Ribosome production factor 1

Overview


Name	Ribosome production factor 1
Smed ID	SMED30031315
Length (bp)	962

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of Ribosome production factor 1 (SMED30031315) t-SNE clustered cells

Violin plots show distribution of expression levels for Ribosome production factor 1 (SMED30031315) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Ribosome production factor 1 (SMED30031315) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Ribosome production factor 1 (SMED30031315) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30031315

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 2

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication	Specimen	Lifecycle	Evidence
X1 cell	SMED30031315	SMESG000035174.1	SmedASXL_006157	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
neoblast	SMED30031315	SMESG000035174.1	dd_Smed_v4_9839_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018

Note: Hover over icons to view figure legend

Homology

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BLAST of Ribosome production factor 1 vs. Ensembl Human
Match: RPF1 (ribosome production factor 1 homolog [Source:HGNC Symbol;Acc:HGNC:30350])

HSP 1 Score: 141.739 bits (356), Expect = 7.809e-39
Identity = 83/242 (34.30%), Postives = 135/242 (55.79%), Query Frame = 1

Query:  175 PKTIESMSTYKTPVVSSDNKEMSEVLEKDELSFIINNNTEPKVLITSSIKGSPRLHGFCIEFASVIPQAEYCNRKNLQVKNIVKQAKDNSFTAVIIIGENDKIIDSMKIYCLPDGPTSNFRLSHAYLRSEHKNTKHFSGLENINPQVCLLNFKTMMGLRLSRIFLSLFPSKNALDAHSHNRNITFKNGRDFIFFRHHRFQIKESGQKDKASMNEVGPRFSLRLESLHKGLFENS-PDFEYIY 897
            PKTI++   Y    V  +++E++     DE +   N  T PK+LIT+S +   R    C + ++VIP +    R+ L +K I+ Q     FT +I+I E+ K  + + +  LP+GPT++F++S   LR E K  +     E+I P++ L NF T +G  + R+F SLFP           +  TF N RD+IFFR HR+  +    + K  + E+GPRF+L+L SL KG F++   ++E+++
Sbjct:  102 PKTIDNQRVYDETTVDPNDEEVAYDEATDEFASYFNKQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKR-RGKDPTEHI-PEIILNNFTTRLGHSIGRMFASLFPHNPQFIG---RQVATFHNQRDYIFFRFHRYIFRS---EKKVGIQELGPRFTLKLRSLQKGTFDSKYGEYEWVH 335

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BLAST of Ribosome production factor 1 vs. Ensembl Human
Match: IMP4 (IMP U3 small nucleolar ribonucleoprotein 4 [Source:HGNC Symbol;Acc:HGNC:30856])

HSP 1 Score: 96.2857 bits (238), Expect = 7.597e-23
Identity = 65/204 (31.86%), Postives = 102/204 (50.00%), Query Frame = 1

Query:  292 EPKVLITSSIKGSPRLHGFCIEFASVIPQAEYCNRKNLQVKNIVKQAKDNSFTAVIIIGENDKIIDSMKIYCLPDGPTSNFRLSHAYLRSEHKNTKHFSGLENINPQVCLLNFKTMMGLRLSRIFLSLFPSKNALDAHSHNRNITFKNGRDFIFFRHHRFQIKESGQKDKASMNEVGPRFSLRLESLHKGLFEN--SPDFEYIY 897
            +PKV+IT+S   S RL  F  E   V P A+  NR   +V  +V+  K N  T ++++ E+      + +  LP GPT+ F L +  +R +  +      +    P +    F + +G R+S I   LFP     D+H   R ITF N  D+I FRHH +  K++  ++   + EVGPRF L+L  +  G  E   + D E+ +
Sbjct:   27 DPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD---LGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKD-DSH---RVITFANQDDYISFRHHVY--KKTDHRN-VELTEVGPRFELKLYMIRLGTLEQEATADVEWRW 220

[Close]

BLAST of Ribosome production factor 1 vs. Ensembl Human
Match: IMP4 (IMP U3 small nucleolar ribonucleoprotein 4 [Source:HGNC Symbol;Acc:HGNC:30856])

HSP 1 Score: 96.6709 bits (239), Expect = 1.782e-22
Identity = 77/270 (28.52%), Postives = 124/270 (45.93%), Query Frame = 1

Query:  100 KAKKE--KSKLQRKARIERKKAGIVLEPKTIESMSTYKTPVVSSDNKEMSEVLEKDELSFIINNNTEPKVLITSSIKGSPRLHGFCIEFASVIPQAEYCNRKNLQVKNIVKQAKDNSFTAVIIIGENDKIIDSMKIYCLPDGPTSNFRLSHAYLRSEHKNTKHFSGLENINPQVCLLNFKTMMGLRLSRIFLSLFPSKNALDAHSHNRNITFKNGRDFIFFRHHRFQIKESGQKDKASMNEVGPRFSLRLESLHKGLFEN--SPDFEYIY 897
            KA++E  +S  +RK R+ R      L P  +   +      +  D+     V    +  +      +PKV+IT+S   S RL  F  E   V P A+  NR   +V  +V+  K N  T ++++ E+      + +  LP GPT+ F L +  +R    +      +    P +    F + +G R+S I   LFP     D+H   R ITF N  D+I FRHH +  K++  ++   + EVGPRF L+L  +  G  E   + D E+ +
Sbjct:   16 KAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSLEFDDAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMR---HDIPDLGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKD-DSH---RVITFANQDDYISFRHHVY--KKTDHRN-VELTEVGPRFELKLYMIRLGTLEQEATADVEWRW 275

[Close]

BLAST of Ribosome production factor 1 vs. Ensembl Human
Match: IMP4 (IMP U3 small nucleolar ribonucleoprotein 4 [Source:HGNC Symbol;Acc:HGNC:30856])

HSP 1 Score: 95.5153 bits (236), Expect = 3.493e-22
Identity = 65/204 (31.86%), Postives = 102/204 (50.00%), Query Frame = 1

Query:  292 EPKVLITSSIKGSPRLHGFCIEFASVIPQAEYCNRKNLQVKNIVKQAKDNSFTAVIIIGENDKIIDSMKIYCLPDGPTSNFRLSHAYLRSEHKNTKHFSGLENINPQVCLLNFKTMMGLRLSRIFLSLFPSKNALDAHSHNRNITFKNGRDFIFFRHHRFQIKESGQKDKASMNEVGPRFSLRLESLHKGLFEN--SPDFEYIY 897
            +PKV+IT+S   S RL  F  E   V P A+  NR   +V  +V+  K N  T ++++ E+      + +  LP GPT+ F L +  +R +  +      +    P +    F + +G R+S I   LFP     D+H   R ITF N  D+I FRHH +  K++  ++   + EVGPRF L+L  +  G  E   + D E+ +
Sbjct:   71 DPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD---LGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKD-DSH---RVITFANQDDYISFRHHVY--KKTDHRN-VELTEVGPRFELKLYMIRLGTLEQEATADVEWRW 264

[Close]

BLAST of Ribosome production factor 1 vs. Ensembl Human
Match: IMP4 (IMP U3 small nucleolar ribonucleoprotein 4 [Source:HGNC Symbol;Acc:HGNC:30856])

HSP 1 Score: 84.3445 bits (207), Expect = 4.652e-19
Identity = 58/180 (32.22%), Postives = 90/180 (50.00%), Query Frame = 1

Query:  304 LITSSIKGSPRLHGFCIEFASVIPQAEYCNRKNLQVKNIVKQAKDNSFTAVIIIGENDKIIDSMKIYCLPDGPTSNFRLSHAYLRSEHKNTKHFSGLENINPQVCLLNFKTMMGLRLSRIFLSLFPSKNALDAHSHNRNITFKNGRDFIFFRHHRFQIKESGQKDKASMNEVGPRFSLRL 843
            +IT+S   S RL  F  E   V P A+  NR   +V  +V+  K N  T ++++ E+      + +  LP GPT+ F L +  +R +  +      +    P +    F + +G R+S I   LFP     D+H   R ITF N  D+I FRHH +  K++  ++   + EVGPRF L+L
Sbjct:    1 MITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD---LGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKD-DSH---RVITFANQDDYISFRHHVY--KKTDHRN-VELTEVGPRFELKL 170

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BLAST of Ribosome production factor 1 vs. Ensembl Celegans
Match: F44G4.1 (Brix domain-containing protein F44G4.1 [Source:UniProtKB/Swiss-Prot;Acc:P54073])

HSP 1 Score: 156.762 bits (395), Expect = 1.366e-44
Identity = 92/246 (37.40%), Postives = 141/246 (57.32%), Query Frame = 1

Query:  175 PKTIESMSTYKTPVVSSDNKEMSEVLEKDELSFIINNNTEPKVLITSSIKGSPRLHGFCIEFASVIPQAEYCNRKNLQVKNIVKQAKDNSFTAVIIIGENDKIIDSMKIYC-LPDGPTSNFRLSHAYLRSEHK----NTKHFSGLENINPQVCLLNFKTMMGLRLSRIFLSLFPSKNALDAHSHNRNITFKNGRDFIFFRHHRFQIKESGQKDKASMNEVGPRFSLRLESLHKGLFE-NSPDFEYI 894
            PKTIESM  Y   +V+ ++ E+      DE +   N  T PKV+IT + K       FC E    IP +E   RKN+ +K I++QAK+  FT ++++ E+ K  + + I+C LP+GPT+ F+++      + K    +T HF       P+V L NF T +G  ++R+   LFP        +  R +TF N RD+IFFRHHR++ K+ G   KA++ E+GPRF+LRL+ L KG F+    +FE++
Sbjct:  137 PKTIESMREYDATMVNEEDDEVEHDEANDEFAPYFNRETSPKVMITMTPKAKITTFKFCFELQKCIPNSEIFTRKNVLLKTIIEQAKEREFTDLLVVHEDRKKPNGI-IFCHLPEGPTAYFKINSLTFTQDLKKFGESTSHF-------PEVILNNFNTRLGHNIARMLACLFPHDPKF---TGRRVVTFHNQRDYIFFRHHRYEFKKEGS--KAALLELGPRFTLRLKWLQKGTFDAKWGEFEWV 369

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BLAST of Ribosome production factor 1 vs. Ensembl Celegans
Match: ZK795.3 (Brix domain-containing protein ZK795.3 [Source:UniProtKB/Swiss-Prot;Acc:O62518])

HSP 1 Score: 95.5153 bits (236), Expect = 1.344e-22
Identity = 61/193 (31.61%), Postives = 92/193 (47.67%), Query Frame = 1

Query:  292 EPKVLITSSIKGSPRLHGFCIEFASVIPQAEYCNRKNLQVKNIVKQAKDNSFTAVIIIGENDKIIDSMKIYCLPDGPTSNFRLSHAYLRSEHKNTKHFSGLENINPQVCLLNFKTMMGLRLSRIFLSLFPSKNALDAHSHNRNITFKNGRDFIFFRHHRFQIKESGQKDKASMNEVGPRFSLRLESLHKGLFE 870
            +PK++IT+S   S RL  F  E   + P A+  NR +  VK +V+ +K    T +II  E     D M +  LP GPT+ F +++  +R +  N    S      P +   N  + +G R + I   LFP    +      R ITF N  D+I FRHH ++ +  G+     + E GPRF L+   +  G  E
Sbjct:   77 DPKIVITTSRDPSSRLKMFAKEMKLIFPNAQRINRGHYDVKQVVQASKAQDSTDLIIFTETRGNPDGMLVCHLPFGPTAFFSMANVVMRHDIPNCGTMS---EQYPHLIFDNLNSKLGHRFTTILKHLFP----VPKPDSKRIITFSNSEDYISFRHHVYKTENDGE---VELTEAGPRFELKPYQIKLGTLE 259

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BLAST of Ribosome production factor 1 vs. Ensembl Fly
Match: CG6712 (gene:FBgn0032408 transcript:FBtr0080364)

HSP 1 Score: 143.665 bits (361), Expect = 2.004e-39
Identity = 94/263 (35.74%), Postives = 145/263 (55.13%), Query Frame = 1

Query:  139 RIERKKAGIVLEPK-TIESMSTYKTPVVS----SDNKEMSEVLEKDELSFIINNNTEPKVLITSSIKGSPRLHGFCIEFASVIPQAEYCNRKNLQVKNIVKQAKDNSFTAVIIIGENDKIIDSMKIYCLPDGPTSNFRLSHAYLRS----EHKN-TKHFSGLENINPQVCLLNFKTMMGLRLSRIFLSLFPSKNALDAHSHNRNITFKNGRDFIFFRHHRFQIKESGQKDKASMNEVGPRFSLRLESLHKGLFEN-SPDFEYI 894
            R  R+KAG+   P  TIES+       V+    SDN+E+ + L+ D+ S     + EPKVLIT +     +   F +E + + P A    R    VK I K A+   FT V+I+ E+ +  + + +  LP+GPT++F+LS+  L S    +HK  TKH        P+V L NF T +GL + R+  +LF            R +TF N RD+IFFRHHR++  + G++ K  + E+GPRF+L+L SL +G F++ + D+ +I
Sbjct:  128 RRARRKAGVPANPGHTIESLREKDQTEVANLNDSDNEELQKELQLDDFSSYFERSYEPKVLITFADNPVTKTRKFGLELSRIFPNALVKIRNKSSVKKICKSAEREEFTDVVIVNEDRRKPNGLLVIHLPNGPTAHFKLSNVKLTSDIKRDHKEITKH-------RPEVILNNFTTRLGLTVGRMLGALFHHDPEFRGR---RAVTFHNQRDYIFFRHHRYEFTKEGKRVK--LRELGPRFTLKLRSLQEGTFDSKTGDYAWI 378

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BLAST of Ribosome production factor 1 vs. Ensembl Fly
Match: CG11920 (gene:FBgn0039274 transcript:FBtr0084769)

HSP 1 Score: 110.923 bits (276), Expect = 4.198e-28
Identity = 69/203 (33.99%), Postives = 108/203 (53.20%), Query Frame = 1

Query:  292 EPKVLITSSIKGSPRLHGFCIEFASVIPQAEYCNRKNLQVKNIVKQAKDNSFTAVIIIGENDKIIDSMKIYCLPDGPTSNFRLSHAYLRSEHKNTKHFSGLENINPQVCLLNFKTMMGLRLSRIFLSLFPSKNALDAHSHNRNITFKNGRDFIFFRHHRFQIKESGQKDKASMNEVGPRFSLRLESLHKGLFEN--SPDFEYI 894
            +PK+++T+S   S RL  F  E   +IP A+  NR N Q+  ++   + N+ T  +I+ E+  I DS+ +  LP GPT+ F +S   +R +  +  H S  +   P +   NFKT +GLR  +I   LFP    +   +  R ++F N  D I FRHH+++        +  + EVGPRFSL+L  +  G  EN  + D E+I
Sbjct:   80 DPKIMLTTSHNPSSRLKMFMKELRLIIPNAQQMNRGNYQLTTLMHACRANNVTDFLIVHEHRGIPDSLVVCHLPYGPTAFFNISDVVMRHDIPDIGHMSEQK---PHLIFNNFKTPIGLRTVKILKHLFP----VPKENSQRVMSFLNHNDSIIFRHHQYKYVNK----ELELTEVGPRFSLKLYQIKLGTLENIKAADTEWI 271

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BLAST of Ribosome production factor 1 vs. Ensembl Zebrafish
Match: rpf1 (ribosome production factor 1 homolog [Source:NCBI gene;Acc:415250])

HSP 1 Score: 155.221 bits (391), Expect = 4.028e-44
Identity = 93/248 (37.50%), Postives = 140/248 (56.45%), Query Frame = 1

Query:  175 PKTIESMSTYKTPVVSSDNKEMSEVLEKDELSFIINNNTEPKVLITSSIKGSPRLHGFCIEFASVIPQAEYCNRKNLQVKNIVKQAKDNSFTAVIIIGENDKIIDSMKIYCLPDGPTSNFRLSHAYLRSEHKN-----TKHFSGLENINPQVCLLNFKTMMGLRLSRIFLSLFPSKNALDAHSHNRNI-TFKNGRDFIFFRHHRFQIKESGQKDKASMNEVGPRFSLRLESLHKGLFENS-PDFEYIY 897
            PKTIE+   Y    V+ +++E++     DE S   N  T PKVLIT+S +   R   FC + A+VIP A    R+ L +K ++ Q     FT +++I E+ K+ + M +  LPDGPT++F++S   LR E K      T+H       +P+V L NF T +G  + R+F +LFP     D     R + TF N RDFIFFR HR+  K    + K  + E+GPRF+L+L SL KG F++   ++E+++
Sbjct:  105 PKTIENQRIYDETTVNPEDEEVAFDEGTDEFSAYFNRLTNPKVLITTSDRPRGRTVRFCDQLATVIPHAYVYYRRGLALKKVIPQCISRGFTYLMVINEDRKVPNGMVLCHLPDGPTAHFKVSSVRLRKEMKRRGKNPTEH-------SPEVILNNFTTRLGHSIGRLFAALFPH----DPQFVGRQVATFHNQRDFIFFRFHRYIFK---NEKKVGIQELGPRFTLKLRSLQKGTFDSKFGEYEWVH 338

[Close]

BLAST of Ribosome production factor 1 vs. Ensembl Zebrafish
Match: rpf1 (ribosome production factor 1 homolog [Source:NCBI gene;Acc:415250])

HSP 1 Score: 155.221 bits (391), Expect = 4.621e-44
Identity = 93/248 (37.50%), Postives = 140/248 (56.45%), Query Frame = 1

Query:  175 PKTIESMSTYKTPVVSSDNKEMSEVLEKDELSFIINNNTEPKVLITSSIKGSPRLHGFCIEFASVIPQAEYCNRKNLQVKNIVKQAKDNSFTAVIIIGENDKIIDSMKIYCLPDGPTSNFRLSHAYLRSEHKN-----TKHFSGLENINPQVCLLNFKTMMGLRLSRIFLSLFPSKNALDAHSHNRNI-TFKNGRDFIFFRHHRFQIKESGQKDKASMNEVGPRFSLRLESLHKGLFENS-PDFEYIY 897
            PKTIE+   Y    V+ +++E++     DE S   N  T PKVLIT+S +   R   FC + A+VIP A    R+ L +K ++ Q     FT +++I E+ K+ + M +  LPDGPT++F++S   LR E K      T+H       +P+V L NF T +G  + R+F +LFP     D     R + TF N RDFIFFR HR+  K    + K  + E+GPRF+L+L SL KG F++   ++E+++
Sbjct:  105 PKTIENQRIYDETTVNPEDEEVAFDEGTDEFSAYFNRLTNPKVLITTSDRPRGRTVRFCDQLATVIPHAYVYYRRGLALKKVIPQCISRGFTYLMVINEDRKVPNGMVLCHLPDGPTAHFKVSSVRLRKEMKRRGKNPTEH-------SPEVILNNFTTRLGHSIGRLFAALFPH----DPQFVGRQVATFHNQRDFIFFRFHRYIFK---NEKKVGIQELGPRFTLKLRSLQKGTFDSKFGEYEWVH 338

[Close]

BLAST of Ribosome production factor 1 vs. Ensembl Zebrafish
Match: rpf1 (ribosome production factor 1 homolog [Source:NCBI gene;Acc:415250])

HSP 1 Score: 154.836 bits (390), Expect = 6.107e-44
Identity = 93/248 (37.50%), Postives = 140/248 (56.45%), Query Frame = 1

Query:  175 PKTIESMSTYKTPVVSSDNKEMSEVLEKDELSFIINNNTEPKVLITSSIKGSPRLHGFCIEFASVIPQAEYCNRKNLQVKNIVKQAKDNSFTAVIIIGENDKIIDSMKIYCLPDGPTSNFRLSHAYLRSEHKN-----TKHFSGLENINPQVCLLNFKTMMGLRLSRIFLSLFPSKNALDAHSHNRNI-TFKNGRDFIFFRHHRFQIKESGQKDKASMNEVGPRFSLRLESLHKGLFENS-PDFEYIY 897
            PKTIE+   Y    V+ +++E++     DE S   N  T PKVLIT+S +   R   FC + A+VIP A    R+ L +K ++ Q     FT +++I E+ K+ + M +  LPDGPT++F++S   LR E K      T+H       +P+V L NF T +G  + R+F +LFP     D     R + TF N RDFIFFR HR+  K    + K  + E+GPRF+L+L SL KG F++   ++E+++
Sbjct:  108 PKTIENQRIYDETTVNPEDEEVAFDEGTDEFSAYFNRLTNPKVLITTSDRPRGRTVRFCDQLATVIPHAYVYYRRGLALKKVIPQCISRGFTYLMVINEDRKVPNGMVLCHLPDGPTAHFKVSSVRLRKEMKRRGKNPTEH-------SPEVILNNFTTRLGHSIGRLFAALFPH----DPQFVGRQVATFHNQRDFIFFRFHRYIFK---NEKKVGIQELGPRFTLKLRSLQKGTFDSKFGEYEWVH 341

[Close]

BLAST of Ribosome production factor 1 vs. Ensembl Zebrafish
Match: imp4 (IMP U3 small nucleolar ribonucleoprotein 4 [Source:ZFIN;Acc:ZDB-GENE-040718-474])

HSP 1 Score: 104.375 bits (259), Expect = 1.652e-25
Identity = 65/202 (32.18%), Postives = 102/202 (50.50%), Query Frame = 1

Query:  292 EPKVLITSSIKGSPRLHGFCIEFASVIPQAEYCNRKNLQVKNIVKQAKDNSFTAVIIIGENDKIIDSMKIYCLPDGPTSNFRLSHAYLRSEHKNTKHFSGLENINPQVCLLNFKTMMGLRLSRIFLSLFPSKNALDAHSHNRNITFKNGRDFIFFRHHRFQIKESGQKDKASMNEVGPRFSLRLESLHKGLFEN--SPDFEY 891
            +PK+++T+S   S RL  F  E   + P A+  NR N +VK +V   K N+ T ++I+ E     D + +  LP GPT+ F + +  +R    +      +    P +   NF + +G R+S I   LFP    +      R ITF N  D+I FRHH +  K++  K+   + EVGPRF ++L  +  G  EN  + D E+
Sbjct:   82 DPKIMVTTSRDPSSRLKMFAKEMKLMFPGAQRMNRGNHEVKTLVHACKSNNVTDLVIVHETRGQPDGLVVCHLPFGPTAYFTMYNVVMRH---DVPDIGTMSEAYPHLIFHNFTSRLGRRVSNILKYLFP----VPKEDSRRVITFANTDDYISFRHHTY--KKTDHKN-VELTEVGPRFEMKLYMIKLGTLENESTADVEW 273

[Close]

BLAST of Ribosome production factor 1 vs. Ensembl Zebrafish
Match: rpf1 (ribosome production factor 1 homolog [Source:NCBI gene;Acc:415250])

HSP 1 Score: 92.0485 bits (227), Expect = 2.255e-21
Identity = 50/132 (37.88%), Postives = 76/132 (57.58%), Query Frame = 1

Query:  175 PKTIESMSTYKTPVVSSDNKEMSEVLEKDELSFIINNNTEPKVLITSSIKGSPRLHGFCIEFASVIPQAEYCNRKNLQVKNIVKQAKDNSFTAVIIIGENDKIIDSMKIYCLPDGPTSNFRLSHAYLRSEHK 570
            PKTIE+   Y    V+ +++E++     DE S   N  T PKVLIT+S +   R   FC + A+VIP A    R+ L +K ++ Q     FT +++I E+ K+ + M +  LPDGPT++F++S   LR E K
Sbjct:  105 PKTIENQRIYDETTVNPEDEEVAFDEGTDEFSAYFNRLTNPKVLITTSDRPRGRTVRFCDQLATVIPHAYVYYRRGLALKKVIPQCISRGFTYLMVINEDRKVPNGMVLCHLPDGPTAHFKVSSVRLRKEMK 236

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BLAST of Ribosome production factor 1 vs. Ensembl Xenopus
Match: ffar4 (free fatty acid receptor 4 [Source:Xenbase;Acc:XB-GENE-954927])

HSP 1 Score: 148.288 bits (373), Expect = 1.233e-41
Identity = 89/246 (36.18%), Postives = 140/246 (56.91%), Query Frame = 1

Query:  175 PKTIESMSTYKTPVVSSDNKEMSEVLEKDELSFIINNNTEPKVLITSSIKGSPRLHGFCIEFASVIPQAEYCNRKNLQVKNIVKQAKDNSFTAVIIIGENDKIIDSMKIYC-LPDGPTSNFRLSHAYLRSEHKNTKHFSGLENIN--PQVCLLNFKTMMGLRLSRIFLSLFPSKNALDAHSHNRNI-TFKNGRDFIFFRHHRFQIKESGQKDKASMNEVGPRFSLRLESLHKGLFENS-PDFEYIY 897
            PKTIE+   Y    V   ++E++     DE +   N  T PK+LIT+S +   R   F  + +SVIP ++   R+ L +K ++ Q     +T +III E+ K+ + + ++C LPDGPT++F++S+  LR E K      G E     P+V L NF T +G  + R+F SL+P     D     R + TF N RD+IFFR+HR+  K    + K  + E+GPRF+L+L SL KG F++   ++E+++
Sbjct:   76 PKTIENQRVYDETTVDPADEEVALDEAIDEFAPYFNKQTTPKILITTSDRPRGRTVRFTEQLSSVIPNSDVYYRRGLALKKVIPQCISRDYTDLIIINEDRKVPNGL-VFCHLPDGPTAHFKMSNVRLRKEMKR----KGKEPTEHKPEVILNNFTTRLGHSIGRMFASLYPH----DPQFTGRQVATFHNQRDYIFFRYHRYIFK---SEKKVGIQELGPRFTLKLRSLQKGTFDSKYGEYEWVH 309

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BLAST of Ribosome production factor 1 vs. Ensembl Xenopus
Match: ffar4 (free fatty acid receptor 4 [Source:Xenbase;Acc:XB-GENE-954927])

HSP 1 Score: 148.288 bits (373), Expect = 1.319e-41
Identity = 89/246 (36.18%), Postives = 140/246 (56.91%), Query Frame = 1

Query:  175 PKTIESMSTYKTPVVSSDNKEMSEVLEKDELSFIINNNTEPKVLITSSIKGSPRLHGFCIEFASVIPQAEYCNRKNLQVKNIVKQAKDNSFTAVIIIGENDKIIDSMKIYC-LPDGPTSNFRLSHAYLRSEHKNTKHFSGLENIN--PQVCLLNFKTMMGLRLSRIFLSLFPSKNALDAHSHNRNI-TFKNGRDFIFFRHHRFQIKESGQKDKASMNEVGPRFSLRLESLHKGLFENS-PDFEYIY 897
            PKTIE+   Y    V   ++E++     DE +   N  T PK+LIT+S +   R   F  + +SVIP ++   R+ L +K ++ Q     +T +III E+ K+ + + ++C LPDGPT++F++S+  LR E K      G E     P+V L NF T +G  + R+F SL+P     D     R + TF N RD+IFFR+HR+  K    + K  + E+GPRF+L+L SL KG F++   ++E+++
Sbjct:   83 PKTIENQRVYDETTVDPADEEVALDEAIDEFAPYFNKQTTPKILITTSDRPRGRTVRFTEQLSSVIPNSDVYYRRGLALKKVIPQCISRDYTDLIIINEDRKVPNGL-VFCHLPDGPTAHFKMSNVRLRKEMKR----KGKEPTEHKPEVILNNFTTRLGHSIGRMFASLYPH----DPQFTGRQVATFHNQRDYIFFRYHRYIFK---SEKKVGIQELGPRFTLKLRSLQKGTFDSKYGEYEWVH 316

[Close]

BLAST of Ribosome production factor 1 vs. Ensembl Xenopus
Match: ffar4 (free fatty acid receptor 4 [Source:Xenbase;Acc:XB-GENE-954927])

HSP 1 Score: 148.288 bits (373), Expect = 2.195e-41
Identity = 89/246 (36.18%), Postives = 140/246 (56.91%), Query Frame = 1

Query:  175 PKTIESMSTYKTPVVSSDNKEMSEVLEKDELSFIINNNTEPKVLITSSIKGSPRLHGFCIEFASVIPQAEYCNRKNLQVKNIVKQAKDNSFTAVIIIGENDKIIDSMKIYC-LPDGPTSNFRLSHAYLRSEHKNTKHFSGLENIN--PQVCLLNFKTMMGLRLSRIFLSLFPSKNALDAHSHNRNI-TFKNGRDFIFFRHHRFQIKESGQKDKASMNEVGPRFSLRLESLHKGLFENS-PDFEYIY 897
            PKTIE+   Y    V   ++E++     DE +   N  T PK+LIT+S +   R   F  + +SVIP ++   R+ L +K ++ Q     +T +III E+ K+ + + ++C LPDGPT++F++S+  LR E K      G E     P+V L NF T +G  + R+F SL+P     D     R + TF N RD+IFFR+HR+  K    + K  + E+GPRF+L+L SL KG F++   ++E+++
Sbjct:   99 PKTIENQRVYDETTVDPADEEVALDEAIDEFAPYFNKQTTPKILITTSDRPRGRTVRFTEQLSSVIPNSDVYYRRGLALKKVIPQCISRDYTDLIIINEDRKVPNGL-VFCHLPDGPTAHFKMSNVRLRKEMKR----KGKEPTEHKPEVILNNFTTRLGHSIGRMFASLYPH----DPQFTGRQVATFHNQRDYIFFRYHRYIFK---SEKKVGIQELGPRFTLKLRSLQKGTFDSKYGEYEWVH 332

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BLAST of Ribosome production factor 1 vs. Ensembl Xenopus
Match: ENSXETT00000024813.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:KV466346.1:290:2124:-1 gene:ENSXETG00000014885.1 transcript:ENSXETT00000024813.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 60.4622 bits (145), Expect = 2.228e-10
Identity = 40/149 (26.85%), Postives = 69/149 (46.31%), Query Frame = 1

Query:  343 GFCIEFASVIPQAEYCNRKNLQVKNIVKQAKDNSFTAVIIIGENDKIIDSMKIYCLPDGPTSNFRLSHAYLRSEHKNTKHFSGLENINPQVCLLNFKTMMGLRLSRIFLSLFPSKNALDAHSHNRNITFKNGRDFIFFRHHRFQIKESG 789
            G   E   + P A+  NR   +V  +V+  + N  T ++I+ E+  + D + +  LP GPT+ F L +  +R +  +      +   +P +   NF + +G R++ I   LFP    +      R ITF N  D+I FR     ++  G
Sbjct:   14 GTVPEMRLIFPNAQRMNRGKHEVGALVQACRANDVTDLLIVHEHRGMPDGLIVCHLPFGPTAYFTLCNVVMRHDIPD---LGTMSEAHPHLIFHNFSSRLGQRVADIMKYLFP----VPKEESKRVITFANQDDYISFRGWVHTMQLGG 155

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BLAST of Ribosome production factor 1 vs. Ensembl Xenopus
Match: ENSXETT00000024824.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:KV466346.1:290:2136:-1 gene:ENSXETG00000014885.1 transcript:ENSXETT00000024824.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 60.4622 bits (145), Expect = 2.470e-10
Identity = 38/135 (28.15%), Postives = 64/135 (47.41%), Query Frame = 1

Query:  355 EFASVIPQAEYCNRKNLQVKNIVKQAKDNSFTAVIIIGENDKIIDSMKIYCLPDGPTSNFRLSHAYLRSEHKNTKHFSGLENINPQVCLLNFKTMMGLRLSRIFLSLFPSKNALDAHSHNRNITFKNGRDFIFFR 759
            E   + P A+  NR   +V  +V+  + N  T ++I+ E+  + D + +  LP GPT+ F L +  +R +         +   +P +   NF + +G R++ I   LFP    +      R ITF N  D+I FR
Sbjct:   16 EMRLIFPNAQRMNRGKHEVGALVQACRANDVTDLLIVHEHRGMPDGLIVCHLPFGPTAYFTLCNVVMRHD---IPDLGTMSEAHPHLIFHNFSSRLGQRVADIMKYLFP----VPKEESKRVITFANQDDYISFR 143

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BLAST of Ribosome production factor 1 vs. Ensembl Mouse
Match: Rpf1 (ribosome production factor 1 homolog [Source:MGI Symbol;Acc:MGI:1917535])

HSP 1 Score: 142.51 bits (358), Expect = 2.343e-39
Identity = 83/242 (34.30%), Postives = 135/242 (55.79%), Query Frame = 1

Query:  175 PKTIESMSTYKTPVVSSDNKEMSEVLEKDELSFIINNNTEPKVLITSSIKGSPRLHGFCIEFASVIPQAEYCNRKNLQVKNIVKQAKDNSFTAVIIIGENDKIIDSMKIYCLPDGPTSNFRLSHAYLRSEHKNTKHFSGLENINPQVCLLNFKTMMGLRLSRIFLSLFPSKNALDAHSHNRNITFKNGRDFIFFRHHRFQIKESGQKDKASMNEVGPRFSLRLESLHKGLFENS-PDFEYIY 897
            PKTI++   Y    V  +++E++     DE +   N  T PK+LIT+S +   R    C + ++VIP +    R+ L +K I+ Q     FT +I+I E+ K  + + +  LP+GPT++F++S   LR E K  +     E++ P++ L NF T +G  + R+F SLFP           +  TF N RD+IFFR HR+  K    + K  + E+GPRF+L+L SL KG F++   ++E+++
Sbjct:  102 PKTIDNQRVYDETTVDPNDEEVAYDEATDEFASYFNRQTSPKILITTSDRPHGRTVRLCEQLSTVIPDSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKR-RGKDPTEHV-PEIILNNFTTRLGHSIGRMFASLFPHNPQFIG---RQVATFHNQRDYIFFRFHRYIFKS---EKKVGIQELGPRFTLKLRSLQKGTFDSKYGEYEWVH 335

[Close]

BLAST of Ribosome production factor 1 vs. Ensembl Mouse
Match: Imp4 (IMP4, U3 small nucleolar ribonucleoprotein [Source:MGI Symbol;Acc:MGI:106572])

HSP 1 Score: 96.6709 bits (239), Expect = 1.163e-22
Identity = 65/204 (31.86%), Postives = 101/204 (49.51%), Query Frame = 1

Query:  292 EPKVLITSSIKGSPRLHGFCIEFASVIPQAEYCNRKNLQVKNIVKQAKDNSFTAVIIIGENDKIIDSMKIYCLPDGPTSNFRLSHAYLRSEHKNTKHFSGLENINPQVCLLNFKTMMGLRLSRIFLSLFPSKNALDAHSHNRNITFKNGRDFIFFRHHRFQIKESGQKDKASMNEVGPRFSLRLESLHKGLFEN--SPDFEYIY 897
            +PKV+IT+S   S RL  F  E   V P A+  NR   +V  +V+  K N  T ++++ E+      + +  LP GPT+ F L +  +R    +      +    P +    F + +G R+S I   LFP     D+H   R ITF N  D+I FRHH +  K++  ++   + EVGPRF L+L  +  G  E   + D E+ +
Sbjct:   82 DPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMR---HDIPDLGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKD-DSH---RVITFANQDDYISFRHHVY--KKTDHRN-VELTEVGPRFELKLYMIRLGTLEQEATADVEWRW 275

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BLAST of Ribosome production factor 1 vs. Ensembl Mouse
Match: Rpf1 (ribosome production factor 1 homolog [Source:MGI Symbol;Acc:MGI:1917535])

HSP 1 Score: 83.1889 bits (204), Expect = 4.653e-19
Identity = 51/136 (37.50%), Postives = 77/136 (56.62%), Query Frame = 1

Query:  508 LPDGPTSNFRLSHAYLRSEHKN-----TKHFSGLENINPQVCLLNFKTMMGLRLSRIFLSLFPSKNALDAHSHNRNITFKNGRDFIFFRHHRFQIKESGQKDKASMNEVGPRFSLRLESLHKGLFENS-PDFEYIY 897
            LP+GPT++F++S   LR E K      T+H        P++ L NF T +G  + R+F SLFP           +  TF N RD+IFFR HR+  K    + K  + E+GPRF+L+L SL KG F++   ++E+++
Sbjct:    8 LPNGPTAHFKMSSVRLRKEIKRRGKDPTEHV-------PEIILNNFTTRLGHSIGRMFASLFPHNPQFIG---RQVATFHNQRDYIFFRFHRYIFKS---EKKVGIQELGPRFTLKLRSLQKGTFDSKYGEYEWVH 130

[Close]

BLAST of Ribosome production factor 1 vs. Ensembl Mouse
Match: Rpf1 (ribosome production factor 1 homolog [Source:MGI Symbol;Acc:MGI:1917535])

HSP 1 Score: 61.6178 bits (148), Expect = 9.511e-11
Identity = 33/102 (32.35%), Postives = 54/102 (52.94%), Query Frame = 1

Query:  175 PKTIESMSTYKTPVVSSDNKEMSEVLEKDELSFIINNNTEPKVLITSSIKGSPRLHGFCIEFASVIPQAEYCNRKNLQVKNIVKQAKDNSFTAVIIIGENDK 480
            PKTI++   Y    V  +++E++     DE +   N  T PK+LIT+S +   R    C + ++VIP +    R+ L +K I+ Q     FT +I+I E+ K
Sbjct:  102 PKTIDNQRVYDETTVDPNDEEVAYDEATDEFASYFNRQTSPKILITTSDRPHGRTVRLCEQLSTVIPDSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRK 203

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BLAST of Ribosome production factor 1 vs. UniProt/SwissProt
Match: sp|P54073|YUY1_CAEEL (Brix domain-containing protein F44G4.1 OS=Caenorhabditis elegans OX=6239 GN=F44G4.1 PE=4 SV=4)

HSP 1 Score: 156.762 bits (395), Expect = 1.738e-43
Identity = 92/246 (37.40%), Postives = 141/246 (57.32%), Query Frame = 1

Query:  175 PKTIESMSTYKTPVVSSDNKEMSEVLEKDELSFIINNNTEPKVLITSSIKGSPRLHGFCIEFASVIPQAEYCNRKNLQVKNIVKQAKDNSFTAVIIIGENDKIIDSMKIYC-LPDGPTSNFRLSHAYLRSEHK----NTKHFSGLENINPQVCLLNFKTMMGLRLSRIFLSLFPSKNALDAHSHNRNITFKNGRDFIFFRHHRFQIKESGQKDKASMNEVGPRFSLRLESLHKGLFE-NSPDFEYI 894
            PKTIESM  Y   +V+ ++ E+      DE +   N  T PKV+IT + K       FC E    IP +E   RKN+ +K I++QAK+  FT ++++ E+ K  + + I+C LP+GPT+ F+++      + K    +T HF       P+V L NF T +G  ++R+   LFP        +  R +TF N RD+IFFRHHR++ K+ G   KA++ E+GPRF+LRL+ L KG F+    +FE++
Sbjct:  137 PKTIESMREYDATMVNEEDDEVEHDEANDEFAPYFNRETSPKVMITMTPKAKITTFKFCFELQKCIPNSEIFTRKNVLLKTIIEQAKEREFTDLLVVHEDRKKPNGI-IFCHLPEGPTAYFKINSLTFTQDLKKFGESTSHF-------PEVILNNFNTRLGHNIARMLACLFPHDPKF---TGRRVVTFHNQRDYIFFRHHRYEFKKEGS--KAALLELGPRFTLRLKWLQKGTFDAKWGEFEWV 369

[Close]

BLAST of Ribosome production factor 1 vs. UniProt/SwissProt
Match: sp|Q6IQU6|RPF1_DANRE (Ribosome production factor 1 OS=Danio rerio OX=7955 GN=rpf1 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.529e-43
Identity = 93/248 (37.50%), Postives = 140/248 (56.45%), Query Frame = 1

Query:  175 PKTIESMSTYKTPVVSSDNKEMSEVLEKDELSFIINNNTEPKVLITSSIKGSPRLHGFCIEFASVIPQAEYCNRKNLQVKNIVKQAKDNSFTAVIIIGENDKIIDSMKIYCLPDGPTSNFRLSHAYLRSEHKN-----TKHFSGLENINPQVCLLNFKTMMGLRLSRIFLSLFPSKNALDAHSHNRNI-TFKNGRDFIFFRHHRFQIKESGQKDKASMNEVGPRFSLRLESLHKGLFENS-PDFEYIY 897
            PKTIE+   Y    V+ +++E++     DE S   N  T PKVLIT+S +   R   FC + A+VIP A    R+ L +K ++ Q     FT +++I E+ K+ + M +  LPDGPT++F++S   LR E K      T+H       +P+V L NF T +G  + R+F +LFP     D     R + TF N RDFIFFR HR+  K    + K  + E+GPRF+L+L SL KG F++   ++E+++
Sbjct:   83 PKTIENQRIYDETTVNPEDEEVAFDEGTDEFSAYFNRLTNPKVLITTSDRPRGRTVRFCDQLATVIPHAYVYYRRGLALKKVIPQCISRGFTYLMVINEDRKVPNGMVLCHLPDGPTAHFKVSSVRLRKEMKRRGKNPTEH-------SPEVILNNFTTRLGHSIGRLFAALFPH----DPQFVGRQVATFHNQRDFIFFRFHRYIFK---NEKKVGIQELGPRFTLKLRSLQKGTFDSKFGEYEWVH 316

[Close]

BLAST of Ribosome production factor 1 vs. UniProt/SwissProt
Match: sp|Q8AVP1|RPF1_XENLA (Ribosome production factor 1 OS=Xenopus laevis OX=8355 GN=rpf1 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.337e-41
Identity = 87/245 (35.51%), Postives = 139/245 (56.73%), Query Frame = 1

Query:  175 PKTIESMSTYKTPVVSSDNKEMSEVLEKDELSFIINNNTEPKVLITSSIKGSPRLHGFCIEFASVIPQAEYCNRKNLQVKNIVKQAKDNSFTAVIIIGENDKIIDSMKIYCLPDGPTSNFRLSHAYLRSEHKNTKHFSGLENIN--PQVCLLNFKTMMGLRLSRIFLSLFPSKNALDAHSHNRNI-TFKNGRDFIFFRHHRFQIKESGQKDKASMNEVGPRFSLRLESLHKGLFENS-PDFEYIY 897
            PKTIE+   Y    V   ++E++     DE +   N  T PK+LIT+S +   R   F  + +S+IP ++   R+ L +K I+ Q     +T +++I E+ K+ + + +  LPDGPT++F++S+  LR E K      G E     P+V L NF T +G  + R+F SL+P     D H   R + TF N RD+IFFR+HR+  K    + K  + E+GPRF+L+L SL KG F++   ++E+++
Sbjct:   96 PKTIENQRVYDETTVDPADEEVALDEATDEFAPYFNKQTTPKILITTSDRPRGRSVRFTEQLSSIIPNSDVYYRRGLALKKIIPQCVSRDYTDLLVINEDRKVPNGLVLCHLPDGPTAHFKISNVRLRKEMKR----KGKEPTEHKPEVILNNFTTRLGHSIGRMFASLYPH----DPHFVGRQVATFHNQRDYIFFRYHRYLFK---SEKKVGIQELGPRFTLKLRSLQKGTFDSKYGEYEWVH 329

[Close]

BLAST of Ribosome production factor 1 vs. UniProt/SwissProt
Match: sp|Q7TND5|RPF1_MOUSE (Ribosome production factor 1 OS=Mus musculus OX=10090 GN=Rpf1 PE=2 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 1.639e-38
Identity = 83/242 (34.30%), Postives = 135/242 (55.79%), Query Frame = 1

Query:  175 PKTIESMSTYKTPVVSSDNKEMSEVLEKDELSFIINNNTEPKVLITSSIKGSPRLHGFCIEFASVIPQAEYCNRKNLQVKNIVKQAKDNSFTAVIIIGENDKIIDSMKIYCLPDGPTSNFRLSHAYLRSEHKNTKHFSGLENINPQVCLLNFKTMMGLRLSRIFLSLFPSKNALDAHSHNRNITFKNGRDFIFFRHHRFQIKESGQKDKASMNEVGPRFSLRLESLHKGLFENS-PDFEYIY 897
            PKTI++   Y    V  +++E++     DE +   N  T PK+LIT+S +   R    C + ++VIP +    R+ L +K I+ Q     FT +I+I E+ K  + + +  LP+GPT++F++S   LR E K  +     E++ P++ L NF T +G  + R+F SLFP           +  TF N RD+IFFR HR+  K    + K  + E+GPRF+L+L SL KG F++   ++E+++
Sbjct:  102 PKTIDNQRVYDETTVDPNDEEVAYDEATDEFASYFNRQTSPKILITTSDRPHGRTVRLCEQLSTVIPDSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKR-RGKDPTEHV-PEIILNNFTTRLGHSIGRMFASLFPHNPQFIG---RQVATFHNQRDYIFFRFHRYIFKS---EKKVGIQELGPRFTLKLRSLQKGTFDSKYGEYEWVH 335

[Close]

BLAST of Ribosome production factor 1 vs. UniProt/SwissProt
Match: sp|Q5RJS9|RPF1_RAT (Ribosome production factor 1 OS=Rattus norvegicus OX=10116 GN=Rpf1 PE=2 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 1.837e-38
Identity = 83/242 (34.30%), Postives = 135/242 (55.79%), Query Frame = 1

Query:  175 PKTIESMSTYKTPVVSSDNKEMSEVLEKDELSFIINNNTEPKVLITSSIKGSPRLHGFCIEFASVIPQAEYCNRKNLQVKNIVKQAKDNSFTAVIIIGENDKIIDSMKIYCLPDGPTSNFRLSHAYLRSEHKNTKHFSGLENINPQVCLLNFKTMMGLRLSRIFLSLFPSKNALDAHSHNRNITFKNGRDFIFFRHHRFQIKESGQKDKASMNEVGPRFSLRLESLHKGLFENS-PDFEYIY 897
            PKTI++   Y    V  +++E++     DE +   N  T PK+LIT+S +   R    C + ++VIP +    R+ L +K I+ Q     FT +I+I E+ K  + + +  LP+GPT++F++S   LR E K  +     E++ P++ L NF T +G  + R+F SLFP           +  TF N RD+IFFR HR+  K    + K  + E+GPRF+L+L SL KG F++   ++E+++
Sbjct:  102 PKTIDNQRVYDETTVDPNDEEVAYDEATDEFASYFNRQTSPKILITTSDRPHGRTVRLCEQLSTVIPDSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKR-RGKDPTEHV-PEIILNNFTTRLGHSIGRMFASLFPHNPQFIG---RQVATFHNQRDYIFFRFHRYIFKS---EKKVGIQELGPRFTLKLRSLQKGTFDSKYGEYEWVH 335

[Close]

BLAST of Ribosome production factor 1 vs. TrEMBL
Match: A0A183SPU7 (Brix domain-containing protein OS=Schistocephalus solidus OX=70667 GN=SSLN_LOCUS6245 PE=4 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 2.934e-57
Identity = 111/298 (37.25%), Postives = 174/298 (58.39%), Query Frame = 1

Query:   58 QKTMSKHHEKNLAIKAKKEKSKLQRKARIERKKAGIVLE-PKTIESMSTYKTPVVSSDNKEMSEVLEKDELSFIINNNTEPKVLITSSIKGSPRLHGFCIEFASVIPQAEYCNRKNLQVKNIVKQAKDNSFTAVIIIGENDKIIDSMKIYCLPDGPTSNFRLSHAYLRSEHKNTKHFSGLE-NINPQVCLLNFKTMMGLRLSRIFLSLFPSKNALDAHSHNRNITFKNGRDFIFFRHHRFQIKE----------------SGQKDKASMNEVGPRFSLRLESLHKGLFENS-PDFEYI 894
            +K  +KHHE+ +A K + +K+K Q K R ERKK+G     P+T+E++ T    ++  D+ ++ +  EKDE + I +N  EPK+L+T S + SPR  GFC E A VIP      R +  +K ++ +A ++ +TAV+++ E+ K I+++ I  LP GPT+ FRLS+   R + +  KH  G+E  + P + L  F T +G R+ RI  +LFP+ +      H R + F N RDFIFFRH+R+Q K                 +G  D+   NEVGPRF+L+L S+  G F++   D+E++
Sbjct:    3 RKETTKHHEREIARKERAKKAKEQSKLRKERKKSGKPAGIPQTLETLRTPDETILPKDDVDVVKEEEKDEFTRIYSNEVEPKLLLTHSDRVSPRTIGFCKELARVIPNMTVAARWHAPLKKLIPKAIEHGYTAVLVVNEDMKKINTLVISHLPHGPTATFRLSNVTPRRKIRGLKH-KGIEPGVVPHLILNRFMTRLGRRVERILGALFPAASRGPPQPHCRTVVFHNQRDFIFFRHYRYQHKRDRFGQEEETDTTGTSVTGLNDRVVTNEVGPRFTLKLRSIQVGTFDSQFGDYEWV 299

[Close]

BLAST of Ribosome production factor 1 vs. TrEMBL
Match: A0A0R3UAJ6 (Brix domain-containing protein OS=Mesocestoides corti OX=53468 GN=MCOS_LOCUS3945 PE=4 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 3.587e-54
Identity = 103/298 (34.56%), Postives = 169/298 (56.71%), Query Frame = 1

Query:   58 QKTMSKHHEKNLAIKAKKEKSKLQRKARIERKKAGIVLE-PKTIESMSTYKTPVVSSDNKEMSEVLEKDELSFIINNNTEPKVLITSSIKGSPRLHGFCIEFASVIPQAEYCNRKNLQVKNIVKQAKDNSFTAVIIIGENDKIIDSMKIYCLPDGPTSNFRLSHAYLRSEHKNTKHFSGLENINPQVCLLNFKTMMGLRLSRIFLSLFPSKNALDAHSHNRNITFKNGRDFIFFRHHRFQIKESGQ-----------------KDKASMNEVGPRFSLRLESLHKGLFENS-PDFEYI 894
            +K  +KHH + +  K + +++K Q++ R ERKK+G     P T+E++ T    ++  D+ +     E DELS I  N  EPK+L+T S +  P+  GFC E A VIP      R +L +K ++ ++ +  FTA+++I E+ K ++++ +  LPDGPT+ FRL++   R      K+    E + P + L  F T +GLR+ RI  +LFPS +      H R + F N RDFIFFRH+R+Q + +                    D+ ++NEVGPRF+L+L+S+ +G F++   D+E++
Sbjct:    3 RKETTKHHAREINQKERTKRAKEQKQRRKERKKSGKPAGIPHTLETLRTPDETIIPKDDADFQHEEEHDELSRIYANKVEPKLLLTHSDRACPKTLGFCKELARVIPNTTLLPRWHLPLKKLIPKSIEQGFTALLVINEDMKKMNTLIVSHLPDGPTATFRLTNVTPRRMLCGLKNRGIEEGVIPHLILNRFMTSLGLRVERILGALFPSGSRGPPQPHCRTVVFHNQRDFIFFRHYRYQHRRNRDAVENTNEDPELDTLDEPADRVALNEVGPRFTLKLKSIQRGTFDSQFGDYEWV 300

[Close]

BLAST of Ribosome production factor 1 vs. TrEMBL
Match: A0A183QDN7 (Brix domain-containing protein OS=Schistosoma rodhaini OX=6188 PE=4 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 3.873e-54
Identity = 106/299 (35.45%), Postives = 173/299 (57.86%), Query Frame = 1

Query:   58 QKTMSKHHEKNLAIKAKKEKSKLQRKARIERKKAGIVLE-PKTIESMSTYKTPVVSSDNKEMSEVLEKDELSFIINNNTEPKVLITSSIKGSPRLHGFCIEFASVIPQAEYCNRKNLQVKNIVKQAKDNSFTAVIIIGENDKIIDSMKIYCLPDGPTSNFRLSHAYLRSEHKNTKHFSGLE-NINPQVCLLNFKTMMGLRLSRIFLSLFPSKNALDAHSHNRNITFKNGRDFIFFRHHRF---------------QIKESGQ--KDKASMNEVGPRFSLRLESLHKGLFENS-PDFEYI 894
            +K  ++HH +++  K + +K+K +R  R +RK++G     P+T+ES+ T    +V  D++E+    E DE S I N    PK+L+T S +  PR  GFC E + VIP  +   R +L +K I+  A +  FT +II+ E+ K I+++ +  LP+GPT+ FRL++  LR E ++ K    +E N+ P +    F T +GLR  RI  SLFP+++ L    H+R I F N RD+IFFRH+R+               + K  G+   +  +MNEVGP+F+L+L S+  G F++   ++E++
Sbjct:    4 RKETTRHHLRDIIHKERIQKAKERRIKRKQRKESGAPAGIPQTLESLRTVDETIVPKDDEEVVIEHETDEFSSIFNGEITPKILLTHSDRVCPRTIGFCKELSMVIPNVQLVARWHLPLKKIIPMAIERQFTCLIIVNEDQKKINTLVVSHLPNGPTATFRLTNVLLRREMRSAKKVKYIESNVIPHLITTRFMTRLGLRTERILSSLFPNESRLPPQPHSRTIVFHNQRDYIFFRHYRYIHRNTTNAHNDDDDDENKNEGKHNTENITMNEVGPKFTLKLRSIQLGTFDSQYGNYEWV 302

[Close]

BLAST of Ribosome production factor 1 vs. TrEMBL
Match: A0A1R2D2D4 (Brix domain-containing protein OS=Stentor coeruleus OX=5963 GN=SteCoe_1200 PE=4 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 6.469e-54
Identity = 111/284 (39.08%), Postives = 167/284 (58.80%), Query Frame = 1

Query:   64 TMSKHHEKNLAIKAKKEKSKLQRKAR----IERKKAGIV-LEPKTIESMSTYKTPVVSSDNKEMSEVLEKDELSFIINNNTEPKVLITSSIKGSPRLHGFCIEFASVIPQAEYCNRKNLQVKNIVKQAKDNSFTAVIIIGENDKIIDSMKIYCLPDGPTSNFRLSHAYLRSEHKNTKHFSGLENINPQVCLLNFKTMMGLRLSRIFLSLFPSKNALDAHSHNRNITFKNGRDFIFFRHHRFQIKESGQKDKASMNEVGPRFSLRLESLHKGLFE-NSPDFEYIY 897
             M+K  +  L +K K E  K ++K R     ERK  G+  L+PKTIESM   +  +V  DNKE+      DE +   +   EPK+++T+  K S +L  FC EF  VIP  E+  R++  +K+I++ AK+  +T ++I  E +K  + + I  LPDGPT++F++S  + R E  N  + +G    NP++ L NF   +G R++R+F++LFP K           +TFKN RDFIFFRHHR+  K  GQ  K ++ EVGPR +L+L SL +G FE  +  FE++Y
Sbjct:   20 VMNKSRKIQLMLKMKFELRKQKKKDRELRKKERKIKGLAPLQPKTIESMRVPEDSIVLEDNKEVKIDEAIDEFAKHFSGEIEPKIILTTKKKPSSKLIDFCQEFIGVIPNLEFYERRDFLIKDIIEYAKNREYTDLLIFNERNKEPEGLWIIHLPDGPTAHFKVSSTWKRKEIPNHGNPTGY---NPELILKNFDARLGQRVARMFMALFPQKPEFRGRC---VVTFKNQRDFIFFRHHRYIFKNEGQ--KIALQEVGPRMTLKLRSLQEGAFEVKNSKFEFLY 295

[Close]

BLAST of Ribosome production factor 1 vs. TrEMBL
Match: A0A3Q0KP26 (U3 small nucleolar ribonucleoprotein protein imp4, putative OS=Schistosoma mansoni OX=6183 PE=4 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 1.182e-53
Identity = 104/299 (34.78%), Postives = 171/299 (57.19%), Query Frame = 1

Query:   58 QKTMSKHHEKNLAIKAKKEKSKLQRKARIERKKAGIVLE-PKTIESMSTYKTPVVSSDNKEMSEVLEKDELSFIINNNTEPKVLITSSIKGSPRLHGFCIEFASVIPQAEYCNRKNLQVKNIVKQAKDNSFTAVIIIGENDKIIDSMKIYCLPDGPTSNFRLSHAYLRSEHKNTKHFSGLE-NINPQVCLLNFKTMMGLRLSRIFLSLFPSKNALDAHSHNRNITFKNGRDFIFFRHHRFQIKESGQK-----------------DKASMNEVGPRFSLRLESLHKGLFENS-PDFEYI 894
            +K  ++HH +++  K + +K+K +R  R +RK++G     P+T+ES+ T    +V  D++E+    E DE S I N    PK+L+T S +  PR  GFC E + VIP  +   R +L +K I+  A +  FT +II+ E+ K I+++ +  LP+GPT+ FRL++  LR E ++ K    +E N+ P +    F T +GLR  RI  SLFP+++ L    H+R I F N RD+IFFRH+R+  + +                    +  +MNEVGP+F+L+L S+  G F++   ++E++
Sbjct:    4 RKETTRHHLRDIIHKERIQKAKERRIKRKQRKESGAPAGIPQTLESLRTVDETIVPKDDEEVVIEHETDEFSSIFNGEITPKILLTHSDRVCPRTIGFCKELSMVIPNVQLVARWHLPLKKIIPMAIERQFTCLIIVNEDQKKINTLVVSHLPNGPTATFRLTNVLLRREMRSAKKVKYIESNVIPHLITTRFMTRLGLRTERILSSLFPNESRLPPQPHSRTIVFHNQRDYIFFRHYRYIHRNTTNAHNDDDDDKNENEGKHNTENITMNEVGPKFTLKLRSIQLGTFDSQYGNYEWV 302

[Close]

BLAST of Ribosome production factor 1 vs. Ensembl Cavefish
Match: rpf1 (ribosome production factor 1 homolog [Source:NCBI gene;Acc:103031954])

HSP 1 Score: 160.999 bits (406), Expect = 2.159e-46
Identity = 101/283 (35.69%), Postives = 153/283 (54.06%), Query Frame = 1

Query:   91 LAIKAKKEKSKLQRKARIERKKAGIVLE--------PKTIESMSTYKTPVVSSDNKEMSEVLEKDELSFIINNNTEPKVLITSSIKGSPRLHGFCIEFASVIPQAEYCNRKNLQVKNIVKQAKDNSFTAVIIIGENDKIIDSMKIYCLPDGPTSNFRLSHAYLRSEHKN-----TKHFSGLENINPQVCLLNFKTMMGLRLSRIFLSLFPSKNALDAHSHNRNITFKNGRDFIFFRHHRFQIKESGQKDKASMNEVGPRFSLRLESLHKGLFENS-PDFEYIY 897
            + +K K+EK KL+   R +R+K    L         PKTIE+   Y    V  +++E++     DE S   N  T PKVLIT+S +   R   FC + ASV+P A    R+ L +K I+ Q     FT +++I E+ K+ + M +  LPDGPT++F++S   LR E K      T+H       +P+V L NF T +G  + R+F +LFP           +  TF N RDFIFFR HR+  K    + K  + E+GPRF+++L SL KG F++   ++E+++
Sbjct:   74 MFMKLKQEKRKLKLDLRKKRRKEREALGDKAPPKEVPKTIENQRVYDETTVDPEDEEVAYDEGTDEFSAYFNKLTNPKVLITTSDRPRGRTVRFCEQLASVVPNAHVYYRRGLALKRIIPQCVSRDFTYLMVINEDRKVPNGMVLCHLPDGPTAHFKVSSVRLRKEMKRRGKEPTEH-------HPEVILNNFTTRLGHSIGRMFAALFPQDPQFTG---RQAATFHNQRDFIFFRFHRYIFK---NEKKVGIQELGPRFTMKLRSLQKGTFDSKYGEYEWVH 343

[Close]

BLAST of Ribosome production factor 1 vs. Ensembl Cavefish
Match: rpf1 (ribosome production factor 1 homolog [Source:NCBI gene;Acc:103031954])

HSP 1 Score: 137.117 bits (344), Expect = 1.419e-37
Identity = 87/240 (36.25%), Postives = 127/240 (52.92%), Query Frame = 1

Query:   91 LAIKAKKEKSKLQRKARIERKKAGIVLE--------PKTIESMSTYKTPVVSSDNKEMSEVLEKDELSFIINNNTEPKVLITSSIKGSPRLHGFCIEFASVIPQAEYCNRKNLQVKNIVKQAKDNSFTAVIIIGENDKIIDSMKIYCLPDGPTSNFRLSHAYLRSEHKN-----TKHFSGLENINPQVCLLNFKTMMGLRLSRIFLSLFPSKNALDAHSHNRNITFKNGRDFIFFRHHRF 771
            + +K K+EK KL+   R +R+K    L         PKTIE+   Y    V  +++E++     DE S   N  T PKVLIT+S +   R   FC + ASV+P A    R+ L +K I+ Q     FT +++I E+ K+ + M +  LPDGPT++F++S   LR E K      T+H       +P+V L NF T +G  + R+F +LFP        +  +  TF N RDFIFFR HR+
Sbjct:   74 MFMKLKQEKRKLKLDLRKKRRKEREALGDKAPPKEVPKTIENQRVYDETTVDPEDEEVAYDEGTDEFSAYFNKLTNPKVLITTSDRPRGRTVRFCEQLASVVPNAHVYYRRGLALKRIIPQCVSRDFTYLMVINEDRKVPNGMVLCHLPDGPTAHFKVSSVRLRKEMKRRGKEPTEH-------HPEVILNNFTTRLGHSIGRMFAALFPQDPQF---TGRQAATFHNQRDFIFFRFHRY 303

[Close]

BLAST of Ribosome production factor 1 vs. Ensembl Cavefish
Match: imp4 (IMP U3 small nucleolar ribonucleoprotein 4 [Source:ZFIN;Acc:ZDB-GENE-040718-474])

HSP 1 Score: 96.2857 bits (238), Expect = 1.204e-22
Identity = 66/202 (32.67%), Postives = 98/202 (48.51%), Query Frame = 1

Query:  292 EPKVLITSSIKGSPRLHGFCIEFASVIPQAEYCNRKNLQVKNIVKQAKDNSFTAVIIIGENDKIIDSMKIYCLPDGPTSNFRLSHAYLRSEHKNTKHFSGLENINPQVCLLNFKTMMGLRLSRIFLSLFPSKNALDAHSHNRNITFKNGRDFIFFRHHRFQIKESGQKDKASMNEVGPRFSLRLESLHKGLFEN--SPDFEY 891
            +PKV++T+S   S RL  F  E   + P A+  NR N +V  +V   K N  T ++II E     D + +  LP GPT+ F L +  +R    +      +    P +   NF + +G R+S I   LFP    +      R ITF N  DFI FR H    K++  ++   + EVGPRF ++L  +  G  EN  + D E+
Sbjct:   80 DPKVMVTTSRDPSSRLKMFAKEVKLMFPGAQRMNRGNHEVNTLVHACKANGVTDLVIIQETRGQPDGLIVCHLPFGPTAYFTLFNVVMRH---DIPDIGTMSEAFPHLIFHNFSSRLGRRVSNILKYLFP----VPKEESRRVITFANKDDFISFRWHH-TYKKTDHRN-VELTEVGPRFEMKLFMIKLGTLENESTADVEW 272

[Close]

BLAST of Ribosome production factor 1 vs. Ensembl Cavefish
Match: imp4 (IMP U3 small nucleolar ribonucleoprotein 4 [Source:ZFIN;Acc:ZDB-GENE-040718-474])

HSP 1 Score: 93.5893 bits (231), Expect = 6.196e-22
Identity = 61/183 (33.33%), Postives = 91/183 (49.73%), Query Frame = 1

Query:  292 EPKVLITSSIKGSPRLHGFCIEFASVIPQAEYCNRKNLQVKNIVKQAKDNSFTAVIIIGENDKIIDSMKIYCLPDGPTSNFRLSHAYLRSEHKNTKHFSGLENINPQVCLLNFKTMMGLRLSRIFLSLFPSKNALDAHSHNRNITFKNGRDFIFFRHHRFQIKESGQKDKASMNEVGPRFSLR 840
            +PKV++T+S   S RL  F  E   + P A+  NR N +V  +V   K N  T ++II E     D + +  LP GPT+ F L +  +R    +      +    P +   NF + +G R+S I   LFP    +      R ITF N  DFI FRHH +  K++  ++   + EVGPRF ++
Sbjct:   82 DPKVMVTTSRDPSSRLKMFAKEVKLMFPGAQRMNRGNHEVNTLVHACKANGVTDLVIIQETRGQPDGLIVCHLPFGPTAYFTLFNVVMRH---DIPDIGTMSEAFPHLIFHNFSSRLGRRVSNILKYLFP----VPKEESRRVITFANKDDFISFRHHTY--KKTDHRN-VELTEVGPRFEMK 254

[Close]

BLAST of Ribosome production factor 1 vs. Ensembl Yeast
Match: RPF1 (Protein involved in assembly and export of the large ribosomal subunit; nucleolar protein; constituent of 66S pre-ribosomal particles; contains a sigma(70)-like motif, which is thought to bind RNA [Source:SGD;Acc:S000001130])

HSP 1 Score: 102.449 bits (254), Expect = 8.381e-26
Identity = 81/288 (28.12%), Postives = 147/288 (51.04%), Query Frame = 1

Query:   43 KMKGEQKTMSKHHEKNLAIKAKKEKSKLQRKARIERKKAGIVLEPK-------TIESMSTYKTPVVSSDNKEMSEVLEKDEL--SFIINNNTEPKVLITSSIKGSPRLHGFCIEFASVIPQAEYCNRK-NLQVKNIVKQAKDNSFTAVIIIGENDKIIDSMKIYCLPDGPTSNFRLSHAYLRSEHKNTKHFSGLENINPQVCLLNFKTMMGLRLSRIFLSLFPSKNALDAHSHNRNITFKNGRDFIFFRHHRFQIKESGQKDKASMNEVGPRFSLRLESLHKGLFENS 876
            K+K ++      HEKN      KE+  ++RK   E ++   + E +       TIE+   Y   +    NKE+    ++D+L   F  N+N  PK+ +T+++      + F      ++P   +  RK   ++K I       +FT ++II E+ K +  +    LP+GPT  F+LS +++  + K   H     +I P++ L NF+T +G  + R+F S+ P    ++     + IT  N RD+IFFR HR+  K++   ++  + E+GP+F+L+L+ L +G+ E +
Sbjct:   12 KLKRQEIFADIKHEKN------KERHTMRRKRAKEERENPELREQRLKENVTQTIENTRVYDETI----NKEVEG--DEDDLMRYFNSNSNEPPKIFLTTNVNAKKSAYEFANILIEILPNVTFVKRKFGYKLKEISDICIKRNFTDIVIINEDKKKVTGLTFIHLPEGPTFYFKLS-SFVEVK-KIVGHGRPTSHI-PELILNNFQTRLGQTVGRLFQSILPQNPDIEGR---QVITLHNQRDYIFFRRHRYVFKDN---ERVGLQELGPQFTLKLKRLQRGIKEET 278

[Close]

BLAST of Ribosome production factor 1 vs. Ensembl Yeast
Match: IMP4 (Component of the SSU processome; SSU processome is required for pre-18S rRNA processing; interacts with Mpp10p; member of a superfamily of proteins that contain a sigma(70)-like motif and associate with RNAs [Source:SGD;Acc:S000005019])

HSP 1 Score: 98.2117 bits (243), Expect = 2.502e-24
Identity = 69/220 (31.36%), Postives = 104/220 (47.27%), Query Frame = 1

Query:  235 EMSEVLEKDELSFIINNNTEPKVLITSSIKGSPRLHGFCIEFASVIPQAEYCNRKNLQVKNIVKQAKDNSFTAVIIIGENDKIIDSMKIYCLPDGPTSNFRLSHAYLRSEHKNTKHFSGLENINPQVCLLNFKTMMGLRLSRIFLSLFPSKNALDAHSHNRNITFKNGRDFIFFRHHRFQIKESGQKDKASMNEVGPRFSLRLESLHKGLFEN-SPDFEY 891
            E ++ L+ D+     +   +P++++T+S   S RL  F  E   + P A   NR N  + N+V   K +  T ++++ E+  +  S+ I   P GPT+ F L +  +R +  N  + S    +NP +   NF T +G R+  I   LF   NA       R ITF N  DFI  R H +     G      + EVGPRF +RL  L  G  EN   D E+
Sbjct:   66 EEADDLQVDDEYAATSGIMDPRIIVTTSRDPSTRLSQFAKEIKLLFPNAVRLNRGNYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDIINAGNQS---EVNPHLIFDNFTTALGKRVVCILKHLF---NAGPKKDSERVITFANRGDFISVRQHVYVRTREG----VEIAEVGPRFEMRLFELRLGTLENKDADVEW 275

[Close]

BLAST of Ribosome production factor 1 vs. Ensembl Nematostella
Match: EDO43977 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RX66])

HSP 1 Score: 141.354 bits (355), Expect = 4.656e-40
Identity = 87/247 (35.22%), Postives = 134/247 (54.25%), Query Frame = 1

Query:  175 PKTIESMSTYKTPVVSSDNKEMSEVLEKDELSFIINNNTEPKVLITSSIKGSPRLHGFCIEFASVIPQAEYCNRKNLQVKNIVKQAKDNSFTAVIIIGENDKIIDSMKIYCLPDGPTSNFRLSHAYL----RSEHKNTKHFSGLENINPQVCLLNFKTMMGLRLSRIFLSLFPSKNALDAHSHNRN-ITFKNGRDFIFFRHHRFQIKESGQKDKASMNEVGPRFSLRLESLHKGLFENS-PDFEYIY 897
            P+TIE+       +V   ++E+ +    DELS+       PKVLITSS +       F  E   VIP +E   RK   +K I+ QA+   +TA+III E+ K  +S+ +  +PDGPT++F+LS   L    R   K T H        P++ L NF T +G  ++R+  +LFP     D     R  +TF N RDF+FFR HR+  K +    +  + E+GPRF+L+L S+ +G F++   ++E+I+
Sbjct:   37 PRTIENTRVQDETMVDPLDEEVLQDESTDELSYYFKREVTPKVLITSSDRPKHPTVQFMEELCRVIPNSEVRQRKGRDLKKIIPQAQAKGYTAMIIINEDHKKPNSIVVTHIPDGPTAHFKLSSVRLPKEIRGHGKMTSH-------KPELILNNFNTRLGHSVARVLAALFP----YDPQFKGRQCVTFHNQRDFVFFRRHRYIFKNA---KRVGLQELGPRFTLKLRSIQRGTFDSKFGEYEWIH 269

[Close]

BLAST of Ribosome production factor 1 vs. Ensembl Nematostella
Match: EDO45425 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RT92])

HSP 1 Score: 99.7525 bits (247), Expect = 1.930e-24
Identity = 63/190 (33.16%), Postives = 95/190 (50.00%), Query Frame = 1

Query:  292 EPKVLITSSIKGSPRLHGFCIEFASVIPQAEYCNRKNLQVKNIVKQAKDNSFTAVIIIGENDKIIDSMKIYCLPDGPTSNFRLSHAYLRSEHKNTKHFSGLENINPQVCLLNFKTMMGLRLSRIFLSLFPSKNALDAHSHNRNITFKNGRDFIFFRHHRFQIKESGQKDKASMNEVGPRFSLRLESLHKG 861
            +PK++IT+S   S RL  F  E   V P ++  NR N  +K +V   K N  T +II+ E+    D + +  LP GPT+ F LS   +R    +      +    P +   NFK+ +G R+  I   LFP    +      R +TF N  D+I FRHH ++ K  GQ     ++EVGPRF +++  +  G
Sbjct:   82 DPKIMITTSHNPSSRLKQFAKEMRLVFPNSQRLNRGNYVMKQLVDACKANDVTDLIIVHEHRGEPDGLVVCHLPFGPTAYFTLSSTVMRH---DIPKIGTMSEAYPHLIFHNFKSKLGDRVRNILKYLFP----VPKEDTRRVVTFANQSDYISFRHHTYK-KVDGQ---IELSEVGPRFEMKVYEIKLG 260

[Close]

BLAST of Ribosome production factor 1 vs. Ensembl Medaka
Match: rpf1 (ribosome production factor 1 homolog [Source:NCBI gene;Acc:101159425])

HSP 1 Score: 148.288 bits (373), Expect = 1.739e-41
Identity = 91/248 (36.69%), Postives = 142/248 (57.26%), Query Frame = 1

Query:  175 PKTIESMSTYKTPVVSSDNKEMSEVLEKDELSFIINNNTEPKVLITSSIKGSPRLHGFCIEFASVIPQAEYCNRKNLQVKNIVKQAKDNSFTAVIIIGENDKIIDSMKIYC-LPDGPTSNFRLSHAYLRSEHKN-----TKHFSGLENINPQVCLLNFKTMMGLRLSRIFLSLFPSKNALDAHSHNRNI-TFKNGRDFIFFRHHRFQIKESGQKDKASMNEVGPRFSLRLESLHKGLFENS-PDFEYI 894
            PKTIE+   +    V  +++E++     DE S   N  T P+VLIT+S +   +   FC + ASVIP A    R+ L +K I+ Q    +FT ++++ E D+++ +  + C LPDGPT++F++S   LR E K      T+H       +P+V L NF T +G  ++R+F +LFP     D +   R + TF N RDFIFFR HR+  K    + K  + E+GPRF+L+L SL KG F++   ++E++
Sbjct:  110 PKTIENQRVFDETTVDPEDEEIAFDEGTDEFSAYFNRLTNPQVLITTSDRPRGKTVRFCEQLASVIPNAHVYYRRGLALKKIIPQCVARNFTYLMVVNE-DRLVPNGLVLCHLPDGPTAHFKVSSVRLRKEIKRRGKDPTEH-------SPEVILNNFSTRLGHTIARLFAALFPQ----DPNFVGRQVATFHNQRDFIFFRFHRYIFK---NEKKVGIQELGPRFTLKLRSLQKGTFDSKYGEYEWV 342

[Close]

BLAST of Ribosome production factor 1 vs. Ensembl Medaka
Match: imp4 (IMP U3 small nucleolar ribonucleoprotein 4 [Source:NCBI gene;Acc:101167876])

HSP 1 Score: 100.523 bits (249), Expect = 3.241e-24
Identity = 62/194 (31.96%), Postives = 98/194 (50.52%), Query Frame = 1

Query:  292 EPKVLITSSIKGSPRLHGFCIEFASVIPQAEYCNRKNLQVKNIVKQAKDNSFTAVIIIGENDKIIDSMKIYCLPDGPTSNFRLSHAYLRSEHKNTKHFSGLENINPQVCLLNFKTMMGLRLSRIFLSLFPSKNALDAHSHNRNITFKNGRDFIFFRHHRFQIKESGQKDKASMNEVGPRFSLRLESLHKGLFEN 873
            +PK+++T+S   S RL  F  E   + P A+  NR N ++  +V+  K N+ T ++I+ E     D + +  LP GPT+ F L +  +R    +      +    P +   NF + +G R+S I   LFP    +      R ITF N  DFI FRHH +  K++  ++   + EVGPRF ++L  +  G  EN
Sbjct:   82 DPKIMVTTSRDPSSRLKMFAKEVKLMFPGAQRMNRGNHELPTLVRACKANNVTDLVIVHETRGQPDGLVVCHLPFGPTAYFTLYNVVMRH---DVPDIGTMSEAYPHLIFHNFTSRLGRRVSSILKYLFP----VPKDDSRRVITFANQDDFISFRHHTY--KKTDHRN-VELTEVGPRFEMKLYMIKLGTLEN 265

[Close]

BLAST of Ribosome production factor 1 vs. Planmine SMEST
Match: SMESG000035174.1 (SMESG000035174.1)

HSP 1 Score: 584.719 bits (1506), Expect = 0.000e+0
Identity = 284/285 (99.65%), Postives = 284/285 (99.65%), Query Frame = 1

Query:   46 MKGEQKTMSKHHEKNLAIKAKKEKSKLQRKARIERKKAGIVLEPKTIESMSTYKTPVVSSDNKEMSEVLEKDELSFIINNNTEPKVLITSSIKGSPRLHGFCIEFASVIPQAEYCNRKNLQVKNIVKQAKDNSFTAVIIIGENDKIIDSMKIYCLPDGPTSNFRLSHAYLRSEHKNTKHFSGLENINPQVCLLNFKTMMGLRLSRIFLSLFPSKNALDAHSHNRNITFKNGRDFIFFRHHRFQIKESGQKDKASMNEVGPRFSLRLESLHKGLFENSPDFEYIYD 900
            MKGEQKTMSKHHEKNLAIKAKKEKSKLQRKARIERKKAGIVLEPKTIESMSTYKTPVVSSDNKEMSEVLEKDELSFIINNNTEPKVLITSSIKGSPRLHGFCIEFASVIPQAEYCNRKN QVKNIVKQAKDNSFTAVIIIGENDKIIDSMKIYCLPDGPTSNFRLSHAYLRSEHKNTKHFSGLENINPQVCLLNFKTMMGLRLSRIFLSLFPSKNALDAHSHNRNITFKNGRDFIFFRHHRFQIKESGQKDKASMNEVGPRFSLRLESLHKGLFENSPDFEYIYD
Sbjct:    1 MKGEQKTMSKHHEKNLAIKAKKEKSKLQRKARIERKKAGIVLEPKTIESMSTYKTPVVSSDNKEMSEVLEKDELSFIINNNTEPKVLITSSIKGSPRLHGFCIEFASVIPQAEYCNRKNFQVKNIVKQAKDNSFTAVIIIGENDKIIDSMKIYCLPDGPTSNFRLSHAYLRSEHKNTKHFSGLENINPQVCLLNFKTMMGLRLSRIFLSLFPSKNALDAHSHNRNITFKNGRDFIFFRHHRFQIKESGQKDKASMNEVGPRFSLRLESLHKGLFENSPDFEYIYD 285

[Close]

BLAST of Ribosome production factor 1 vs. Planmine SMEST
Match: SMESG000020293.1 (SMESG000020293.1)

HSP 1 Score: 75.485 bits (184), Expect = 2.251e-15
Identity = 69/226 (30.53%), Postives = 100/226 (44.25%), Query Frame = 1

Query:  250 LEKDELSFIINNNTEPKVLITSSIKGSPRLHGFCIEFASVIPQAEYCNRKNLQVKNIVKQAKDNSFTAVIIIGENDKIIDSMKIYCLPDGPTSNFRLSHAYLRS----EHKNTKHFSGLENINPQVCLLNFK---TMMGLRLSRIFLSLFPSKNALDAHSHNRNITFKNGRDFIFFRH---HRFQIKESGQKDKASMNEVGPRFSLRLESLHKGLFENSPDFEYIY 897
            +E DE  +      +PKVLIT++   S  L  F  E   VIP ++  NR N  V+ I  +      T +II+ E   +   + I   P GPT  F L    LR     E  N     G   +  Q   L FK   + +G RL  I L LFP    +     NR + F    D I F++    +   KE+G+  K  + + GP+F+L+L  L +G+ +N    E  Y
Sbjct:   68 IEDDEYQWA--GVEDPKVLITTARDPSSNLRQFSKELHHVIPNSQRMNRGNTTVEIITNKCLKEQITDLIILEEVRGVPKKLTISHFPHGPTVVFSLVDVVLRHQMDLETSNKSGVKGKRKLPTQYPRLLFKGCTSPLGKRLQNILLYLFP----VPKPDSNRIVCFYEQEDHIVFKNCTCTKENSKETGK--KLIIEDHGPQFTLQLFKLFRGVLQNEKTSEVEY 285

The following BLAST results are available for this feature:

BLAST of Ribosome production factor 1 vs. Ensembl Human
BLAST of Ribosome production factor 1 vs. Ensembl Celegans
BLAST of Ribosome production factor 1 vs. Ensembl Fly
BLAST of Ribosome production factor 1 vs. Ensembl Zebrafish
BLAST of Ribosome production factor 1 vs. Ensembl Xenopus
BLAST of Ribosome production factor 1 vs. Ensembl Mouse
BLAST of Ribosome production factor 1 vs. UniProt/SwissProt
BLAST of Ribosome production factor 1 vs. TrEMBL
BLAST of Ribosome production factor 1 vs. Ensembl Cavefish
BLAST of Ribosome production factor 1 vs. Ensembl Sea Lamprey
BLAST of Ribosome production factor 1 vs. Ensembl Yeast
BLAST of Ribosome production factor 1 vs. Ensembl Nematostella
BLAST of Ribosome production factor 1 vs. Ensembl Medaka
BLAST of Ribosome production factor 1 vs. Planmine SMEST

BLAST of Ribosome production factor 1 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
RPF1	7.809e-39	34.30	ribosome production factor 1 homolog [Source:HGNC ...	[more]
IMP4	7.597e-23	31.86	IMP U3 small nucleolar ribonucleoprotein 4 [Source...	[more]
IMP4	1.782e-22	28.52	IMP U3 small nucleolar ribonucleoprotein 4 [Source...	[more]
IMP4	3.493e-22	31.86	IMP U3 small nucleolar ribonucleoprotein 4 [Source...	[more]
IMP4	4.652e-19	32.22	IMP U3 small nucleolar ribonucleoprotein 4 [Source...	[more]

BLAST of Ribosome production factor 1 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 2


Match Name	E-value	Identity	Description
F44G4.1	1.366e-44	37.40	Brix domain-containing protein F44G4.1 [Source:Un...	[more]
ZK795.3	1.344e-22	31.61	Brix domain-containing protein ZK795.3 [Source:Un...	[more]

BLAST of Ribosome production factor 1 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 2


Match Name	E-value	Identity	Description
CG6712	2.004e-39	35.74	gene:FBgn0032408 transcript:FBtr0080364	[more]
CG11920	4.198e-28	33.99	gene:FBgn0039274 transcript:FBtr0084769	[more]

BLAST of Ribosome production factor 1 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
rpf1	4.028e-44	37.50	ribosome production factor 1 homolog [Source:NCBI ...	[more]
rpf1	4.621e-44	37.50	ribosome production factor 1 homolog [Source:NCBI ...	[more]
rpf1	6.107e-44	37.50	ribosome production factor 1 homolog [Source:NCBI ...	[more]
imp4	1.652e-25	32.18	IMP U3 small nucleolar ribonucleoprotein 4 [Source...	[more]
rpf1	2.255e-21	37.88	ribosome production factor 1 homolog [Source:NCBI ...	[more]

BLAST of Ribosome production factor 1 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ffar4	1.233e-41	36.18	free fatty acid receptor 4 [Source:Xenbase;Acc:XB-...	[more]
ffar4	1.319e-41	36.18	free fatty acid receptor 4 [Source:Xenbase;Acc:XB-...	[more]
ffar4	2.195e-41	36.18	free fatty acid receptor 4 [Source:Xenbase;Acc:XB-...	[more]
ENSXETT00000024813.1	2.228e-10	26.85	pep primary_assembly:Xenopus_tropicalis_v9.1:KV466...	[more]
ENSXETT00000024824.1	2.470e-10	28.15	pep primary_assembly:Xenopus_tropicalis_v9.1:KV466...	[more]

BLAST of Ribosome production factor 1 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 4


Match Name	E-value	Identity	Description
Rpf1	2.343e-39	34.30	ribosome production factor 1 homolog [Source:MGI S...	[more]
Imp4	1.163e-22	31.86	IMP4, U3 small nucleolar ribonucleoprotein [Source...	[more]
Rpf1	4.653e-19	37.50	ribosome production factor 1 homolog [Source:MGI S...	[more]
Rpf1	9.511e-11	32.35	ribosome production factor 1 homolog [Source:MGI S...	[more]

BLAST of Ribosome production factor 1 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|P54073\|YUY1_CAEEL	1.738e-43	37.40	Brix domain-containing protein F44G4.1 OS=Caenorha...	[more]
sp\|Q6IQU6\|RPF1_DANRE	2.529e-43	37.50	Ribosome production factor 1 OS=Danio rerio OX=795...	[more]
sp\|Q8AVP1\|RPF1_XENLA	1.337e-41	35.51	Ribosome production factor 1 OS=Xenopus laevis OX=...	[more]
sp\|Q7TND5\|RPF1_MOUSE	1.639e-38	34.30	Ribosome production factor 1 OS=Mus musculus OX=10...	[more]
sp\|Q5RJS9\|RPF1_RAT	1.837e-38	34.30	Ribosome production factor 1 OS=Rattus norvegicus ...	[more]

BLAST of Ribosome production factor 1 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A183SPU7	2.934e-57	37.25	Brix domain-containing protein OS=Schistocephalus ...	[more]
A0A0R3UAJ6	3.587e-54	34.56	Brix domain-containing protein OS=Mesocestoides co...	[more]
A0A183QDN7	3.873e-54	35.45	Brix domain-containing protein OS=Schistosoma rodh...	[more]
A0A1R2D2D4	6.469e-54	39.08	Brix domain-containing protein OS=Stentor coeruleu...	[more]
A0A3Q0KP26	1.182e-53	34.78	U3 small nucleolar ribonucleoprotein protein imp4,...	[more]

BLAST of Ribosome production factor 1 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 4


Match Name	E-value	Identity	Description
rpf1	2.159e-46	35.69	ribosome production factor 1 homolog [Source:NCBI ...	[more]
rpf1	1.419e-37	36.25	ribosome production factor 1 homolog [Source:NCBI ...	[more]
imp4	1.204e-22	32.67	IMP U3 small nucleolar ribonucleoprotein 4 [Source...	[more]
imp4	6.196e-22	33.33	IMP U3 small nucleolar ribonucleoprotein 4 [Source...	[more]

BLAST of Ribosome production factor 1 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Ribosome production factor 1 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 2


Match Name	E-value	Identity	Description
RPF1	8.381e-26	28.13	Protein involved in assembly and export of the lar...	[more]
IMP4	2.502e-24	31.36	Component of the SSU processome; SSU processome is...	[more]

BLAST of Ribosome production factor 1 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 2


Match Name	E-value	Identity	Description
EDO43977	4.656e-40	35.22	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO45425	1.930e-24	33.16	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of Ribosome production factor 1 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 2


Match Name	E-value	Identity	Description
rpf1	1.739e-41	36.69	ribosome production factor 1 homolog [Source:NCBI ...	[more]
imp4	3.241e-24	31.96	IMP U3 small nucleolar ribonucleoprotein 4 [Source...	[more]

BLAST of Ribosome production factor 1 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2


Match Name	E-value	Identity	Description
SMESG000035174.1	0.000e+0	99.65	SMESG000035174.1	[more]
SMESG000020293.1	2.251e-15	30.53	SMESG000020293.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30031315 ID=SMED30031315|Name=Ribosome production factor 1|organism=Schmidtea mediterranea sexual|type=transcript|length=962bp
ACAGAATTTGTTTAAATATTTACAATTATTTTAAGGATTTTTAAAATGAA
AGGTGAGCAAAAAACGATGTCTAAACACCATGAAAAAAATTTAGCAATTA
AAGCTAAAAAAGAGAAAAGCAAATTGCAGCGGAAAGCAAGAATAGAGCGT
AAAAAAGCAGGAATTGTTCTTGAACCCAAGACAATTGAGTCTATGAGTAC
TTATAAAACTCCTGTGGTATCGAGTGATAATAAAGAAATGTCAGAAGTTC
TAGAAAAGGACGAACTTTCTTTTATTATTAATAATAATACAGAACCTAAA
GTTCTTATTACATCTTCCATAAAAGGTAGTCCTAGACTCCATGGCTTCTG
TATTGAATTTGCATCGGTAATACCACAGGCTGAGTATTGTAATAGGAAAA
ATTTGCAAGTGAAAAACATTGTAAAACAAGCAAAAGATAATTCTTTTACG
GCTGTCATTATCATAGGTGAAAATGACAAAATAATTGATTCTATGAAAAT
TTATTGTTTACCCGATGGACCGACTTCAAATTTTCGATTATCTCATGCTT
ATTTGAGATCTGAACATAAGAATACGAAACACTTTTCAGGACTCGAAAAT
ATTAATCCTCAAGTTTGTTTATTAAATTTCAAAACGATGATGGGCCTAAG
ATTAAGCAGAATTTTCTTGAGTTTATTTCCATCTAAAAATGCCTTAGATG
CACATAGTCATAACAGAAATATCACATTTAAAAATGGTAGAGATTTTATA
TTTTTCAGACATCACAGATTCCAAATTAAGGAATCTGGTCAAAAAGATAA
AGCATCAATGAATGAAGTTGGTCCGAGATTTTCATTAAGATTAGAGTCTT
TACATAAAGGTTTATTCGAAAACAGTCCGGATTTTGAATATATTTATGAT
AGGCGTGAAAATAATAGTAACAGACGGCAGTTTAATAATTAATAAAATTT
TTGTTGAATTAG

protein sequence of SMED30031315-orf-1

>SMED30031315-orf-1 ID=SMED30031315-orf-1|Name=SMED30031315-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=299bp
MKGEQKTMSKHHEKNLAIKAKKEKSKLQRKARIERKKAGIVLEPKTIESM
STYKTPVVSSDNKEMSEVLEKDELSFIINNNTEPKVLITSSIKGSPRLHG
FCIEFASVIPQAEYCNRKNLQVKNIVKQAKDNSFTAVIIIGENDKIIDSM
KIYCLPDGPTSNFRLSHAYLRSEHKNTKHFSGLENINPQVCLLNFKTMMG
LRLSRIFLSLFPSKNALDAHSHNRNITFKNGRDFIFFRHHRFQIKESGQK
DKASMNEVGPRFSLRLESLHKGLFENSPDFEYIYDRRENNSNRRQFNN*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000429	neoblast
PLANA:0002109	X1 cell

Vocabulary: **INTERPRO**
Term	Definition
IPR007109	Brix
IPR004154	Anticodon-bd

Vocabulary: **biological process**
Term	Definition
GO:0000027	ribosomal large subunit assembly
GO:0000460	maturation of 5.8S rRNA
GO:0000470	maturation of LSU-rRNA
GO:0006364	rRNA processing
GO:0042254	ribosome biogenesis

Vocabulary: **molecular function**
Term	Definition
GO:0003723	RNA binding
GO:0019843	rRNA binding
GO:0042134	rRNA primary transcript binding

Vocabulary: **cellular component**
Term	Definition
GO:0005634	nucleus
GO:0005730	nucleolus
GO:0030687	preribosome, large subunit precursor

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 17..37
None	No IPR available	GENE3D	G3DSA:3.40.50.10480		coord: 84..264 e-value: 8.9E-12 score: 47.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR22734:SF3	RIBOSOME PRODUCTION FACTOR 1	coord: 8..296
None	No IPR available	PANTHER	PTHR22734	U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4	coord: 8..296
None	No IPR available	SUPERFAMILY	SSF52954	Class II aaRS ABD-related	coord: 83..272
IPR007109	Brix domain	SMART	SM00879	Brix_2	coord: 87..269 e-value: 4.5E-26 score: 102.6
IPR007109	Brix domain	PFAM	PF04427	Brix	coord: 93..266 e-value: 1.3E-19 score: 71.1
IPR007109	Brix domain	PROSITE	PS50833	BRIX	coord: 84..275 score: 32.995

Main menu

Ribosome production factor 1

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 2

Owlery

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