F-box domain-containing protein

Overview
NameF-box domain-containing protein
Smed IDSMED30031271
Length (bp)1132
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of F-box domain-containing protein (SMED30031271) t-SNE clustered cells

Violin plots show distribution of expression levels for F-box domain-containing protein (SMED30031271) in cells (dots) of each of the 12 neoblast clusters.

 

back to top

 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of F-box domain-containing protein (SMED30031271) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for F-box domain-containing protein (SMED30031271) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top

 

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020



SMED30031271

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 1

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30031271SMESG000009405.1 SmedASXL_008984SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of F-box domain-containing protein vs. TrEMBL
Match: A0A095AL26 (F-box domain-containing protein OS=Schistosoma haematobium OX=6185 GN=MS3_03007 PE=4 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.095e-17
Identity = 95/334 (28.44%), Postives = 150/334 (44.91%), Query Frame = 2 
Query:   26 KMKIRFKYQKKFLIFSMDEIDPTVKQIILGAADKFDLNANNVEISLNANDYYDSENYGSQRASELKIVNGDIIHVRLNGLYDDIKNIVKQEIAYKLEEVL--ECSNVTYKSPTLLKLLIPIHLFMSETGFSMRNDGRPFLQFVLDSFHSEASSDEIPKLMRLVY-FLFKDSFTVNLTIYYTEPHVCIYGS---YPESKSIYFYN---FKSKDFILQN---------QARNAF---------NKADFVYKNLLQFSNSFKNSIAVPLRIDICLSKFIPTHSFFQVLPYEIIHRILEYLDIKSILSVMSTCQRLNEAGRFCSTIWLRRLLKSTGKN 946
            KM++R K+  KF +F       T+ +I   A+  F L   NV+ISLNA DYY+  NY +Q  SEL IVNGDII++      DDIK  ++ E+A  + + +    SN  + + TLL + IP+++F  E G            + LD  H      E+  ++RL + +   DS  +  T++      CI  S    P  K +          +D I Q+            ++F         NK + +Y++L   S   K+ +  P+ + I     +        LP E+   IL YL + S+  +M   + L+   R C+T+W   L K   KN
Sbjct:   46 KMRLRLKFLNKFHVFETATASATLNEIFESASKIFSLKRENVQISLNAKDYYNI-NYSNQSLSELGIVNGDIIYINSLEKLDDIKQSLETELATPILKFINDNLSNDQHYTSTLL-MAIPLYIFAIEKGL-----------YTLD--HLSQYYQEMSSIIRLTFNYPQVDSIKLIFTLFQNGNMTCIAASVQDLPIRKQLILQTKLYLIKQDTIHQSCIFSNNLLFVCLSSFVCMLNLATTNKLNLLYRHLRLLSIRIKDELIEPILLAIHSEYNLSPRLHLCTLPSELFCEILCYLRLTSLGFLMLCNRELSYRIRNCNTVWRIHLAKLNAKN 364
[Close]
BLAST of F-box domain-containing protein vs. TrEMBL
Match: A0A4S2LHB0 (F-box domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_008897 PE=4 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.562e-15
Identity = 78/302 (25.83%), Postives = 141/302 (46.69%), Query Frame = 2 
Query:   29 MKIRFKYQKKFLIFSMDEIDPTVKQIILGAADKFDLNANNVEISLNANDYYDSENYGSQRASELKIVNGDIIHVRLNGLYDDIKNIVKQEIAYKLEEVLECSNVTYKSPTLLKLL-IPIHLFMSETGFSMRNDGRPFLQFVLDSFHSEASSDEIPKLMRLVYFLFKDSFTVNLTIYYTEPHVCIYGSYPESKSIYFYNFKSKDFILQNQ-ARNAFNKADFVYKNLLQFSNSFKNSIAVPLRIDICLSKFIPTHSFFQVLPYEIIHRILEYLDIKSILSVMSTCQRLNEAGRFCSTIWLRRLL 928
            MKIRFK++ KF +  +   D  V  ++   +D F +   NV+ISLNA D+           S + IVNGDI++V+   L DDI++ ++ E+   ++ +  C+ ++  +  +L L  +P++L  +E            LQ V D     AS       +R VY +      +  T+Y     +C+  S  E +         +D+++ +   +       F++KNL   SN  K+ +  P+ ++I     +P       LP+EI+ RI  Y+ + ++  +M     L +  + C+ +W R LL
Sbjct:    1 MKIRFKFRNKFHVHEISTKDAHVIDLLRVVSDLFKVALPNVQISLNAKDFMGLAE-SDVPISTVGIVNGDIVYVQSLELLDDIRHSMEHELFTSVDAL--CNQLSLANHNVLSLFALPVYLCANEKK----------LQCV-DELADVASLASTALRLRFVY-VSTPEIHITFTVYTIGNLICMAASCKELQLARQLILSLRDYLVVSALGQQVIPTPSFLFKNLQLLSNRIKDELIEPVLVNIHAELGMPERIMLTNLPFEILTRIFLYVPLLTLGKLMLCNSFLYQQIKSCAPVW-RALL 286
[Close]
BLAST of F-box domain-containing protein vs. TrEMBL
Match: A0A3Q0KLC2 (F-box domain-containing protein OS=Schistosoma mansoni OX=6183 PE=4 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.688e-15
Identity = 87/313 (27.80%), Postives = 154/313 (49.20%), Query Frame = 2 
Query:   29 MKIRFKYQKKFLIFSMDEIDPTVKQIILGAADKFDLNANNVEISLNANDYYDSENYGSQRASELKIVNGDIIHVRLNGLYDDIKNIVKQEIAYKLEEVLECSNVTYKSP--TLLKLLIPIHLFMSETGFSMRNDGRPFLQFVLDSFHSEASSDEIPKLMRLVY-FLFKDSFTVNLTIYYTEPHVCIYGS---YPESKSIYFYNFKSKDFILQNQA--RNAFNKADFVYKNLLQFSNSFKNSIAVPLRIDICLSKFIPTHSFFQVLPYEIIHRILEYLDIKSILSVMSTCQRLNEAGRFCSTIWLRRLLKSTGK 943
            MK+R K+  KF +F       T+ +I   A+  F L   NV+ISLNA DYY+  N+ +Q  S L IVNGDII++R     DDIK  ++ E+   +  ++  +++T   P  ++  + IP+++F ++ G    +D        ++ ++ + SS     ++RL + +    S  V  T++      CI  S   +P  K +     ++K ++++  A  ++  NK + +Y+NL   +   K+ +  P+ + I     +        LP E+   IL YL + S+ S+M   + L    R C+TIW  +L K   K
Sbjct:    1 MKLRLKFLNKFHVFETAAASDTLNEIFESASKIFGLKRENVQISLNAKDYYNI-NHSNQSISNLGIVNGDIIYIRSLEKLDDIKQSLEMELTTPIFRLI--NHITNFQPYSSIYLMAIPLYIFATDKGLYNLDD--------INQYYQQRSS-----IIRLTFNYPQVHSIKVIFTLFQNGNMTCIAASVEDHPIRKQLI---LQTKIYLIKQDAICQSTVNKLNLLYRNLRLLAIRIKDKLIEPILLAIHSEFNLSPRLHLCTLPRELFCEILCYLPLTSLGSLMFCNRELYCRIRNCNTIWRIQLAKLNAK 294
[Close]
BLAST of F-box domain-containing protein vs. TrEMBL
Match: A0A075AEK4 (F-box domain-containing protein OS=Opisthorchis viverrini OX=6198 GN=T265_13928 PE=4 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.103e-14
Identity = 77/320 (24.06%), Postives = 151/320 (47.19%), Query Frame = 2 
Query:   29 MKIRFKYQKKFLIFSMDEIDPTVKQII-------LGAADKFDL-NANNVEISLNANDYYDSENYGSQRASELKIVNGDIIHVRLNGLYDDIKNIVKQEIAYKLEEVLECSNVTYKSPTLLKL-LIPIHLFMSETGFSMRNDGRPFLQFVLDSFHSEASSDEIPKLMRLVYFLFKDSFT--------VNLTIYYTEPHVCIYGSYPESKSIYFYNFKSKDFILQNQ-ARNAFNKADFVYKNLLQFSNSFKNSIAVPLRIDICLSKFIPTHSFFQVLPYEIIHRILEYLDIKSILSVMSTCQRLNEAGRFCSTIWLRRLLKS 934
            MKIRFK++ +F +  +   D  V  ++          + + +L ++ NV+ISLNA D+           S + IVNGDI++V+   L DDI++ ++ E+   ++ +  C+ V+  +  +L L ++P++L  +E    +         +VL     + SS+E+  ++ L     +  F         +  T+Y     +C+  S  E++         +D+++ +   +       F++KNL   SN  K+ +  P+ ++I     +P       LP+EI+ RIL YL + ++  +M     L +  + C+ +W R LL +
Sbjct:    1 MKIRFKFRNRFHVHEISAEDAHVIDLLRLLCKCFFSPSGRTNLYHSPNVQISLNAKDFIGLAE-SDVPISTVGIVNGDIVYVQSLELLDDIRHSMEHELFTSVDAL--CNRVSLANHNVLSLFVLPVYLCANEKKLQVL--------YVLCDHRVDQSSNELVDVVNLASTALRLRFVYASTPEIHITFTVYTVGNLICMAASCKEAQLARQLILSLRDYLVVSALGQQVIPTPSFLFKNLQLLSNRIKDELIEPMLVNIHAELGMPERIMLTNLPFEILTRILLYLPLSTLGKLMLCNSFLYQQIKSCAPVW-RALLAT 308
[Close]
BLAST of F-box domain-containing protein vs. TrEMBL
Match: A0A183QCL5 (Uncharacterized protein OS=Schistosoma rodhaini OX=6188 PE=4 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.252e-13
Identity = 87/313 (27.80%), Postives = 151/313 (48.24%), Query Frame = 2 
Query:   29 MKIRFKYQKKFLIFSMDEIDPTVKQIILGAADKFDLNANNVEISLNANDYYDSENYGSQRASELKIVNGDIIHVRLNGLYDDIKNIVKQEIAYKLEEVLECSNVTYKSP--TLLKLLIPIHLFMSETGFSMRNDGRPFLQFVLDSFHSEASSDEIPKLMRLVY-FLFKDSFTVNLTIYYTEPHVCIYGS---YPESKSIYFYNFKSKDFILQNQA--RNAFNKADFVYKNLLQFSNSFKNSIAVPLRIDICLSKFIPTHSFFQVLPYEIIHRILEYLDIKSILSVMSTCQRLNEAGRFCSTIWLRRLLKSTGK 943
            MK+R K+  KF +F       T+ +I   A   F L   NV+ISLNA DYY+  N+ +Q  S L IVNGDII++R     DDIK  ++ E+   +  ++  +++T   P  ++  + IP+++F ++ G    +D        L+ ++ + SS     ++RL + +    S  V  T++     +CI  S   +P  K +     ++K ++++  A  ++  NK + +Y+NL   +   K+ +  P+ + I        HS            IL YL + S+ S+M   + L    R C+TIW  +L K   K
Sbjct:    1 MKLRLKFLNKFHVFETATASATLNEIFESATKIFGLKRENVQISLNAKDYYNI-NHSNQSISNLGIVNGDIIYIRSLEKLDDIKQSLEIELTTPIFRLI--NHITNFQPYSSIYLMAIPLYIFATDKGLHNLDD--------LNQYYQQRSS-----IIRLTFNYPQVHSIKVIFTLFQNGNMICIAASVQDHPIRKQLI---LQTKIYLIKQDAICQSTVNKLNLLYRNLRLLAIRIKDELIEPILLAI--------HS----------GEILCYLPLTSLGSLMFCNRELYYRIRNCNTIWRIQLAKLNAK 276
[Close]
BLAST of F-box domain-containing protein vs. Planmine SMEST
Match: SMESG000009405.1 (SMESG000009405.1)

HSP 1 Score: 725.702 bits (1872), Expect = 0.000e+0
Identity = 354/355 (99.72%), Postives = 355/355 (100.00%), Query Frame = 2 
Query:   29 MKIRFKYQKKFLIFSMDEIDPTVKQIILGAADKFDLNANNVEISLNANDYYDSENYGSQRASELKIVNGDIIHVRLNGLYDDIKNIVKQEIAYKLEEVLECSNVTYKSPTLLKLLIPIHLFMSETGFSMRNDGRPFLQFVLDSFHSEASSDEIPKLMRLVYFLFKDSFTVNLTIYYTEPHVCIYGSYPESKSIYFYNFKSKDFILQNQARNAFNKADFVYKNLLQFSNSFKNSIAVPLRIDICLSKFIPTHSFFQVLPYEIIHRILEYLDIKSILSVMSTCQRLNEAGRFCSTIWLRRLLKSTGKNITEFDSDDITEEREPDNFYKKYLLYQKERKLKRKAANAVSREFDELYYL 1093
            MKIRFKYQKKFLIFSMDEIDPTVKQIILGAADKFDLNANNVEISLNANDYYDSENYGSQRASELKIVNGDIIHVRLNGLYDDIKNIVKQEIAYKLEEVLECSNVTYKSPTLLKLLIPIHLFMSETGFSMRNDGRPFLQFVLDSFHSEASSDEIPKLMRL+YFLFKDSFTVNLTIYYTEPHVCIYGSYPESKSIYFYNFKSKDFILQNQARNAFNKADFVYKNLLQFSNSFKNSIAVPLRIDICLSKFIPTHSFFQVLPYEIIHRILEYLDIKSILSVMSTCQRLNEAGRFCSTIWLRRLLKSTGKNITEFDSDDITEEREPDNFYKKYLLYQKERKLKRKAANAVSREFDELYYL
Sbjct:    1 MKIRFKYQKKFLIFSMDEIDPTVKQIILGAADKFDLNANNVEISLNANDYYDSENYGSQRASELKIVNGDIIHVRLNGLYDDIKNIVKQEIAYKLEEVLECSNVTYKSPTLLKLLIPIHLFMSETGFSMRNDGRPFLQFVLDSFHSEASSDEIPKLMRLIYFLFKDSFTVNLTIYYTEPHVCIYGSYPESKSIYFYNFKSKDFILQNQARNAFNKADFVYKNLLQFSNSFKNSIAVPLRIDICLSKFIPTHSFFQVLPYEIIHRILEYLDIKSILSVMSTCQRLNEAGRFCSTIWLRRLLKSTGKNITEFDSDDITEEREPDNFYKKYLLYQKERKLKRKAANAVSREFDELYYL 355
[Close]
BLAST of F-box domain-containing protein vs. Planmine SMEST
Match: SMESG000009405.1 (SMESG000009405.1)

HSP 1 Score: 696.041 bits (1795), Expect = 0.000e+0
Identity = 339/340 (99.71%), Postives = 340/340 (100.00%), Query Frame = 2 
Query:   74 MDEIDPTVKQIILGAADKFDLNANNVEISLNANDYYDSENYGSQRASELKIVNGDIIHVRLNGLYDDIKNIVKQEIAYKLEEVLECSNVTYKSPTLLKLLIPIHLFMSETGFSMRNDGRPFLQFVLDSFHSEASSDEIPKLMRLVYFLFKDSFTVNLTIYYTEPHVCIYGSYPESKSIYFYNFKSKDFILQNQARNAFNKADFVYKNLLQFSNSFKNSIAVPLRIDICLSKFIPTHSFFQVLPYEIIHRILEYLDIKSILSVMSTCQRLNEAGRFCSTIWLRRLLKSTGKNITEFDSDDITEEREPDNFYKKYLLYQKERKLKRKAANAVSREFDELYYL 1093
            MDEIDPTVKQIILGAADKFDLNANNVEISLNANDYYDSENYGSQRASELKIVNGDIIHVRLNGLYDDIKNIVKQEIAYKLEEVLECSNVTYKSPTLLKLLIPIHLFMSETGFSMRNDGRPFLQFVLDSFHSEASSDEIPKLMRL+YFLFKDSFTVNLTIYYTEPHVCIYGSYPESKSIYFYNFKSKDFILQNQARNAFNKADFVYKNLLQFSNSFKNSIAVPLRIDICLSKFIPTHSFFQVLPYEIIHRILEYLDIKSILSVMSTCQRLNEAGRFCSTIWLRRLLKSTGKNITEFDSDDITEEREPDNFYKKYLLYQKERKLKRKAANAVSREFDELYYL
Sbjct:    1 MDEIDPTVKQIILGAADKFDLNANNVEISLNANDYYDSENYGSQRASELKIVNGDIIHVRLNGLYDDIKNIVKQEIAYKLEEVLECSNVTYKSPTLLKLLIPIHLFMSETGFSMRNDGRPFLQFVLDSFHSEASSDEIPKLMRLIYFLFKDSFTVNLTIYYTEPHVCIYGSYPESKSIYFYNFKSKDFILQNQARNAFNKADFVYKNLLQFSNSFKNSIAVPLRIDICLSKFIPTHSFFQVLPYEIIHRILEYLDIKSILSVMSTCQRLNEAGRFCSTIWLRRLLKSTGKNITEFDSDDITEEREPDNFYKKYLLYQKERKLKRKAANAVSREFDELYYL 340
The following BLAST results are available for this feature:
BLAST of F-box domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of F-box domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of F-box domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of F-box domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of F-box domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of F-box domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of F-box domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of F-box domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A095AL262.095e-1728.44F-box domain-containing protein OS=Schistosoma hae... [more]
A0A4S2LHB01.562e-1525.83F-box domain-containing protein OS=Opisthorchis fe... [more]
A0A3Q0KLC21.688e-1527.80F-box domain-containing protein OS=Schistosoma man... [more]
A0A075AEK41.103e-1424.06F-box domain-containing protein OS=Opisthorchis vi... [more]
A0A183QCL54.252e-1327.80Uncharacterized protein OS=Schistosoma rodhaini OX... [more]
back to top
BLAST of F-box domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of F-box domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of F-box domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of F-box domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of F-box domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of F-box domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000009405.10.000e+099.72SMESG000009405.1[more]
SMESG000009405.10.000e+099.71SMESG000009405.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30031271 ID=SMED30031271|Name=F-box domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1132bp
CTTGATGTGAAATTTCAGTTTGGTAAAAATGAAAATACGATTTAAATATC
AAAAAAAATTTCTTATTTTTTCGATGGATGAAATTGATCCGACTGTAAAA
CAAATCATTCTAGGAGCTGCTGATAAATTTGATTTAAATGCAAATAATGT
AGAAATAAGCTTAAACGCCAATGACTATTATGATTCTGAAAATTATGGAA
GTCAACGAGCATCTGAATTAAAAATTGTTAATGGTGATATTATTCATGTT
AGGCTTAATGGATTATATGACGACATTAAAAATATTGTGAAACAAGAAAT
TGCTTATAAACTCGAAGAAGTTTTAGAGTGCTCAAATGTAACTTATAAAT
CTCCAACATTATTGAAGTTATTAATACCAATTCATTTATTTATGTCCGAA
ACTGGATTTTCTATGCGCAATGATGGTCGGCCGTTTCTTCAATTTGTATT
AGACTCATTTCACAGTGAAGCTTCATCCGATGAAATACCTAAACTAATGA
GACTGGTTTATTTTTTATTCAAGGATTCTTTTACTGTCAACCTAACAATT
TATTACACGGAACCTCATGTTTGCATCTATGGATCTTATCCGGAATCAAA
AAGTATTTATTTTTATAATTTCAAATCAAAAGATTTTATTTTGCAAAATC
AAGCCAGAAACGCTTTTAACAAAGCAGATTTTGTGTATAAAAATTTATTA
CAATTTTCAAATTCATTCAAAAATTCAATCGCAGTTCCTCTTCGAATAGA
TATTTGTTTAAGCAAATTCATTCCAACACATAGTTTTTTCCAAGTTCTTC
CCTATGAAATTATTCATAGAATTCTTGAATATCTTGACATTAAATCAATT
TTGTCAGTTATGTCCACTTGCCAGCGGCTTAATGAAGCTGGTAGGTTTTG
TAGTACAATTTGGTTGAGACGATTGTTGAAATCAACAGGAAAAAATATCA
CTGAATTCGATTCTGATGACATTACAGAAGAAAGAGAACCAGATAATTTT
TATAAAAAGTATTTATTATATCAGAAAGAAAGGAAATTAAAACGCAAAGC
TGCAAATGCTGTCTCAAGAGAATTTGATGAATTATATTACTTATGATAAA
TTCATTTTTAAAAAAATAAAATTCTTTAGATC
back to top

protein sequence of SMED30031271-orf-1

>SMED30031271-orf-1 ID=SMED30031271-orf-1|Name=SMED30031271-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=356bp
MKIRFKYQKKFLIFSMDEIDPTVKQIILGAADKFDLNANNVEISLNANDY
YDSENYGSQRASELKIVNGDIIHVRLNGLYDDIKNIVKQEIAYKLEEVLE
CSNVTYKSPTLLKLLIPIHLFMSETGFSMRNDGRPFLQFVLDSFHSEASS
DEIPKLMRLVYFLFKDSFTVNLTIYYTEPHVCIYGSYPESKSIYFYNFKS
KDFILQNQARNAFNKADFVYKNLLQFSNSFKNSIAVPLRIDICLSKFIPT
HSFFQVLPYEIIHRILEYLDIKSILSVMSTCQRLNEAGRFCSTIWLRRLL
KSTGKNITEFDSDDITEEREPDNFYKKYLLYQKERKLKRKAANAVSREFD
ELYYL*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR036047F-box-like_dom_sf
IPR001810F-box_dom
Vocabulary: molecular function
TermDefinition
GO:0005515protein binding
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainSMARTSM00256fbox_2coord: 257..298
e-value: 1.3E-7
score: 41.3
IPR001810F-box domainPFAMPF00646F-boxcoord: 254..286
e-value: 8.5E-6
score: 25.5
IPR001810F-box domainPROSITEPS50181FBOXcoord: 251..298
score: 11.193
NoneNo IPR availableGENE3DG3DSA:1.20.1280.50coord: 251..347
e-value: 1.6E-7
score: 33.2
NoneNo IPR availableGENE3DG3DSA:3.40.1000.30coord: 93..250
e-value: 1.9E-13
score: 52.2
NoneNo IPR availablePANTHERPTHR15537FAMILY NOT NAMEDcoord: 87..312
IPR036047F-box-like domain superfamilySUPERFAMILYSSF81383F-box domaincoord: 251..301