Charged multivesicular body protein 1a

Overview
NameCharged multivesicular body protein 1a
Smed IDSMED30031427
Length (bp)1127
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Charged multivesicular body protein 1a (SMED30031427) t-SNE clustered cells

Violin plots show distribution of expression levels for Charged multivesicular body protein 1a (SMED30031427) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Charged multivesicular body protein 1a (SMED30031427) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Charged multivesicular body protein 1a (SMED30031427) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30031427

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 5

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
intestinal phagocyteSMED30031427SMESG000066130.1 SMESG000065981.1 SMESG000032279.1 SMESG000021989.1 SMESG000018098.1 Contig5740GPL15192PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30031427SMESG000060068.1 Contig5740GPL15192PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
gutSMED30031427SMESG000060068.1 dd_Smed_v4_1645_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30031427SMESG000060068.1 dd_Smed_v4_1645_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30031427SMESG000060068.1 dd_Smed_v4_1645_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Charged multivesicular body protein 1a vs. Ensembl Human
Match: CHMP1A (charged multivesicular body protein 1A [Source:HGNC Symbol;Acc:HGNC:8740])

HSP 1 Score: 221.861 bits (564), Expect = 6.420e-71
Identity = 107/200 (53.50%), Postives = 156/200 (78.00%), Query Frame = 3 
Query:   69 LEETLFQLKFSGKQIDRFAKKAEKDQKIEQGKVKKALLQKNVEGAKIYAENAIRKKNECLNYMRLSSKLDAVSSRIQTAMTMKQVMHGIQNVTKDLEKAMASMDLEKIDRIMSKFESQFEDLDVRTSTIENAMGNAVTLSAPEDQVNSLIKQVAEENGLEIMNDLSDLKLNXXXXXXXXXXXXXXPAREDDLTKRLAALR 668
            +++TLFQLKF+ KQ+++ AKKAEKD K EQ KVKKALLQKNVE A++YAENAIRKKNE +N++R++S++DAV+S++QTA+TMK V   +  VTK L+KA+++MDL+K+  +M +FE Q ++LDV TS +E++M +A TL+ P++QV+SLI Q+AEENGLE+++ LS L        + +       ++ED L++RLAALR
Sbjct:    1 MDDTLFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQNLDVHTSVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLP-----EGASAVGESSVRSQEDQLSRRLAALR 195
[Close]
BLAST of Charged multivesicular body protein 1a vs. Ensembl Human
Match: CHMP1A (charged multivesicular body protein 1A [Source:HGNC Symbol;Acc:HGNC:8740])

HSP 1 Score: 201.83 bits (512), Expect = 2.568e-63
Identity = 101/200 (50.50%), Postives = 148/200 (74.00%), Query Frame = 3 
Query:   69 LEETLFQLKFSGKQIDRFAKKAEKDQKIEQGKVKKALLQKNVEGAKIYAENAIRKKNECLNYMRLSSKLDAVSSRIQTAMTMKQVMHGIQNVTKDLEKAMASMDLEKIDRIMSKFESQFEDLDVRTSTIENAMGNAVTLSAPEDQVNSLIKQVAEENGLEIMNDLSDLKLNXXXXXXXXXXXXXXPAREDDLTKRLAALR 668
            +++TLFQLKF+ KQ+++ AKKAEKD K EQ KVKKALLQKNVE A++YAENAIRKKNE +N++R++S++DAV+S++   M           VTK L+KA+++MDL+K+  +M +FE Q ++LDV TS +E++M +A TL+ P++QV+SLI Q+AEENGLE+++ LS L        + +       ++ED L++RLAALR
Sbjct:    1 MDDTLFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVTKNMA---------QVTKALDKALSTMDLQKVSSVMDRFEQQVQNLDVHTSVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLP-----EGASAVGESSVRSQEDQLSRRLAALR 186
[Close]
BLAST of Charged multivesicular body protein 1a vs. Ensembl Human
Match: CHMP1A (charged multivesicular body protein 1A [Source:HGNC Symbol;Acc:HGNC:8740])

HSP 1 Score: 166.007 bits (419), Expect = 1.982e-49
Identity = 76/129 (58.91%), Postives = 107/129 (82.95%), Query Frame = 3 
Query:   69 LEETLFQLKFSGKQIDRFAKKAEKDQKIEQGKVKKALLQKNVEGAKIYAENAIRKKNECLNYMRLSSKLDAVSSRIQTAMTMKQVMHGIQNVTKDLEKAMASMDLEKIDRIMSKFESQFEDLDVRTSTI 455
            +++TLFQLKF+ KQ+++ AKKAEKD K EQ KVKKALLQKNVE A++YAENAIRKKNE +N++R++S++DAV+S++QTA+TMK V   +  VTK L+KA+++MDL+K+  +M +FE Q ++LDV TS  
Sbjct:    1 MDDTLFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQNLDVHTSVC 129
[Close]
BLAST of Charged multivesicular body protein 1a vs. Ensembl Human
Match: CHMP1B (charged multivesicular body protein 1B [Source:HGNC Symbol;Acc:HGNC:24287])

HSP 1 Score: 139.813 bits (351), Expect = 3.233e-39
Identity = 86/201 (42.79%), Postives = 142/201 (70.65%), Query Frame = 3 
Query:   66 NLEETLFQLKFSGKQIDRFAKKAEKDQKIEQGKVKKALLQKNVEGAKIYAENAIRKKNECLNYMRLSSKLDAVSSRIQTAMTMKQVMHGIQNVTKDLEKAMASMDLEKIDRIMSKFESQFEDLDVRTSTIENAMGNAVTLSAPEDQVNSLIKQVAEENGLEIMNDLSDLKLNXXXXXXXXXXXXXXPAREDDLTKRLAALR 668
            N+E+ LF LKF+ K++ R AKK +K++K E+ K+KKA+ + N+E A+I+AENAIR+KN+ +N++R+S+++DAV++R+QTA+TM +V   +  V K ++  + +M+LEKI  +M KFE QFE LDV+T  +E+ M +  TL+ P++QV+ L++++A+E GL       DL +      +GS  +    A +D+L++RLA LR
Sbjct:    3 NMEKHLFNLKFAAKELSRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGL-------DLNMELPQGQTGSVGTSVASAEQDELSQRLARLR 196
[Close]
BLAST of Charged multivesicular body protein 1a vs. Ensembl Human
Match: CHMP1A (charged multivesicular body protein 1A [Source:HGNC Symbol;Acc:HGNC:8740])

HSP 1 Score: 125.561 bits (314), Expect = 1.639e-34
Identity = 64/136 (47.06%), Postives = 100/136 (73.53%), Query Frame = 3 
Query:  261 LSSKLDAVSSRIQTAMTMKQVMHGIQNVTKDLEKAMASMDLEKIDRIMSKFESQFEDLDVRTSTIENAMGNAVTLSAPEDQVNSLIKQVAEENGLEIMNDLSDLKLNXXXXXXXXXXXXXXPAREDDLTKRLAALR 668
            ++S++DAV+S++QTA+TMK V   +  VTK L+KA+++MDL+K+  +M +FE Q ++LDV TS +E++M +A TL+ P++QV+SLI Q+AEENGLE+++ LS L     +V   S       ++ED L++RLAALR
Sbjct:    1 MASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQNLDVHTSVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLPEGASAVGESSVR-----SQEDQLSRRLAALR 131
[Close]
BLAST of Charged multivesicular body protein 1a vs. Ensembl Celegans
Match: did-2 (Doa4-Independent Degradation, homologous to yeast Did2 [Source:UniProtKB/TrEMBL;Acc:Q9TXI3])

HSP 1 Score: 165.622 bits (418), Expect = 2.490e-49
Identity = 86/200 (43.00%), Postives = 139/200 (69.50%), Query Frame = 3 
Query:   69 LEETLFQLKFSGKQIDRFAKKAEKDQKIEQGKVKKALLQKNVEGAKIYAENAIRKKNECLNYMRLSSKLDAVSSRIQTAMTMKQVMHGIQNVTKDLEKAMASMDLEKIDRIMSKFESQFEDLDVRTSTIENAMGNAVTLSAPEDQVNSLIKQVAEENGLEIMNDLSDLKLNXXXXXXXXXXXXXXPAREDDLTKRLAALR 668
            LE+ LF LKF+ KQ+++ A++ EKD+K+E+ K+  A+ + N E A+++AENAIRKKNE +NY+++++++DAV++R+QTA T K+V   +  V K +E AM SM+LEK+ ++M +FE  FEDLDV T T+E  M     L+AP+ QV++LI + A++ G+E+  +L        +V +   +  +  + + DLT+RLAALR
Sbjct:   10 LEKHLFDLKFAAKQLEKNAQRCEKDEKVEKDKLTAAIKKGNKEVAQVHAENAIRKKNEAVNYIKMAARIDAVAARVQTAATQKRVTASMSGVVKAMESAMKSMNLEKVQQLMDRFERDFEDLDVTTKTMEKTMDGTTVLNAPKSQVDALIAEAADKAGIELNQELP------SNVPTALPTGTQAVSEDKDLTERLAALR 203
[Close]
BLAST of Charged multivesicular body protein 1a vs. Ensembl Celegans
Match: vps-2 (Related to yeast Vacuolar Protein Sorting factor [Source:UniProtKB/TrEMBL;Acc:Q9U2F6])

HSP 1 Score: 53.9138 bits (128), Expect = 3.749e-8
Identity = 33/156 (21.15%), Postives = 86/156 (55.13%), Query Frame = 3 
Query:  105 KQIDRFAKKAEKDQKIEQGKVKKALLQKNVEGAKIYAENAIRKKNECLNYMRLSSKLDAVSSRIQTAMTMKQVMHGIQNVTKDLEKAMASMDLEKIDRIMSKFESQFEDLDVRTSTIENAMGNAVTLSAPEDQVNSLIKQVAEENGLEIMNDLSDL 572
            +++DR   + E  +K     +K    +  ++  K+ A++ +R +     ++ + + + AVS ++QT  +   +   ++ VTK ++     ++L +I +IM +FE Q E +D++   + +A+ +A+  +  E++ + ++ QV +E G+++  +++ L
Sbjct:   27 RELDRERARMEAQEKKVIADIKNMAKKNQMDSVKVMAKDLVRTRRYIKKFIVMKANIQAVSLKVQTLKSQDAMASAMKGVTKAMQSMNRQLNLPQIQKIMMEFEKQSEIMDMKEEVMGDAIDDALGDAGDEEETDQIVNQVLDELGIQMGEEMAGL 182
[Close]
BLAST of Charged multivesicular body protein 1a vs. Ensembl Fly
Match: Chmp1 (gene:FBgn0036805 transcript:FBtr0345383)

HSP 1 Score: 154.066 bits (388), Expect = 7.800e-45
Identity = 91/206 (44.17%), Postives = 147/206 (71.36%), Query Frame = 3 
Query:   54 FNKPNLEETLFQLKFSGKQIDRFAKKAEKDQKIEQGKVKKALLQKNVEGAKIYAENAIRKKNECLNYMRLSSKLDAVSSRIQTAMTMKQVMHGIQNVTKDLEKAMASMDLEKIDRIMSKFESQFEDLDVRTSTIENAMGNAVTLSAPEDQVNSLIKQVAEENGLEIMNDLSDLKLNXXXXXXXXXXXXXXPAREDDLTKRLAALRQ 671
             +  ++E+ LF LKF+ K+++R +KK EK++K+E+ K KKA+ + N++ A+I+AENAIR+KN+ +NY+R+S+++DAV+SR+Q+A+T ++V   +  V K ++ AM  M+LEKI  +M KFESQFEDLDV++S +E  M + VT S P+  V++L++QVA+E GLE+     +++L  G       +S      +D+LT+RLA LRQ
Sbjct:    1 MSTSSMEKHLFNLKFAVKELERNSKKCEKEEKLEKAKAKKAIQKGNMDVARIHAENAIRQKNQAVNYLRMSARVDAVASRVQSALTTRKVTGSMAGVVKAMDAAMKGMNLEKISSLMEKFESQFEDLDVQSSVMEGTMSDTVTTSVPQGDVDNLLQQVADEAGLEL-----NMELPSGVQSQSVGASTAVSQEQDELTQRLARLRQ 201
[Close]
BLAST of Charged multivesicular body protein 1a vs. Ensembl Fly
Match: Chmp1 (gene:FBgn0036805 transcript:FBtr0075092)

HSP 1 Score: 154.066 bits (388), Expect = 7.800e-45
Identity = 91/206 (44.17%), Postives = 147/206 (71.36%), Query Frame = 3 
Query:   54 FNKPNLEETLFQLKFSGKQIDRFAKKAEKDQKIEQGKVKKALLQKNVEGAKIYAENAIRKKNECLNYMRLSSKLDAVSSRIQTAMTMKQVMHGIQNVTKDLEKAMASMDLEKIDRIMSKFESQFEDLDVRTSTIENAMGNAVTLSAPEDQVNSLIKQVAEENGLEIMNDLSDLKLNXXXXXXXXXXXXXXPAREDDLTKRLAALRQ 671
             +  ++E+ LF LKF+ K+++R +KK EK++K+E+ K KKA+ + N++ A+I+AENAIR+KN+ +NY+R+S+++DAV+SR+Q+A+T ++V   +  V K ++ AM  M+LEKI  +M KFESQFEDLDV++S +E  M + VT S P+  V++L++QVA+E GLE+     +++L  G       +S      +D+LT+RLA LRQ
Sbjct:    1 MSTSSMEKHLFNLKFAVKELERNSKKCEKEEKLEKAKAKKAIQKGNMDVARIHAENAIRQKNQAVNYLRMSARVDAVASRVQSALTTRKVTGSMAGVVKAMDAAMKGMNLEKISSLMEKFESQFEDLDVQSSVMEGTMSDTVTTSVPQGDVDNLLQQVADEAGLEL-----NMELPSGVQSQSVGASTAVSQEQDELTQRLARLRQ 201
[Close]
BLAST of Charged multivesicular body protein 1a vs. Ensembl Fly
Match: Vps2 (gene:FBgn0039402 transcript:FBtr0084967)

HSP 1 Score: 56.225 bits (134), Expect = 1.142e-8
Identity = 41/156 (26.28%), Postives = 85/156 (54.49%), Query Frame = 3 
Query:  105 KQIDRFAKKAEKDQKIEQGKVKKALLQKNVEGAKIYAENAIRKKNECLNYMRLSSKLDAVSSRIQTAMTMKQVMHGIQNVTKDLEKAMASMDLEKIDRIMSKFESQFEDLDVRTSTIENAMGNAVTLSAPEDQVNSLIKQVAEENGLEIMNDLSDL 572
            + +DR   K E+ +K     +KK   +  ++  KI A++ +R +     +M + + + AVS +IQT  +   +   ++ VTK ++     ++L +I +I+  FE Q E +D++   I +A+ +A+     E++ ++++ QV +E GL++   L DL
Sbjct:   27 RDLDRERMKMEQQEKKIIADIKKMAKEGQMDAVKIMAKDLVRTRRYAKKFMLMKANIQAVSLKIQTLKSQNTMAQAMKGVTKAMQNMNRQLNLPQIQKILQDFEKQSEMMDMKEEMINDAIDDAMEDEGDEEETDAVVSQVLDELGLQLGEQLGDL 182
[Close]
BLAST of Charged multivesicular body protein 1a vs. Ensembl Zebrafish
Match: chmp1a (charged multivesicular body protein 1A [Source:NCBI gene;Acc:393535])

HSP 1 Score: 218.779 bits (556), Expect = 6.319e-70
Identity = 111/200 (55.50%), Postives = 154/200 (77.00%), Query Frame = 3 
Query:   69 LEETLFQLKFSGKQIDRFAKKAEKDQKIEQGKVKKALLQKNVEGAKIYAENAIRKKNECLNYMRLSSKLDAVSSRIQTAMTMKQVMHGIQNVTKDLEKAMASMDLEKIDRIMSKFESQFEDLDVRTSTIENAMGNAVTLSAPEDQVNSLIKQVAEENGLEIMNDLSDLKLNXXXXXXXXXXXXXXPAREDDLTKRLAALR 668
            L +TLFQLKF+ KQ++R AKKAEKD K EQ KVKKAL QKNVE A++YAENAIRKKNE LN++R++S++DAV+S++QTA+TMK V   +  VTK L+KA++SMDL+K+  +M KFE+Q ++LDV TS +E++M +A TLS P+ QV+ LI Q+AEE+GLE+ + LS L     ++   S  ++    +ED L++RLAALR
Sbjct:    1 LTDTLFQLKFTSKQLERLAKKAEKDSKSEQAKVKKALQQKNVECARVYAENAIRKKNEGLNWLRMASRVDAVASKVQTALTMKGVAKNMTQVTKALDKALSSMDLQKVSAVMDKFETQVQNLDVHTSVMEDSMSSATTLSTPQQQVDDLILQIAEESGLEVEDQLSQLPAGASALGETSARAQE---KEDQLSRRLAALR 197
[Close]
BLAST of Charged multivesicular body protein 1a vs. Ensembl Zebrafish
Match: chmp1b (chromatin modifying protein 1B [Source:NCBI gene;Acc:336426])

HSP 1 Score: 139.428 bits (350), Expect = 3.172e-39
Identity = 87/201 (43.28%), Postives = 143/201 (71.14%), Query Frame = 3 
Query:   66 NLEETLFQLKFSGKQIDRFAKKAEKDQKIEQGKVKKALLQKNVEGAKIYAENAIRKKNECLNYMRLSSKLDAVSSRIQTAMTMKQVMHGIQNVTKDLEKAMASMDLEKIDRIMSKFESQFEDLDVRTSTIENAMGNAVTLSAPEDQVNSLIKQVAEENGLEIMNDLSDLKLNXXXXXXXXXXXXXXPAREDDLTKRLAALR 668
            ++E+ LF LKF+ K++ R +KK +K++K E+ KVKKA+ + N+E A+I+AENAIR+KN+ +N++R+S+++DAV++R+QTA+TM QV   +  V K ++  + SM+LEKI  +M KFE QFE LDV+T+ +E++M +  TL+ P+ QV++L+ ++A+E GL       DL +      +GS  +    A +D+L++RLA LR
Sbjct:    3 SMEKHLFNLKFAAKELQRNSKKCDKEEKAEKVKVKKAIQKGNMEVARIHAENAIRQKNQSVNFLRMSARVDAVAARVQTAVTMNQVTKSMAGVVKGMDATLKSMNLEKISGLMEKFERQFETLDVQTAQMEDSMSSTTTLTTPQGQVDTLMMEMADEAGL-------DLNMELPQGQTGSVGTSVASAEQDELSQRLAKLR 196
[Close]
BLAST of Charged multivesicular body protein 1a vs. Ensembl Zebrafish
Match: chmp1b (chromatin modifying protein 1B [Source:NCBI gene;Acc:336426])

HSP 1 Score: 139.428 bits (350), Expect = 3.172e-39
Identity = 87/201 (43.28%), Postives = 143/201 (71.14%), Query Frame = 3 
Query:   66 NLEETLFQLKFSGKQIDRFAKKAEKDQKIEQGKVKKALLQKNVEGAKIYAENAIRKKNECLNYMRLSSKLDAVSSRIQTAMTMKQVMHGIQNVTKDLEKAMASMDLEKIDRIMSKFESQFEDLDVRTSTIENAMGNAVTLSAPEDQVNSLIKQVAEENGLEIMNDLSDLKLNXXXXXXXXXXXXXXPAREDDLTKRLAALR 668
            ++E+ LF LKF+ K++ R +KK +K++K E+ KVKKA+ + N+E A+I+AENAIR+KN+ +N++R+S+++DAV++R+QTA+TM QV   +  V K ++  + SM+LEKI  +M KFE QFE LDV+T+ +E++M +  TL+ P+ QV++L+ ++A+E GL       DL +      +GS  +    A +D+L++RLA LR
Sbjct:    3 SMEKHLFNLKFAAKELQRNSKKCDKEEKAEKVKVKKAIQKGNMEVARIHAENAIRQKNQSVNFLRMSARVDAVAARVQTAVTMNQVTKSMAGVVKGMDATLKSMNLEKISGLMEKFERQFETLDVQTAQMEDSMSSTTTLTTPQGQVDTLMMEMADEAGL-------DLNMELPQGQTGSVGTSVASAEQDELSQRLAKLR 196
[Close]
BLAST of Charged multivesicular body protein 1a vs. Ensembl Zebrafish
Match: chmp1a (charged multivesicular body protein 1A [Source:NCBI gene;Acc:393535])

HSP 1 Score: 122.865 bits (307), Expect = 8.795e-34
Identity = 64/136 (47.06%), Postives = 99/136 (72.79%), Query Frame = 3 
Query:  261 LSSKLDAVSSRIQTAMTMKQVMHGIQNVTKDLEKAMASMDLEKIDRIMSKFESQFEDLDVRTSTIENAMGNAVTLSAPEDQVNSLIKQVAEENGLEIMNDLSDLKLNXXXXXXXXXXXXXXPAREDDLTKRLAALR 668
            ++S++DAV+S++QTA+TMK V   +  VTK L+KA++SMDL+K+  +M KFE+Q ++LDV TS +E++M +A TLS P+ QV+ LI Q+AEE+GLE+ + LS L     ++   S  ++    +ED L++RLAALR
Sbjct:    1 MASRVDAVASKVQTALTMKGVAKNMTQVTKALDKALSSMDLQKVSAVMDKFETQVQNLDVHTSVMEDSMSSATTLSTPQQQVDDLILQIAEESGLEVEDQLSQLPAGASALGETSARAQE---KEDQLSRRLAALR 133
[Close]
BLAST of Charged multivesicular body protein 1a vs. Ensembl Zebrafish
Match: chmp2a (charged multivesicular body protein 2A [Source:NCBI gene;Acc:798901])

HSP 1 Score: 56.6102 bits (135), Expect = 7.681e-9
Identity = 54/187 (28.88%), Postives = 101/187 (54.01%), Query Frame = 3 
Query:   45 MFGFNKPNLEETLFQ----LKFSGKQIDRFAKKAEKDQKIEQGKVKKALLQKNVEGAKIYAENAIRKKNECLNYMRLSSKLDAVSSRIQTAMT---MKQVMHGIQNVTKDLEKAMASMD----LEKIDRIMSKFESQFEDLDVRTSTIENAMGNAVTLSAPEDQVNSLIKQVAEENGLEIMNDLSDL 572
            +FG  K   EE L Q    L  + + +DR  ++ E+ +K     +KK   Q  ++  KI A++ +R +     ++ + + + AVS +IQT  +   M Q M G+        KAMA+M+    L +I +IM +FE Q E +D++   + +A+ +A+     E++ ++++ QV +E GL + ++LS+L
Sbjct:    4 LFGRRK-TPEEMLRQNQRALNRAMRDLDRERQRLEQQEKKIIADIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGV-------TKAMATMNRQLKLPQIQKIMMEFERQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLSDELSNL 182
[Close]
BLAST of Charged multivesicular body protein 1a vs. Ensembl Xenopus
Match: scube2 (signal peptide, CUB domain, EGF-like 2 [Source:Xenbase;Acc:XB-GENE-5945055])

HSP 1 Score: 215.698 bits (548), Expect = 1.483e-68
Identity = 107/200 (53.50%), Postives = 154/200 (77.00%), Query Frame = 3 
Query:   69 LEETLFQLKFSGKQIDRFAKKAEKDQKIEQGKVKKALLQKNVEGAKIYAENAIRKKNECLNYMRLSSKLDAVSSRIQTAMTMKQVMHGIQNVTKDLEKAMASMDLEKIDRIMSKFESQFEDLDVRTSTIENAMGNAVTLSAPEDQVNSLIKQVAEENGLEIMNDLSDLKLNXXXXXXXXXXXXXXPAREDDLTKRLAALR 668
            +++TLFQLKF+ KQ+++ AKKAEKD   EQ KVKKAL QKNVE A++YAENAIRKKNE LN++R++S++DAV+S++QTA+TMK V   +  VTK L+KA++SMDL+K+  +M KF+ Q ++LDV TS +E++M +A+TL+ P++QV++LI Q+AEENGLE+M+     +LN+    + S         ED L++RLAALR
Sbjct:    1 MDDTLFQLKFTSKQLEKLAKKAEKDSNTEQAKVKKALQQKNVEVARVYAENAIRKKNEGLNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSSMDLQKVSAVMDKFDQQVQNLDVHTSVMEDSMSSAMTLTTPQEQVDNLIVQIAEENGLEVMD-----QLNQLPQGASSVGESSTRTPEDQLSRRLAALR 195
[Close]
BLAST of Charged multivesicular body protein 1a vs. Ensembl Xenopus
Match: scube2 (signal peptide, CUB domain, EGF-like 2 [Source:Xenbase;Acc:XB-GENE-5945055])

HSP 1 Score: 176.407 bits (446), Expect = 1.735e-53
Identity = 88/163 (53.99%), Postives = 126/163 (77.30%), Query Frame = 3 
Query:   87 QLKFSGKQIDRFAKK-AEKDQKIEQGKVKKALLQKNVEGAKIYAENAIRKKNECLNYMRLSSKLDAVSSRIQTAMTMKQVMHGIQNVTKDLEKAMASMDLEKIDRIMSKFESQFEDLDVRTSTIENAMGNAVTLSAPEDQVNSLIKQVAEENGLEIMNDLSDL 572
            Q +F G    R  K   +KD   EQ KVKKAL QKNVE A++YAENAIRKKNE LN++R++S++DAV+S++QTA+TMK V   +  VTK L+KA++SMDL+K+  +M KF+ Q ++LDV TS +E++M +A+TL+ P++QV++LI Q+AEENGLE+M+ L+ L
Sbjct:    3 QTQFFG--FGRTPKSTPKKDSNTEQAKVKKALQQKNVEVARVYAENAIRKKNEGLNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSSMDLQKVSAVMDKFDQQVQNLDVHTSVMEDSMSSAMTLTTPQEQVDNLIVQIAEENGLEVMDQLNQL 163
[Close]
BLAST of Charged multivesicular body protein 1a vs. Ensembl Xenopus
Match: chmp1b (charged multivesicular body protein 1B [Source:NCBI gene;Acc:448582])

HSP 1 Score: 135.961 bits (341), Expect = 9.860e-38
Identity = 87/201 (43.28%), Postives = 140/201 (69.65%), Query Frame = 3 
Query:   66 NLEETLFQLKFSGKQIDRFAKKAEKDQKIEQGKVKKALLQKNVEGAKIYAENAIRKKNECLNYMRLSSKLDAVSSRIQTAMTMKQVMHGIQNVTKDLEKAMASMDLEKIDRIMSKFESQFEDLDVRTSTIENAMGNAVTLSAPEDQVNSLIKQVAEENGLEIMNDLSDLKLNXXXXXXXXXXXXXXPAREDDLTKRLAALR 668
            ++E+ LF LKF+ K++ R AKK EK++K E+ K+KKA+ + N E A+I+AENAIR+KN+ +N++R+S+++DAV++R+QTA+TM +V   +  V K ++  + SM+LEKI  +M KFE QFE LDV+T  +E+ M N  TL+ P++QV++L+ ++A+E GL       DL +      +GS  +      +D+L++RLA LR
Sbjct:    3 SMEKNLFNLKFAAKELHRNAKKCEKEEKTEKAKIKKAIQKGNTEIARIHAENAIRQKNQGINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDTTLKSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSNTTTLTTPQNQVDNLLHEMADEAGL-------DLNMELPQGQTGSVGTSVASTEQDELSQRLARLR 196
[Close]
BLAST of Charged multivesicular body protein 1a vs. Ensembl Xenopus
Match: chmp1b (charged multivesicular body protein 1B [Source:NCBI gene;Acc:448582])

HSP 1 Score: 130.954 bits (328), Expect = 1.268e-35
Identity = 77/162 (47.53%), Postives = 122/162 (75.31%), Query Frame = 3 
Query:   66 NLEETLFQLKFSGKQIDRFAKKAEKDQKIEQGKVKKALLQKNVEGAKIYAENAIRKKNECLNYMRLSSKLDAVSSRIQTAMTMKQVMHGIQNVTKDLEKAMASMDLEKIDRIMSKFESQFEDLDVRTSTIENAMGNAVTLSAPEDQVNSLIKQVAEENGLEI 551
            N  E LF LKF+ K++ R AKK EK++K E+ K+KKA+ + N E A+I+AENAIR+KN+ +N++R+S+++DAV++R+QTA+TM +V   +  V K ++  + SM+LEKI  +M KFE QFE LDV+T  +E+ M N  TL+ P++QV++L+ ++A+E GL++
Sbjct:    3 NQSENLFNLKFAAKELHRNAKKCEKEEKTEKAKIKKAIQKGNTEIARIHAENAIRQKNQGINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDTTLKSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSNTTTLTTPQNQVDNLLHEMADEAGLDL 164
[Close]
BLAST of Charged multivesicular body protein 1a vs. Ensembl Xenopus
Match: nelfa (negative elongation factor complex member A [Source:Xenbase;Acc:XB-GENE-988837])

HSP 1 Score: 57.7658 bits (138), Expect = 4.240e-9
Identity = 55/187 (29.41%), Postives = 102/187 (54.55%), Query Frame = 3 
Query:   45 MFGFNKPNLEETLFQ----LKFSGKQIDRFAKKAEKDQKIEQGKVKKALLQKNVEGAKIYAENAIRKKNECLNYMRLSSKLDAVSSRIQTAMT---MKQVMHGIQNVTKDLEKAMASMD----LEKIDRIMSKFESQFEDLDVRTSTIENAMGNAVTLSAPEDQVNSLIKQVAEENGLEIMNDLSDL 572
            +FG  K   EE L Q    L  + +++DR  +K E+ +K     +KK   Q  ++  KI A++ +R +     ++ + + + AVS +IQT  +   M Q M G+        KAMA+M+    L +I +IM +FE Q E +D++   + +A+ +A+     E++ ++++ QV +E GL + ++LS+L
Sbjct:    4 LFGRRK-TPEEMLRQNQRALNKAMREMDRERQKLEQQEKKIIADIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGV-------TKAMATMNRQLKLPQIQKIMMEFEKQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLTDELSNL 182
[Close]
BLAST of Charged multivesicular body protein 1a vs. Ensembl Mouse
Match: Chmp1a (charged multivesicular body protein 1A [Source:MGI Symbol;Acc:MGI:1920159])

HSP 1 Score: 216.468 bits (550), Expect = 5.745e-69
Identity = 105/200 (52.50%), Postives = 155/200 (77.50%), Query Frame = 3 
Query:   69 LEETLFQLKFSGKQIDRFAKKAEKDQKIEQGKVKKALLQKNVEGAKIYAENAIRKKNECLNYMRLSSKLDAVSSRIQTAMTMKQVMHGIQNVTKDLEKAMASMDLEKIDRIMSKFESQFEDLDVRTSTIENAMGNAVTLSAPEDQVNSLIKQVAEENGLEIMNDLSDLKLNXXXXXXXXXXXXXXPAREDDLTKRLAALR 668
            +++TLFQLKF+ KQ+++ AKKAEKD K EQ KVKKAL QKNVE A++YAENAIRKKNE +N++R++S++DAV+S++QTA+TMK V   +  VTK L+KA+++MDL+K+  +M +FE Q ++LDV TS +E+++ +A TL+ P++QV+SLI Q+AEENGLE+++ LS L        + +       ++ED L++RLAALR
Sbjct:    1 MDDTLFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALQQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSAMDLQKVSAVMDRFEQQVQNLDVHTSVMEDSVSSATTLTTPQEQVDSLIVQIAEENGLEVLDQLSQLP-----EGASAVGESSVRSQEDQLSRRLAALR 195
[Close]
BLAST of Charged multivesicular body protein 1a vs. Ensembl Mouse
Match: Chmp1b (charged multivesicular body protein 1B [Source:MGI Symbol;Acc:MGI:1914314])

HSP 1 Score: 139.428 bits (350), Expect = 3.423e-39
Identity = 86/201 (42.79%), Postives = 143/201 (71.14%), Query Frame = 3 
Query:   66 NLEETLFQLKFSGKQIDRFAKKAEKDQKIEQGKVKKALLQKNVEGAKIYAENAIRKKNECLNYMRLSSKLDAVSSRIQTAMTMKQVMHGIQNVTKDLEKAMASMDLEKIDRIMSKFESQFEDLDVRTSTIENAMGNAVTLSAPEDQVNSLIKQVAEENGLEIMNDLSDLKLNXXXXXXXXXXXXXXPAREDDLTKRLAALR 668
            N+E+ LF LKF+ K+++R +KK +K++K E+ K+KKA+ + N+E A+I+AENAIR+KN+ +N++R+S+++DAV++R+QTA+TM +V   +  V K ++  + SM+LEKI  +M KFE QFE LDV+T  +E+ M +  TL+ P++QV+ L++++A+E GL       DL +      +GS  +    A +D+L++RLA LR
Sbjct:    3 NMEKHLFNLKFAAKELNRSSKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQGVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGL-------DLNMELPQGQTGSVGTSVASAEQDELSQRLARLR 196
[Close]
BLAST of Charged multivesicular body protein 1a vs. Ensembl Mouse
Match: 2610002M06Rik (RIKEN cDNA 2610002M06 gene [Source:MGI Symbol;Acc:MGI:1914278])

HSP 1 Score: 139.043 bits (349), Expect = 5.169e-39
Identity = 86/201 (42.79%), Postives = 141/201 (70.15%), Query Frame = 3 
Query:   66 NLEETLFQLKFSGKQIDRFAKKAEKDQKIEQGKVKKALLQKNVEGAKIYAENAIRKKNECLNYMRLSSKLDAVSSRIQTAMTMKQVMHGIQNVTKDLEKAMASMDLEKIDRIMSKFESQFEDLDVRTSTIENAMGNAVTLSAPEDQVNSLIKQVAEENGLEIMNDLSDLKLNXXXXXXXXXXXXXXPAREDDLTKRLAALR 668
            N+E+ LF LKF+ K+++R AKK +K++K E+ K+KKA+ + N E A+I+AENAIR+KN+ +N++R+S+++DAV++R+QTA+TM +V   +  V K ++  + SM+LEKI  +M KFE QFE LDV+T  +E+ M +  TL+ P++QV+ L++++A+E GL       DL +      +GS  +      +D+L++RLA LR
Sbjct:    3 NMEKHLFNLKFAAKELNRNAKKCDKEEKAEKAKIKKAIQKGNTEVARIHAENAIRQKNQAINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLRSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGL-------DLNMELPQGQTGSVGASVASTEQDELSQRLARLR 196
[Close]
BLAST of Charged multivesicular body protein 1a vs. Ensembl Mouse
Match: Chmp2a (charged multivesicular body protein 2A [Source:MGI Symbol;Acc:MGI:1916203])

HSP 1 Score: 56.6102 bits (135), Expect = 8.733e-9
Identity = 48/180 (26.67%), Postives = 97/180 (53.89%), Query Frame = 3 
Query:   45 MFGFNKPNLEETLFQ----LKFSGKQIDRFAKKAEKDQKIEQGKVKKALLQKNVEGAKIYAENAIRKKNECLNYMRLSSKLDAVSSRIQTAMTMKQVMHGIQNVTKDLEKAMASMDLEKIDRIMSKFESQFEDLDVRTSTIENAMGNAVTLSAPEDQVNSLIKQVAEENGLEIMNDLSDL 572
            +FG  K   EE L Q    L  + +++DR  +K E  +K     +KK   Q  ++  +I A++ +R +     ++ + + + AVS +IQT  +   +   ++ VTK +      + L +I +IM +FE Q E +D++   + +A+ +A+     E++ ++++ QV +E GL + ++LS+L
Sbjct:    4 LFGRRKTP-EELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVRIMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELSNL 182
[Close]
BLAST of Charged multivesicular body protein 1a vs. Ensembl Mouse
Match: Chmp2a (charged multivesicular body protein 2A [Source:MGI Symbol;Acc:MGI:1916203])

HSP 1 Score: 56.6102 bits (135), Expect = 8.733e-9
Identity = 48/180 (26.67%), Postives = 97/180 (53.89%), Query Frame = 3 
Query:   45 MFGFNKPNLEETLFQ----LKFSGKQIDRFAKKAEKDQKIEQGKVKKALLQKNVEGAKIYAENAIRKKNECLNYMRLSSKLDAVSSRIQTAMTMKQVMHGIQNVTKDLEKAMASMDLEKIDRIMSKFESQFEDLDVRTSTIENAMGNAVTLSAPEDQVNSLIKQVAEENGLEIMNDLSDL 572
            +FG  K   EE L Q    L  + +++DR  +K E  +K     +KK   Q  ++  +I A++ +R +     ++ + + + AVS +IQT  +   +   ++ VTK +      + L +I +IM +FE Q E +D++   + +A+ +A+     E++ ++++ QV +E GL + ++LS+L
Sbjct:    4 LFGRRKTP-EELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVRIMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELSNL 182
[Close]
BLAST of Charged multivesicular body protein 1a vs. UniProt/SwissProt
Match: sp|Q5R605|CHM1A_PONAB (Charged multivesicular body protein 1a OS=Pongo abelii OX=9601 GN=CHMP1A PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.083e-70
Identity = 107/200 (53.50%), Postives = 156/200 (78.00%), Query Frame = 3 
Query:   69 LEETLFQLKFSGKQIDRFAKKAEKDQKIEQGKVKKALLQKNVEGAKIYAENAIRKKNECLNYMRLSSKLDAVSSRIQTAMTMKQVMHGIQNVTKDLEKAMASMDLEKIDRIMSKFESQFEDLDVRTSTIENAMGNAVTLSAPEDQVNSLIKQVAEENGLEIMNDLSDLKLNXXXXXXXXXXXXXXPAREDDLTKRLAALR 668
            +++TLFQLKF+ KQ+++ AKKAEKD K EQ KVKKALLQKNVE A++YAENAIRKKNE +N++R++S++DAV+S++QTA+TMK V   +  VTK L+KA+++MDL+K+  +M +FE Q ++LDV TS +E++M +A TL+ P++QV+SLI Q+AEENGLE+++ LS L        + +       ++ED L++RLAALR
Sbjct:    1 MDDTLFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQNLDVHTSVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLP-----EGASAVGESSVRSQEDQLSRRLAALR 195
[Close]
BLAST of Charged multivesicular body protein 1a vs. UniProt/SwissProt
Match: sp|Q9HD42|CHM1A_HUMAN (Charged multivesicular body protein 1a OS=Homo sapiens OX=9606 GN=CHMP1A PE=1 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.083e-70
Identity = 107/200 (53.50%), Postives = 156/200 (78.00%), Query Frame = 3 
Query:   69 LEETLFQLKFSGKQIDRFAKKAEKDQKIEQGKVKKALLQKNVEGAKIYAENAIRKKNECLNYMRLSSKLDAVSSRIQTAMTMKQVMHGIQNVTKDLEKAMASMDLEKIDRIMSKFESQFEDLDVRTSTIENAMGNAVTLSAPEDQVNSLIKQVAEENGLEIMNDLSDLKLNXXXXXXXXXXXXXXPAREDDLTKRLAALR 668
            +++TLFQLKF+ KQ+++ AKKAEKD K EQ KVKKALLQKNVE A++YAENAIRKKNE +N++R++S++DAV+S++QTA+TMK V   +  VTK L+KA+++MDL+K+  +M +FE Q ++LDV TS +E++M +A TL+ P++QV+SLI Q+AEENGLE+++ LS L        + +       ++ED L++RLAALR
Sbjct:    1 MDDTLFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQNLDVHTSVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLP-----EGASAVGESSVRSQEDQLSRRLAALR 195
[Close]
BLAST of Charged multivesicular body protein 1a vs. UniProt/SwissProt
Match: sp|Q6PHF0|CHM1A_DANRE (Charged multivesicular body protein 1a OS=Danio rerio OX=7955 GN=chmp1a PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 5.859e-69
Identity = 110/200 (55.00%), Postives = 155/200 (77.50%), Query Frame = 3 
Query:   69 LEETLFQLKFSGKQIDRFAKKAEKDQKIEQGKVKKALLQKNVEGAKIYAENAIRKKNECLNYMRLSSKLDAVSSRIQTAMTMKQVMHGIQNVTKDLEKAMASMDLEKIDRIMSKFESQFEDLDVRTSTIENAMGNAVTLSAPEDQVNSLIKQVAEENGLEIMNDLSDLKLNXXXXXXXXXXXXXXPAREDDLTKRLAALR 668
            +++TLFQLKF+ KQ++R AKKAEKD K EQ KVKKAL QKNVE A++YAENAIRKKNE LN++R++S++DAV+S++QTA+TMK V   +  VTK L+KA++SMDL+K+  +M KFE+Q ++LDV TS +E++M +A TLS P+ QV+ LI Q+AEE+GLE+ + LS L     ++   S  ++    +ED L++RLAALR
Sbjct:    1 MDDTLFQLKFTSKQLERLAKKAEKDSKSEQAKVKKALQQKNVECARVYAENAIRKKNEGLNWLRMASRVDAVASKVQTALTMKGVAKNMTQVTKALDKALSSMDLQKVSAVMDKFETQVQNLDVHTSVMEDSMSSATTLSTPQQQVDDLILQIAEESGLEVEDQLSQLPAGASALGETSARAQE---KEDQLSRRLAALR 197
[Close]
BLAST of Charged multivesicular body protein 1a vs. UniProt/SwissProt
Match: sp|Q921W0|CHM1A_MOUSE (Charged multivesicular body protein 1a OS=Mus musculus OX=10090 GN=Chmp1a PE=1 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 4.019e-68
Identity = 105/200 (52.50%), Postives = 155/200 (77.50%), Query Frame = 3 
Query:   69 LEETLFQLKFSGKQIDRFAKKAEKDQKIEQGKVKKALLQKNVEGAKIYAENAIRKKNECLNYMRLSSKLDAVSSRIQTAMTMKQVMHGIQNVTKDLEKAMASMDLEKIDRIMSKFESQFEDLDVRTSTIENAMGNAVTLSAPEDQVNSLIKQVAEENGLEIMNDLSDLKLNXXXXXXXXXXXXXXPAREDDLTKRLAALR 668
            +++TLFQLKF+ KQ+++ AKKAEKD K EQ KVKKAL QKNVE A++YAENAIRKKNE +N++R++S++DAV+S++QTA+TMK V   +  VTK L+KA+++MDL+K+  +M +FE Q ++LDV TS +E+++ +A TL+ P++QV+SLI Q+AEENGLE+++ LS L        + +       ++ED L++RLAALR
Sbjct:    1 MDDTLFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALQQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSAMDLQKVSAVMDRFEQQVQNLDVHTSVMEDSVSSATTLTTPQEQVDSLIVQIAEENGLEVLDQLSQLP-----EGASAVGESSVRSQEDQLSRRLAALR 195
[Close]
BLAST of Charged multivesicular body protein 1a vs. UniProt/SwissProt
Match: sp|Q6NUD8|CHM1A_XENLA (Charged multivesicular body protein 1a OS=Xenopus laevis OX=8355 GN=chmp1a PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 9.652e-68
Identity = 106/200 (53.00%), Postives = 155/200 (77.50%), Query Frame = 3 
Query:   69 LEETLFQLKFSGKQIDRFAKKAEKDQKIEQGKVKKALLQKNVEGAKIYAENAIRKKNECLNYMRLSSKLDAVSSRIQTAMTMKQVMHGIQNVTKDLEKAMASMDLEKIDRIMSKFESQFEDLDVRTSTIENAMGNAVTLSAPEDQVNSLIKQVAEENGLEIMNDLSDLKLNXXXXXXXXXXXXXXPAREDDLTKRLAALR 668
            +++TLFQLKF+ KQ+++ AKKAEKD   EQ KVKKAL QKNVE A++YAENAIRKKNE LN++R++S++DAV+S++QTA+TMK V   +  VTK L+KA++SMDL+K+  +M KF+ Q ++LDV TS +E++M +A+TL+ P++QV++LI Q+AEENGLE+M+     +LN+    + S        +ED L++RLA+LR
Sbjct:    1 MDDTLFQLKFTAKQLEKLAKKAEKDSNTEQAKVKKALQQKNVEVARVYAENAIRKKNEGLNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSSMDLQKVSAVMDKFDQQVQNLDVHTSVMEDSMSSAMTLTTPQEQVDNLIVQIAEENGLEVMD-----QLNQLPQGASSVGESSTRTQEDQLSRRLASLR 195
[Close]
BLAST of Charged multivesicular body protein 1a vs. TrEMBL
Match: V4A901 (Uncharacterized protein OS=Lottia gigantea OX=225164 GN=LOTGIDRAFT_218604 PE=4 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 2.388e-80
Identity = 125/201 (62.19%), Postives = 166/201 (82.59%), Query Frame = 3 
Query:   69 LEETLFQLKFSGKQIDRFAKKAEKDQKIEQGKVKKALLQKNVEGAKIYAENAIRKKNECLNYMRLSSKLDAVSSRIQTAMTMKQVMHGIQNVTKDLEKAMASMDLEKIDRIMSKFESQFEDLDVRTSTIENAMGNAVTLSAPEDQVNSLIKQVAEENGLEIMNDLSDLKLNXXXXXXXXXXXXXXPAREDDLTKRLAALRQ 671
            ++++LFQL+F+ KQ++R A KAEKDQ+++Q KVKKAL QKNVEGAKIYAENAIRKKNE LN++R+++++DAVSS++QTA+TMK V   I NV+K L+KAM+SMDL K+++IMSKFE QFEDLDVRTST+E+AMG A TLS P+DQV +LI QVAEENGLE+++ + DL  N     S   + + E ++EDDL++RL ALRQ
Sbjct:    1 MDDSLFQLRFTTKQLERLASKAEKDQRVQQSKVKKALQQKNVEGAKIYAENAIRKKNESLNFLRMAARIDAVSSKVQTALTMKNVTKDISNVSKALDKAMSSMDLSKVEQIMSKFEKQFEDLDVRTSTMESAMGTATTLSTPQDQVEALIHQVAEENGLEMIDQIQDLNPN---TASLRSTDKGESSKEDDLSRRLQALRQ 198
[Close]
BLAST of Charged multivesicular body protein 1a vs. TrEMBL
Match: A0A3S0ZS03 (Uncharacterized protein OS=Elysia chlorotica OX=188477 GN=EGW08_006782 PE=4 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 2.418e-78
Identity = 124/200 (62.00%), Postives = 163/200 (81.50%), Query Frame = 3 
Query:   69 LEETLFQLKFSGKQIDRFAKKAEKDQKIEQGKVKKALLQKNVEGAKIYAENAIRKKNECLNYMRLSSKLDAVSSRIQTAMTMKQVMHGIQNVTKDLEKAMASMDLEKIDRIMSKFESQFEDLDVRTSTIENAMGNAVTLSAPEDQVNSLIKQVAEENGLEIMNDLSDLKLNXXXXXXXXXXXXXXPAREDDLTKRLAALR 668
            +E+TLFQL+F+ KQ++R +KKAEKDQK++Q KVKKAL QKN+EGA+IYAENAIRKKNE LNY+R ++++DAV S++QT + MK V+  I  V K L+KAM+SM+LEK++++M KFE QFEDLDVRTST+EN+MG A TLS P+DQV SLI+QVAEENGLE+M+ L D  L+  S    S +S  E ++EDDL++RL ALR
Sbjct:    1 MEDTLFQLRFTTKQLERLSKKAEKDQKLQQAKVKKALQQKNIEGAQIYAENAIRKKNESLNYLRFAARVDAVHSKVQTGLAMKNVVKDIGGVCKSLDKAMSSMNLEKVEQVMEKFEKQFEDLDVRTSTLENSMGAATTLSTPQDQVESLIQQVAEENGLEVMDQLQD--LHAPSTSIRSGASAAESSKEDDLSRRLQALR 198
[Close]
BLAST of Charged multivesicular body protein 1a vs. TrEMBL
Match: A0A2T7NIB6 (Uncharacterized protein OS=Pomacea canaliculata OX=400727 GN=C0Q70_19077 PE=4 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 3.986e-78
Identity = 126/200 (63.00%), Postives = 168/200 (84.00%), Query Frame = 3 
Query:   69 LEETLFQLKFSGKQIDRFAKKAEKDQKIEQGKVKKALLQKNVEGAKIYAENAIRKKNECLNYMRLSSKLDAVSSRIQTAMTMKQVMHGIQNVTKDLEKAMASMDLEKIDRIMSKFESQFEDLDVRTSTIENAMGNAVTLSAPEDQVNSLIKQVAEENGLEIMNDLSDLKLNXXXXXXXXXXXXXXPAREDDLTKRLAALR 668
            +E+ +FQL+F+ +Q++R A K+EK+QK++Q KVKKAL QKN+EGAKIYAENAIRKKNE LNY+R ++++DAV +++QTAM+MK V   IQ V K L+KAMASMDL+KID+IMSKFE QFEDLDVRTST+E++MG A+TLS P+DQV +LI+QVAEE+GLE+++ L DLK    SV + S++ ++E  REDDLT+RL ALR
Sbjct:    1 MEDMIFQLRFTTRQLERLAAKSEKEQKLQQTKVKKALQQKNIEGAKIYAENAIRKKNEGLNYLRFAARVDAVQAKVQTAMSMKTVAKDIQGVCKSLDKAMASMDLQKIDQIMSKFEKQFEDLDVRTSTMESSMGAAMTLSTPQDQVEALIQQVAEESGLEVIDQLKDLKTPAASVATTSKTQDQE--REDDLTRRLQALR 198
[Close]
BLAST of Charged multivesicular body protein 1a vs. TrEMBL
Match: A0A267FUA7 (Uncharacterized protein (Fragment) OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig015429g9 PE=4 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 1.798e-77
Identity = 125/209 (59.81%), Postives = 164/209 (78.47%), Query Frame = 3 
Query:   45 MFGFNKPNLEETLFQLKFSGKQIDRFAKKAEKDQKIEQGKVKKALLQKNVEGAKIYAENAIRKKNECLNYMRLSSKLDAVSSRIQTAMTMKQVMHGIQNVTKDLEKAMASMDLEKIDRIMSKFESQFEDLDVRTSTIENAMGNAVTLSAPEDQVNSLIKQVAEENGLEIMNDLSDLKLNXXXXXXXXXXXXXXPAREDDLTKRLAALRQ 671
            +FG  +P+L ETLF L+ + KQ+ R A KAEK+Q  EQ KVKKAL Q+NVEGA+IYAENAIRKKNE LNY+R ++++DAV++R+QTA TMK V   I  VTKDLE+AM+SM+LE+++++M KFE  FEDLDVRT T+E++MGNA+TLSAPEDQV+SLI+QVA+ENGLE+ + L+ L+   G+    + +   E  RED L KRLA LRQ
Sbjct:    2 LFG-KEPDLTETLFNLRMTNKQLSRLAAKAEKEQAKEQAKVKKALQQRNVEGARIYAENAIRKKNESLNYLRFAARIDAVAARVQTAQTMKGVTKNIGQVTKDLERAMSSMNLEEVEKVMGKFEKTFEDLDVRTQTVESSMGNAMTLSAPEDQVSSLIQQVADENGLEVADQLAGLEPAAGATPGAASAQSEERKREDALNKRLAQLRQ 209
[Close]
BLAST of Charged multivesicular body protein 1a vs. TrEMBL
Match: A0A1I8JDK6 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 5.032e-77
Identity = 125/209 (59.81%), Postives = 164/209 (78.47%), Query Frame = 3 
Query:   45 MFGFNKPNLEETLFQLKFSGKQIDRFAKKAEKDQKIEQGKVKKALLQKNVEGAKIYAENAIRKKNECLNYMRLSSKLDAVSSRIQTAMTMKQVMHGIQNVTKDLEKAMASMDLEKIDRIMSKFESQFEDLDVRTSTIENAMGNAVTLSAPEDQVNSLIKQVAEENGLEIMNDLSDLKLNXXXXXXXXXXXXXXPAREDDLTKRLAALRQ 671
            +FG  +P+L ETLF L+ + KQ+ R A KAEK+Q  EQ KVKKAL Q+NVEGA+IYAENAIRKKNE LNY+R ++++DAV++R+QTA TMK V   I  VTKDLE+AM+SM+LE+++++M KFE  FEDLDVRT T+E++MGNA+TLSAPEDQV+SLI+QVA+ENGLE+ + L+ L+   G+    + +   E  RED L KRLA LRQ
Sbjct:   17 LFG-KEPDLTETLFNLRMTNKQLSRLAAKAEKEQAKEQAKVKKALQQRNVEGARIYAENAIRKKNESLNYLRFAARIDAVAARVQTAQTMKGVTKNIGQVTKDLERAMSSMNLEEVEKVMGKFEKTFEDLDVRTQTVESSMGNAMTLSAPEDQVSSLIQQVADENGLEVADQLAGLEPAAGATPGAASAQSEERKREDALNKRLAQLRQ 224
[Close]
BLAST of Charged multivesicular body protein 1a vs. Ensembl Cavefish
Match: chmp1a (charged multivesicular body protein 1A [Source:NCBI gene;Acc:393535])

HSP 1 Score: 216.083 bits (549), Expect = 6.662e-69
Identity = 112/208 (53.85%), Postives = 158/208 (75.96%), Query Frame = 3 
Query:   45 MFGFNKPNLEETLFQLKFSGKQIDRFAKKAEKDQKIEQGKVKKALLQKNVEGAKIYAENAIRKKNECLNYMRLSSKLDAVSSRIQTAMTMKQVMHGIQNVTKDLEKAMASMDLEKIDRIMSKFESQFEDLDVRTSTIENAMGNAVTLSAPEDQVNSLIKQVAEENGLEIMNDLSDLKLNXXXXXXXXXXXXXXPAREDDLTKRLAALR 668
            MF F      +TLFQLKF+ KQ++R AKKAEKD K EQ KVKKAL QKNV+ A++YAENAIRKKNE +N++R++S++DAV+S++QTA+TMK V   +  VTK L+KA+ SMDL+K+  +M KFE+Q ++LDV TS +E++M +A TL+ P++QV+ LI Q+AEE+GLE+M+ L++L     S+   S  S+    +ED L++RLAALR
Sbjct:    1 MFIFT-----DTLFQLKFTSKQLERLAKKAEKDSKAEQAKVKKALQQKNVDCARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMTQVTKALDKALNSMDLQKVSAVMDKFETQVQNLDVHTSVMEDSMSSATTLTTPQEQVDDLILQIAEESGLEVMDQLNELPAGSTSLGESSARSQE---KEDQLSRRLAALR 200
[Close]
BLAST of Charged multivesicular body protein 1a vs. Ensembl Cavefish
Match: ENSAMXT00000038080.1 (charged multivesicular body protein 1b [Source:NCBI gene;Acc:103041461])

HSP 1 Score: 149.058 bits (375), Expect = 6.364e-43
Identity = 90/201 (44.78%), Postives = 144/201 (71.64%), Query Frame = 3 
Query:   66 NLEETLFQLKFSGKQIDRFAKKAEKDQKIEQGKVKKALLQKNVEGAKIYAENAIRKKNECLNYMRLSSKLDAVSSRIQTAMTMKQVMHGIQNVTKDLEKAMASMDLEKIDRIMSKFESQFEDLDVRTSTIENAMGNAVTLSAPEDQVNSLIKQVAEENGLEIMNDLSDLKLNXXXXXXXXXXXXXXPAREDDLTKRLAALR 668
            ++E+ LF LKF+ K+++R AKK +K++K E+ KVKKA+ + N E A+I+AENAIR+KN+ +N++R+S+++DAV++R+QTA+T  +V   +  V K ++  + SM+LEKI  +M KFESQFE LDV+T+ +E+ MGN  TL+ P+++V SL+ ++A+E GL       DL +      +GS S+    A +D+L++RLA LR
Sbjct:    3 SMEKHLFNLKFAAKELERNAKKCDKEEKAEKAKVKKAIQKGNTEVARIHAENAIRQKNQSINFLRMSARVDAVAARVQTAVTTNKVTKSMGGVVKSMDATLKSMNLEKISALMDKFESQFETLDVQTAQMEDTMGNTTTLTTPQNEVESLMHEMADEAGL-------DLNMELPQEQTGSISTSVASAEQDELSQRLARLR 196
[Close]
BLAST of Charged multivesicular body protein 1a vs. Ensembl Cavefish
Match: chmp1b (charged multivesicular body protein 1b [Source:NCBI gene;Acc:103027543])

HSP 1 Score: 142.51 bits (358), Expect = 2.079e-40
Identity = 87/202 (43.07%), Postives = 142/202 (70.30%), Query Frame = 3 
Query:   63 PNLEETLFQLKFSGKQIDRFAKKAEKDQKIEQGKVKKALLQKNVEGAKIYAENAIRKKNECLNYMRLSSKLDAVSSRIQTAMTMKQVMHGIQNVTKDLEKAMASMDLEKIDRIMSKFESQFEDLDVRTSTIENAMGNAVTLSAPEDQVNSLIKQVAEENGLEIMNDLSDLKLNXXXXXXXXXXXXXXPAREDDLTKRLAALR 668
            PN+E+ LF LKF+ K++ R +KK +K++K E+ KVKKA+ + N+E A+I+AENAIR+KN+ +N++R+S+++DAV++R+QTA+TM +V   +  V K ++  + SM+LEKI  +M KFE QFE LDV+T  +E+ M +  TL+ P+ QV++L+ ++A+E GLE       L +      +G+ +S      +D+L++RLA LR
Sbjct:    2 PNMEQHLFNLKFAAKELQRSSKKCDKEEKAEKAKVKKAIQKGNMEVARIHAENAIRQKNQSVNFLRMSARVDAVAARVQTAVTMNKVTKSMAGVVKGMDATLKSMNLEKISSLMDKFERQFETLDVQTQQMEDTMSSTTTLTTPQSQVDNLMHEMADEAGLE-------LNMELPQGQTGTVASSVASTEQDELSQRLAKLR 196
[Close]
BLAST of Charged multivesicular body protein 1a vs. Ensembl Cavefish
Match: chmp1b (charged multivesicular body protein 1b [Source:NCBI gene;Acc:103027543])

HSP 1 Score: 138.658 bits (348), Expect = 7.330e-39
Identity = 77/163 (47.24%), Postives = 125/163 (76.69%), Query Frame = 3 
Query:   63 PNLEETLFQLKFSGKQIDRFAKKAEKDQKIEQGKVKKALLQKNVEGAKIYAENAIRKKNECLNYMRLSSKLDAVSSRIQTAMTMKQVMHGIQNVTKDLEKAMASMDLEKIDRIMSKFESQFEDLDVRTSTIENAMGNAVTLSAPEDQVNSLIKQVAEENGLEI 551
            PN+E+ LF LKF+ K++ R +KK +K++K E+ KVKKA+ + N+E A+I+AENAIR+KN+ +N++R+S+++DAV++R+QTA+TM +V   +  V K ++  + SM+LEKI  +M KFE QFE LDV+T  +E+ M +  TL+ P+ QV++L+ ++A+E GLE+
Sbjct:    2 PNMEQHLFNLKFAAKELQRSSKKCDKEEKAEKAKVKKAIQKGNMEVARIHAENAIRQKNQSVNFLRMSARVDAVAARVQTAVTMNKVTKSMAGVVKGMDATLKSMNLEKISSLMDKFERQFETLDVQTQQMEDTMSSTTTLTTPQSQVDNLMHEMADEAGLEL 164
[Close]
BLAST of Charged multivesicular body protein 1a vs. Ensembl Cavefish
Match: chmp2a (charged multivesicular body protein 2A [Source:NCBI gene;Acc:103027439])

HSP 1 Score: 55.8398 bits (133), Expect = 1.175e-8
Identity = 54/187 (28.88%), Postives = 100/187 (53.48%), Query Frame = 3 
Query:   45 MFGFNKPNLEETLFQ----LKFSGKQIDRFAKKAEKDQKIEQGKVKKALLQKNVEGAKIYAENAIRKKNECLNYMRLSSKLDAVSSRIQTAMT---MKQVMHGIQNVTKDLEKAMASMD----LEKIDRIMSKFESQFEDLDVRTSTIENAMGNAVTLSAPEDQVNSLIKQVAEENGLEIMNDLSDL 572
            +FG  K   EE L Q    L  + + +DR  ++ E+ +K     +KK   Q  ++  KI A++ +R +     ++ + + + AVS +IQT  +   M Q M G+        KAMA+M+    L +I +IM +FE Q E +D++   + +A+ +A+     E++ ++++ QV +E GL + ++LS L
Sbjct:    4 LFGRRK-TPEEMLRQNQRALNRAMRDLDRERQRLEQQEKKIIADIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGV-------TKAMATMNRQLKLPQIQKIMMEFERQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDELGLNLSDELSGL 182
[Close]
BLAST of Charged multivesicular body protein 1a vs. Ensembl Yeast
Match: DID2 (Class E protein of the vacuolar protein-sorting (Vps) pathway; binds Vps4p and directs it to dissociate ESCRT-III complexes; forms a functional and physical complex with Ist1p; human ortholog may be altered in breast tumors [Source:SGD;Acc:S000006435])

HSP 1 Score: 144.436 bits (363), Expect = 4.342e-42
Identity = 85/205 (41.46%), Postives = 136/205 (66.34%), Query Frame = 3 
Query:   69 LEETLFQLKFSGKQIDRFAKKAEKDQKIEQGKVKKALLQKNVEGAKIYAENAIRKKNECLNYMRLSSKLDAVSSRIQTAMTMKQVMHGIQNVTKDLEKAMASMDLEKIDRIMSKFESQFEDLDVRTSTIENAMGNAVTLSAPEDQVNSLIKQVAEENGLEI-----MNDLSDLKLNXXXXXXXXXXXXXXPAREDDLTKRLAALR 668
            LE TLFQLKF+ KQ+ + A KA K++K E  K+K+AL  +N + ++IYA NAIRKKNE L  ++L+S++D+V+SR+QTA+TM+QV   +  V K ++KA+ +M+L++I  IM KFE QFEDLD   +  E+   N+  +    D+V+ L+ +VA+ENG+E+     ++++ ++K         ++    +  +ED L +RL ALR
Sbjct:    9 LENTLFQLKFTSKQLQKQANKASKEEKQETNKLKRAL-NENEDISRIYASNAIRKKNERLQLLKLASRVDSVASRVQTAVTMRQVSASMGQVCKGMDKALQNMNLQQITMIMDKFEQQFEDLDTSVNVYEDMGVNSDAMLVDNDKVDELMSKVADENGMELKQSAKLDNVPEIK---------AKEVNVDDEKEDKLAQRLRALR 203
[Close]
BLAST of Charged multivesicular body protein 1a vs. Ensembl Nematostella
Match: EDO33910 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SQW1])

HSP 1 Score: 210.69 bits (535), Expect = 3.748e-67
Identity = 115/206 (55.83%), Postives = 150/206 (72.82%), Query Frame = 3 
Query:   63 PNLEETLFQLKFSGKQIDRFAKKAEKDQKIEQGKVKKALLQKNVEGAKIYAENAIRKKNECLNYMRLSSKLDAVSSRIQTAMTMKQVM---HGIQNVTKDLEKAMAS-MDLEKIDRIMSKFESQFEDLDVRTSTIENAMGNAVTLSAPEDQVNSLIKQVAEENGLEIMNDLSDLKLNXXXXXXXXXXXXXXPAREDDLTKRLAALR 668
            P++E+TLFQLKFS KQ++RF+KK EK+QK+++ KVKKAL+QKNVEGA+IYAENAIRKKNE LN++RL+S+LDAV+SR+Q+AM MKQVM   +    V  D    + S   L  I   M KFE  FEDLDV T  +E +MG A TL+ P+DQV +LI QVAEENGLE++  L  ++    S+    RS+E    +ED L++RLAALR
Sbjct:    2 PSIEDTLFQLKFSTKQLERFSKKCEKEQKVQESKVKKALMQKNVEGAQIYAENAIRKKNESLNFLRLASRLDAVASRVQSAMMMKQVMVELYAYLGVCSDTYLGVCSNTYLGGISATMEKFEGLFEDLDVNTQVMEGSMGAATTLTTPQDQVEALINQVAEENGLEVIKQLDAVQPGTASLRDSERSTE----KEDQLSRRLAALR 203
[Close]
BLAST of Charged multivesicular body protein 1a vs. Ensembl Nematostella
Match: EDO41077 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S5F7])

HSP 1 Score: 165.236 bits (417), Expect = 1.353e-49
Identity = 101/201 (50.25%), Postives = 149/201 (74.13%), Query Frame = 3 
Query:   69 LEETLFQLKFSGKQIDRFAKKAEKDQKIEQGKVKKALLQKNVEGAKIYAENAIRKKNECLNYMRLSSKLDAVSSRIQTAMTMKQVMHGIQNVTKDLEKAMASMDLEKIDRIMSKFESQFEDLDVRTSTIENAMGNAVTLSAPEDQVNSLIKQVAEENGLEIMNDLSDLKLNXXXXXXXXXXXXXXPAREDDLTKRLAALRQ 671
            +E+ LF LKF+ K ++R AKK EK++K E+ K+KKA+ + N+EGAKI+ ENAIR+KN+ LN+MR+SS++DAV+ R+QTA+TMKQV   +  V K ++ A+ SM+LEK+  +M KFE QFEDLDV+++ ++NAM +  TL+ P+ QV+SL++QVA+E GLE+     +L+L  GS   G  S+    A +D+L+ RLA LRQ
Sbjct:    5 MEKHLFNLKFAAKNLERNAKKCEKEEKAEKLKLKKAIQKGNMEGAKIHGENAIRQKNQSLNFMRMSSRIDAVAQRVQTAVTMKQVTSSMGGVVKSMDAALKSMNLEKVSALMDKFEKQFEDLDVQSAAMDNAMSSTTTLTVPQGQVDSLMQQVADEAGLEL-----NLEL-PGSQQQGIGSASAASAEQDELSSRLAKLRQ 199
[Close]
BLAST of Charged multivesicular body protein 1a vs. Ensembl Nematostella
Match: EDO43581 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RY62])

HSP 1 Score: 54.6842 bits (130), Expect = 1.001e-8
Identity = 52/190 (27.37%), Postives = 98/190 (51.58%), Query Frame = 3 
Query:   45 MFGFNKPNLEETLFQ----LKFSGKQIDRFAKKAEKDQKIEQGKVKKALLQKNVEGAKIYAENAIRKKNECLNYMRLSSKLDAVSSRIQTAMT---MKQVMHGIQNVTKDLEKAMASMD----LEKIDRIMSKFESQFEDLDVRTSTIENAMGNAVTLSAPEDQVNSLIKQVAEENGLEIMNDLSDLKLN 581
            +FG  K   EE L Q    L  + + +DR   K E+ +K     +KK      ++  +I A++ +R +     ++ + + + AVS +IQT  +   M Q M G+        KAMA+M+    L +I +IM +FE Q E +D++   + +A+ + +     +++   L++QV +E GL++ ++LS L + 
Sbjct:    6 LFG-RKKTPEEMLKQNQRALNRAMRDLDRERSKMEQQEKKIINDIKKMAKMGQMDAVRIMAKDLVRTRRYVKKFILMKANIQAVSLKIQTLRSNNAMAQAMKGV-------TKAMATMNRQLKLPEIQKIMMEFEKQSEIMDMKEEMMNDAIDDVIGDEEDDEESEKLVQQVFDELGLQLTDELSGLPVT 187
[Close]
BLAST of Charged multivesicular body protein 1a vs. Ensembl Medaka
Match: chmp1a (charged multivesicular body protein 1A [Source:NCBI gene;Acc:101169448])

HSP 1 Score: 198.749 bits (504), Expect = 3.238e-62
Identity = 109/200 (54.50%), Postives = 156/200 (78.00%), Query Frame = 3 
Query:   69 LEETLFQLKFSGKQIDRFAKKAEKDQKIEQGKVKKALLQKNVEGAKIYAENAIRKKNECLNYMRLSSKLDAVSSRIQTAMTMKQVMHGIQNVTKDLEKAMASMDLEKIDRIMSKFESQFEDLDVRTSTIENAMGNAVTLSAPEDQVNSLIKQVAEENGLEIMNDLSDLKLNXXXXXXXXXXXXXXPAREDDLTKRLAALR 668
            +E+TLFQL+F+ KQ++R +KKAEK+ + EQ KVKKAL QKNVE A++YAENAIRKKNE LN++R++S++DAV+S++QTA+TMK V   +  VTK L+KA+ SMDL+K+  +M KFE+Q ++LDV TS +E++M +A+TL+ P++QV+ LI Q+AEE GLE+M+ L+ L     S+   S  S+    +ED LT+RLAALR
Sbjct:    1 MEDTLFQLRFTSKQLERLSKKAEKESEKEQAKVKKALQQKNVECARVYAENAIRKKNEGLNWLRMASRVDAVASKVQTAVTMKGVAKNMGQVTKALDKALNSMDLQKVSAVMDKFETQVQNLDVHTSVMEDSMSSAMTLTTPQEQVDDLIHQIAEEGGLEVMDQLNQLPAGASSLGGESTRSQD---KEDLLTRRLAALR 197
[Close]
BLAST of Charged multivesicular body protein 1a vs. Ensembl Medaka
Match: chmp1b (charged multivesicular body protein 1B [Source:NCBI gene;Acc:101162390])

HSP 1 Score: 143.665 bits (361), Expect = 5.547e-41
Identity = 89/200 (44.50%), Postives = 141/200 (70.50%), Query Frame = 3 
Query:   69 LEETLFQLKFSGKQIDRFAKKAEKDQKIEQGKVKKALLQKNVEGAKIYAENAIRKKNECLNYMRLSSKLDAVSSRIQTAMTMKQVMHGIQNVTKDLEKAMASMDLEKIDRIMSKFESQFEDLDVRTSTIENAMGNAVTLSAPEDQVNSLIKQVAEENGLEIMNDLSDLKLNXXXXXXXXXXXXXXPAREDDLTKRLAALR 668
            + E LF LKF+ K++ R AKK +K++K E+ KVKKA+ + N+E A+I+AENAIR+KN+ +N++R+S+++DAV++R+QTA+TM QV   +  V K ++  + SM+LEKI  +M KFE QFE LDV+T+ +E+ M +  TL+ P++QV+SL+ ++A+E GL       DL +      +GS  +    A +D+L++RLA LR
Sbjct:    1 ISENLFNLKFAAKELQRNAKKCDKEEKAEKAKVKKAIQKGNMEVARIHAENAIRQKNQSVNFLRMSARVDAVAARVQTAVTMNQVTKSMAGVVKGMDATLKSMNLEKISALMDKFEHQFETLDVQTAQMEDTMSSTTTLTTPQNQVDSLLHEMADEAGL-------DLNMELPQGQTGSVGTSVASAEQDELSQRLAKLR 193
[Close]
BLAST of Charged multivesicular body protein 1a vs. Ensembl Medaka
Match: chmp2a (charged multivesicular body protein 2A [Source:NCBI gene;Acc:101157403])

HSP 1 Score: 55.0694 bits (131), Expect = 1.901e-8
Identity = 55/187 (29.41%), Postives = 99/187 (52.94%), Query Frame = 3 
Query:   45 MFGFNKPNLEETLFQ----LKFSGKQIDRFAKKAEKDQKIEQGKVKKALLQKNVEGAKIYAENAIRKKNECLNYMRLSSKLDAVSSRIQTAMT---MKQVMHGIQNVTKDLEKAMASMD----LEKIDRIMSKFESQFEDLDVRTSTIENAMGNAVTLSAPEDQVNSLIKQVAEENGLEIMNDLSDL 572
            +FG  K   EE L Q    L  + + +DR   K E+ +K     +KK   Q  ++  KI A++ +R +     ++ + + + AVS +IQT  +   M Q M G+        KAMA+M+    L +I +IM +FE Q E +D++   + +A+ +A+     E++ ++++ QV +E GL + ++LS L
Sbjct:    4 LFGKRKTP-EEMLRQNQRALNRAMRDLDRERMKLEQQEKKIIADIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFIMMKANIQAVSLKIQTLKSNNSMAQAMKGV-------TKAMATMNRQLKLPQIQKIMMEFEKQSELMDMKEEMMNDAIDDAMGDEDDEEESDAIVSQVLDELGLNLSDELSSL 182
[Close]
BLAST of Charged multivesicular body protein 1a vs. Planmine SMEST
Match: SMESG000060068.1 (SMESG000060068.1)

HSP 1 Score: 389.808 bits (1000), Expect = 3.657e-137
Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 3 
Query:   45 MFGFNKPNLEETLFQLKFSGKQIDRFAKKAEKDQKIEQGKVKKALLQKNVEGAKIYAENAIRKKNECLNYMRLSSKLDAVSSRIQTAMTMKQVMHGIQNVTKDLEKAMASMDLEKIDRIMSKFESQFEDLDVRTSTIENAMGNAVTLSAPEDQVNSLIKQVAEENGLEIMNDLSDLKLNXXXXXXXXXXXXXXPAREDDLTKRLAALRQ 671
            MFGFNKPNLEETLFQLKFSGKQIDRFAKKAEKDQKIEQGKVKKALLQKNVEGAKIYAENAIRKKNECLNYMRLSSKLDAVSSRIQTAMTMKQVMHGIQNVTKDLEKAMASMDLEKIDRIMSKFESQFEDLDVRTSTIENAMGNAVTLSAPEDQVNSLIKQVAEENGLEIMNDLSDLKLNEGSVVSGSRSSEREPAREDDLTKRLAALRQ
Sbjct:    1 MFGFNKPNLEETLFQLKFSGKQIDRFAKKAEKDQKIEQGKVKKALLQKNVEGAKIYAENAIRKKNECLNYMRLSSKLDAVSSRIQTAMTMKQVMHGIQNVTKDLEKAMASMDLEKIDRIMSKFESQFEDLDVRTSTIENAMGNAVTLSAPEDQVNSLIKQVAEENGLEIMNDLSDLKLNEGSVVSGSRSSEREPAREDDLTKRLAALRQ 209
[Close]
BLAST of Charged multivesicular body protein 1a vs. Planmine SMEST
Match: SMESG000005024.1 (SMESG000005024.1)

HSP 1 Score: 59.6918 bits (143), Expect = 3.798e-10
Identity = 38/156 (24.36%), Postives = 88/156 (56.41%), Query Frame = 3 
Query:  105 KQIDRFAKKAEKDQKIEQGKVKKALLQKNVEGAKIYAENAIRKKNECLNYMRLSSKLDAVSSRIQTAMTMKQVMHGIQNVTKDLEKAMASMDLEKIDRIMSKFESQFEDLDVRTSTIENAMGNAVTLSAPEDQVNSLIKQVAEENGLEIMNDLSDL 572
            +++DR   + E ++K     +KK   Q  ++  KI A++ +R +N    ++ + + + AVS +IQT  +   +   ++ VT+ +++   SM+L ++ +IM +FE +   ++++   + + + +A+     E++   L+ QV +E G+EI + LS++
Sbjct:   27 RELDRERARLENEEKKVINDIKKMAKQGQMDAVKIMAKDLVRTRNYVKKFILMKANIQAVSLKIQTLRSTNAMAQAMKGVTRTMQRMNKSMNLPQLQKIMMEFERESNIMEMKEEMMTDTIDDALGEEGDEEESEKLVNQVLDELGIEIADTLSNI 182
[Close]
BLAST of Charged multivesicular body protein 1a vs. Planmine SMEST
Match: SMESG000005024.1 (SMESG000005024.1)

HSP 1 Score: 59.3066 bits (142), Expect = 5.208e-10
Identity = 38/156 (24.36%), Postives = 88/156 (56.41%), Query Frame = 3 
Query:  105 KQIDRFAKKAEKDQKIEQGKVKKALLQKNVEGAKIYAENAIRKKNECLNYMRLSSKLDAVSSRIQTAMTMKQVMHGIQNVTKDLEKAMASMDLEKIDRIMSKFESQFEDLDVRTSTIENAMGNAVTLSAPEDQVNSLIKQVAEENGLEIMNDLSDL 572
            +++DR   + E ++K     +KK   Q  ++  KI A++ +R +N    ++ + + + AVS +IQT  +   +   ++ VT+ +++   SM+L ++ +IM +FE +   ++++   + + + +A+     E++   L+ QV +E G+EI + LS++
Sbjct:   14 RELDRERARLENEEKKVINDIKKMAKQGQMDAVKIMAKDLVRTRNYVKKFILMKANIQAVSLKIQTLRSTNAMAQAMKGVTRTMQRMNKSMNLPQLQKIMMEFERESNIMEMKEEMMTDTIDDALGEEGDEEESEKLVNQVLDELGIEIADTLSNI 169
The following BLAST results are available for this feature:
BLAST of Charged multivesicular body protein 1a vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
CHMP1A6.420e-7153.50charged multivesicular body protein 1A [Source:HGN... [more]
CHMP1A2.568e-6350.50charged multivesicular body protein 1A [Source:HGN... [more]
CHMP1A1.982e-4958.91charged multivesicular body protein 1A [Source:HGN... [more]
CHMP1B3.233e-3942.79charged multivesicular body protein 1B [Source:HGN... [more]
CHMP1A1.639e-3447.06charged multivesicular body protein 1A [Source:HGN... [more]
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BLAST of Charged multivesicular body protein 1a vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 2
Match NameE-valueIdentityDescription
did-22.490e-4943.00Doa4-Independent Degradation, homologous to yeast ... [more]
vps-23.749e-821.15Related to yeast Vacuolar Protein Sorting factor ... [more]
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BLAST of Charged multivesicular body protein 1a vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 3
Match NameE-valueIdentityDescription
Chmp17.800e-4544.17gene:FBgn0036805 transcript:FBtr0345383[more]
Chmp17.800e-4544.17gene:FBgn0036805 transcript:FBtr0075092[more]
Vps21.142e-826.28gene:FBgn0039402 transcript:FBtr0084967[more]
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BLAST of Charged multivesicular body protein 1a vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
chmp1a6.319e-7055.50charged multivesicular body protein 1A [Source:NCB... [more]
chmp1b3.172e-3943.28chromatin modifying protein 1B [Source:NCBI gene;A... [more]
chmp1b3.172e-3943.28chromatin modifying protein 1B [Source:NCBI gene;A... [more]
chmp1a8.795e-3447.06charged multivesicular body protein 1A [Source:NCB... [more]
chmp2a7.681e-928.88charged multivesicular body protein 2A [Source:NCB... [more]
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BLAST of Charged multivesicular body protein 1a vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
scube21.483e-6853.50signal peptide, CUB domain, EGF-like 2 [Source:Xen... [more]
scube21.735e-5353.99signal peptide, CUB domain, EGF-like 2 [Source:Xen... [more]
chmp1b9.860e-3843.28charged multivesicular body protein 1B [Source:NCB... [more]
chmp1b1.268e-3547.53charged multivesicular body protein 1B [Source:NCB... [more]
nelfa4.240e-929.41negative elongation factor complex member A [Sourc... [more]
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BLAST of Charged multivesicular body protein 1a vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Chmp1a5.745e-6952.50charged multivesicular body protein 1A [Source:MGI... [more]
Chmp1b3.423e-3942.79charged multivesicular body protein 1B [Source:MGI... [more]
2610002M06Rik5.169e-3942.79RIKEN cDNA 2610002M06 gene [Source:MGI Symbol;Acc:... [more]
Chmp2a8.733e-926.67charged multivesicular body protein 2A [Source:MGI... [more]
Chmp2a8.733e-926.67charged multivesicular body protein 2A [Source:MGI... [more]
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BLAST of Charged multivesicular body protein 1a vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q5R605|CHM1A_PONAB3.083e-7053.50Charged multivesicular body protein 1a OS=Pongo ab... [more]
sp|Q9HD42|CHM1A_HUMAN3.083e-7053.50Charged multivesicular body protein 1a OS=Homo sap... [more]
sp|Q6PHF0|CHM1A_DANRE5.859e-6955.00Charged multivesicular body protein 1a OS=Danio re... [more]
sp|Q921W0|CHM1A_MOUSE4.019e-6852.50Charged multivesicular body protein 1a OS=Mus musc... [more]
sp|Q6NUD8|CHM1A_XENLA9.652e-6853.00Charged multivesicular body protein 1a OS=Xenopus ... [more]
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BLAST of Charged multivesicular body protein 1a vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
V4A9012.388e-8062.19Uncharacterized protein OS=Lottia gigantea OX=2251... [more]
A0A3S0ZS032.418e-7862.00Uncharacterized protein OS=Elysia chlorotica OX=18... [more]
A0A2T7NIB63.986e-7863.00Uncharacterized protein OS=Pomacea canaliculata OX... [more]
A0A267FUA71.798e-7759.81Uncharacterized protein (Fragment) OS=Macrostomum ... [more]
A0A1I8JDK65.032e-7759.81Uncharacterized protein OS=Macrostomum lignano OX=... [more]
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BLAST of Charged multivesicular body protein 1a vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
chmp1a6.662e-6953.85charged multivesicular body protein 1A [Source:NCB... [more]
ENSAMXT00000038080.16.364e-4344.78charged multivesicular body protein 1b [Source:NCB... [more]
chmp1b2.079e-4043.07charged multivesicular body protein 1b [Source:NCB... [more]
chmp1b7.330e-3947.24charged multivesicular body protein 1b [Source:NCB... [more]
chmp2a1.175e-828.88charged multivesicular body protein 2A [Source:NCB... [more]
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BLAST of Charged multivesicular body protein 1a vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Charged multivesicular body protein 1a vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1
Match NameE-valueIdentityDescription
DID24.342e-4241.46Class E protein of the vacuolar protein-sorting (V... [more]
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BLAST of Charged multivesicular body protein 1a vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 3
Match NameE-valueIdentityDescription
EDO339103.748e-6755.83Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO410771.353e-4950.25Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO435811.001e-827.37Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of Charged multivesicular body protein 1a vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 3
Match NameE-valueIdentityDescription
chmp1a3.238e-6254.50charged multivesicular body protein 1A [Source:NCB... [more]
chmp1b5.547e-4144.50charged multivesicular body protein 1B [Source:NCB... [more]
chmp2a1.901e-829.41charged multivesicular body protein 2A [Source:NCB... [more]
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BLAST of Charged multivesicular body protein 1a vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3
Match NameE-valueIdentityDescription
SMESG000060068.13.657e-137100.00SMESG000060068.1[more]
SMESG000005024.13.798e-1024.36SMESG000005024.1[more]
SMESG000005024.15.208e-1024.36SMESG000005024.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30031427 ID=SMED30031427|Name=Charged multivesicular body protein 1a|organism=Schmidtea mediterranea sexual|type=transcript|length=1127bp
CTAAATCACATATTTTTCAGGAAAAACTATTGAATTTTTAACAAATGTTT
GGATTTAATAAGCCAAATTTAGAAGAAACTCTTTTTCAATTAAAATTTTC
AGGTAAACAAATCGATAGATTTGCCAAGAAAGCAGAAAAAGACCAGAAAA
TAGAACAAGGAAAAGTTAAGAAAGCTTTATTACAAAAAAATGTTGAAGGT
GCGAAAATTTATGCAGAAAATGCAATAAGAAAGAAAAACGAATGTTTAAA
TTATATGAGATTATCATCAAAATTAGATGCAGTTTCATCTCGAATTCAAA
CTGCGATGACTATGAAACAGGTGATGCACGGCATTCAGAATGTCACGAAG
GATCTAGAAAAGGCGATGGCATCGATGGATTTGGAAAAAATTGATCGCAT
AATGTCTAAATTCGAGAGCCAATTTGAAGATTTAGACGTACGCACGTCAA
CAATAGAAAACGCGATGGGAAATGCGGTGACATTGTCTGCTCCTGAGGAT
CAGGTCAATTCATTGATCAAACAGGTCGCAGAAGAGAATGGCTTGGAAAT
TATGAATGACCTTTCAGATTTGAAGTTGAACGAAGGATCGGTTGTGTCGG
GATCTCGTAGCTCAGAAAGAGAGCCCGCTAGAGAAGATGACTTAACAAAG
AGGCTTGCAGCTTTGCGGCAGTAAATATTATCAGGTTTTTCATGGACAAC
TCAGATCACTTTATAATATGAAATTTAATCAAATACATTTTCGGTTTTAT
AATTTTCGATCGATTAATTGGAATAATTATTGACTATAAATATATATATG
ATTCTATGATTCGTCCCGTAGTTGAGAAGGTTTACTTCCCGGAAAATATC
GAGTTAGATTCCTGCATCCAGAAGATAAATATTAATGATATTTGGGTGCA
TAAAGTGCTCTGGGTTCTGCTGATTTTGTTGATCGTTTCCGTCATCATCG
CCATGTCGATTGTGTCGGCGATGGAGTTCTTCAAGATCTATCTCGAAACC
CAGGAGCAAAATGAGGATCTGGCAGATCAAATAATTCAAAAATCAATCAT
TAAAGTTATTCAGAAAGCCGCCGAAGTGTCAGAAGAATTTGAATAGATTC
GTTTGATTCGTTTTATGGGAATTTAAC
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protein sequence of SMED30031427-orf-1

>SMED30031427-orf-1 ID=SMED30031427-orf-1|Name=SMED30031427-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=210bp
MFGFNKPNLEETLFQLKFSGKQIDRFAKKAEKDQKIEQGKVKKALLQKNV
EGAKIYAENAIRKKNECLNYMRLSSKLDAVSSRIQTAMTMKQVMHGIQNV
TKDLEKAMASMDLEKIDRIMSKFESQFEDLDVRTSTIENAMGNAVTLSAP
EDQVNSLIKQVAEENGLEIMNDLSDLKLNEGSVVSGSRSSEREPAREDDL
TKRLAALRQ*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000026gut
PLANA:0000034epidermis
PLANA:0000070intestinal phagocyte
PLANA:0000101muscle cell
PLANA:0002056medial muscle cell
PLANA:0003001lateral region of the whole animal
Vocabulary: INTERPRO
TermDefinition
IPR029888CHMP1A
IPR005024Snf7_fam
Vocabulary: biological process
TermDefinition
GO:0007034vacuolar transport
GO:0007076mitotic chromosome condensation
GO:0016192vesicle-mediated transport
Vocabulary: cellular component
TermDefinition
GO:0000815ESCRT III complex
GO:0016363nuclear matrix
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005024Snf7 familyPFAMPF03357Snf7coord: 15..175
e-value: 1.1E-14
score: 54.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 181..209
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 190..209
NoneNo IPR availablePANTHERPTHR10476CHARGED MULTIVESICULAR BODY PROTEINcoord: 9..208
IPR029888Charged multivesicular body protein 1aPANTHERPTHR10476:SF17CHARGED MULTIVESICULAR BODY PROTEIN 1Acoord: 9..208