SMED30031472

Overview
NameSMED30031472
Smed IDSMED30031472
Length (bp)1352
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30031472 (SMED30031472) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30031472 (SMED30031472) in cells (dots) of each of the 12 neoblast clusters.

 

back to top

 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30031472 (SMED30031472) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30031472 (SMED30031472) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top

 

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020



SMED30031472

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 6

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
head regionSMED30031472SMESG000016767.1 dd_Smed_v4_10774_0_1dd_Smed_v4PMID:27063937
Scimone et al., 2016		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30031472SMESG000016767.1 dd_Smed_v4_10774_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30031472SMESG000016767.1 dd_Smed_v4_10774_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30031472SMESG000016767.1 SMESG000016766.1 Contig43941newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30031472SMESG000016767.1 SMESG000016766.1 Contig43941uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
head regionSMED30031472SMESG000016767.1 dd_Smed_v6_10774_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30031472 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.005629:12093..18420 -6692
Homology
[Close]
BLAST of SMED30031472 vs. TrEMBL
Match: A0A564YUZ6 (Uncharacterized protein OS=Hymenolepis diminuta OX=6216 GN=WMSIL1_LOCUS9905 PE=4 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.071e-8
Identity = 75/310 (24.19%), Postives = 130/310 (41.94%), Query Frame = 3 
Query:  174 VTMLLVISCIVSLMMVIPITIQYIGS---ILDYRLRLQYQIEDTEESD-----------NPIEKYEYYLYHYRIMFNLSIFLTIIGSSLPTSIYMTQRNPDEMSTAVSAYEEFINIWGVCHLMTYLDICGRIFFSLIITVPSLIIFIYVFFKNYEP------KVIFRSIYISSWVSLLFALISPITFVTNEYEKFTIENRSLTYCKQGVELTVYNRCRLFELLCVHLIPLAIQIPCIVMIKKS----LTFANNSLLYEPIIFIVTNIPIAIIDT---IEQMDEKWIH--SSEFSNFYILFLTIYHLGYTC 1016
             T+LL    +V ++++IP  +Q   +   I   R +L  Q   + +S              +      L+ YRI+  ++  + +I S+LP  +      P E +           +WG CH+  Y+D   R F + +I +P ++ F    F    P      K IFR I IS+    LF+ +  I  V   YEK  I N S+ YC  G  +T       F+     + P  I    I+++  +    L   +  + YEP+IF+    P+  ++    I     K  H  + +F+N  ++F   YH+ ++ 
Sbjct:   52 ATLLLSGFLVVGILLIIPAIMQTSAAYLWIGQVRKQLGRQPRSSVDSGRYSTVPSIFRKKNVTDMTRTLFVYRILACVASLMVLICSTLPQLVLTVANRPKEGN--------IDQLWGWCHIFVYMDHTTRSFATYLIVIPYVLFFWDFLFSEVVPRRHLVMKRIFRGILISALPIALFSSMVAIPLVIYRYEK--IGNDSIIYC--GATITGTTNFIAFDFAVTRVAPTVI----IIVVTSAFLIWLPRHHYGVFYEPLIFLCLMAPVVFLEGTVYIACYMGKVTHLINEQFANAVLIFYAFYHMSFSS 345
[Close]
BLAST of SMED30031472 vs. TrEMBL
Match: A0A0R3SBQ4 (Uncharacterized protein OS=Hymenolepis diminuta OX=6216 GN=HDID_LOCUS1932 PE=4 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 1.769e-7
Identity = 63/242 (26.03%), Postives = 106/242 (43.80%), Query Frame = 3 
Query:  336 LYHYRIMFNLSIFLTIIGSSLPTSIYMTQRNPDEMSTAVSAYEEFINIWGVCHLMTYLDICGRIFFSLIITVPSLIIFIYVFFKNYEP------KVIFRSIYISSWVSLLFALISPITFVTNEYEKFTIENRSLTYCKQGVELTVYNRCRLFELLCVHLIPLAIQIPCIVMIKKS----LTFANNSLLYEPIIFIVTNIPIAIIDT---IEQMDEKWIH--SSEFSNFYILFLTIYHLGYTC 1016
            L+ YRI+  ++  + +I S+LP  +      P E +           +WG CH+  Y+D   R F + +I +P ++ F    F    P      K IFR I IS+    LF+ +  I  V   YEK  I N S+ YC  G  +T       F+     + P  I    I+++  +    L   +  + YEP+IF+    P+  ++    I     K  H  + +F+N  ++F   YH+ ++ 
Sbjct:   49 LFVYRILACVASLMVLICSTLPQLVLTVANRPKEGN--------IDQLWGWCHIFVYMDHTTRSFATYLIVIPYVLFFWDFLFSEVVPRRHLVMKRIFRGILISALPIALFSSMVAIPLVIYRYEK--IGNDSIIYC--GATITGTTNFIAFDFAVTRVAPTVI----IIVVTSAFLIWLPRHHYGVFYEPLIFLCLMAPVVFLEGTVYIACYMGKVTHLINEQFANAVLIFYAFYHMSFSS 274
[Close]
BLAST of SMED30031472 vs. TrEMBL
Match: A0A4E0RFS5 (Uncharacterized protein OS=Fasciola hepatica OX=6192 GN=D915_002536 PE=4 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 4.116e-7
Identity = 76/323 (23.53%), Postives = 141/323 (43.65%), Query Frame = 3 
Query:  171 FVTMLLVISCIVSLMMVIPITIQYIGSIL-------DYRLRLQYQIEDT---EES-----------DNPIEKYEYYLYHYRIMFNLSIFLTIIGSSLPTSIYMTQR--NPDEMSTAVSAYEEFINIWGVCHLMTYLDICGRIFFSLIITVPSLIIFIYVFFKNYEPKV------IFRSIYISSWVSLLFALISPITFVTNEYEKFTIENRSLTYCK---QGVELTVYNRCRLFELLCVHLIPLAIQIPCIVMIKKS----LTFANNSLLYEPIIFIVTNIPIAIIDTIEQ------MDEKWIHSSEFSNFYILFLTIYHLGYT 1013
            F T LL    +V ++++IP  +Q   + +       +   R++ Q  D    +ES            + + K +  L+ YR++   +  L +I S+LP  I    R  +P+ +            +WG CH++TY D   R F + +I VP  ++F    F    P+       +F  I  +S    LF+ I P+  V   + ++  E   +T C     G+   +Y     ++ L   +IP+A    CI++        L   +  + YEP IF + ++PI + +T+        + +K I  + FSNF ++   +YH+ ++
Sbjct:   42 FATCLLSGFFVVGILLIIPALMQTAAAYVWAAQVRKEASSRMKAQESDQRGLQESTHSAKHVYINDGHRLSKQDRTLFLYRLLACCASLLVLIFSTLPQLIIGVARPLSPNTID----------KLWGWCHVLTYTDASTRCFATYLIVVPFGLLFWNFIFGEILPRPQLLTDNVFAVILRASVPIALFSFIIPVPMVAKRFVQYYDEG--MTKCNGSPDGLVFMIY-----YDYLVTRVIPVA----CILVFSIGFVLWLPRKDYGVFYEPGIFTIFSVPIILCETVIHVYHRIGLVDKLIEPN-FSNFMLIAYALYHMSFS 342
[Close]
BLAST of SMED30031472 vs. TrEMBL
Match: A0A068WDM5 (Uncharacterized protein OS=Echinococcus granulosus OX=6210 GN=EgrG_000812600 PE=4 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 4.346e-7
Identity = 76/362 (20.99%), Postives = 150/362 (41.44%), Query Frame = 3 
Query:  174 VTMLLVISCIVSLMMVIPITIQYIGS---ILDYRLRLQYQ----IEDTEESDNP-------IEKYEYYLYHYRIMFNLSIFLTIIGSSLPTSIYMTQRNPDEMSTAVSAYEEFINIWGVCHLMTYLDICGRIFFSLIITVPSLIIFIYVFFKNYEPKV------IFRSIYISSWVSLLFALISPITFVTNEYEKFTIENRSLTYCKQGVELTVYNRCRLFELLCVHLIPLAIQIPCIVMIKKSLTFANNSLLYEPIIFIVTNIPIAIIDTIEQMD-----EKWIHSSEFSNFYILFLTIYHLGYTCMILVWPFQMI--WMNKDENLQIKPEINDVYKILTNRKTIRKTV----RRQFTAIKR 1166
             T++L    +V ++++IP  +Q   +   I   R +L +Q      +   S  P       +      L+ YRI+  ++  L ++ S+LP  +      P E             +WG CH   Y+D   R F + +I VP ++ F    F    P+       IFR I IS+    LF+ +  +  V   YE+  + N +   C   +  T      +F+     ++P+AI +         L   +  + YEP+IF+    P+A ++    +       +++ +  F+N  ++F   YH+ ++   ++   + +   + ++   + +  I +  K+   R   R  V    +RQF+ + R
Sbjct:   65 ATLILSGFLVVGILLIIPAILQTAAAYLWIGQCRKQLGHQPLINSRNNGYSTVPTGFPQKNVTDMTRTLFIYRILACVASLLVLLCSTLPQLVLAVANPPKE--------GNIDQLWGWCHAFVYMDHATRSFATYLIVVPYVLFFWDFLFSEVVPRRRLVMQHIFRGILISALPIALFSSLIAVPLVLFRYER--LWNGTHDVCLSSISGTKI--FLVFDFAVTRVVPMAIIVGVTSAFLIWLPRHHYGVFYEPLIFLFLMAPLAFVEATIYIACYMGVVRYLVNENFANALLIFYAFYHMSFSSTFVLATLRSVVTEIRRERRARKQFSIGEEPKVDECRSARRSNVMLGLQRQFSVVFR 414
[Close]
BLAST of SMED30031472 vs. TrEMBL
Match: A0A504YWG9 (Uncharacterized protein OS=Fasciola gigantica OX=46835 GN=FGIG_02586 PE=4 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 4.826e-7
Identity = 75/323 (23.22%), Postives = 141/323 (43.65%), Query Frame = 3 
Query:  171 FVTMLLVISCIVSLMMVIPITIQYIGS-ILDYRLRLQYQIE-DTEESD-------------------NPIEKYEYYLYHYRIMFNLSIFLTIIGSSLPTSIYMTQR--NPDEMSTAVSAYEEFINIWGVCHLMTYLDICGRIFFSLIITVPSLIIFIYVFFKNYEPKV------IFRSIYISSWVSLLFALISPITFVTNEYEKFTIENRSLTYCK---QGVELTVYNRCRLFELLCVHLIPLAIQIPCIVMIKKS----LTFANNSLLYEPIIFIVTNIPIAIIDTIEQ------MDEKWIHSSEFSNFYILFLTIYHLGYT 1013
            F T LL    +V ++++IP  +Q   + +   ++R +     + +ESD                   + + K +  L+ YR++   +  L +I S+LP  I    R  +P+ +            +WG CH++TY D   R F + +I VP  ++F    F    P+       +F  I  +S    LF+ I P+  V   + ++  E   +T C     G+   +Y     ++ L   +IP+A    CI++        L   +  + YEP IF + ++PI + +T+        + +K I  + FSNF ++   +YH+ ++
Sbjct:   42 FATCLLSGFFVVGILLIIPALMQTAAAYVWAAQVRKEASTRMNAQESDQRGLQKSTHSAKHVYINDGHRLSKQDRTLFLYRLLACCASLLVLIFSTLPQLIIGVARPLSPNTID----------KLWGWCHVLTYTDASTRCFATYLIVVPFGLLFWNFIFGEILPRPQLLTDNVFAVILRASVPIALFSFIIPVPMVAKRFVQYYDEG--MTKCNGSPDGLVFMIY-----YDYLVTRVIPVA----CIMVFSIGFVLWLPRKDYGVFYEPGIFTIFSVPIILCETVIHVYHRIGLVDKLIEPN-FSNFMLIAYALYHMSFS 342
[Close]
BLAST of SMED30031472 vs. Planmine SMEST
Match: SMESG000016767.1 (SMESG000016767.1)

HSP 1 Score: 669.848 bits (1727), Expect = 0.000e+0
Identity = 330/330 (100.00%), Postives = 330/330 (100.00%), Query Frame = 3 
Query:  180 MLLVISCIVSLMMVIPITIQYIGSILDYRLRLQYQIEDTEESDNPIEKYEYYLYHYRIMFNLSIFLTIIGSSLPTSIYMTQRNPDEMSTAVSAYEEFINIWGVCHLMTYLDICGRIFFSLIITVPSLIIFIYVFFKNYEPKVIFRSIYISSWVSLLFALISPITFVTNEYEKFTIENRSLTYCKQGVELTVYNRCRLFELLCVHLIPLAIQIPCIVMIKKSLTFANNSLLYEPIIFIVTNIPIAIIDTIEQMDEKWIHSSEFSNFYILFLTIYHLGYTCMILVWPFQMIWMNKDENLQIKPEINDVYKILTNRKTIRKTVRRQFTAIKRK 1169
            MLLVISCIVSLMMVIPITIQYIGSILDYRLRLQYQIEDTEESDNPIEKYEYYLYHYRIMFNLSIFLTIIGSSLPTSIYMTQRNPDEMSTAVSAYEEFINIWGVCHLMTYLDICGRIFFSLIITVPSLIIFIYVFFKNYEPKVIFRSIYISSWVSLLFALISPITFVTNEYEKFTIENRSLTYCKQGVELTVYNRCRLFELLCVHLIPLAIQIPCIVMIKKSLTFANNSLLYEPIIFIVTNIPIAIIDTIEQMDEKWIHSSEFSNFYILFLTIYHLGYTCMILVWPFQMIWMNKDENLQIKPEINDVYKILTNRKTIRKTVRRQFTAIKRK
Sbjct:    1 MLLVISCIVSLMMVIPITIQYIGSILDYRLRLQYQIEDTEESDNPIEKYEYYLYHYRIMFNLSIFLTIIGSSLPTSIYMTQRNPDEMSTAVSAYEEFINIWGVCHLMTYLDICGRIFFSLIITVPSLIIFIYVFFKNYEPKVIFRSIYISSWVSLLFALISPITFVTNEYEKFTIENRSLTYCKQGVELTVYNRCRLFELLCVHLIPLAIQIPCIVMIKKSLTFANNSLLYEPIIFIVTNIPIAIIDTIEQMDEKWIHSSEFSNFYILFLTIYHLGYTCMILVWPFQMIWMNKDENLQIKPEINDVYKILTNRKTIRKTVRRQFTAIKRK 330
[Close]
BLAST of SMED30031472 vs. Planmine SMEST
Match: SMESG000016767.1 (SMESG000016767.1)

HSP 1 Score: 650.588 bits (1677), Expect = 0.000e+0
Identity = 319/319 (100.00%), Postives = 319/319 (100.00%), Query Frame = 3 
Query:  213 MMVIPITIQYIGSILDYRLRLQYQIEDTEESDNPIEKYEYYLYHYRIMFNLSIFLTIIGSSLPTSIYMTQRNPDEMSTAVSAYEEFINIWGVCHLMTYLDICGRIFFSLIITVPSLIIFIYVFFKNYEPKVIFRSIYISSWVSLLFALISPITFVTNEYEKFTIENRSLTYCKQGVELTVYNRCRLFELLCVHLIPLAIQIPCIVMIKKSLTFANNSLLYEPIIFIVTNIPIAIIDTIEQMDEKWIHSSEFSNFYILFLTIYHLGYTCMILVWPFQMIWMNKDENLQIKPEINDVYKILTNRKTIRKTVRRQFTAIKRK 1169
            MMVIPITIQYIGSILDYRLRLQYQIEDTEESDNPIEKYEYYLYHYRIMFNLSIFLTIIGSSLPTSIYMTQRNPDEMSTAVSAYEEFINIWGVCHLMTYLDICGRIFFSLIITVPSLIIFIYVFFKNYEPKVIFRSIYISSWVSLLFALISPITFVTNEYEKFTIENRSLTYCKQGVELTVYNRCRLFELLCVHLIPLAIQIPCIVMIKKSLTFANNSLLYEPIIFIVTNIPIAIIDTIEQMDEKWIHSSEFSNFYILFLTIYHLGYTCMILVWPFQMIWMNKDENLQIKPEINDVYKILTNRKTIRKTVRRQFTAIKRK
Sbjct:    1 MMVIPITIQYIGSILDYRLRLQYQIEDTEESDNPIEKYEYYLYHYRIMFNLSIFLTIIGSSLPTSIYMTQRNPDEMSTAVSAYEEFINIWGVCHLMTYLDICGRIFFSLIITVPSLIIFIYVFFKNYEPKVIFRSIYISSWVSLLFALISPITFVTNEYEKFTIENRSLTYCKQGVELTVYNRCRLFELLCVHLIPLAIQIPCIVMIKKSLTFANNSLLYEPIIFIVTNIPIAIIDTIEQMDEKWIHSSEFSNFYILFLTIYHLGYTCMILVWPFQMIWMNKDENLQIKPEINDVYKILTNRKTIRKTVRRQFTAIKRK 319
The following BLAST results are available for this feature:
BLAST of SMED30031472 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30031472 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30031472 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30031472 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30031472 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30031472 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30031472 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30031472 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A564YUZ63.071e-824.19Uncharacterized protein OS=Hymenolepis diminuta OX... [more]
A0A0R3SBQ41.769e-726.03Uncharacterized protein OS=Hymenolepis diminuta OX... [more]
A0A4E0RFS54.116e-723.53Uncharacterized protein OS=Fasciola hepatica OX=61... [more]
A0A068WDM54.346e-720.99Uncharacterized protein OS=Echinococcus granulosus... [more]
A0A504YWG94.826e-723.22Uncharacterized protein OS=Fasciola gigantica OX=4... [more]
back to top
BLAST of SMED30031472 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30031472 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30031472 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30031472 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30031472 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30031472 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000016767.10.000e+0100.00SMESG000016767.1[more]
SMESG000016767.10.000e+0100.00SMESG000016767.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30031472 ID=SMED30031472|Name=SMED30031472|organism=Schmidtea mediterranea sexual|type=transcript|length=1352bp
TGCAAATTTTGCCCAATTCTATCTATTTATTTAAACAAAATAATTCCAAA
TTCAGAAAGTGATCGGTATTTAGCAGTGAATATTTTGCAATTCGATCAAA
GATGAATTTCAGCACCGAACAATCCGATTTGCACCTTCTCACGGACAAGA
GCAACGTTTACCTCATCGTTTTCGTCACCATGTTGTTAGTAATATCTTGC
ATAGTGTCATTAATGATGGTCATCCCGATCACGATTCAGTACATCGGATC
CATTCTCGATTATAGACTCAGACTTCAATATCAGATCGAGGATACGGAAG
AATCAGACAATCCAATTGAGAAATATGAGTACTATTTGTATCATTATCGG
ATCATGTTCAACCTCAGCATATTTCTGACAATTATTGGTTCATCTTTGCC
AACCTCAATCTACATGACCCAAAGAAACCCAGATGAAATGTCAACTGCTG
TCAGTGCCTATGAGGAATTTATCAACATATGGGGGGTTTGCCACTTGATG
ACATATCTAGACATTTGCGGTAGAATTTTCTTTTCCCTTATCATAACGGT
CCCCTCGTTGATAATTTTCATTTATGTCTTTTTCAAAAACTACGAGCCGA
AAGTGATTTTTAGAAGCATTTACATTTCATCCTGGGTCTCATTGCTTTTT
GCGTTGATTTCCCCTATAACATTTGTGACAAATGAATACGAAAAGTTCAC
AATTGAAAATCGCTCCTTAACTTATTGCAAGCAAGGTGTAGAACTGACCG
TTTATAATCGTTGCCGTCTTTTTGAACTCCTATGTGTTCACTTGATTCCC
TTGGCAATACAGATTCCTTGCATAGTCATGATCAAAAAAAGTTTAACGTT
TGCCAACAACTCCCTTTTGTATGAGCCCATCATTTTCATTGTCACAAATA
TCCCAATTGCAATCATTGACACCATTGAACAAATGGATGAAAAATGGATT
CATTCTTCGGAATTCAGCAATTTTTACATTCTTTTTCTGACAATTTACCA
TTTGGGTTACACCTGCATGATTCTCGTTTGGCCCTTTCAAATGATTTGGA
TGAATAAAGACGAAAACTTGCAAATCAAACCGGAAATTAATGACGTATAC
AAAATTCTGACGAATCGTAAAACAATTCGTAAAACGGTCCGGAGACAATT
TACTGCAATAAAAAGAAAATGATACGTTGTTTTGAATTTTATTAATGACA
GAAAGGCAAGATATATATGTAAATAATATTCTTCAAGTAATACCCACCCT
CAATGTATTATACGACTCTCAGGAGAAAGAAAATCCATTCGAAATTACAC
ATATATCATACAATAGTTTCACCCATGAAAGGCCACTGAAAATGAAACCA
CG
back to top

protein sequence of SMED30031472-orf-1

>SMED30031472-orf-1 ID=SMED30031472-orf-1|Name=SMED30031472-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=357bp
MNFSTEQSDLHLLTDKSNVYLIVFVTMLLVISCIVSLMMVIPITIQYIGS
ILDYRLRLQYQIEDTEESDNPIEKYEYYLYHYRIMFNLSIFLTIIGSSLP
TSIYMTQRNPDEMSTAVSAYEEFINIWGVCHLMTYLDICGRIFFSLIITV
PSLIIFIYVFFKNYEPKVIFRSIYISSWVSLLFALISPITFVTNEYEKFT
IENRSLTYCKQGVELTVYNRCRLFELLCVHLIPLAIQIPCIVMIKKSLTF
ANNSLLYEPIIFIVTNIPIAIIDTIEQMDEKWIHSSEFSNFYILFLTIYH
LGYTCMILVWPFQMIWMNKDENLQIKPEINDVYKILTNRKTIRKTVRRQF
TAIKRK*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000101muscle cell
PLANA:0000418head
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableTMHMMTMhelixcoord: 222..244
NoneNo IPR availableTMHMMTMhelixcoord: 168..190
NoneNo IPR availableTMHMMTMhelixcoord: 253..275
NoneNo IPR availableTMHMMTMhelixcoord: 84..106
NoneNo IPR availableTMHMMTMhelixcoord: 20..42
NoneNo IPR availableTMHMMTMhelixcoord: 142..161
NoneNo IPR availableTMHMMTMhelixcoord: 290..312