SMED30031352

Overview
NameSMED30031352
Smed IDSMED30031352
Length (bp)3576
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30031352 (SMED30031352) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30031352 (SMED30031352) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30031352 (SMED30031352) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30031352 (SMED30031352) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30031352

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 6

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
epidermisSMED30031352SMESG000006235.1 dd_Smed_v4_6275_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30031352SMESG000006235.1 dd_Smed_v4_6275_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30031352SMESG000006235.1 Contig43467newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30031352SMESG000006235.1 Contig43467uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Category 3 cellSMED30031352SMESG000006235.1 dd_Smed_v6_6275_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30031352SMESG000006235.1 dd_Smed_v4_6275_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30031352 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.000224:34786..47916 -17444
Homology
[Close]
BLAST of SMED30031352 vs. Planmine SMEST
Match: SMESG000006235.1 (SMESG000006235.1)

HSP 1 Score: 1970.28 bits (5103), Expect = 0.000e+0
Identity = 1085/1088 (99.72%), Postives = 1086/1088 (99.82%), Query Frame = 1 
Query:   49 MSHIPEQINKINKNIVEAESILLDLKRRPKTENVAEQIEHFESMLNKLNSLKESYMQLSTQFEAANDLKRSLSASPGNQIANSDIANIEISNGVSNISSPNLLNIRNMLSSVDELEQLKQERDRLKRLLQERGLNVDIGSYQPNATSSLEIDVRNEMRLSQQSPPNIVDLDDAGFDQNSKSQVELSFYISILNHHIDIGSKMVNMVEGLALNTNVQQGINLLKDVMQRLIELQERFQCVQNARESIENEGSLVPEIEPFSTISDDLKINFATGVKCFKSAMDIIQACLDPNLTQPDSNDVGTNEEENDLRLRDNGFRSLTNEISNSRNELNVSYSGDFTSAENKAKXXXXXXXXEGNLQEDEDDVNNDAEYEESIDSCHEKDQDESMEIGVITSSADPTENHDTMHQLRIQTEIEQKEILRLLEEKRIMQQKLADLKKAKERAQNQMMNLVQNGNMYDDFSGFLRICPETERTXXXXXXXVVQRPESLDLNTGNMVNDMGSLLKLLSDIKVDINNEAPQHLXXXXXXXXXXKNGKDSNNAPLRSAFNSESPNHMRQYVNPNALVMPDMSTKNXXXXXXXXXXXXXXXRIHQLQDILNRIKKDSINLDDSIINESNDQYLEDQNNDREISNNCRPAKGRDSVTFQEPVATFIANDELYXXXXXXXXXXXXXXDLSARNSNSDPRSPAGRVIDSGNAPGAPPEVPTRIPVTNHDTASQDRTTAATWXXXXXXXDDYEESAPNGNIQNENIRIRNSGNRVSTLSNVNDEGSRVAPIGQSSTFRTKTKDSSYIRNVIDTDFANLKSQIENIATMCRSMALEQNRLARDISDMKRGSSPRINNNGPELGINSSSSANVSKHTSHAPNLLTDDNLQNWASPINSGVPLTNISSSVRNGNCLTTADSTLNFGSGMRPVVQMDSNWDDASVTSSNAIQLNKQTGFXXXXXXXXXXXXXXXXMLLQSHSMFMRLQMSLIASQLEQQRLMCNVSIQQNGCLYPQYPVWPMRSIIXXXXXXXXXXXVSNWNMLQPNSDVTGSQHPNFNDPEYILYSSNYPPDSREXXXXXXXXXXXXXXXXXWKNGSSSRNNMHRNYME 3312
            MSHIPEQINKINKNIVEAESILLDLKRRPKTENVAEQIEHFESMLNKLNSLKESYMQLSTQFEAANDLKRSLSASPGNQIANSDIANIEISNGV+NISSPNLLNIRNMLSSVDELEQLKQERDRLKRLLQERGLNVDIGSYQPNATSSLEIDVRNEMRLSQQSPPNIVDLDDAGFDQNSKSQVELSFYISILNHHIDIGSKMVNMVEGLALNTNVQQGINLLKDVMQRLIELQERFQCVQNARESIENEGSLVPEIEPFSTISDDLKINFATGVKCFKSAMDIIQACLDPNLTQPDSNDVGTNEEENDLRLRDNGFRSLTNEISNSRNELNVSYSGDFT AENKAKNDNSDSSSEGNLQEDEDDVNNDAEYEESIDSCHEKDQDESMEIGVITSSADPTENHDTMHQLRIQTEIEQKEILRLLEEKRIMQQKLADLKKAKERAQNQMMNLVQNGNMYDDFSGFLRICPETERTNSNSNSSVVQRPESLDLNTGNMVNDMGSLLKLLSDIKVDINNEAPQHLSSRSTNSSCSKNGKDSNNAPLRSAFNSESPNHMRQYVNPNALVMPDMSTKNEELQQQTEILQQSQSRIHQLQDILNRIKKDSINLDDSIINESNDQYLEDQNNDREISNNCRPAKGRDSVTFQEPVATFIANDELYENMREVRMRREELRDLSARNSNSDPRSPAGRVIDSGNAPGAPPEVPTRIPVTNHDTASQDRTTAATWGSSSGGGDDYEESAPNGNIQNENIRIRNSGNRVSTLSNVNDEGSRVAPIGQSSTFRTKTKDSSYIRNVIDTDFANLKSQIENIATMCRSMALEQNRLARDISDMKRGSSPRINNNGPELGINSSSSANVSKH SHAPNLLTDDNLQNWASPINSGVPLTNISSSVRNGNCLTTADSTLNFGSGMRPVVQMDSNWDDASVTSSNAIQLNKQTGFYYPPNNNYQNIVNQQNMLLQSHSMFMRLQMSLIASQLEQQRLMCNVSIQQNGCLYPQYPVWPMRSIIPPFYPPPGPLPVSNWNMLQPNSDVTGSQHPNFNDPEYILYSSNYPPDSRETVNTSNPNTTSNMNVNSWKNGSSSRNNMHRNYME
Sbjct:    1 MSHIPEQINKINKNIVEAESILLDLKRRPKTENVAEQIEHFESMLNKLNSLKESYMQLSTQFEAANDLKRSLSASPGNQIANSDIANIEISNGVTNISSPNLLNIRNMLSSVDELEQLKQERDRLKRLLQERGLNVDIGSYQPNATSSLEIDVRNEMRLSQQSPPNIVDLDDAGFDQNSKSQVELSFYISILNHHIDIGSKMVNMVEGLALNTNVQQGINLLKDVMQRLIELQERFQCVQNARESIENEGSLVPEIEPFSTISDDLKINFATGVKCFKSAMDIIQACLDPNLTQPDSNDVGTNEEENDLRLRDNGFRSLTNEISNSRNELNVSYSGDFTPAENKAKNDNSDSSSEGNLQEDEDDVNNDAEYEESIDSCHEKDQDESMEIGVITSSADPTENHDTMHQLRIQTEIEQKEILRLLEEKRIMQQKLADLKKAKERAQNQMMNLVQNGNMYDDFSGFLRICPETERTNSNSNSSVVQRPESLDLNTGNMVNDMGSLLKLLSDIKVDINNEAPQHLSSRSTNSSCSKNGKDSNNAPLRSAFNSESPNHMRQYVNPNALVMPDMSTKNEELQQQTEILQQSQSRIHQLQDILNRIKKDSINLDDSIINESNDQYLEDQNNDREISNNCRPAKGRDSVTFQEPVATFIANDELYENMREVRMRREELRDLSARNSNSDPRSPAGRVIDSGNAPGAPPEVPTRIPVTNHDTASQDRTTAATWGSSSGGGDDYEESAPNGNIQNENIRIRNSGNRVSTLSNVNDEGSRVAPIGQSSTFRTKTKDSSYIRNVIDTDFANLKSQIENIATMCRSMALEQNRLARDISDMKRGSSPRINNNGPELGINSSSSANVSKHPSHAPNLLTDDNLQNWASPINSGVPLTNISSSVRNGNCLTTADSTLNFGSGMRPVVQMDSNWDDASVTSSNAIQLNKQTGFYYPPNNNYQNIVNQQNMLLQSHSMFMRLQMSLIASQLEQQRLMCNVSIQQNGCLYPQYPVWPMRSIIPPFYPPPGPLPVSNWNMLQPNSDVTGSQHPNFNDPEYILYSSNYPPDSRETVNTSNPNTTSNMNVNSWKNGSSSRNNMHRNYME 1088
The following BLAST results are available for this feature:
BLAST of SMED30031352 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031352 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031352 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031352 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031352 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031352 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031352 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031352 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031352 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031352 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031352 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031352 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031352 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031352 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000006235.10.000e+099.72SMESG000006235.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30031352 ID=SMED30031352|Name=SMED30031352|organism=Schmidtea mediterranea sexual|type=transcript|length=3576bp
AACAATTTTAATTATTTTTAGCTACTCATATTTTGTTATTGTGGCATAAT
GTCTCATATACCAGAGCAAATTAATAAAATTAATAAAAATATCGTCGAAG
CTGAATCAATTTTATTGGATTTAAAAAGACGTCCTAAAACTGAAAATGTT
GCTGAACAAATAGAGCATTTTGAGTCTATGCTCAACAAATTAAATTCGTT
AAAAGAAAGCTATATGCAGCTTTCTACTCAATTTGAAGCCGCTAACGACT
TAAAGAGATCTTTAAGCGCTTCACCTGGAAACCAAATTGCTAATTCAGAT
ATCGCAAATATTGAAATCTCAAATGGTGTATCCAATATTTCTTCACCGAA
CTTATTAAATATCAGAAATATGCTCTCATCTGTTGATGAATTAGAGCAAC
TAAAACAAGAAAGAGATAGATTAAAACGATTACTTCAGGAAAGAGGGTTA
AATGTAGACATTGGATCTTATCAGCCTAATGCTACATCAAGTCTCGAAAT
TGATGTAAGAAACGAAATGAGACTTTCCCAACAAAGTCCACCGAATATTG
TAGATTTAGATGATGCCGGATTTGATCAAAATTCAAAGTCTCAAGTAGAA
CTATCTTTTTATATATCAATATTAAATCATCATATTGACATTGGCTCAAA
AATGGTTAATATGGTTGAGGGTCTAGCTTTAAACACAAATGTTCAGCAGG
GTATAAATCTCTTGAAAGATGTCATGCAAAGATTAATTGAACTACAAGAG
AGATTTCAGTGCGTACAGAATGCTAGAGAAAGTATTGAAAACGAAGGCAG
TCTAGTTCCTGAGATTGAACCGTTTTCCACAATCTCTGATGACTTGAAAA
TCAATTTTGCAACTGGTGTTAAATGCTTCAAATCTGCCATGGACATCATT
CAAGCATGCTTAGATCCAAATTTAACACAACCCGATTCTAATGATGTTGG
AACAAATGAGGAGGAAAATGATTTGAGATTACGGGATAATGGATTTAGGT
CATTGACAAATGAAATTAGCAATTCAAGAAACGAATTAAATGTATCGTAT
TCTGGTGACTTTACTTCGGCTGAAAACAAAGCAAAAAATGATAATAGCGA
CTCAAGCAGTGAAGGTAACCTTCAAGAGGATGAGGATGATGTGAACAATG
ATGCTGAATATGAAGAGAGTATTGACAGTTGTCATGAGAAAGATCAAGAT
GAATCTATGGAAATTGGAGTTATAACGAGTTCCGCAGATCCTACAGAAAA
CCATGATACTATGCATCAGTTGAGAATTCAAACCGAAATAGAACAGAAAG
AGATTTTGAGACTTTTGGAAGAAAAGCGAATAATGCAACAAAAATTGGCA
GATTTGAAAAAGGCAAAAGAAAGAGCCCAGAATCAAATGATGAATCTTGT
TCAAAACGGAAACATGTACGATGATTTTTCTGGATTTTTAAGAATTTGTC
CAGAAACAGAAAGGACTAATTCCAATAGTAATTCATCTGTTGTTCAACGA
CCTGAATCGTTAGATTTAAATACCGGCAATATGGTAAATGATATGGGATC
ACTTCTAAAGCTTTTGTCTGATATAAAAGTAGATATTAATAATGAGGCCC
CTCAACATTTGTCTAGCAGATCAACGAATTCTAGTTGCTCCAAAAACGGA
AAAGATTCAAATAATGCGCCTCTGAGATCAGCTTTTAACAGTGAATCACC
AAACCATATGAGACAATATGTCAATCCAAATGCTTTGGTAATGCCGGATA
TGTCTACCAAGAATGAAGAACTTCAACAGCAAACGGAAATCCTACAGCAA
TCACAATCTCGCATTCACCAGTTGCAAGATATTCTCAATCGAATTAAGAA
AGACTCAATCAATCTCGACGATTCTATTATCAATGAATCTAATGATCAAT
ATTTGGAAGATCAAAATAATGATCGGGAAATATCAAATAACTGTCGGCCA
GCTAAAGGTCGGGATTCTGTGACGTTTCAGGAGCCGGTTGCTACGTTTAT
TGCCAACGATGAACTCTACGAAAATATGAGAGAAGTTCGAATGAGACGAG
AAGAATTAAGGGATCTCAGTGCTAGAAATTCGAATTCCGATCCACGATCC
CCAGCTGGAAGAGTTATTGACAGTGGAAATGCTCCTGGAGCACCACCGGA
AGTTCCAACGAGAATTCCTGTAACAAATCACGATACAGCAAGCCAGGATC
GTACAACGGCGGCTACCTGGGGATCATCATCTGGAGGCGGAGATGATTAT
GAGGAATCGGCACCCAACGGTAACATTCAGAATGAAAATATCCGAATCAG
AAACTCAGGAAACCGAGTATCCACCTTGTCAAATGTTAATGACGAAGGCA
GCCGTGTCGCGCCAATTGGCCAATCATCAACATTTCGCACTAAAACCAAA
GATTCATCATATATTAGAAATGTTATCGATACAGATTTTGCCAACTTGAA
ATCCCAAATCGAAAATATTGCTACGATGTGCAGAAGTATGGCTCTGGAAC
AAAATCGATTGGCTCGTGATATTTCCGACATGAAACGAGGATCTTCTCCT
AGAATCAACAACAATGGACCAGAATTAGGAATCAATTCTTCTTCTTCGGC
TAATGTCTCCAAGCATACTTCGCATGCGCCGAATCTGTTGACCGATGACA
ATTTGCAAAATTGGGCATCCCCGATCAATAGTGGAGTACCTCTTACCAAT
ATTAGTTCTTCAGTCAGGAATGGCAACTGTTTAACGACAGCTGATTCGAC
ACTGAATTTCGGCAGTGGCATGCGTCCTGTTGTTCAAATGGATTCTAATT
GGGACGATGCTTCCGTTACTTCATCAAATGCTATCCAATTAAACAAGCAG
ACTGGGTTCTATTATCCGCCAAATAATAATTATCAGAACATTGTGAACCA
GCAAAACATGTTATTGCAGAGTCATTCAATGTTTATGAGATTGCAAATGT
CGTTGATTGCATCACAATTAGAACAACAACGCTTAATGTGCAATGTATCT
ATTCAACAAAATGGTTGTCTTTATCCTCAGTATCCCGTTTGGCCAATGAG
AAGTATAATTCCTCCTTTTTATCCTCCCCCCGGTCCATTGCCAGTATCTA
ATTGGAATATGCTACAACCTAATTCAGATGTCACTGGATCTCAGCATCCA
AATTTCAATGATCCTGAGTATATTCTATATTCATCTAATTATCCACCAGA
TTCTCGAGAAACTGTGAACACATCGAATCCTAATACAACATCTAATATGA
ATGTCAATTCATGGAAAAACGGGTCTTCAAGTAGAAATAATATGCATAGA
AATTACATGGAATAATGTTATCATCCGATCTTGTGAATGAGTTAAGCATT
TCACAATTGTTTTTATTTATCCTTTTTACTGTTGCTTATCATAAACTAAT
AAATTTTGTTCATTGCTATTTGTATTTAAAATAAGTAAGACGTTTGAGTT
ATGTTATCTGATACATGGGATTTAAATTCGATTTTTTGTCTGTAAAAATA
ATGTTCATTTATTAATATTTATTATTTTATCTGGAAATAGGCAACCAAAT
TCTATTGCATGGAATTTCCTGTTATT
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protein sequence of SMED30031352-orf-1

>SMED30031352-orf-1 ID=SMED30031352-orf-1|Name=SMED30031352-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1089bp
MSHIPEQINKINKNIVEAESILLDLKRRPKTENVAEQIEHFESMLNKLNS
LKESYMQLSTQFEAANDLKRSLSASPGNQIANSDIANIEISNGVSNISSP
NLLNIRNMLSSVDELEQLKQERDRLKRLLQERGLNVDIGSYQPNATSSLE
IDVRNEMRLSQQSPPNIVDLDDAGFDQNSKSQVELSFYISILNHHIDIGS
KMVNMVEGLALNTNVQQGINLLKDVMQRLIELQERFQCVQNARESIENEG
SLVPEIEPFSTISDDLKINFATGVKCFKSAMDIIQACLDPNLTQPDSNDV
GTNEEENDLRLRDNGFRSLTNEISNSRNELNVSYSGDFTSAENKAKNDNS
DSSSEGNLQEDEDDVNNDAEYEESIDSCHEKDQDESMEIGVITSSADPTE
NHDTMHQLRIQTEIEQKEILRLLEEKRIMQQKLADLKKAKERAQNQMMNL
VQNGNMYDDFSGFLRICPETERTNSNSNSSVVQRPESLDLNTGNMVNDMG
SLLKLLSDIKVDINNEAPQHLSSRSTNSSCSKNGKDSNNAPLRSAFNSES
PNHMRQYVNPNALVMPDMSTKNEELQQQTEILQQSQSRIHQLQDILNRIK
KDSINLDDSIINESNDQYLEDQNNDREISNNCRPAKGRDSVTFQEPVATF
IANDELYENMREVRMRREELRDLSARNSNSDPRSPAGRVIDSGNAPGAPP
EVPTRIPVTNHDTASQDRTTAATWGSSSGGGDDYEESAPNGNIQNENIRI
RNSGNRVSTLSNVNDEGSRVAPIGQSSTFRTKTKDSSYIRNVIDTDFANL
KSQIENIATMCRSMALEQNRLARDISDMKRGSSPRINNNGPELGINSSSS
ANVSKHTSHAPNLLTDDNLQNWASPINSGVPLTNISSSVRNGNCLTTADS
TLNFGSGMRPVVQMDSNWDDASVTSSNAIQLNKQTGFYYPPNNNYQNIVN
QQNMLLQSHSMFMRLQMSLIASQLEQQRLMCNVSIQQNGCLYPQYPVWPM
RSIIPPFYPPPGPLPVSNWNMLQPNSDVTGSQHPNFNDPEYILYSSNYPP
DSRETVNTSNPNTTSNMNVNSWKNGSSSRNNMHRNYME*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000034epidermis
PLANA:0000035Category 3 cell
PLANA:0000101muscle cell
PLANA:0002032epidermal cell
PLANA:0003001lateral region of the whole animal
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 653..673
NoneNo IPR availableCOILSCoilCoilcoord: 575..602
NoneNo IPR availableCOILSCoilCoilcoord: 8..28
NoneNo IPR availableCOILSCoilCoilcoord: 222..249
NoneNo IPR availableCOILSCoilCoilcoord: 419..453
NoneNo IPR availableCOILSCoilCoilcoord: 108..135
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 295..314
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 517..539
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 331..365
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 671..732
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 331..354
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 708..727
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1051..1088