nuclear protein MDM1-like isoform X1
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30031309 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 12
Homology
BLAST of nuclear protein MDM1-like isoform X1 vs. Ensembl Human
Match: MDM1 (Mdm1 nuclear protein [Source:HGNC Symbol;Acc:HGNC:29917]) HSP 1 Score: 52.7582 bits (125), Expect = 2.141e-6 Identity = 28/89 (31.46%), Postives = 46/89 (51.69%), Query Frame = 1 Query: 979 HGKSKRFDTEYSANF---------DNKWKNLENELDKSREENEARQSNQQSKWFKEILELRKKAQEYRQRTRGTHFSREHLGEIFTKFN 1218 H + + ++EY A F W +++ N Q + + W+ E+ ELR+KA+ YR+R +GTHFSR+HL +I + N Sbjct: 253 HQRLGKVNSEYRAKFLSPAQYLYKAGAWTHVKG--------NMPNQGSLNAMWYAEVKELREKAEFYRKRVQGTHFSRDHLNQILSDSN 333
BLAST of nuclear protein MDM1-like isoform X1 vs. Ensembl Xenopus
Match: psmb7 (proteasome (prosome, macropain) subunit, beta type, 7 [Source:Xenbase;Acc:XB-GENE-946042]) HSP 1 Score: 50.8322 bits (120), Expect = 7.445e-6 Identity = 33/98 (33.67%), Postives = 51/98 (52.04%), Query Frame = 1 Query: 988 SKRFDTEYSANFDNKWKNLENELDKSREENEARQSNQQ----SKWFKEILELRKKAQEYRQRTRGTHFSREHLGEIFTKFNKSSIDDYQDNDHLSEQI 1269 +R +EY++NF + + L + R + + + + + W EI ELR+KA YR+R +GTHFSR HL +I + NK D N EQ+ Sbjct: 312 CRRIKSEYTSNFLSPSEYLYKDGAWVRAKKQMHEQDSHLPLGALWVAEINELREKADYYRRREQGTHFSRNHLNQILSVNNK--FWDVSSNSSSEEQV 407
BLAST of nuclear protein MDM1-like isoform X1 vs. Ensembl Mouse
Match: Mdm1 (transformed mouse 3T3 cell double minute 1 [Source:MGI Symbol;Acc:MGI:96951]) HSP 1 Score: 56.6102 bits (135), Expect = 9.126e-8 Identity = 29/81 (35.80%), Postives = 49/81 (60.49%), Query Frame = 1 Query: 979 HGKSKRFDTEYSANFDNKWKNLENELDKSR-EENEARQSNQQSKWFKEILELRKKAQEYRQRTRGTHFSREHLGEIFTKFN 1218 H + + ++EY A F + + +R +EN + Q + + W+ E+ ELR+KA+ YR+R +GTHFSR+HL +I + N Sbjct: 254 HQRLGKVNSEYRAKFLSPAQYFYKAGAWTRVKENLSNQGSLNAMWYAEVKELREKAESYRKRVQGTHFSRDHLNQIMSDSN 334
BLAST of nuclear protein MDM1-like isoform X1 vs. Ensembl Mouse
Match: Mdm1 (transformed mouse 3T3 cell double minute 1 [Source:MGI Symbol;Acc:MGI:96951]) HSP 1 Score: 56.6102 bits (135), Expect = 1.042e-7 Identity = 29/81 (35.80%), Postives = 49/81 (60.49%), Query Frame = 1 Query: 979 HGKSKRFDTEYSANFDNKWKNLENELDKSR-EENEARQSNQQSKWFKEILELRKKAQEYRQRTRGTHFSREHLGEIFTKFN 1218 H + + ++EY A F + + +R +EN + Q + + W+ E+ ELR+KA+ YR+R +GTHFSR+HL +I + N Sbjct: 299 HQRLGKVNSEYRAKFLSPAQYFYKAGAWTRVKENLSNQGSLNAMWYAEVKELREKAESYRKRVQGTHFSRDHLNQIMSDSN 379
BLAST of nuclear protein MDM1-like isoform X1 vs. UniProt/SwissProt
Match: sp|Q5ZMW6|MDM1_CHICK (Nuclear protein MDM1 OS=Gallus gallus OX=9031 GN=MDM1 PE=2 SV=1) HSP 1 Score: 62.003 bits (149), Expect = 1.216e-8 Identity = 41/118 (34.75%), Postives = 57/118 (48.31%), Query Frame = 1 Query: 943 HETMNPQRLHLPHGKSKRFDTEYSANF---------DNKWKNLENELDKSREENEARQSNQQSKWFKEILELRKKAQEYRQRTRGTHFSREHLGEIFTKFNKSSIDDYQDNDHLSEQI 1269 H + P LH GK +TEY + F D W + +S+ N+A Q+ S W+ E+ ELR +A+ YRQR GTHFSR HL ++ + N S+ D N E I Sbjct: 242 HISQKPLSLHTHRGK---MNTEYRSKFLSPAQYFYKDGAWSRI-----RSKVPNQASQNPLNSMWYMEVRELRARAKAYRQRIEGTHFSRYHLNQLLSDNN--SLWDVSSNSSSEEGI 349
BLAST of nuclear protein MDM1-like isoform X1 vs. UniProt/SwissProt
Match: sp|Q5PQN4|MDM1_RAT (Nuclear protein MDM1 OS=Rattus norvegicus OX=10116 GN=Mdm1 PE=1 SV=2) HSP 1 Score: 56.6102 bits (135), Expect = 6.091e-7 Identity = 29/81 (35.80%), Postives = 50/81 (61.73%), Query Frame = 1 Query: 979 HGKSKRFDTEYSANFDNKWKNLENELDKSR-EENEARQSNQQSKWFKEILELRKKAQEYRQRTRGTHFSREHLGEIFTKFN 1218 H + + ++EY A F + + L +R +E+ + Q + + W+ E+ ELR+KA+ YR+R +GTHFSR+HL +I + N Sbjct: 298 HQRLGKVNSEYRAKFLSPAQYLYKAGAWTRVKESLSHQGSLNAMWYAEVKELREKAESYRKRVQGTHFSRDHLNQIMSDSN 378
BLAST of nuclear protein MDM1-like isoform X1 vs. UniProt/SwissProt
Match: sp|Q5RC32|MDM1_PONAB (Nuclear protein MDM1 OS=Pongo abelii OX=9601 GN=MDM1 PE=2 SV=2) HSP 1 Score: 54.6842 bits (130), Expect = 2.392e-6 Identity = 56/204 (27.45%), Postives = 104/204 (50.98%), Query Frame = 1 Query: 631 TEYQTKYAWREPLAKQSQ---EHNKTSENQSKFDLKLKIYNNFL--SEYQQQFRPYEFVNENRFKRMMTAHEKNPTETHLQIIPDNRDHGRRAITPPPRLHYKDKLVASHETMNPQRLHLP--HGKSKRFDTEYSANFDNKWKNLENELDKSR-EENEARQSNQQSKWFKEILELRKKAQEYRQRTRGTHFSREHLGEIFTKFN 1218 +EYQ ++ W+ +K++ N+ N+S+F K N+ + +EY++ F+ V E + + + E ET + P+ + + I P +L + +L H+ P++ P H + + ++EY A F + + L +R + N Q + + W+ E+ ELR+KA+ YR+R +GTHFSR+HL +I + N Sbjct: 189 SEYQRQFVWK--TSKETAPAFSANQVFHNKSQFVPPFK-GNSIIHETEYKRNFKGLSPVKEPKLRNDL--RENRNLET---VSPEKKSN---KIDDPLKLEAEMELKDLHQ---PKKKLAPWKHQRLGKVNSEYRAKFLSPAQYLYKAGAWTRVKGNMPNQGSLNAMWYAEVKELREKAEFYRKRVQGTHFSRDHLNQILSDSN 378
BLAST of nuclear protein MDM1-like isoform X1 vs. TrEMBL
Match: A0A1S3H0L5 (serine/arginine repetitive matrix protein 1 OS=Lingula unguis OX=7574 GN=LOC106150973 PE=4 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 1.431e-16 Identity = 69/228 (30.26%), Postives = 112/228 (49.12%), Query Frame = 1 Query: 631 TEYQTKYAWREPLAKQSQEHNKTSENQSKFDLKLKIYNNF--LSEYQQQFRPY-EFV-------NENRFKRMMTAHE--KNPTETHLQIIPDNRDHGRRAITPPPRLHY----KDKLVASHETMNPQRLHLPHGKSKRFDTEYSANF---------DNKWKNL---------ENELDKSREENEARQSNQQSKWFKEILELRKKAQEYRQRTRGTHFSREHLGEIFTK 1212 +EYQ +++W++P+ + S DL +N +EY QF+P+ +F +EN + H+ ++ +E L++ PD R PP +H DK + E++NPQR+ PHGK + + +EY +NF D W+ ENE D + + + + WF E++ELRKKA+EYR+R +GTHFSREHL ++ + Sbjct: 202 SEYQKEFSWKKPVESVPLLQAEQVVYNSSMDLPPYKSDNIPRTTEYNNQFKPWTDFYKPVEPKKSENGPEGGRKKHKMKRSKSEAELRLSPDKR--------PPAGIHQVTSPDDKRLVK-ESLNPQRIFFPHGKYRNYRSEYHSNFRPPWKYTYEDGAWRGANPPHIMPVKENESD-AEAGQQPPPPSPGANWFAEVVELRKKAEEYRKRAQGTHFSREHLAQLLAQ 419
BLAST of nuclear protein MDM1-like isoform X1 vs. TrEMBL
Match: A0A1S3H4F2 (nuclear protein MDM1-like isoform X3 OS=Lingula unguis OX=7574 GN=LOC106151943 PE=4 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 3.070e-16 Identity = 69/227 (30.40%), Postives = 111/227 (48.90%), Query Frame = 1 Query: 631 TEYQTKYAWREPLAKQSQEHNKTSENQSKFDLKLKIYNNF--LSEYQQQFRPY-EFVNENRFKRMMTAHE---------KNPTETHLQIIPDNRDHGRRAITPPPRLHY----KDKLVASHETMNPQRLHLPHGKSKRFDTEYSANF---------DNKWKNLENELDKSREENEAR-QSNQQ-------SKWFKEILELRKKAQEYRQRTRGTHFSREHLGEIFTK 1212 +EYQ +++W++P+ + S DL +N +EY QF+P+ +F K+ E ++ +E L++ PD R PP +H DK + E++NPQR+ PHGK + + +EY +NF D W+ +ENE+ ++ QQ + WF E++ELRKKA+EYR+R +GTHFSREHL ++ + Sbjct: 216 SEYQKEFSWKKPVESVPLLQAEQVVYNSSMDLPPYKSDNIPRTTEYNNQFKPWTDFYKPVEPKKTENGPEGGRKKHKMKRSKSEAELRLSPDKR--------PPAGIHQVTSPDDKRLV-KESLNPQRIFFPHGKYRNYRSEYHSNFRPPWKYTYEDGAWRGANPPHIMPVKENESDPEAGQQPPPPSPGANWFAEVVELRKKAEEYRKRAQGTHFSREHLAQLLAQ 433
BLAST of nuclear protein MDM1-like isoform X1 vs. TrEMBL
Match: A0A1S3H3X5 (nuclear protein MDM1-like isoform X1 OS=Lingula unguis OX=7574 GN=LOC106151943 PE=4 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 3.453e-16 Identity = 69/227 (30.40%), Postives = 111/227 (48.90%), Query Frame = 1 Query: 631 TEYQTKYAWREPLAKQSQEHNKTSENQSKFDLKLKIYNNF--LSEYQQQFRPY-EFVNENRFKRMMTAHE---------KNPTETHLQIIPDNRDHGRRAITPPPRLHY----KDKLVASHETMNPQRLHLPHGKSKRFDTEYSANF---------DNKWKNLENELDKSREENEAR-QSNQQ-------SKWFKEILELRKKAQEYRQRTRGTHFSREHLGEIFTK 1212 +EYQ +++W++P+ + S DL +N +EY QF+P+ +F K+ E ++ +E L++ PD R PP +H DK + E++NPQR+ PHGK + + +EY +NF D W+ +ENE+ ++ QQ + WF E++ELRKKA+EYR+R +GTHFSREHL ++ + Sbjct: 250 SEYQKEFSWKKPVESVPLLQAEQVVYNSSMDLPPYKSDNIPRTTEYNNQFKPWTDFYKPVEPKKTENGPEGGRKKHKMKRSKSEAELRLSPDKR--------PPAGIHQVTSPDDKRLV-KESLNPQRIFFPHGKYRNYRSEYHSNFRPPWKYTYEDGAWRGANPPHIMPVKENESDPEAGQQPPPPSPGANWFAEVVELRKKAEEYRKRAQGTHFSREHLAQLLAQ 467
BLAST of nuclear protein MDM1-like isoform X1 vs. TrEMBL
Match: A0A1S3H5U0 (nuclear protein MDM1-like isoform X2 OS=Lingula unguis OX=7574 GN=LOC106151943 PE=4 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 3.598e-16 Identity = 69/227 (30.40%), Postives = 111/227 (48.90%), Query Frame = 1 Query: 631 TEYQTKYAWREPLAKQSQEHNKTSENQSKFDLKLKIYNNF--LSEYQQQFRPY-EFVNENRFKRMMTAHE---------KNPTETHLQIIPDNRDHGRRAITPPPRLHY----KDKLVASHETMNPQRLHLPHGKSKRFDTEYSANF---------DNKWKNLENELDKSREENEA-RQSNQQ-------SKWFKEILELRKKAQEYRQRTRGTHFSREHLGEIFTK 1212 +EYQ +++W++P+ + S DL +N +EY QF+P+ +F K+ E ++ +E L++ PD R PP +H DK + E++NPQR+ PHGK + + +EY +NF D W+ +ENE+ ++ QQ + WF E++ELRKKA+EYR+R +GTHFSREHL ++ + Sbjct: 248 SEYQKEFSWKKPVESVPLLQAEQVVYNSSMDLPPYKSDNIPRTTEYNNQFKPWTDFYKPVEPKKTENGPEGGRKKHKMKRSKSEAELRLSPDKR--------PPAGIHQVTSPDDKRLV-KESLNPQRIFFPHGKYRNYRSEYHSNFRPPWKYTYEDGAWRGANPPHIMPVKENESDPEAGQQPPPPSPGANWFAEVVELRKKAEEYRKRAQGTHFSREHLAQLLAQ 465
BLAST of nuclear protein MDM1-like isoform X1 vs. TrEMBL
Match: R7UH63 (Uncharacterized protein (Fragment) OS=Capitella teleta OX=283909 GN=CAPTEDRAFT_223023 PE=4 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.772e-13 Identity = 79/277 (28.52%), Postives = 120/277 (43.32%), Query Frame = 1 Query: 520 IPKDEGLIEKKPKKTDQISREMK-----------NKVSSPYSMPTPAQTEYQTKYAWRE-----PLAKQSQEHNKTSENQSKFDLKLKIYNNFLSEYQQQFRPYEFVNENRFKRMMTAHEKNPTETHLQIIPDNRDHGRRAITPPPRLH-----YKDKLVASHETMNPQRLHLPHGKSKRFDTEYSANF---------DNKWKNLENELDKSREENEARQSNQQSKWFKEILELRKKAQEYRQRTRGTHFSREHLGEIFTKFNKSSIDDYQDNDHLS 1260 + K+E LI ++ +K +I ++ K + V+ P S +EYQ ++ W + PL Q +K++ + + N SEY QF+ Y+ V R A K + PD+ PP L+ + +LV E++NP PHGK K ++EY NF D W + + E EA + + W+ E++ELRKKA EYR R RGTHFSR HL +++ + N D Y LS Sbjct: 347 LAKEEDLIRRQVEKEREIEQKKKALKGNYAMKYRSGVAPPRSRGPKRLSEYQLQFKWMKGVANSPLLAADQVVHKSNTQIGPYKTETA---NKKSEYATQFKQYQPVQSAEPARK-PAKVKRSRSLEAVVSPDH--------LPPAGLNRVTADFDPRLV--QESLNPNHFSFPHGKFKSSNSEYHRNFRPPKDYVYQDGAWGGVVPPRVEPVMEPEAEEGAPTNSWYSEVMELRKKAAEYRLRARGTHFSRSHLAQLYAQ-NAELWDSYSVVSALS 608
BLAST of nuclear protein MDM1-like isoform X1 vs. Ensembl Cavefish
Match: mdm1 (Mdm1 nuclear protein [Source:NCBI gene;Acc:557148]) HSP 1 Score: 51.9878 bits (123), Expect = 1.801e-6 Identity = 26/78 (33.33%), Postives = 47/78 (60.26%), Query Frame = 1 Query: 991 KRFDTEYSANFDN--KWKNLENELDKSREENEARQSNQQSKWFKEILELRKKAQEYRQRTRGTHFSREHLGEIFTKFN 1218 ++ TEY++NF + +++ + +SR E + +W+ E+ +LR KA YR+R GTHFSR+HL ++ ++ N Sbjct: 260 RKVKTEYTSNFRSPLQYRYKDGAWIRSRVSGE-----EGHEWYHEVQDLRAKADAYRKRAWGTHFSRQHLSQVISEQN 332
BLAST of nuclear protein MDM1-like isoform X1 vs. Planmine SMEST
Match: SMESG000058479.1 (SMESG000058479.1) HSP 1 Score: 1100.5 bits (2845), Expect = 0.000e+0 Identity = 599/603 (99.34%), Postives = 602/603 (99.83%), Query Frame = 1 Query: 46 MIKSEYERSYQWNPPGGEHYSKNLKNKNKFSEPIMTHKRRVKVTEDNVIIGEPLPTQNNEIIKEDPYFVLGDKTKKFHPSIPYRNMKALDKAKIENKHTNKTNYKIKKIPENPNFSKDDNRNEXXXXXXXXFISEAVQTENDEVEGQIKAKVDTSIQSIPKDEGLIEKKPKKTDQISREMKNKVSSPYSMPTPAQTEYQTKYAWREPLAKQSQEHNKTSENQSKFDLKLKIYNNFLSEYQQQFRPYEFVNENRFKRMMTAHEKNPTETHLQIIPDNRDHGRRAITPPPRLHYKDKLVASHETMNPQRLHLPHGKSKRFDTEYSANFDNKWKNLENELDKSREENEARQSNQQSKWFKEILELRKKAQEYRQRTRGTHFSREHLGEIFTKFNKSSIDDYQDNDHLSEQIDRRNNHRNQSPIVKRSKSFHHSRRIEPSQTIPNQYNRQKNSSSIEETILTPXXXXXXXXXTIVRKSSRSNSRSPEPKYLNWQQRSAGKPSFDNNLLLDEEASHDTEIKDDFKFNEPLRPSFSNAPEKEYTFQKYFNENPERSKNMRTIDYDXXXXXXXXXXXXXXXXXXXXXXXXXXXLALETLERAKRNRDEIF 1854 MIKSEYERSYQW PPGGEHYSKNLKNKNKFSEPIMTHKRRVKVTEDNVIIGEPLPTQNNEIIKEDPYFVLGDKTKKFHPSIPYRNMKALDKAKIENKHTNKTNYKIKKIPENPNFSKDDNR+EKKKPKKIKFISEAVQTENDEVEGQIKAKVDTSIQSIPKDEGLIEKKPKKTDQ+SREMKNKVSSPYSMPTPAQTEYQTKYAWREPLAKQSQEHNKTSENQSKFDLKLKIYNNFLSEYQQQFRPYEFVNENRFKRMMTAHEKNPTETHLQIIPDNRDHGRRAITPPPRLHYKDKLVASHETMNPQRLHLPHGKSKRFDTEYSANFDNKWKNLENELDKSREENEARQSNQQSKWFKEILELRKKAQEYRQRTRGTHFSREHLGEIFTKFNKSSIDDYQDNDHLSEQIDRRNNHRNQSPIVKRSKSFHHSRRIEPSQTIPNQYNRQKNSSSIEETILTPSSGRSSSGSTIVRKSSRSNSRSPEP+YLNWQQRSAGKPSFDNNLLLDEEASHDTEIKDDFKFNEPLRPSFSNAPEKEYTFQKYFNENPERSKNMRTIDYDTVIKSSSVSKMSSVRSVISTSSRSSRSLALETLERAKRNRDEIF Sbjct: 1 MIKSEYERSYQWTPPGGEHYSKNLKNKNKFSEPIMTHKRRVKVTEDNVIIGEPLPTQNNEIIKEDPYFVLGDKTKKFHPSIPYRNMKALDKAKIENKHTNKTNYKIKKIPENPNFSKDDNRDEKKKPKKIKFISEAVQTENDEVEGQIKAKVDTSIQSIPKDEGLIEKKPKKTDQMSREMKNKVSSPYSMPTPAQTEYQTKYAWREPLAKQSQEHNKTSENQSKFDLKLKIYNNFLSEYQQQFRPYEFVNENRFKRMMTAHEKNPTETHLQIIPDNRDHGRRAITPPPRLHYKDKLVASHETMNPQRLHLPHGKSKRFDTEYSANFDNKWKNLENELDKSREENEARQSNQQSKWFKEILELRKKAQEYRQRTRGTHFSREHLGEIFTKFNKSSIDDYQDNDHLSEQIDRRNNHRNQSPIVKRSKSFHHSRRIEPSQTIPNQYNRQKNSSSIEETILTPSSGRSSSGSTIVRKSSRSNSRSPEPRYLNWQQRSAGKPSFDNNLLLDEEASHDTEIKDDFKFNEPLRPSFSNAPEKEYTFQKYFNENPERSKNMRTIDYDTVIKSSSVSKMSSVRSVISTSSRSSRSLALETLERAKRNRDEIF 603 The following BLAST results are available for this feature:
BLAST of nuclear protein MDM1-like isoform X1 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 1
BLAST of nuclear protein MDM1-like isoform X1 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of nuclear protein MDM1-like isoform X1 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of nuclear protein MDM1-like isoform X1 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of nuclear protein MDM1-like isoform X1 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 1
BLAST of nuclear protein MDM1-like isoform X1 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 2
BLAST of nuclear protein MDM1-like isoform X1 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 3
BLAST of nuclear protein MDM1-like isoform X1 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of nuclear protein MDM1-like isoform X1 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 1
BLAST of nuclear protein MDM1-like isoform X1 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of nuclear protein MDM1-like isoform X1 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of nuclear protein MDM1-like isoform X1 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of nuclear protein MDM1-like isoform X1 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of nuclear protein MDM1-like isoform X1 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 1
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30031309 ID=SMED30031309|Name=nuclear protein MDM1-like isoform X1|organism=Schmidtea mediterranea sexual|type=transcript|length=2031bpback to top protein sequence of SMED30031309-orf-1 >SMED30031309-orf-1 ID=SMED30031309-orf-1|Name=SMED30031309-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=614bp MIKSEYERSYQWNPPGGEHYSKNLKNKNKFSEPIMTHKRRVKVTEDNVIIback to top Annotated Terms
The following terms have been associated with this transcript:
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