + L++G Sbjct: 41 SKTNLYIRGLHPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVTALKSS--GVQAQMAKQQEQDPTNLYISNLP---VSMDEQELESMLKPFGQVISTRILRDANGTS-RGVGFARMESTEKCEAIIQHF--NGKFIKTPPGVPAPTEPLLCKFADGGQKKRQSQGKYLQNG 222
BLAST of RNA binding motif single stranded interacting vs. Ensembl Medaka
Match: rbms2b (RNA-binding motif, single-stranded-interacting protein 2 [Source:NCBI gene;Acc:101171488]) HSP 1 Score: 95.1301 bits (235), Expect = 6.641e-21 Identity = 62/196 (31.63%), Postives = 97/196 (49.49%), Query Frame = 1 Query: 292 SNFNQIKTSRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDK-KCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLE---AKYADKHNTDSRRKHSILKSG 867 +N+ + S+TNLYI+GLH TD+D+++L + S KA ++ KCKGYGF+DF +P A + ++ + AK+ E+D TNLYI+NLP S D ++L+++ + + + S I L + GVGF R E + I GP E K+AD + + L+SG Sbjct: 40 TNYGGEQLSKTNLYIRGLHPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPASAQKAVTALKAG--GVQAQMAKQQEQDPTNLYISNLP---LSMDEQELENMLKPFSQAISTRI-LRDASGTSRGVGFARMESTEKCEAIIQHFNGKFIKTPPGVQGPPEPLLCKFADGGQKKRQSQGKYLQSG 229
BLAST of RNA binding motif single stranded interacting vs. Planmine SMEST
Match: SMESG000005941.1 (SMESG000005941.1) HSP 1 Score: 691.804 bits (1784), Expect = 0.000e+0 Identity = 376/376 (100.00%), Postives = 376/376 (100.00%), Query Frame = 1 Query: 208 MIINSSSILKLQPKMNGNSNCYISSKEISNFNQIKTSRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDKKCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLTSPNGTQMLTAIVDNGYFKGPLFSGLSGTANTNDVYNQYLLNFAAQSGFMDXXXXXXXXXXXXXXXXXLGPYGDNPSSFGSYYSNLFYPIQNGIQGWKGNPISTTTMPVTXXXXXXXXXXXXXXXHQSLSGSQPTLNFNQLV 1335 MIINSSSILKLQPKMNGNSNCYISSKEISNFNQIKTSRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDKKCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLTSPNGTQMLTAIVDNGYFKGPLFSGLSGTANTNDVYNQYLLNFAAQSGFMDPYYLLPAVLAPPSPVSYLGPYGDNPSSFGSYYSNLFYPIQNGIQGWKGNPISTTTMPVTGPFVVSSPGSTSTVPHQSLSGSQPTLNFNQLV Sbjct: 1 MIINSSSILKLQPKMNGNSNCYISSKEISNFNQIKTSRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDKKCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLTSPNGTQMLTAIVDNGYFKGPLFSGLSGTANTNDVYNQYLLNFAAQSGFMDPYYLLPAVLAPPSPVSYLGPYGDNPSSFGSYYSNLFYPIQNGIQGWKGNPISTTTMPVTGPFVVSSPGSTSTVPHQSLSGSQPTLNFNQLV 376
BLAST of RNA binding motif single stranded interacting vs. Planmine SMEST
Match: SMESG000005941.1 (SMESG000005941.1) HSP 1 Score: 665.226 bits (1715), Expect = 0.000e+0 Identity = 362/362 (100.00%), Postives = 362/362 (100.00%), Query Frame = 1 Query: 250 MNGNSNCYISSKEISNFNQIKTSRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDKKCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLTSPNGTQMLTAIVDNGYFKGPLFSGLSGTANTNDVYNQYLLNFAAQSGFMDXXXXXXXXXXXXXXXXXLGPYGDNPSSFGSYYSNLFYPIQNGIQGWKGNPISTTTMPVTXXXXXXXXXXXXXXXHQSLSGSQPTLNFNQLV 1335 MNGNSNCYISSKEISNFNQIKTSRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDKKCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLTSPNGTQMLTAIVDNGYFKGPLFSGLSGTANTNDVYNQYLLNFAAQSGFMDPYYLLPAVLAPPSPVSYLGPYGDNPSSFGSYYSNLFYPIQNGIQGWKGNPISTTTMPVTGPFVVSSPGSTSTVPHQSLSGSQPTLNFNQLV Sbjct: 8 MNGNSNCYISSKEISNFNQIKTSRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDKKCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLTSPNGTQMLTAIVDNGYFKGPLFSGLSGTANTNDVYNQYLLNFAAQSGFMDPYYLLPAVLAPPSPVSYLGPYGDNPSSFGSYYSNLFYPIQNGIQGWKGNPISTTTMPVTGPFVVSSPGSTSTVPHQSLSGSQPTLNFNQLV 369
BLAST of RNA binding motif single stranded interacting vs. Planmine SMEST
Match: SMESG000005941.1 (SMESG000005941.1) HSP 1 Score: 664.84 bits (1714), Expect = 0.000e+0 Identity = 362/362 (100.00%), Postives = 362/362 (100.00%), Query Frame = 1 Query: 250 MNGNSNCYISSKEISNFNQIKTSRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDKKCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLTSPNGTQMLTAIVDNGYFKGPLFSGLSGTANTNDVYNQYLLNFAAQSGFMDXXXXXXXXXXXXXXXXXLGPYGDNPSSFGSYYSNLFYPIQNGIQGWKGNPISTTTMPVTXXXXXXXXXXXXXXXHQSLSGSQPTLNFNQLV 1335 MNGNSNCYISSKEISNFNQIKTSRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDKKCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLTSPNGTQMLTAIVDNGYFKGPLFSGLSGTANTNDVYNQYLLNFAAQSGFMDPYYLLPAVLAPPSPVSYLGPYGDNPSSFGSYYSNLFYPIQNGIQGWKGNPISTTTMPVTGPFVVSSPGSTSTVPHQSLSGSQPTLNFNQLV Sbjct: 1 MNGNSNCYISSKEISNFNQIKTSRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDKKCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYADKHNTDSRRKHSILKSGINGKLQSSNQLPLLTSPNGTQMLTAIVDNGYFKGPLFSGLSGTANTNDVYNQYLLNFAAQSGFMDPYYLLPAVLAPPSPVSYLGPYGDNPSSFGSYYSNLFYPIQNGIQGWKGNPISTTTMPVTGPFVVSSPGSTSTVPHQSLSGSQPTLNFNQLV 362
BLAST of RNA binding motif single stranded interacting vs. Planmine SMEST
Match: SMESG000028681.1 (SMESG000028681.1) HSP 1 Score: 225.328 bits (573), Expect = 1.765e-68 Identity = 109/180 (60.56%), Postives = 136/180 (75.56%), Query Frame = 1 Query: 310 KTSRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDKKCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYADKHNTDSRRKH 849 + S+TNLYIKGL NF DE + L PD++ +KS+KAA+E+D KCKGYGFIDFLT EDA L YIQ ++P F K+AKENEKDKTNLY+TN+PK WTSKDS+KLKS FEK+G IQSAFIM+EK NK +GVGFVRF +E A A+ L+ L D P+EAK+ADKHN ++R++ Sbjct: 51 RQSKTNLYIKGLPENFNDESLESLVPDKTKIKSLKAALEEDFKCKGYGFIDFLTEEDAKDALTYIQTKNPGFNAKYAKENEKDKTNLYVTNIPKEWTSKDSDKLKSYFEKFGPIQSAFIMMEKSTNKTVGVGFVRFVYELHAYEALEKLQRGEDYLL-DCDKPIEAKFADKHNPETRKRR 229
BLAST of RNA binding motif single stranded interacting vs. Planmine SMEST
Match: SMESG000028681.1 (SMESG000028681.1) HSP 1 Score: 224.557 bits (571), Expect = 6.831e-68 Identity = 109/180 (60.56%), Postives = 136/180 (75.56%), Query Frame = 1 Query: 310 KTSRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDKKCKGYGFIDFLTPEDAIIGLEYIQERHPNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYADKHNTDSRRKH 849 + S+TNLYIKGL NF DE + L PD++ +KS+KAA+E+D KCKGYGFIDFLT EDA L YIQ ++P F K+AKENEKDKTNLY+TN+PK WTSKDS+KLKS FEK+G IQSAFIM+EK NK +GVGFVRF +E A A+ L+ L D P+EAK+ADKHN ++R++ Sbjct: 74 RQSKTNLYIKGLPENFNDESLESLVPDKTKIKSLKAALEEDFKCKGYGFIDFLTEEDAKDALTYIQTKNPGFNAKYAKENEKDKTNLYVTNIPKEWTSKDSDKLKSYFEKFGPIQSAFIMMEKSTNKTVGVGFVRFVYELHAYEALEKLQRGEDYLL-DCDKPIEAKFADKHNPETRKRR 252 The following BLAST results are available for this feature:
BLAST of RNA binding motif single stranded interacting vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of RNA binding motif single stranded interacting vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 5
BLAST of RNA binding motif single stranded interacting vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 5
BLAST of RNA binding motif single stranded interacting vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of RNA binding motif single stranded interacting vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of RNA binding motif single stranded interacting vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of RNA binding motif single stranded interacting vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of RNA binding motif single stranded interacting vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of RNA binding motif single stranded interacting vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of RNA binding motif single stranded interacting vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 5
BLAST of RNA binding motif single stranded interacting vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 1
BLAST of RNA binding motif single stranded interacting vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 5
BLAST of RNA binding motif single stranded interacting vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of RNA binding motif single stranded interacting vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30031493 ID=SMED30031493|Name=RNA binding motif single stranded interacting|organism=Schmidtea mediterranea sexual|type=transcript|length=1508bpback to top protein sequence of SMED30031493-orf-1 >SMED30031493-orf-1 ID=SMED30031493-orf-1|Name=SMED30031493-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=377bp MIINSSSILKLQPKMNGNSNCYISSKEISNFNQIKTSRTNLYIKGLHSNFback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
|