SMED30031220

Overview
NameSMED30031220
Smed IDSMED30031220
Length (bp)2814
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30031220 (SMED30031220) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30031220 (SMED30031220) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30031220 (SMED30031220) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30031220 (SMED30031220) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30031220

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 1

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
head regionSMED30031220SMESG000059987.1 SMESG000058130.1 SmedASXL_004862SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016
whole organism asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30031220 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.004668:15680..18841 +11613
Homology
BLAST of SMED30031220 vs. Planmine SMEST
Match: SMESG000058130.1 (SMESG000058130.1)

HSP 1 Score: 732.25 bits (1889), Expect = 0.000e+0
Identity = 404/408 (99.02%), Postives = 406/408 (99.51%), Query Frame = 1
Query: 1429 ENTNVEERNWEIKQLEISNAKLLEDIEKLEQENNSKICLFNKDQIMNESFFMEQLQILKAENKNLKNLIQEQNFLKATNWVENKDSEAEGSDNXXXXXXXXXXXXLDIFYXXXXXXXXXXXXXXXXXXXXXXGILNINLCHEKSTVQSLQNQFDDLSNGNIKMTKEMEKISRELEDFKILYQSVIEELRELKQRFDEKSIYYRNSIRSLSKKYLNLKRHYKQERHELIKREISDQTEINRLKVYCNQIKTDLKSRIELLEIQKKNLNERISKSHRQLNENIEESNGILKLTIKRHGWRKEHAVELLYTVNQLKDKCNEILNSNLIKPNPTNRYRYSSDSSERHSTNSPGSNIKISLRNSHIIGERNITNSLVTAQRKKYNESIATQDQEAITRVHQADNLLPHKHSDR 2652
            +NTNVEERNWEIKQLEISNAKLLEDIEKLEQENNSKICLFNKDQIMNESFFMEQLQILKAENKNLKNLIQEQNFLKATNWVENKDSEAEGSDNGVIEVESEVGESLDIFYQKEIIQIKEEFEKKKNEFEKEKGILNINLCHEKSTVQSLQNQFDDLSNGNIKMTKEMEKISR+LEDFKILYQSV EELRELKQRFDEKSIYYRNSIRSLSKKYLNLKRHYKQERHELIKREISDQTEINRLKVYCNQIKTDLKSRIELLEIQKKNLNERISKSHRQLNENIEESNGILKLTIKRHGWRKEHAVELLYTVNQLKDKCNEILNSNLIKPNPTNRYRYSSDSSERHSTNSPGSNIKISLRNSHIIGERNITNSLVTAQ KKYNESIATQDQEAITRVHQADNLLPHKHSDR
Sbjct:  171 QNTNVEERNWEIKQLEISNAKLLEDIEKLEQENNSKICLFNKDQIMNESFFMEQLQILKAENKNLKNLIQEQNFLKATNWVENKDSEAEGSDNGVIEVESEVGESLDIFYQKEIIQIKEEFEKKKNEFEKEKGILNINLCHEKSTVQSLQNQFDDLSNGNIKMTKEMEKISRDLEDFKILYQSVNEELRELKQRFDEKSIYYRNSIRSLSKKYLNLKRHYKQERHELIKREISDQTEINRLKVYCNQIKTDLKSRIELLEIQKKNLNERISKSHRQLNENIEESNGILKLTIKRHGWRKEHAVELLYTVNQLKDKCNEILNSNLIKPNPTNRYRYSSDSSERHSTNSPGSNIKISLRNSHIIGERNITNSLVTAQSKKYNESIATQDQEAITRVHQADNLLPHKHSDR 578          

HSP 2 Score: 200.675 bits (509), Expect = 0.000e+0
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 2
Query:  929 YKSKFGLPEFLSQEEKRILCTLTSPLIGTTNFNLPPSFEAFEKAISVVXXXXXXXXXXXXXXXQLTSLNSPRKYRRLEDDLKFLQNEFDIIQEEYYQIKSTSSKTVKKLESXXXXXXXXXXXXXXXXXXYSLTNSNLQ 1342
            YKSKFGLPEFLSQEEKRILCTLTSPLIGTTNFNLPPSFEAFEKAISVVSNLDISPNISISSDDQLTSLNSPRKYRRLEDDLKFLQNEFDIIQEEYYQIKSTSSKTVKKLESEKRELILKNKELIEKNEEYSLTNSNLQ
Sbjct:   21 YKSKFGLPEFLSQEEKRILCTLTSPLIGTTNFNLPPSFEAFEKAISVVSNLDISPNISISSDDQLTSLNSPRKYRRLEDDLKFLQNEFDIIQEEYYQIKSTSSKTVKKLESEKRELILKNKELIEKNEEYSLTNSNLQ 158          
BLAST of SMED30031220 vs. Planmine SMEST
Match: SMESG000058130.1 (SMESG000058130.1)

HSP 1 Score: 640.958 bits (1652), Expect = 0.000e+0
Identity = 361/364 (99.18%), Postives = 363/364 (99.73%), Query Frame = 1
Query: 1429 ENTNVEERNWEIKQLEISNAKLLEDIEKLEQENNSKICLFNKDQIMNESFFMEQLQILKAENKNLKNLIQEQNFLKATNWVENKDSEAEGSDNXXXXXXXXXXXXLDIFYXXXXXXXXXXXXXXXXXXXXXXGILNINLCHEKSTVQSLQNQFDDLSNGNIKMTKEMEKISRELEDFKILYQSVIEELRELKQRFDEKSIYYRNSIRSLSKKYLNLKRHYKQERHELIKREISDQTEINRLKVYCNQIKTDLKSRIELLEIQKKNLNERISKSHRQLNENIEESNGILKLTIKRHGWRKEHAVELLYTVNQLKDKCNEILNSNLIKPNPTNRYRYSSDSSERHSTNSPGSNIKISLRNSHIIGE 2520
            +NTNVEERNWEIKQLEISNAKLLEDIEKLEQENNSKICLFNKDQIMNESFFMEQLQILKAENKNLKNLIQEQNFLKATNWVENKDSEAEGSDNGVIEVESEVGESLDIFYQKEIIQIKEEFEKKKNEFEKEKGILNINLCHEKSTVQSLQNQFDDLSNGNIKMTKEMEKISR+LEDFKILYQSV EELRELKQRFDEKSIYYRNSIRSLSKKYLNLKRHYKQERHELIKREISDQTEINRLKVYCNQIKTDLKSRIELLEIQKKNLNERISKSHRQLNENIEESNGILKLTIKRHGWRKEHAVELLYTVNQLKDKCNEILNSNLIKPNPTNRYRYSSDSSERHSTNSPGSNIKISLRNSHIIGE
Sbjct:  171 QNTNVEERNWEIKQLEISNAKLLEDIEKLEQENNSKICLFNKDQIMNESFFMEQLQILKAENKNLKNLIQEQNFLKATNWVENKDSEAEGSDNGVIEVESEVGESLDIFYQKEIIQIKEEFEKKKNEFEKEKGILNINLCHEKSTVQSLQNQFDDLSNGNIKMTKEMEKISRDLEDFKILYQSVNEELRELKQRFDEKSIYYRNSIRSLSKKYLNLKRHYKQERHELIKREISDQTEINRLKVYCNQIKTDLKSRIELLEIQKKNLNERISKSHRQLNENIEESNGILKLTIKRHGWRKEHAVELLYTVNQLKDKCNEILNSNLIKPNPTNRYRYSSDSSERHSTNSPGSNIKISLRNSHIIGE 534          

HSP 2 Score: 199.519 bits (506), Expect = 0.000e+0
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 2
Query:  929 YKSKFGLPEFLSQEEKRILCTLTSPLIGTTNFNLPPSFEAFEKAISVVXXXXXXXXXXXXXXXQLTSLNSPRKYRRLEDDLKFLQNEFDIIQEEYYQIKSTSSKTVKKLESXXXXXXXXXXXXXXXXXXYSLTNSNLQ 1342
            YKSKFGLPEFLSQEEKRILCTLTSPLIGTTNFNLPPSFEAFEKAISVVSNLDISPNISISSDDQLTSLNSPRKYRRLEDDLKFLQNEFDIIQEEYYQIKSTSSKTVKKLESEKRELILKNKELIEKNEEYSLTNSNLQ
Sbjct:   21 YKSKFGLPEFLSQEEKRILCTLTSPLIGTTNFNLPPSFEAFEKAISVVSNLDISPNISISSDDQLTSLNSPRKYRRLEDDLKFLQNEFDIIQEEYYQIKSTSSKTVKKLESEKRELILKNKELIEKNEEYSLTNSNLQ 158          
BLAST of SMED30031220 vs. Planmine SMEST
Match: SMESG000058130.1 (SMESG000058130.1)

HSP 1 Score: 639.802 bits (1649), Expect = 0.000e+0
Identity = 361/364 (99.18%), Postives = 363/364 (99.73%), Query Frame = 1
Query: 1429 ENTNVEERNWEIKQLEISNAKLLEDIEKLEQENNSKICLFNKDQIMNESFFMEQLQILKAENKNLKNLIQEQNFLKATNWVENKDSEAEGSDNXXXXXXXXXXXXLDIFYXXXXXXXXXXXXXXXXXXXXXXGILNINLCHEKSTVQSLQNQFDDLSNGNIKMTKEMEKISRELEDFKILYQSVIEELRELKQRFDEKSIYYRNSIRSLSKKYLNLKRHYKQERHELIKREISDQTEINRLKVYCNQIKTDLKSRIELLEIQKKNLNERISKSHRQLNENIEESNGILKLTIKRHGWRKEHAVELLYTVNQLKDKCNEILNSNLIKPNPTNRYRYSSDSSERHSTNSPGSNIKISLRNSHIIGE 2520
            +NTNVEERNWEIKQLEISNAKLLEDIEKLEQENNSKICLFNKDQIMNESFFMEQLQILKAENKNLKNLIQEQNFLKATNWVENKDSEAEGSDNGVIEVESEVGESLDIFYQKEIIQIKEEFEKKKNEFEKEKGILNINLCHEKSTVQSLQNQFDDLSNGNIKMTKEMEKISR+LEDFKILYQSV EELRELKQRFDEKSIYYRNSIRSLSKKYLNLKRHYKQERHELIKREISDQTEINRLKVYCNQIKTDLKSRIELLEIQKKNLNERISKSHRQLNENIEESNGILKLTIKRHGWRKEHAVELLYTVNQLKDKCNEILNSNLIKPNPTNRYRYSSDSSERHSTNSPGSNIKISLRNSHIIGE
Sbjct:  233 QNTNVEERNWEIKQLEISNAKLLEDIEKLEQENNSKICLFNKDQIMNESFFMEQLQILKAENKNLKNLIQEQNFLKATNWVENKDSEAEGSDNGVIEVESEVGESLDIFYQKEIIQIKEEFEKKKNEFEKEKGILNINLCHEKSTVQSLQNQFDDLSNGNIKMTKEMEKISRDLEDFKILYQSVNEELRELKQRFDEKSIYYRNSIRSLSKKYLNLKRHYKQERHELIKREISDQTEINRLKVYCNQIKTDLKSRIELLEIQKKNLNERISKSHRQLNENIEESNGILKLTIKRHGWRKEHAVELLYTVNQLKDKCNEILNSNLIKPNPTNRYRYSSDSSERHSTNSPGSNIKISLRNSHIIGE 596          

HSP 2 Score: 199.134 bits (505), Expect = 0.000e+0
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 2
Query:  929 YKSKFGLPEFLSQEEKRILCTLTSPLIGTTNFNLPPSFEAFEKAISVVXXXXXXXXXXXXXXXQLTSLNSPRKYRRLEDDLKFLQNEFDIIQEEYYQIKSTSSKTVKKLESXXXXXXXXXXXXXXXXXXYSLTNSNLQ 1342
            YKSKFGLPEFLSQEEKRILCTLTSPLIGTTNFNLPPSFEAFEKAISVVSNLDISPNISISSDDQLTSLNSPRKYRRLEDDLKFLQNEFDIIQEEYYQIKSTSSKTVKKLESEKRELILKNKELIEKNEEYSLTNSNLQ
Sbjct:   83 YKSKFGLPEFLSQEEKRILCTLTSPLIGTTNFNLPPSFEAFEKAISVVSNLDISPNISISSDDQLTSLNSPRKYRRLEDDLKFLQNEFDIIQEEYYQIKSTSSKTVKKLESEKRELILKNKELIEKNEEYSLTNSNLQ 220          
BLAST of SMED30031220 vs. Planmine SMEST
Match: SMESG000059987.1 (SMESG000059987.1)

HSP 1 Score: 500.745 bits (1288), Expect = 7.564e-172
Identity = 250/257 (97.28%), Postives = 252/257 (98.05%), Query Frame = 1
Query: 1915 MTKEMEKISRELEDFKILYQSVIEELRELKQRFDEKSIYYRNSIRSLSKKYLNLKRHYKQERHELIKREISDQTEINRLKVYCNQIKTDLKSRIELLEIQKKNLNERISKSHRQLNENIEESNGILKLTIKRHGWRKEHAVELLYTVNQLKDKCNEILNSNLIKPNPTNRYRYSSDSSERHSTNSPGSNIKISLRNSHIIGERNITNSLVTAQRKKYNESIATQDQEAITRVHQADNLLPHKHSDRYRRTSTSTNTF 2685
            MTKE+EKISRELEDFKILYQSV EELRELKQRFDEKSIYYRNSIRSLSKKYLNLKRHYKQERHELIKREISDQTEINRLKVYCNQIKTDLKSRIELLEIQKKNLNERISKSHRQLNENIEESNGILKLTIKRHGWRKEHAVELLYTVNQLKDKCNEILNSNLIKPNPTNRYRYSSDSSERHSTNSPGSN+KISLRNSHIIGERNITNSLVT Q KKYNESIATQDQEAITRVHQADNLLPHKHSDRYRRTSTSTN  
Sbjct:    1 MTKEIEKISRELEDFKILYQSVNEELRELKQRFDEKSIYYRNSIRSLSKKYLNLKRHYKQERHELIKREISDQTEINRLKVYCNQIKTDLKSRIELLEIQKKNLNERISKSHRQLNENIEESNGILKLTIKRHGWRKEHAVELLYTVNQLKDKCNEILNSNLIKPNPTNRYRYSSDSSERHSTNSPGSNLKISLRNSHIIGERNITNSLVTTQSKKYNESIATQDQEAITRVHQADNLLPHKHSDRYRRTSTSTNVI 257          
The following BLAST results are available for this feature:
BLAST of SMED30031220 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031220 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031220 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031220 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031220 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031220 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031220 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031220 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031220 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031220 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031220 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031220 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031220 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031220 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 4
Match NameE-valueIdentityDescription
SMESG000058130.10.000e+099.02SMESG000058130.1[more]
SMESG000058130.10.000e+099.18SMESG000058130.1[more]
SMESG000058130.10.000e+099.18SMESG000058130.1[more]
SMESG000059987.17.564e-17297.28SMESG000059987.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30031220 ID=SMED30031220|Name=SMED30031220|organism=Schmidtea mediterranea sexual|type=transcript|length=2814bp
GTCCTTTAGGATGAATCAACCTGAAATTAGAAATACGATAGTTTCTAATT
GATAGTTTCTAAGTTATAGTTTTATTTGAAAATATTGACTTAAACAATAA
AGAATCTGTAATTTATCCGGGTTATGAAACATTGCAACTAGAACATATCG
TAAATAATGAAAATTTCAATATTAATTTTGAAGGAAGTGAAACCTAAGAA
AATAACAATAATTGTATTTTGCGAACATTAGATTCGAATGACCTAATCGG
ATTCAAAAAACTAATTGTGCTTATTTATTATTTTAAACGTTTTTTGTTGA
TAGAAATTTTCAGCCATATTTTTTGACGCATACAATCAGAAATAGGGAAT
CAAACAAATCAAAAGGACAGAATTACGGGACAGTAACGTGCATAATTTTT
ATTAATTTTGTTACTATGATTTAAAATATGATTTTAAAATAATTATAGAA
ATAGAAAAAATTATTTTTAATTTTTGAATTATTTAATAATTTCCTTAAAA
TTCAAAAACATGTTTTCCATCGATTTAGCAATGTATTTATTTGCTTAAAA
TTTGTTTGAAAATAATTCATTTGATTAATTATTTATAAAAAATGGACGCT
TACTTAGATGTATTTACAATTATACGGAAGTGGTATAATAAATTATTAAA
ATTTGAAATTGAAATTCCCGAAGATTTTGATAATGGAAAAAAATACTTAG
AATTCCTTGGATTATGGTAAAATATTTAAAATGAATTTTTTGTTTTACTT
AATGCATAGTATGGAAATGAATGTTTTTGAAGATAAGAGAAAAAACTTCG
AAGAACTCAATAACATATTAGACAATTTTTTCCAATTTCAAACAAACAAC
ATATTAGACTATGAAAGTATAGTATATTCTCAATCCTTCGAAGATATAAT
TATTATATGTATTCTTATTTTCTACATTTATAAATCCAAATTTGGACTTC
CTGAATTTTTGAGTCAAGAAGAAAAGAGAATTTTATGCACATTAACGTCT
CCATTGATTGGGACTACTAATTTCAACCTCCCACCTTCGTTTGAGGCATT
TGAGAAGGCAATAAGCGTGGTTTCAAATTTAGATATTTCACCCAATATTT
CAATATCCAGCGATGACCAACTTACTTCCTTGAATTCCCCAAGAAAATAT
CGGAGGCTTGAAGATGATTTGAAATTTTTGCAAAATGAATTTGATATTAT
TCAAGAAGAATACTACCAAATAAAGTCAACGAGTTCTAAAACTGTGAAAA
AGCTGGAAAGCGAGAAAAGAGAGTTAATCTTAAAAAACAAAGAATTAATT
GAAAAAAATGAAGAATATTCTTTAACAAACTCAAATCTTCAAAAGTCAAT
AAAGAAATTAGAGAAAGAGTAACATGAGTAAATTGAAAAAAAAATTTATT
TATAATTTGTTAAAAAAGGAAGGAGAAGGAAAACACAAATGTAGAGGAAA
GAAATTGGGAAATTAAACAGCTAGAAATATCGAATGCAAAATTATTAGAA
GACATTGAAAAGCTAGAACAAGAAAATAATTCTAAAATATGTCTTTTCAA
CAAAGATCAAATCATGAACGAATCGTTTTTCATGGAACAGCTACAAATCT
TAAAAGCGGAAAATAAAAATCTTAAAAATCTTATTCAAGAACAAAATTTT
CTTAAAGCTACAAATTGGGTTGAGAATAAAGATTCTGAAGCTGAAGGGTC
TGACAATGGGGTAATAGAAGTTGAGTCTGAAGTTGGAGAATCATTAGATA
TATTTTATCAAAAAGAAATTATTCAAATAAAGGAAGAATTTGAAAAGAAA
AAAAATGAGTTTGAAAAAGAAAAAGGAATTCTAAATATTAATCTTTGTCA
CGAAAAATCGACAGTTCAAAGCTTACAAAATCAATTTGATGATTTATCTA
ACGGAAATATAAAAATGACCAAAGAAATGGAGAAAATATCACGAGAATTA
GAAGACTTCAAAATTCTATACCAATCAGTGATTGAAGAACTGAGAGAATT
AAAACAAAGATTTGATGAAAAAAGTATTTATTACAGAAATTCAATCCGAT
CCTTGAGCAAGAAATATTTAAATCTCAAGCGTCATTACAAACAGGAAAGG
CATGAATTAATTAAAAGAGAAATCAGTGACCAAACCGAAATAAACCGACT
AAAAGTCTACTGTAATCAAATAAAAACCGATTTGAAAAGTCGAATAGAAT
TATTGGAAATTCAAAAGAAAAATCTCAACGAAAGAATTTCCAAATCTCAT
CGACAGTTGAACGAGAATATTGAAGAGTCAAATGGCATATTGAAATTAAC
AATCAAAAGACATGGCTGGCGCAAAGAACACGCCGTAGAATTGTTGTATA
CGGTTAATCAGCTGAAAGACAAATGCAATGAGATTTTGAACAGTAATCTC
ATAAAACCAAATCCTACAAATAGATATCGTTACTCATCAGACTCTTCAGA
AAGGCATTCCACAAATAGCCCAGGATCGAATATAAAGATTTCATTGAGAA
ATAGTCATATCATCGGAGAAAGAAATATTACAAATTCATTAGTAACGGCA
CAAAGAAAAAAGTATAATGAATCCATTGCAACGCAAGACCAGGAAGCCAT
AACTAGGGTGCACCAGGCCGACAACCTCCTACCTCATAAGCATAGTGATA
GGTACAGAAGGACATCAACCAGCACAAATACATTTAGTATTCAAATGTCC
GACGTTTCTTGTGATATTTCATTAAAAGAATCTCGTTTTAAACGTAAAAA
GAGTTATTTTCAAGGTAAATATAATAGCCTTATGTAAGCGGCTGAAAAAG
ATATTCGAGTGCAG
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protein sequence of SMED30031220-orf-1

>SMED30031220-orf-1 ID=SMED30031220-orf-1|Name=SMED30031220-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=214bp
MNFLFYLMHSMEMNVFEDKRKNFEELNNILDNFFQFQTNNILDYESIVYS
QSFEDIIIICILIFYIYKSKFGLPEFLSQEEKRILCTLTSPLIGTTNFNL
PPSFEAFEKAISVVSNLDISPNISISSDDQLTSLNSPRKYRRLEDDLKFL
QNEFDIIQEEYYQIKSTSSKTVKKLESEKRELILKNKELIEKNEEYSLTN
SNLQKSIKKLEKE*
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protein sequence of SMED30031220-orf-2

>SMED30031220-orf-2 ID=SMED30031220-orf-2|Name=SMED30031220-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=408bp
MNESFFMEQLQILKAENKNLKNLIQEQNFLKATNWVENKDSEAEGSDNGV
IEVESEVGESLDIFYQKEIIQIKEEFEKKKNEFEKEKGILNINLCHEKST
VQSLQNQFDDLSNGNIKMTKEMEKISRELEDFKILYQSVIEELRELKQRF
DEKSIYYRNSIRSLSKKYLNLKRHYKQERHELIKREISDQTEINRLKVYC
NQIKTDLKSRIELLEIQKKNLNERISKSHRQLNENIEESNGILKLTIKRH
GWRKEHAVELLYTVNQLKDKCNEILNSNLIKPNPTNRYRYSSDSSERHST
NSPGSNIKISLRNSHIIGERNITNSLVTAQRKKYNESIATQDQEAITRVH
QADNLLPHKHSDRYRRTSTSTNTFSIQMSDVSCDISLKESRFKRKKSYFQ
GKYNSLM*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000418head
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 10..33
NoneNo IPR availableCOILSCoilCoilcoord: 204..238
NoneNo IPR availableCOILSCoilCoilcoord: 122..149
NoneNo IPR availableCOILSCoilCoilcoord: 66..93
NoneNo IPR availableCOILSCoilCoilcoord: 161..181
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 285..306