SMED30031196

Overview
NameSMED30031196
Smed IDSMED30031196
Length (bp)1789
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30031196 (SMED30031196) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30031196 (SMED30031196) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30031196 (SMED30031196) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30031196 (SMED30031196) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30031196

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 1

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
parenchymal cellSMED30031196SMESG000071516.1 dd_Smed_v4_18652_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30031196 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.006116:15170..16960 +8857
Homology
BLAST of SMED30031196 vs. Planmine SMEST
Match: SMESG000071516.1 (SMESG000071516.1)

HSP 1 Score: 892.878 bits (2306), Expect = 0.000e+0
Identity = 480/482 (99.59%), Postives = 481/482 (99.79%), Query Frame = 2
Query:  248 MIEQIQQYWIIILIRMFHYPIKCLLFVFLLFEKFDIDSSVGEVENICSIFHSVIIFLSISTQVFYLVRYFNSTNILRKVKIQNPPFLISNFIIGIFAVTCEYLEVVFFRESNNFYEILYKXXXXXXXXXXXXXXXXXXKWRPDPDERFSITLSIFSGYMTFICCVYSSIRCVLPDKRSKPKLQIFCSAFLFINSILIYNPLYGDIKTILKRQYYYENLDNTVAQTNTEIHTNLQSGLPLLNSMLNIFRKIQINFLTVFIGCYLLSILLYASFVCFQLDKNFIFKNMTNDSQNILVFYNECQISVYVILIIISMLYLHKIFQWKFEKNIRSNNDCWIVNIGTFGQVMEAITISYVSFIKLSDDCHLKFLYLSXXXXXXXXXXXXGQRFVILEILQRKVKKLRSRNYETNFFRRITINHCAVLCIANLGFVLINILHYSQAMDKIQMSKGRTWILIRCILVLISTLNRLHGFAFFLDVLLTDFE 1693
            MIEQIQQYWIIILIRMFHYPIKCLLFVFLLFEKFDIDSSVGEVENICSIFHSVIIFLSISTQVFYLVRYFNST+ILRKVKIQNPPFLISNFIIGIFAVTCEYLEVVFFRESNNFYEILYKFPLIAFDLLLFIFIPIFLKWRPDPDERFSITLSIFSGYMTFICCVYSSIRCVLPDKRSKPKLQIFCSAFLFINSILIYNPLYGDIKTILKRQYYYENLDNTVAQTNTEIHTNLQSGL LLNSMLNIFRKIQINFLTVFIGCYLLSILLYASFVCFQLDKNFIFKNMTNDSQNILVFYNECQISVYVILIIISMLYLHKIFQWKFEKNIRSNNDCWIVNIGTFGQVMEAITISYVSFIKLSDDCHLKFLYLSIVLNILQIIQIVGQRFVILEILQRKVKKLRSRNYETNFFRRITINHCAVLCIANLGFVLINILHYSQAMDKIQMSKGRTWILIRCILVLISTLNRLHGFAFFLDVLLTDFE
Sbjct:    1 MIEQIQQYWIIILIRMFHYPIKCLLFVFLLFEKFDIDSSVGEVENICSIFHSVIIFLSISTQVFYLVRYFNSTDILRKVKIQNPPFLISNFIIGIFAVTCEYLEVVFFRESNNFYEILYKFPLIAFDLLLFIFIPIFLKWRPDPDERFSITLSIFSGYMTFICCVYSSIRCVLPDKRSKPKLQIFCSAFLFINSILIYNPLYGDIKTILKRQYYYENLDNTVAQTNTEIHTNLQSGLSLLNSMLNIFRKIQINFLTVFIGCYLLSILLYASFVCFQLDKNFIFKNMTNDSQNILVFYNECQISVYVILIIISMLYLHKIFQWKFEKNIRSNNDCWIVNIGTFGQVMEAITISYVSFIKLSDDCHLKFLYLSIVLNILQIIQIVGQRFVILEILQRKVKKLRSRNYETNFFRRITINHCAVLCIANLGFVLINILHYSQAMDKIQMSKGRTWILIRCILVLISTLNRLHGFAFFLDVLLTDFE 482          
BLAST of SMED30031196 vs. Planmine SMEST
Match: SMESG000071518.1 (SMESG000071518.1)

HSP 1 Score: 155.606 bits (392), Expect = 4.549e-41
Identity = 153/494 (30.97%), Postives = 244/494 (49.39%), Query Frame = 2
Query:  248 MIEQIQQYWIIILIRMFHYPIKCLLFVFLLFEKFDIDSSVGEVENICSI-----FHSVIIFLSISTQVFYLVRYFNSTNILRKVKIQNPPFLISNFIIGIFAVTCEYLEVVFFRESNNFYEILYKXXXXXXXXXXXXXXXXXXKWRPDPDERFSITLSIFSGYMTFICCVYSSIRCVL------PDKRSKPKLQIFCSAFLFINSILIYNPLYGDIKTILKRQYYYENLDNTVAQTNTEIHTNLQSGLPLLNSMLNIFR-KIQINFLTVFIGCYLLSILLYASFVCFQLDKNFIFKNMTNDSQNILVFYNECQISVYVILIIISMLYLHKIFQWKFEKNIRSNNDCWIVNIGTFGQVMEA-ITISYVSFIKLSDDCHLKFLYLSXXXXXXXXXXXXG--QRFVILEILQRKVKK-LRSRNYETNFFRRITINHCAVLCIANLGFVLINILHYSQAMDKIQMSKGRTWILIRCILVLISTLNRLHGFAFFLDVLL 1681
            M+EQ QQYWI+I+IR+  + + CLL V L  E F      G   N  S+      +SV I   +S     + R  N     +  KI N PFLISN + G   +     E+      N       K  +I F  +LF ++P++LKWRPDP+E+ +I  SI SG+  ++CC++SS R +         + SK + ++F   FLF++SI I+   + D+  ++K Q+    L+N       EI  +     PL+    + F   ++ NF ++ IG   L  L+     C   ++  I+ N+T+ S +    Y    +++  I I  ++ YLH+I   K EK  RS  D +I+N GTF QV+EA + I Y            K LY  +++     + I    Q  +I EILQRKV   ++SR      F +  +N C VL + + GF++  +++Y   MD ++  K   W +IR + +    LNRLH F+  +D+ +
Sbjct:    1 MLEQSQQYWILIVIRILQFSVLCLLSVLLFNEGF------GNSNNRLSLDFQKGLYSVAILAMLSHIGLCIFRRGNG----KWCKIINLPFLISNMLFGFIGILYTIHEMESKAAPN-------KILMIIFIFILFFYLPLYLKWRPDPNEKLTIISSILSGFSVYLCCLFSSCRYIAFSIFSESPQTSKKEFRLFSIFFLFVSSIFIFFSTHEDVNEVVKMQHTLSCLNNV---HEDEIGLDENEADPLIPKNKSEFTMPLKNNFFSIVIGIGCLIALVIVESSC--RNRYSIYLNITDGSNSKCYSYYNNTVAICTISIAFTLWYLHEILYCKVEKQPRSKIDGFILNFGTFFQVIEAMLNIHYA-----------KKLYFPMLVVANVFLIIQQLFQWALIHEILQRKVDFFMKSRRTRKIIFWKRYLNPCLVLWLISFGFLVAELINYVNTMDMLEKQKIEFWKIIRSVFIPFKILNRLHSFSVLIDIFI 461          
BLAST of SMED30031196 vs. Planmine SMEST
Match: SMESG000031950.1 (SMESG000031950.1)

HSP 1 Score: 110.538 bits (275), Expect = 1.671e-25
Identity = 139/511 (27.20%), Postives = 245/511 (47.95%), Query Frame = 2
Query:  251 IEQIQQYWIIILIRMFHYPIKCLLFVFLLFEKFDIDSSVGEVENICSIFHSVIIFLSISTQVFYLVRYFNSTNILRKVKIQNPPFLISNFIIGIFAVTCEYLEVVF---FRESNNFYEILYKXXXXXXXXXXXXXXXXXXKWRPDPDERFSITLSIFSGYMTFICCVY-------SSIRCVLPDKRSKP----------------KLQIFCSAFLFINSILIYNPLYGDIKTILKRQYYYENLDN-TVAQTNTEIHTNLQSGLPLLNSMLNIFRKIQINFLTVFIGCYLLSILLYASFVCFQLDKNFIFKNMTNDSQNILVFYNECQISV---YVILIIISMLYLHKIFQWKFEKNIRSNNDCWIVNIGTFGQVMEAIT--ISYVSFIKLSDDCHLKFL--YLSXXXXXXXXXXXXGQRFVILEILQRKVKKLRSRNYETNFFRRITINHCAVLCIANLGFVLINILHYSQAMDKIQMSKGRTWILIRCILVLISTLNRLHGFAFFLDVLL 1681
            + QI QY+ II+++  +Y   C + VF + E   +D+ +    ++ ++F +     SI++   YL+ +  S N   K+  +NP   +S   +GIF V  +  ++     F +    Y+ +     I F L+L  ++ I  +WRPDPDERFS  L+I SG ++FI C++         I+ +L  +++                  +LQIF   F+ +++ILIY     + K  +KRQ +Y  LDN  ++  NT+ H  L              R   + +L  +    L+S +L A F    L  N ++ +M   +Q    +    +I +   +++ I +S+  L  I  +  EK IRS  D +I + GT+ QV   I     ++SF  + ++    FL  Y+ I+ NI +I+Q + Q+F++ EILQR ++ +  +  +     R  ++ C  LC  N   ++   + Y   +DKI  S   T  LI  +      +NRLHGF   L++++
Sbjct:    1 MNQIHQYYFIIILKFLYYIFFCFITVFTVLETERLDNYINHFNHLINVFQTTFNLASIASISLYLIGFVKSGNKGYKIHFENPVLFLSIIFVGIFTVIRDSFKLYTTYKFPKCAIQYDTINDSVNILFTLILLPYLTIVSQWRPDPDERFSSLLAIGSGILSFISCLFILCQNFAKRIQVILKLEKTDECNLLNDDHHLYEDFLTQLQIFKLTFVTLSAILIYYRFKFNNKKFIKRQIFYTYLDNQNISVNNTKAHLQLPKSPN---------RCKLMEWLKSYKMPLLISGILSAIF----LSINCLY-SMPMTTQEHYHWNRMAEIIITLLHLVNIFLSIWTLIVINNFVIEKKIRSKMDSFITDYGTYAQVYIGIIHCAYFLSFNAIKNENDQSFLNKYI-IISNIFRIVQAITQQFLVNEILQRIIRPISDQEVKYKKIFRNYLSLCIFLCFMNFVLMVNIFVDYFLKIDKIG-SHTFTLNLIN-LWFPWELINRLHGFCVLLNLVV 494          
BLAST of SMED30031196 vs. Planmine SMEST
Match: SMESG000027067.1 (SMESG000027067.1)

HSP 1 Score: 55.4546 bits (132), Expect = 8.716e-8
Identity = 51/204 (25.00%), Postives = 95/204 (46.57%), Query Frame = 2
Query: 1091 IFKNMTNDSQNILVFYNECQISVYVILIIISMLYLHKIFQWKFEKNIRSNNDCWIVNIGTFGQVMEAITISYVSF-IKLSDDCHLKFLYLSXXXXXXXXXXXXG---QRFVILEILQRKVKKLRSRNYETNFFRRITINHCAVLCIANLGFVLINILHYSQAMDKIQMSKGRTWILIRCILVLISTLNRLHGFAFFLDVLLTDF 1690
            IF   ++D   I + Y   +I +Y++ I   +L   ++ +W+ E       D   + IGTFGQ +    +   +F + +  DC     Y++++      +QI     Q ++I EI  R V ++ S +++              LC+ NL F L N++        IQM   + W++   ++  +  +NRLH FAFF ++L  ++
Sbjct:  310 IFLIYSDDKVKIHIAYQAVKIIIYLLFIGTFILLWCQLLKWRIEITPLLQIDNLFLKIGTFGQALNGCLVLISAFYVIVHKDCDRTVKYINVLWATSNFMQIFQSIFQMYLIREISNRSVTRVASVHWKP---------LALFLCVMNLSFALENLIMKPMT---IQMY-NKAWVVADMLINPLRFINRLHAFAFFANILAENY 500          
The following BLAST results are available for this feature:
BLAST of SMED30031196 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031196 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031196 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031196 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031196 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031196 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031196 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031196 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031196 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031196 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031196 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031196 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031196 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30031196 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 4
Match NameE-valueIdentityDescription
SMESG000071516.10.000e+099.59SMESG000071516.1[more]
SMESG000071518.14.549e-4130.97SMESG000071518.1[more]
SMESG000031950.11.671e-2527.20SMESG000031950.1[more]
SMESG000027067.18.716e-825.00SMESG000027067.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30031196 ID=SMED30031196|Name=SMED30031196|organism=Schmidtea mediterranea sexual|type=transcript|length=1789bp
AACATGAAAATTAATTACTAAATAATATTAAATTTTATTATTACACTAAA
AAACAATAAATAAAATGAGATAAAGCTAACAGTTAGTGCAATTGATAGTG
CAATCAACGTCATACATATCAATTGTGGTTTTGGTATATTATTGTTTATG
TTTTACATTGGTCAGAAGCCAGACAGGATGTGAAGCATTGATTGTATGCT
CGAGGGTTTGTATACAAAATCGAATCAAATCAACAAATCAACACAAAATG
ATTGAACAAATCCAGCAATATTGGATCATAATTCTCATTCGAATGTTCCA
CTATCCGATAAAATGTCTATTATTCGTATTCCTGTTGTTTGAAAAATTTG
ATATAGATAGTTCCGTTGGAGAAGTAGAAAATATTTGCTCGATATTCCAT
TCTGTGATAATCTTTCTATCAATATCAACACAAGTTTTCTATTTGGTTCG
ATATTTTAATTCAACTAATATCCTTAGAAAAGTCAAAATACAAAATCCGC
CATTTTTAATTTCAAACTTCATAATTGGAATTTTCGCTGTAACATGCGAG
TATTTAGAAGTGGTTTTCTTTCGAGAATCGAATAACTTTTATGAAATTTT
GTATAAATTTCCACTAATTGCATTCGATTTGTTGCTTTTTATTTTTATTC
CCATTTTTCTAAAATGGCGCCCAGACCCCGATGAAAGATTTTCTATAACA
TTATCAATTTTCTCTGGATATATGACATTCATATGTTGCGTATACAGTTC
GATTCGATGTGTTCTACCAGACAAGCGTTCCAAGCCGAAATTGCAAATCT
TTTGTTCAGCTTTTCTTTTCATAAATAGCATTTTAATATACAATCCATTG
TATGGAGACATAAAAACGATATTGAAACGCCAATACTATTACGAGAATCT
CGATAATACTGTCGCTCAAACCAATACTGAAATTCACACGAATTTACAAT
CGGGATTGCCACTATTGAATTCTATGTTGAATATATTCCGTAAAATTCAA
ATCAATTTTCTGACGGTTTTCATTGGCTGTTATCTGCTTTCAATTCTGTT
ATATGCATCATTTGTTTGTTTCCAATTGGATAAGAATTTCATATTCAAAA
ACATGACAAATGATTCCCAAAATATTCTCGTGTTCTACAATGAATGTCAA
ATCAGTGTTTATGTCATTTTGATAATCATATCGATGTTGTATCTGCATAA
GATTTTTCAATGGAAATTCGAGAAAAACATTCGTTCGAATAATGATTGTT
GGATTGTCAATATTGGAACGTTTGGACAAGTAATGGAAGCTATAACCATC
AGTTATGTTTCCTTTATTAAATTATCCGATGATTGCCATTTGAAATTTTT
ATATTTATCCATAGTGTTAAATATTTTACAGATCATTCAAATCGTTGGCC
AGAGATTTGTCATTTTGGAAATTCTTCAACGGAAAGTAAAGAAATTACGA
TCGAGAAACTACGAAACGAATTTTTTCCGGAGAATTACAATTAATCATTG
TGCGGTTTTGTGCATAGCAAATCTCGGATTTGTTTTAATAAATATCTTAC
ATTACAGTCAAGCCATGGACAAAATTCAAATGTCGAAGGGGCGTACTTGG
ATTTTAATCAGATGTATTTTAGTATTAATTTCCACTCTCAATCGGTTGCA
CGGGTTTGCTTTTTTTCTTGATGTTTTGTTAACAGATTTTGAATGATATG
CAAGAATATTTTTAAATTTAGATTTATGCTTAGATTTTTCTTTTAGATTT
ATCTTATCTGTAAATTAACTATATAATAAAGTTATCACT
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protein sequence of SMED30031196-orf-1

>SMED30031196-orf-1 ID=SMED30031196-orf-1|Name=SMED30031196-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=483bp
MIEQIQQYWIIILIRMFHYPIKCLLFVFLLFEKFDIDSSVGEVENICSIF
HSVIIFLSISTQVFYLVRYFNSTNILRKVKIQNPPFLISNFIIGIFAVTC
EYLEVVFFRESNNFYEILYKFPLIAFDLLLFIFIPIFLKWRPDPDERFSI
TLSIFSGYMTFICCVYSSIRCVLPDKRSKPKLQIFCSAFLFINSILIYNP
LYGDIKTILKRQYYYENLDNTVAQTNTEIHTNLQSGLPLLNSMLNIFRKI
QINFLTVFIGCYLLSILLYASFVCFQLDKNFIFKNMTNDSQNILVFYNEC
QISVYVILIIISMLYLHKIFQWKFEKNIRSNNDCWIVNIGTFGQVMEAIT
ISYVSFIKLSDDCHLKFLYLSIVLNILQIIQIVGQRFVILEILQRKVKKL
RSRNYETNFFRRITINHCAVLCIANLGFVLINILHYSQAMDKIQMSKGRT
WILIRCILVLISTLNRLHGFAFFLDVLLTDFE*
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InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableTMHMMTMhelixcoord: 451..473
NoneNo IPR availableTMHMMTMhelixcoord: 123..140
NoneNo IPR availableTMHMMTMhelixcoord: 409..431
NoneNo IPR availableTMHMMTMhelixcoord: 367..389
NoneNo IPR availableTMHMMTMhelixcoord: 9..31
NoneNo IPR availableTMHMMTMhelixcoord: 335..357
NoneNo IPR availableTMHMMTMhelixcoord: 293..315
NoneNo IPR availableTMHMMTMhelixcoord: 86..108
NoneNo IPR availableTMHMMTMhelixcoord: 251..273
NoneNo IPR availableTMHMMTMhelixcoord: 184..203
NoneNo IPR availableTMHMMTMhelixcoord: 147..169
NoneNo IPR availableTMHMMTMhelixcoord: 46..66