SMED30031435

Overview
NameSMED30031435
Smed IDSMED30031435
Length (bp)2890
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30031435 (SMED30031435) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30031435 (SMED30031435) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30031435 (SMED30031435) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30031435 (SMED30031435) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30031435

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 11

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
intestinal phagocyteSMED30031435SMESG000020814.1 Contig2669newmark_estsPMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30031435SMESG000020814.1 Contig2669uc_Smed_v2PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30031435SMESG000012224.1 Contig2669newmark_estsPMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30031435SMESG000012224.1 Contig2669uc_Smed_v2PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
nervous systemSMED30031435SMESG000020814.1 dd_Smed_v4_5728_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30031435SMESG000020814.1 dd_Smed_v4_5728_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neuronSMED30031435SMESG000020814.1 dd_Smed_v4_5728_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		whole organism asexual adult colorimetric in situ hybridization evidence
parenchymal cellSMED30031435SMESG000020814.1 dd_Smed_v4_5728_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
anterior sideSMED30031435SMESG000020814.1 dd_Smed_v4_5728_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30031435SMESG000020814.1 dd_Smed_v4_5728_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30031435SMESG000020814.1 dd_Smed_v4_5728_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
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BLAST of SMED30031435 vs. TrEMBL
Match: A0A1B6CFS2 (Uncharacterized protein (Fragment) OS=Clastoptera arizonana OX=38151 GN=g.34276 PE=4 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 1.984e-6
Identity = 46/176 (26.14%), Postives = 86/176 (48.86%), Query Frame = 1 
Query:  412 DSRLRTSKLQCEQLKKKVATISLECNKLESQCRELKEVKEHLLSFQSD-VSMLKRKEKVTTEIQQRLNLLDEENSIMRDQIEKLRIKVSDLDSEIDPDLINKRLDQLEIDSHQLTSITLQNRRDHDNFSLDVGNQLVETFITQQTIYEEFRRLQHRLVSVERQNQIMADLIHYHCH 936
            +SRLR S  + E+ + ++A +  E  ++E   R + + K      + D  S+    E    ++Q  L  L++EN  ++ Q+  L    +    E+   L++ RL  LE+D+  L+      RR ++    DV NQ+V   ++Q+++ EE   L  R+  +E QN+ +  L+    H
Sbjct:  188 ESRLRNSASEAERCRARLAALQREFTRMEDSVRSMLQYKSRYEQLKQDKTSLTLAYENRAQQLQLTLTKLNQENEALKKQLRALEAAGA---GEVQAALVD-RLRVLELDNCTLSREGDAQRRQYERCLDDVANQVVRALLSQKSLREEISTLHQRVKDLETQNRALTSLLLQQIH 359
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BLAST of SMED30031435 vs. Planmine SMEST
Match: SMESG000020814.1 (SMESG000020814.1)

HSP 1 Score: 1541.17 bits (3989), Expect = 0.000e+0
Identity = 853/856 (99.65%), Postives = 855/856 (99.88%), Query Frame = 1 
Query:  118 MGLFGKSDDSTPTESLWNRLTKHHRKQEKSNCNNSPPNQVTIRSQNKHHIKSPLAKITEESKKENFXXXXXXXXXXXXXXXXXXXXXYRVSCSGSDQLDSRLRTSKLQCEQLKKKVATISLECNKLESQCRELKEVKEHLLSFQSDVSMLKRKEKVTTEIQQRLNLLDEENSIMRDQIEKLRIKVSDLDSEIDPDLINKRLDQLEIDSHQLTSITLQNRRDHDNFSLDVGNQLVETFITQQTIYEEFRRLQHRLVSVERQNQIMADLIHYHCHNSPRTPINRPMTNSDSSRGPLSMQXXXXXXXXXXXXXXXDREAEKINTSPSNLDWQLTDQSDSIFLCDTLNKSSEPSGEVLNFDKGKNYYKIDFTTYSESLNTLPLTDLSIGSILSTEEQSETIYVTPHLRNNSCETETSNLDKSGILQQDSINKCSCFKYQSISSSPHMHSQKDDGYYSTSHDGTMNITGTMLTISDSTHKPIAEFSDKKKRYFILTKHLQKSHGRSKRIFQVLQSSMTITVRYSVDLETQLYNRNLREKQHKQRESHLVEDEEAQVFSDTELYGTRFCIXXXXXXXXXXXXFASNKTVPIKRIINHGYSNKSIKNESRHISSLPPLIEHVSERERKIEIKSSKQSRIVPPRVRPKXXXXXXXXXQRLCEARKSKDKQIIQKSETHVKTVTQSPLSTRSNSKEIINRXXXXXXXXXXXXXLKTNESTKSSPGMKIHKQSIPRNEXXXXXXXXXXXXXXTDSFLNCIYEKDLASLDYVNDSQIRVSPDGCQDTKPNYSNLPPQFFTNIETNRKVRSDFSSPLDEYFMEEDVDEKISRQLNEFEDYFDQEFISELENYQLPKSSVNMLVLQHFK 2685
            MGLFGKSDDSTPTESLWNRLTKHHRKQEKSNCNNSPPNQVTIRSQNKHHIKSPLAKITEESKKENFRLSLQSLRSRSTSSPSQSHQQYRVSCSGSDQLDSRLRTSKLQCEQLKKKVATISLECNKLESQCRELKEVKEHLLSFQSDVSMLKRKEKVTTEIQQRLNLLDEENSIMRDQIEKLRIKVSDLDSEIDPDLINKRLDQLEIDSHQLTSITLQNRRDHDNFSLDVGNQLVETFITQQTIYEEFRRLQHRLVSVERQNQIMADLIHYHCHNSPRTPINRPMTNSDSSRGPLSMQASLEAASLSLSPPSSDREAEKINTSPSNLDWQLTDQSDSIFLCDTLNKSSEPSGEVLNFDKGK+YYKIDFTTYSESLNTLPLTDLSIGSILSTEEQSETIYVTPHLRNNSCETETSNLDKSGILQQDSINKCSCFKYQSISSSPHMHSQKDDGYYSTSHDGTMNITGTMLTISDSTHKPIAEFSDKKKRYFILTKHLQKSHGRSKRIFQVLQSSMTITVRYSVDLETQLYNRNLREKQHKQRESHLVEDEEAQVFSDTELYGTRFCIDSDLEDDELPSLFASNKTVPIKRIINHGYSNKSIKNESRHISSLPPLIEHVSERERKIEIKSSKQSRIVPPRVRPKSSGIPSSSSQRLCEARKSKDKQIIQKSETHVKTVTQSPLSTRSNSKEIINRKPPKSVSSPKSCKLKTNESTKSSPGMKIHKQSIPRNEPAKPPPVPPRPKKKTDSFLNCIYEKDLASLDYVNDSQIRVSPDGCQDTKPNY NLPPQF+TNIETNRKVRSDFSSPLDEYFMEEDVDEKISRQLNEFEDYFDQEFISELENYQLPKSSVNMLVLQHFK
Sbjct:    1 MGLFGKSDDSTPTESLWNRLTKHHRKQEKSNCNNSPPNQVTIRSQNKHHIKSPLAKITEESKKENFRLSLQSLRSRSTSSPSQSHQQYRVSCSGSDQLDSRLRTSKLQCEQLKKKVATISLECNKLESQCRELKEVKEHLLSFQSDVSMLKRKEKVTTEIQQRLNLLDEENSIMRDQIEKLRIKVSDLDSEIDPDLINKRLDQLEIDSHQLTSITLQNRRDHDNFSLDVGNQLVETFITQQTIYEEFRRLQHRLVSVERQNQIMADLIHYHCHNSPRTPINRPMTNSDSSRGPLSMQASLEAASLSLSPPSSDREAEKINTSPSNLDWQLTDQSDSIFLCDTLNKSSEPSGEVLNFDKGKDYYKIDFTTYSESLNTLPLTDLSIGSILSTEEQSETIYVTPHLRNNSCETETSNLDKSGILQQDSINKCSCFKYQSISSSPHMHSQKDDGYYSTSHDGTMNITGTMLTISDSTHKPIAEFSDKKKRYFILTKHLQKSHGRSKRIFQVLQSSMTITVRYSVDLETQLYNRNLREKQHKQRESHLVEDEEAQVFSDTELYGTRFCIDSDLEDDELPSLFASNKTVPIKRIINHGYSNKSIKNESRHISSLPPLIEHVSERERKIEIKSSKQSRIVPPRVRPKSSGIPSSSSQRLCEARKSKDKQIIQKSETHVKTVTQSPLSTRSNSKEIINRKPPKSVSSPKSCKLKTNESTKSSPGMKIHKQSIPRNEPAKPPPVPPRPKKKTDSFLNCIYEKDLASLDYVNDSQIRVSPDGCQDTKPNYRNLPPQFYTNIETNRKVRSDFSSPLDEYFMEEDVDEKISRQLNEFEDYFDQEFISELENYQLPKSSVNMLVLQHFK 856
The following BLAST results are available for this feature:
BLAST of SMED30031435 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031435 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031435 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031435 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031435 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031435 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031435 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031435 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1B6CFS21.984e-626.14Uncharacterized protein (Fragment) OS=Clastoptera ... [more]
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BLAST of SMED30031435 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031435 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031435 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031435 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031435 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031435 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000020814.10.000e+099.65SMESG000020814.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30031435 ID=SMED30031435|Name=SMED30031435|organism=Schmidtea mediterranea sexual|type=transcript|length=2890bp
GTACTGTCACCAGGTAATGCAGTCAAGATTGAAATAATTGCCAAACAGAT
ATGATCGCATGAATCTGTCGTTTTTATCATCATACAAGTTGACTAATATC
ATTAATTTGTGAGGAACATGGGTCTTTTTGGAAAGTCAGACGACTCAACG
CCAACTGAATCTCTATGGAATCGTTTAACCAAGCATCATCGCAAACAAGA
AAAGTCCAACTGCAACAATTCACCACCGAACCAAGTGACAATAAGGTCAC
AGAATAAGCATCATATCAAGTCCCCTCTCGCAAAAATTACTGAAGAATCA
AAAAAGGAAAATTTTCGATTATCTTTACAGTCTTTGCGATCAAGATCCAC
CAGCTCTCCCAGTCAATCTCATCAACAATATCGTGTCAGCTGCTCTGGAT
CCGATCAACTTGATTCTCGACTGAGAACTAGCAAATTGCAATGTGAACAA
CTGAAAAAGAAAGTCGCTACTATAAGTTTGGAATGCAACAAATTAGAAAG
TCAATGTAGAGAATTGAAGGAAGTAAAAGAACATCTTTTATCATTTCAGT
CGGACGTTTCAATGCTAAAACGAAAAGAAAAAGTCACAACAGAAATCCAA
CAGCGACTCAATCTGCTCGACGAAGAGAATTCCATCATGAGAGATCAGAT
TGAAAAATTACGAATAAAAGTATCAGATTTGGACTCAGAGATCGATCCAG
ATCTGATCAACAAACGTCTCGATCAATTAGAAATCGACAGCCATCAGTTG
ACGTCAATAACTTTACAGAATCGTAGAGATCACGACAATTTTTCCCTAGA
TGTCGGTAACCAGTTAGTAGAAACCTTTATCACTCAACAGACGATTTACG
AGGAGTTTCGACGACTTCAACATCGATTAGTGTCAGTGGAACGTCAAAAT
CAGATCATGGCAGATCTGATCCATTATCACTGTCACAATTCTCCGAGAAC
TCCTATCAATCGACCAATGACCAATTCTGATTCGAGCAGAGGCCCTTTGT
CAATGCAAGCCAGTCTGGAAGCTGCCTCATTGTCCCTCTCCCCGCCATCC
TCAGACCGAGAAGCAGAAAAAATCAACACGAGTCCTTCCAATCTCGACTG
GCAGCTTACCGACCAATCTGACAGTATTTTTCTCTGTGACACACTGAATA
AGAGCTCGGAACCCAGTGGTGAAGTACTAAATTTTGATAAAGGCAAGAAT
TATTATAAGATTGATTTCACCACCTACAGTGAATCATTGAACACTTTACC
TTTGACGGATCTGTCAATTGGATCCATTCTATCAACCGAAGAACAAAGTG
AAACAATTTATGTAACACCTCATCTCAGGAATAACAGTTGTGAAACAGAA
ACGAGCAATCTTGATAAAAGTGGAATCTTACAACAGGATAGCATAAATAA
GTGTTCTTGCTTCAAATATCAATCTATTTCAAGTAGTCCTCATATGCATT
CTCAGAAGGACGACGGCTACTATTCAACGTCGCATGACGGAACGATGAAT
ATAACTGGAACAATGCTGACAATTTCCGATTCCACTCATAAACCAATAGC
TGAATTCTCTGACAAAAAAAAGAGATATTTCATACTGACAAAACACCTGC
AAAAATCCCACGGTAGATCAAAGAGAATATTTCAAGTGTTACAATCGAGC
ATGACGATAACAGTGCGCTACAGTGTTGATTTAGAAACTCAGCTTTATAA
TAGAAATCTTCGAGAAAAACAGCACAAACAAAGAGAGTCTCATTTAGTAG
AAGATGAAGAAGCCCAGGTATTCTCAGACACAGAGCTGTACGGAACTCGA
TTTTGCATTGATTCGGATCTGGAAGATGACGAGCTCCCTTCTTTATTTGC
TTCCAATAAAACTGTGCCGATCAAACGGATAATCAATCACGGTTATTCCA
ACAAATCGATCAAAAATGAATCCCGACATATCTCATCCCTTCCTCCACTT
ATTGAGCACGTTTCTGAGAGAGAACGTAAAATTGAAATAAAGTCATCAAA
ACAAAGCCGTATAGTGCCTCCTCGAGTACGACCCAAATCATCAGGTATAC
CCAGTTCGAGCTCACAAAGGTTATGTGAAGCAAGAAAGTCAAAAGACAAA
CAAATAATCCAAAAATCAGAAACTCATGTGAAAACAGTTACACAATCACC
ACTCAGCACCAGAAGCAATTCCAAAGAAATTATCAATAGGAAACCCCCAA
AGAGTGTTTCATCCCCAAAATCATGTAAACTGAAGACAAATGAATCCACT
AAATCTTCACCTGGAATGAAAATTCACAAACAATCAATTCCACGCAATGA
ACCAGCTAAACCTCCACCTGTACCACCTAGACCGAAGAAAAAAACAGATT
CATTTTTGAATTGTATTTATGAGAAAGATCTAGCATCTCTTGATTATGTC
AACGATTCTCAAATACGAGTATCTCCTGATGGGTGTCAAGATACAAAACC
AAACTACAGCAACCTTCCTCCTCAATTTTTTACAAACATTGAAACAAATA
GGAAAGTACGTAGCGATTTCTCCTCACCTCTGGATGAATATTTCATGGAA
GAAGATGTCGATGAAAAGATCTCTCGGCAGCTCAATGAATTTGAAGACTA
TTTTGATCAGGAATTCATCTCAGAATTGGAAAACTACCAACTACCAAAAA
GTTCCGTCAATATGCTTGTTCTCCAGCATTTCAAATAATTACTATTTGAT
TTTATGACAATTTTATCTCGGGGACCATTTCAAACAAATAATAATCTTTT
ACCTATATCTATTATCACAATTTTTATCTTCCATGTTGTTTAAATGTGCC
TTTAAATGACATGGCGCGCTGAGTGTCCGTTTTAAAAATTTTAATTTTCC
TCTTCATTTTCTTTGATCAGGAATAACAATTATTTATTAT
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protein sequence of SMED30031435-orf-1

>SMED30031435-orf-1 ID=SMED30031435-orf-1|Name=SMED30031435-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=857bp
MGLFGKSDDSTPTESLWNRLTKHHRKQEKSNCNNSPPNQVTIRSQNKHHI
KSPLAKITEESKKENFRLSLQSLRSRSTSSPSQSHQQYRVSCSGSDQLDS
RLRTSKLQCEQLKKKVATISLECNKLESQCRELKEVKEHLLSFQSDVSML
KRKEKVTTEIQQRLNLLDEENSIMRDQIEKLRIKVSDLDSEIDPDLINKR
LDQLEIDSHQLTSITLQNRRDHDNFSLDVGNQLVETFITQQTIYEEFRRL
QHRLVSVERQNQIMADLIHYHCHNSPRTPINRPMTNSDSSRGPLSMQASL
EAASLSLSPPSSDREAEKINTSPSNLDWQLTDQSDSIFLCDTLNKSSEPS
GEVLNFDKGKNYYKIDFTTYSESLNTLPLTDLSIGSILSTEEQSETIYVT
PHLRNNSCETETSNLDKSGILQQDSINKCSCFKYQSISSSPHMHSQKDDG
YYSTSHDGTMNITGTMLTISDSTHKPIAEFSDKKKRYFILTKHLQKSHGR
SKRIFQVLQSSMTITVRYSVDLETQLYNRNLREKQHKQRESHLVEDEEAQ
VFSDTELYGTRFCIDSDLEDDELPSLFASNKTVPIKRIINHGYSNKSIKN
ESRHISSLPPLIEHVSERERKIEIKSSKQSRIVPPRVRPKSSGIPSSSSQ
RLCEARKSKDKQIIQKSETHVKTVTQSPLSTRSNSKEIINRKPPKSVSSP
KSCKLKTNESTKSSPGMKIHKQSIPRNEPAKPPPVPPRPKKKTDSFLNCI
YEKDLASLDYVNDSQIRVSPDGCQDTKPNYSNLPPQFFTNIETNRKVRSD
FSSPLDEYFMEEDVDEKISRQLNEFEDYFDQEFISELENYQLPKSSVNML
VLQHFK*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000070intestinal phagocyte
PLANA:0000099neuron
PLANA:0000101muscle cell
PLANA:0000140anterior region of the whole animal
PLANA:0003116parenchymal cell
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 150..191
NoneNo IPR availableCOILSCoilCoilcoord: 95..136
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 22..50
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 653..667
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 668..720
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..48
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 302..321
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 69..92
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 625..743
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 70..92