Rho GTPase-activating protein 20
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30031095 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 8
Homology
BLAST of Rho GTPase-activating protein 20 vs. Ensembl Celegans
Match: rga-2 (Rho GTPase Activating protein [Source:UniProtKB/TrEMBL;Acc:Q9XW53]) HSP 1 Score: 53.9138 bits (128), Expect = 4.500e-7 Identity = 48/157 (30.57%), Postives = 81/157 (51.59%), Query Frame = 1 Query: 919 PKWLTRLLSDIYSDGPDSKGVFRLNAKDSSFSKWYKHMLDCN-DFIISEDIFNK------AAIFKFFLRNIEGSLMTKNTRKQLNGLCKKFM-EISFEEFFKNSKKQSKFIKLFQSLPKTHYFLFQNILVVLNAIIDSPNAKVEPFAIARAIAPSIF 1365 P+ + ++ + DG D++G+FR + K S+F + L C D + D F+K A+I K +LR+I G ++ L+G + +M EI+ E KK S L LP +H L N+L +LN I +SP++K+ +++ +APS Sbjct: 264 PQPIMTIVDHLRMDGFDAEGIFRKSPKQSTFKE-----LKCELDKGVVPD-FHKYNTHVLASILKEYLRSIPGKIL-------LSGNYELWMREIADEP--NTEKKVSCCRALLSHLPTSHSILLANVLKLLNKISNSPSSKMNASSLSVCLAPSFL 405
BLAST of Rho GTPase-activating protein 20 vs. Ensembl Xenopus
Match: trhd (tumorhead [Source:Xenbase;Acc:XB-GENE-1214876]) HSP 1 Score: 65.855 bits (159), Expect = 2.910e-10 Identity = 44/156 (28.21%), Postives = 83/156 (53.21%), Query Frame = 1 Query: 910 GEMPKWLTRLLSDIYSDGPDSKGVFRLNAKDSSFSKWYKHMLDCNDFII-SEDIFNKAAIFKFFLRNIEGSLMTKNTRKQLNGLCKKFMEISFEEFFKNSKKQSKFIKLFQSLPKTHYFLFQNILVVLNAI-IDSPNAKVEPFAIARAIAPSIFPL 1371 G +PK + +L +Y +GP++KG+FR +A ++ + + ++ ++ I E +F AA+ FLRNI S+++ + + GL + EI E+ K +L + LP+ ++ L Q++ VL+ I S ++ F +A IAP++ L Sbjct: 365 GNLPKPIMDMLLLLYEEGPNTKGIFRRSANAKTWKELKEKLISGDEVQIDGESVFVAAAVITDFLRNIPDSILSSD----MYGLWMEATEIEQHEY-----KIDIIKRLLEQLPEANFILLQHLFGVLHHIEKKSEENQMTAFNLALCIAPTMLWL 511
BLAST of Rho GTPase-activating protein 20 vs. Ensembl Xenopus
Match: gapvd1 (GTPase activating protein and VPS9 domains 1 [Source:Xenbase;Acc:XB-GENE-997388]) HSP 1 Score: 53.5286 bits (127), Expect = 1.622e-6 Identity = 46/153 (30.07%), Postives = 77/153 (50.33%), Query Frame = 1 Query: 916 MPKWLTRLLSDIYSDGPDSKGVFRLNAKDSSFSKWYKHMLD--CNDFIISEDIFNKAAIFKFFLRNIEGSLMTKNTRKQLNGLCKKFMEISFEEFFKNSKKQSKFIKLFQSLPKTHYFLFQNILVVLNAIID-SPNAKVEPFAIARAIAPSIF 1365 +PK + +L + DGP ++G+FR +A S + K LD C E I A++FK FLRNI GS+ + + L +K++ + E ++ K K L ++LP+ + L + + VL I S + ++ F +A IAPS+ Sbjct: 376 IPKPVMDMLCVLCRDGPFTRGIFRRSANAKS-CREMKERLDSGCEINFERESILVTASVFKDFLRNIPGSIFS-------SKLYEKWVSVLAYESQEDKIKAVKM--LIETLPQINVLLLRYLFGVLYCIEQRSESNQMSAFNLAVCIAPSLL 518
BLAST of Rho GTPase-activating protein 20 vs. Ensembl Xenopus
Match: gapvd1 (GTPase activating protein and VPS9 domains 1 [Source:Xenbase;Acc:XB-GENE-997388]) HSP 1 Score: 52.7582 bits (125), Expect = 2.639e-6 Identity = 46/153 (30.07%), Postives = 76/153 (49.67%), Query Frame = 1 Query: 916 MPKWLTRLLSDIYSDGPDSKGVFRLNAKDSSFSKWYKHMLD--CNDFIISEDIFNKAAIFKFFLRNIEGSLMTKNTRKQLNGLCKKFMEISFEEFFKNSKKQSKFIKLFQSLPKTHYFLFQNILVVLNAIID-SPNAKVEPFAIARAIAPSIF 1365 +PK + +L + DGP ++G+FR +A S + K LD C E I A++FK FLRNI GS+ + L +K++ + E ++ K K L ++LP+ + L + + VL I S + ++ F +A IAPS+ Sbjct: 316 IPKPVMDMLCVLCRDGPFTRGIFRRSANAKS-CREMKERLDSGCEINFERESILVTASVFKDFLRNIPGSIFSSK-------LYEKWVSVLAYESQEDKIKAVKM--LIETLPQINVLLLRYLFGVLYCIEQRSESNQMSAFNLAVCIAPSLL 458
BLAST of Rho GTPase-activating protein 20 vs. Ensembl Xenopus
Match: gapvd1 (GTPase activating protein and VPS9 domains 1 [Source:Xenbase;Acc:XB-GENE-997388]) HSP 1 Score: 52.7582 bits (125), Expect = 2.901e-6 Identity = 46/153 (30.07%), Postives = 77/153 (50.33%), Query Frame = 1 Query: 916 MPKWLTRLLSDIYSDGPDSKGVFRLNAKDSSFSKWYKHMLD--CNDFIISEDIFNKAAIFKFFLRNIEGSLMTKNTRKQLNGLCKKFMEISFEEFFKNSKKQSKFIKLFQSLPKTHYFLFQNILVVLNAIID-SPNAKVEPFAIARAIAPSIF 1365 +PK + +L + DGP ++G+FR +A S + K LD C E I A++FK FLRNI GS+ + + L +K++ + E ++ K K L ++LP+ + L + + VL I S + ++ F +A IAPS+ Sbjct: 316 IPKPVMDMLCVLCRDGPFTRGIFRRSANAKS-CREMKERLDSGCEINFERESILVTASVFKDFLRNIPGSIFS-------SKLYEKWVSVLAYESQEDKIKAVKM--LIETLPQINVLLLRYLFGVLYCIEQRSESNQMSAFNLAVCIAPSLL 458
BLAST of Rho GTPase-activating protein 20 vs. TrEMBL
Match: H0ZLY7 (Rho-GAP domain-containing protein OS=Taeniopygia guttata OX=59729 PE=4 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 5.240e-10 Identity = 51/153 (33.33%), Postives = 80/153 (52.29%), Query Frame = 1 Query: 916 MPKWLTRLLSDIYSDGPDSKGVFRLNAKDSSFSKWYKHMLDCNDFI--ISEDIFNKAAIFKFFLRNIEGSLMTKNTRKQLNGLCKKFMEISFEEFFKNSKKQSKFIKLFQSLPKTHYFLFQNILVVLNAI-IDSPNAKVEPFAIARAIAPSIF 1365 +PK L +LS +Y +GP +KG+FR + +F K K LD + E IF A++FK FLRNI GS+++ LC K+ +S + N +K +L + LP+ + L + I VL+ I + S ++ F +A IAPS+ Sbjct: 17 LPKPLLDMLSLLYQEGPSTKGIFRRSGNAKTF-KELKEKLDSGTEVDLARESIFVTASLFKDFLRNIPGSILSSQ-------LCDKW--VSVLDQGNNEEKIKSIQRLIEHLPRANVVLLRYIFGVLHGIEMRSEENQMNAFNLAVCIAPSLL 159
BLAST of Rho GTPase-activating protein 20 vs. TrEMBL
Match: U3K292 (Rho GTPase activating protein 20 OS=Ficedula albicollis OX=59894 GN=ARHGAP20 PE=4 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.040e-9 Identity = 74/261 (28.35%), Postives = 122/261 (46.74%), Query Frame = 1 Query: 916 MPKWLTRLLSDIYSDGPDSKGVFRLNAKDSSFSKWYKHMLDCNDFI--ISEDIFNKAAIFKFFLRNIEGSLMTKNTRKQLNGLCKKFMEISFEEFFKNSKKQSKFIKLFQSLPKTHYFLFQNILVVLNAI-IDSPNAKVEPFAIARAIAPSIF-------PLVRLSYWGNISNLLEAAI------------YLTDKIVKPADRKRIID---------SYIKVKNESNNIKNESRNDSQTFVENDSMTLSSI---TESDSKQ 1596 +PK L +LS +Y +GP +KG+FR + +F K K LD + E IF A++FK FLRNI GS+++ LC K+ IS + N +K +L + LP+ + L + I VL+ I + S ++ F +A IAPS+ P + Y IS+L++ I L +I+ R+ D SY ++NE+N+ + S +D + D+ + S+ ++ DS+Q Sbjct: 376 LPKPLLDMLSLLYQEGPSTKGIFRRSGSAKTF-KELKEKLDSGTEVDLARESIFVTASLFKDFLRNIPGSILSSQ-------LCDKW--ISVLDQGNNEEKIKSIQRLIEHLPRANVVLLRYIFGVLHGIEMRSEENQMNAFNLAVCIAPSLLWPPVSSTPDIESEYIKKISSLVQFLIENCCRIFGDEITSLFGEILMTCKRENSSDVASLHQNDSSYDSLENEANDEADSSSSDWIKTRDQDNRSRESVFTLSDGDSEQ 626
BLAST of Rho GTPase-activating protein 20 vs. TrEMBL
Match: A0A218UTQ4 (Rho GTPase-activating protein 20 OS=Lonchura striata domestica OX=299123 GN=ARHGAP20_0 PE=4 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.401e-9 Identity = 51/153 (33.33%), Postives = 80/153 (52.29%), Query Frame = 1 Query: 916 MPKWLTRLLSDIYSDGPDSKGVFRLNAKDSSFSKWYKHMLDCNDFI--ISEDIFNKAAIFKFFLRNIEGSLMTKNTRKQLNGLCKKFMEISFEEFFKNSKKQSKFIKLFQSLPKTHYFLFQNILVVLNAI-IDSPNAKVEPFAIARAIAPSIF 1365 +PK L +LS +Y +GP +KG+FR + +F K K LD + E IF A++FK FLRNI GS+++ LC K+ +S + N +K +L + LP+ + L + I VL+ I + S ++ F +A IAPS+ Sbjct: 375 LPKPLLDMLSLLYQEGPSTKGIFRRSGSAKTF-KELKEKLDLGTEVDLARESIFVTASLFKDFLRNIPGSILSSQ-------LCDKW--VSVLDQGNNEEKIKSIQRLIEHLPRANVVLLRYIFGVLHGIEMRSEENQMNAFNLAVCIAPSLL 517
BLAST of Rho GTPase-activating protein 20 vs. TrEMBL
Match: A0A093J0F8 (Rho GTPase-activating protein 20 (Fragment) OS=Eurypyga helias OX=54383 GN=N326_11208 PE=4 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 7.553e-9 Identity = 49/153 (32.03%), Postives = 79/153 (51.63%), Query Frame = 1 Query: 916 MPKWLTRLLSDIYSDGPDSKGVFRLNAKDSSFSKWYKHMLDCNDFI--ISEDIFNKAAIFKFFLRNIEGSLMTKNTRKQLNGLCKKFMEISFEEFFKNSKKQSKFIKLFQSLPKTHYFLFQNILVVLNAI-IDSPNAKVEPFAIARAIAPSIF 1365 +PK L +LS +Y +GP ++G+FR + + K K LD + E IF A++FK FLRNI GS+++ LC K+ +S + N +K +L + LP+ + L + I VL+ I + S ++ F +A IAPS+ Sbjct: 17 LPKPLLDMLSLLYQEGPSTEGIFR-RSGSAKTCKELKEKLDSGAEVDLACESIFVTASLFKDFLRNIPGSILSSQ-------LCDKW--VSVMDQGNNEEKIKSIQRLIEQLPRANVVLLRYIFGVLHGIEMRSEENQMNAFNLAICIAPSLL 159
BLAST of Rho GTPase-activating protein 20 vs. TrEMBL
Match: A0A2P4T5M9 (Uncharacterized protein (Fragment) OS=Bambusicola thoracicus OX=9083 GN=CIB84_004620 PE=4 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.084e-8 Identity = 57/187 (30.48%), Postives = 93/187 (49.73%), Query Frame = 1 Query: 916 MPKWLTRLLSDIYSDGPDSKGVFRLNAKDSSFSKWYKHMLDCNDFI--ISEDIFNKAAIFKFFLRNIEGSLMTKNTRKQLNGLCKKFMEISFEEFFKNSKKQSKFIKLFQSLPKTHYFLFQNILVVLNAI-IDSPNAKVEPFAIARAIAPSIF-------PLVRLSYWGNISNLLEAAIYLTDKIVK 1446 +PK L +LS +Y +GP ++G+FR + + K K LD + E IF A++FK FLRNI GS++T LC K+ +S + N +K +L + LP+ + L + I VL+ I + S ++ F +A IAPS+ P + + IS+L++ +LT+ K Sbjct: 161 LPKPLLDMLSLLYQEGPSTEGIFR-RSGSAKTCKELKEKLDSGAEVDLACESIFVTASLFKDFLRNIPGSILTSQ-------LCDKW--VSVMDQGNNEEKIKSIQRLIEQLPRANVVLLRYIFGVLHGIEMRSEENQMNAFNLAICIAPSLLWPPASSTPDIESEFTKKISSLVQ---FLTENCCK 334
BLAST of Rho GTPase-activating protein 20 vs. Ensembl Cavefish
Match: ENSAMXT00000053633.1 (rho GTPase-activating protein 20-like [Source:NCBI gene;Acc:103036999]) HSP 1 Score: 52.7582 bits (125), Expect = 1.813e-6 Identity = 44/151 (29.14%), Postives = 76/151 (50.33%), Query Frame = 1 Query: 916 MPKWLTRLLSDIYSDGPDSKGVFRLNAKDSSFSKWYKHMLDCN--DFIIS-EDIFNKAAIFKFFLRNIEGSLMTKNTRKQLNGLCKKFMEISFEEFFKNSKKQSKFIKLFQSLPKTHYFLFQNILVVL-NAIIDSPNAKVEPFAIARAIAP 1356 +PK + +L +Y +GP ++G+FR +A + + + +LD D ++ + IF AA+FK FLR+I GSL+ L+ L +K+M + L SLP + L ++IL VL N + + ++ F +A I+P Sbjct: 375 LPKPIMDMLVFLYQEGPFTRGIFRRSA-GAKACRELRDILDSGFQDIQLARQSIFVIAAVFKDFLRSIPGSLL-------LSDLYEKWMATMDSSDEAEDNQLQAIQSLVTSLPSENILLLKHILAVLYNIQLRAEENQMNAFNLAVCISP 517
BLAST of Rho GTPase-activating protein 20 vs. Planmine SMEST
Match: SMESG000074055.1 (SMESG000074055.1) HSP 1 Score: 1408.66 bits (3645), Expect = 0.000e+0 Identity = 743/749 (99.20%), Postives = 747/749 (99.73%), Query Frame = 1 Query: 130 MRMNQSKLKINPFNKMDRDFKYDARQLIKVFDKESKSYIFNVSDIKIKLSKDRVXXXXXXXXXXXXXXDLCMKHALISRATDVATPKIDSCRLISDPSGYEVLLNFKSPSIASEYESKFSESMRMYNTKFANICFDVNVTNLVNDKLKESANVSLSGLTLGKDLKSWIEQEFIFPDIHMPCYILQLHVGEELLTIRDDATILQVHEHAAYSHAKGHCFIGCFYESVKPNSTLLIEINFYNHTIEYENGQIPYSIEEKWGVGEMPKWLTRLLSDIYSDGPDSKGVFRLNAKDSSFSKWYKHMLDCNDFIISEDIFNKAAIFKFFLRNIEGSLMTKNTRKQLNGLCKKFMEISFEEFFKNSKKQSKFIKLFQSLPKTHYFLFQNILVVLNAIIDSPNAKVEPFAIARAIAPSIFPLVRLSYWGNISNLLEAAIYLTDKIVKPADRKRIIDSYIKVKNESNNIKNESRNDSQTFVENDSMTLSSITESDSKQQNLISCDKLSDCELEKESDIENFSQDSILXXXXXXXXXXXXXXXXXCDYLKKENIQNLPQTSSEKQSETVDRNICEIESSEMISKLPNTKNICMGVKMKQIYRSCSKFTESEFQIESDHVKEKLSPVLRNEKKTVGQRHKSLIQSDSLGKALDRNNFEFNQSDFNMEKDNIKENFSPVLRKETKNIGQRHRSLIQQDSSMKPLDXXXXXXXXXXXXEFPVKRKHSRKALSAVSELNNNNNHRSRSPYVKKLIKLYENKKQ 2376 MRMNQSKLKINPFNKMDRDFKYDARQLIKVFDKESKSYIFNVSDIKIKLSKDRVKLYLIKKIEEKLILDLCMKHALISRATDVA PKIDSCRLISDPSGYEVLLNFKSPSIASEYESKFSESMRMYNTKFANICFDVNVTNLVNDKLKESANVSLSGLTLGKDLKSWIEQEFIFPDIHMPCYILQLHVGEELLTIRDDATILQVHEHAAYSHAKGHCFIGCFYESVKPNSTLLIEINFYNHTIEYENGQIPYSIEEKWGVGEMPKWLTRLLSDIY DGPDSKGVFRLNAKDSSFSKWYKHMLDC+DFIISEDIFNKAAIFKFFLRNIEGSLMTKNTRKQLNGLCKKFMEISFEEFFKNSKKQSKFIKLFQSLPKTHYFLFQNILVVLNAIIDSPNAKVEPFAIARAIAPSIFPLVRLSYWGNISNLLEAAIYLTDKIVKPAD+KRIIDSYIKVKNESNNIKNESRNDSQTFVENDSMTLSSITESDSKQQN+ISCDKLSDCELEKESDIENFSQDSILSDNVSSSDIESDSSYKSCDYLKKENIQNLPQTSSEKQSETVDRNICEIESSEMISKLPNTKNICMGVKMKQIYRSCSKFTESEFQIE+DHVKEKLSPVLRNEKKTVGQRHKSLIQSDSLGKALDRNNFEFNQSDFNMEKDNIKENFSPVLRKETKNIGQRHRSLIQQDSSMKPLDVMSPISSSSMPVEFPVKRKHSRKALSAVSELNNNNNHRSRSPYVKKLIKLYENKKQ Sbjct: 1 MRMNQSKLKINPFNKMDRDFKYDARQLIKVFDKESKSYIFNVSDIKIKLSKDRVKLYLIKKIEEKLILDLCMKHALISRATDVAIPKIDSCRLISDPSGYEVLLNFKSPSIASEYESKFSESMRMYNTKFANICFDVNVTNLVNDKLKESANVSLSGLTLGKDLKSWIEQEFIFPDIHMPCYILQLHVGEELLTIRDDATILQVHEHAAYSHAKGHCFIGCFYESVKPNSTLLIEINFYNHTIEYENGQIPYSIEEKWGVGEMPKWLTRLLSDIYCDGPDSKGVFRLNAKDSSFSKWYKHMLDCDDFIISEDIFNKAAIFKFFLRNIEGSLMTKNTRKQLNGLCKKFMEISFEEFFKNSKKQSKFIKLFQSLPKTHYFLFQNILVVLNAIIDSPNAKVEPFAIARAIAPSIFPLVRLSYWGNISNLLEAAIYLTDKIVKPADKKRIIDSYIKVKNESNNIKNESRNDSQTFVENDSMTLSSITESDSKQQNMISCDKLSDCELEKESDIENFSQDSILSDNVSSSDIESDSSYKSCDYLKKENIQNLPQTSSEKQSETVDRNICEIESSEMISKLPNTKNICMGVKMKQIYRSCSKFTESEFQIENDHVKEKLSPVLRNEKKTVGQRHKSLIQSDSLGKALDRNNFEFNQSDFNMEKDNIKENFSPVLRKETKNIGQRHRSLIQQDSSMKPLDVMSPISSSSMPVEFPVKRKHSRKALSAVSELNNNNNHRSRSPYVKKLIKLYENKKQ 749
BLAST of Rho GTPase-activating protein 20 vs. Planmine SMEST
Match: SMESG000074055.1 (SMESG000074055.1) HSP 1 Score: 1403.27 bits (3631), Expect = 0.000e+0 Identity = 741/747 (99.20%), Postives = 745/747 (99.73%), Query Frame = 1 Query: 136 MNQSKLKINPFNKMDRDFKYDARQLIKVFDKESKSYIFNVSDIKIKLSKDRVXXXXXXXXXXXXXXDLCMKHALISRATDVATPKIDSCRLISDPSGYEVLLNFKSPSIASEYESKFSESMRMYNTKFANICFDVNVTNLVNDKLKESANVSLSGLTLGKDLKSWIEQEFIFPDIHMPCYILQLHVGEELLTIRDDATILQVHEHAAYSHAKGHCFIGCFYESVKPNSTLLIEINFYNHTIEYENGQIPYSIEEKWGVGEMPKWLTRLLSDIYSDGPDSKGVFRLNAKDSSFSKWYKHMLDCNDFIISEDIFNKAAIFKFFLRNIEGSLMTKNTRKQLNGLCKKFMEISFEEFFKNSKKQSKFIKLFQSLPKTHYFLFQNILVVLNAIIDSPNAKVEPFAIARAIAPSIFPLVRLSYWGNISNLLEAAIYLTDKIVKPADRKRIIDSYIKVKNESNNIKNESRNDSQTFVENDSMTLSSITESDSKQQNLISCDKLSDCELEKESDIENFSQDSILXXXXXXXXXXXXXXXXXCDYLKKENIQNLPQTSSEKQSETVDRNICEIESSEMISKLPNTKNICMGVKMKQIYRSCSKFTESEFQIESDHVKEKLSPVLRNEKKTVGQRHKSLIQSDSLGKALDRNNFEFNQSDFNMEKDNIKENFSPVLRKETKNIGQRHRSLIQQDSSMKPLDXXXXXXXXXXXXEFPVKRKHSRKALSAVSELNNNNNHRSRSPYVKKLIKLYENKKQ 2376 MNQSKLKINPFNKMDRDFKYDARQLIKVFDKESKSYIFNVSDIKIKLSKDRVKLYLIKKIEEKLILDLCMKHALISRATDVA PKIDSCRLISDPSGYEVLLNFKSPSIASEYESKFSESMRMYNTKFANICFDVNVTNLVNDKLKESANVSLSGLTLGKDLKSWIEQEFIFPDIHMPCYILQLHVGEELLTIRDDATILQVHEHAAYSHAKGHCFIGCFYESVKPNSTLLIEINFYNHTIEYENGQIPYSIEEKWGVGEMPKWLTRLLSDIY DGPDSKGVFRLNAKDSSFSKWYKHMLDC+DFIISEDIFNKAAIFKFFLRNIEGSLMTKNTRKQLNGLCKKFMEISFEEFFKNSKKQSKFIKLFQSLPKTHYFLFQNILVVLNAIIDSPNAKVEPFAIARAIAPSIFPLVRLSYWGNISNLLEAAIYLTDKIVKPAD+KRIIDSYIKVKNESNNIKNESRNDSQTFVENDSMTLSSITESDSKQQN+ISCDKLSDCELEKESDIENFSQDSILSDNVSSSDIESDSSYKSCDYLKKENIQNLPQTSSEKQSETVDRNICEIESSEMISKLPNTKNICMGVKMKQIYRSCSKFTESEFQIE+DHVKEKLSPVLRNEKKTVGQRHKSLIQSDSLGKALDRNNFEFNQSDFNMEKDNIKENFSPVLRKETKNIGQRHRSLIQQDSSMKPLDVMSPISSSSMPVEFPVKRKHSRKALSAVSELNNNNNHRSRSPYVKKLIKLYENKKQ Sbjct: 1 MNQSKLKINPFNKMDRDFKYDARQLIKVFDKESKSYIFNVSDIKIKLSKDRVKLYLIKKIEEKLILDLCMKHALISRATDVAIPKIDSCRLISDPSGYEVLLNFKSPSIASEYESKFSESMRMYNTKFANICFDVNVTNLVNDKLKESANVSLSGLTLGKDLKSWIEQEFIFPDIHMPCYILQLHVGEELLTIRDDATILQVHEHAAYSHAKGHCFIGCFYESVKPNSTLLIEINFYNHTIEYENGQIPYSIEEKWGVGEMPKWLTRLLSDIYCDGPDSKGVFRLNAKDSSFSKWYKHMLDCDDFIISEDIFNKAAIFKFFLRNIEGSLMTKNTRKQLNGLCKKFMEISFEEFFKNSKKQSKFIKLFQSLPKTHYFLFQNILVVLNAIIDSPNAKVEPFAIARAIAPSIFPLVRLSYWGNISNLLEAAIYLTDKIVKPADKKRIIDSYIKVKNESNNIKNESRNDSQTFVENDSMTLSSITESDSKQQNMISCDKLSDCELEKESDIENFSQDSILSDNVSSSDIESDSSYKSCDYLKKENIQNLPQTSSEKQSETVDRNICEIESSEMISKLPNTKNICMGVKMKQIYRSCSKFTESEFQIENDHVKEKLSPVLRNEKKTVGQRHKSLIQSDSLGKALDRNNFEFNQSDFNMEKDNIKENFSPVLRKETKNIGQRHRSLIQQDSSMKPLDVMSPISSSSMPVEFPVKRKHSRKALSAVSELNNNNNHRSRSPYVKKLIKLYENKKQ 747
BLAST of Rho GTPase-activating protein 20 vs. Planmine SMEST
Match: SMESG000074055.1 (SMESG000074055.1) HSP 1 Score: 1378.62 bits (3567), Expect = 0.000e+0 Identity = 728/734 (99.18%), Postives = 732/734 (99.73%), Query Frame = 1 Query: 175 MDRDFKYDARQLIKVFDKESKSYIFNVSDIKIKLSKDRVXXXXXXXXXXXXXXDLCMKHALISRATDVATPKIDSCRLISDPSGYEVLLNFKSPSIASEYESKFSESMRMYNTKFANICFDVNVTNLVNDKLKESANVSLSGLTLGKDLKSWIEQEFIFPDIHMPCYILQLHVGEELLTIRDDATILQVHEHAAYSHAKGHCFIGCFYESVKPNSTLLIEINFYNHTIEYENGQIPYSIEEKWGVGEMPKWLTRLLSDIYSDGPDSKGVFRLNAKDSSFSKWYKHMLDCNDFIISEDIFNKAAIFKFFLRNIEGSLMTKNTRKQLNGLCKKFMEISFEEFFKNSKKQSKFIKLFQSLPKTHYFLFQNILVVLNAIIDSPNAKVEPFAIARAIAPSIFPLVRLSYWGNISNLLEAAIYLTDKIVKPADRKRIIDSYIKVKNESNNIKNESRNDSQTFVENDSMTLSSITESDSKQQNLISCDKLSDCELEKESDIENFSQDSILXXXXXXXXXXXXXXXXXCDYLKKENIQNLPQTSSEKQSETVDRNICEIESSEMISKLPNTKNICMGVKMKQIYRSCSKFTESEFQIESDHVKEKLSPVLRNEKKTVGQRHKSLIQSDSLGKALDRNNFEFNQSDFNMEKDNIKENFSPVLRKETKNIGQRHRSLIQQDSSMKPLDXXXXXXXXXXXXEFPVKRKHSRKALSAVSELNNNNNHRSRSPYVKKLIKLYENKKQ 2376 MDRDFKYDARQLIKVFDKESKSYIFNVSDIKIKLSKDRVKLYLIKKIEEKLILDLCMKHALISRATDVA PKIDSCRLISDPSGYEVLLNFKSPSIASEYESKFSESMRMYNTKFANICFDVNVTNLVNDKLKESANVSLSGLTLGKDLKSWIEQEFIFPDIHMPCYILQLHVGEELLTIRDDATILQVHEHAAYSHAKGHCFIGCFYESVKPNSTLLIEINFYNHTIEYENGQIPYSIEEKWGVGEMPKWLTRLLSDIY DGPDSKGVFRLNAKDSSFSKWYKHMLDC+DFIISEDIFNKAAIFKFFLRNIEGSLMTKNTRKQLNGLCKKFMEISFEEFFKNSKKQSKFIKLFQSLPKTHYFLFQNILVVLNAIIDSPNAKVEPFAIARAIAPSIFPLVRLSYWGNISNLLEAAIYLTDKIVKPAD+KRIIDSYIKVKNESNNIKNESRNDSQTFVENDSMTLSSITESDSKQQN+ISCDKLSDCELEKESDIENFSQDSILSDNVSSSDIESDSSYKSCDYLKKENIQNLPQTSSEKQSETVDRNICEIESSEMISKLPNTKNICMGVKMKQIYRSCSKFTESEFQIE+DHVKEKLSPVLRNEKKTVGQRHKSLIQSDSLGKALDRNNFEFNQSDFNMEKDNIKENFSPVLRKETKNIGQRHRSLIQQDSSMKPLDVMSPISSSSMPVEFPVKRKHSRKALSAVSELNNNNNHRSRSPYVKKLIKLYENKKQ Sbjct: 1 MDRDFKYDARQLIKVFDKESKSYIFNVSDIKIKLSKDRVKLYLIKKIEEKLILDLCMKHALISRATDVAIPKIDSCRLISDPSGYEVLLNFKSPSIASEYESKFSESMRMYNTKFANICFDVNVTNLVNDKLKESANVSLSGLTLGKDLKSWIEQEFIFPDIHMPCYILQLHVGEELLTIRDDATILQVHEHAAYSHAKGHCFIGCFYESVKPNSTLLIEINFYNHTIEYENGQIPYSIEEKWGVGEMPKWLTRLLSDIYCDGPDSKGVFRLNAKDSSFSKWYKHMLDCDDFIISEDIFNKAAIFKFFLRNIEGSLMTKNTRKQLNGLCKKFMEISFEEFFKNSKKQSKFIKLFQSLPKTHYFLFQNILVVLNAIIDSPNAKVEPFAIARAIAPSIFPLVRLSYWGNISNLLEAAIYLTDKIVKPADKKRIIDSYIKVKNESNNIKNESRNDSQTFVENDSMTLSSITESDSKQQNMISCDKLSDCELEKESDIENFSQDSILSDNVSSSDIESDSSYKSCDYLKKENIQNLPQTSSEKQSETVDRNICEIESSEMISKLPNTKNICMGVKMKQIYRSCSKFTESEFQIENDHVKEKLSPVLRNEKKTVGQRHKSLIQSDSLGKALDRNNFEFNQSDFNMEKDNIKENFSPVLRKETKNIGQRHRSLIQQDSSMKPLDVMSPISSSSMPVEFPVKRKHSRKALSAVSELNNNNNHRSRSPYVKKLIKLYENKKQ 734
BLAST of Rho GTPase-activating protein 20 vs. Planmine SMEST
Match: SMESG000040021.1 (SMESG000040021.1) HSP 1 Score: 167.548 bits (423), Expect = 2.643e-44 Identity = 109/384 (28.39%), Postives = 196/384 (51.04%), Query Frame = 1 Query: 340 CMKHALISRATDVATP-KIDSCRLISDPSGYEVLLNFKSPSIASEYESKFSESMRMYNTKFANICFDVNVTNLVNDKLKESANVSLSGLTLGKDLKSWIEQEFIFPDIHMPCYILQLHVGEELLTIRDDATILQVHEHAAYSHAKGHCFIGCFYESVKPNSTLLIEINFYNH-TIEYENGQIPYSIEEKWGVGEMPKWLTRLLSDIYSDGPDSKGVFRLNAKDSSFSKWYKHMLDCNDFIISEDIFNKAAIFKFFLRNIEGSLMTKN-TRKQLNGLCKKFMEISFEEFFKNSKKQSKFIKLFQSLPKTHYFLFQNILVVLNAIIDSPNAKVEPFAIARAIAPSIFPLVRLSYWGNIS-NLLEAAIYLTDKIVKPADRKRIIDSY 1479 C+KH ++ +D + P + L+ DP + +++ +P++ + F + +N + + I F + + N + K S ++++G G DL++ I+ Y+L L+ G+ + +RDD ++L ++EH + K C GC+ ES P+ L + I N IE++ YS++EKW E+P+WL +LL+D+Y +GP+++G+FR +A W + F I++ KA+I K F+R I+ L +K K L+ F ++ EEF + K IK +LPK ++ QN+LVVL AII++ + I+ S F + + L E I LTD++V P+D+++II+++ Sbjct: 63 CLKHTYVTFVSDESIPISKNKSLLLGDPLRNDFIVDIGNPNLMLSCHTNFFKERERFNKELSRIKFPILIKNTIATFDKMSVRITVNGSISGTDLRNHIDANLNLN--KGTQYLLLLNTGKTFVPLRDDVSLLMLYEHFTFCEKKYICAQGCYIESKAPDKELEVYIKLDNRKLIEFKIND--YSLKEKWINDEIPRWLMKLLADLYFEGPETRGIFRESASVQRIRSWINQIDSKKYFTIADKPLVKASILKIFIRGIKQGLFSKGYIGKHLDIFY--FQRLTVEEFLSDENKTDDLIKDLMNLPKKNFCFLQNLLVVLGAIINNNTNNNTVYNISVLFNQSFFDNENELFKQEATLKLTETIIKLTDRLVGPSDKQKIIENF 440
BLAST of Rho GTPase-activating protein 20 vs. Planmine SMEST
Match: SMESG000074052.1 (SMESG000074052.1) HSP 1 Score: 147.132 bits (370), Expect = 4.916e-36 Identity = 114/445 (25.62%), Postives = 212/445 (47.64%), Query Frame = 1 Query: 340 CMKHALISRATDVATPKIDSCRLISDPSGYEVLLNFKSPSIASEYESKFSESMRMYNTKFANICFDVNVTNLVNDKLKESA------NVSLSGLTLGKDLKSWIEQEFIFPDIHMPCYILQLHVGEELLTIRDDATILQVHEHAAYSHAKGHCFIGCFYESVKPNSTLLIEINFY-----------NHTIEYENGQIP-------YSIEEKWGVGEMPKWLTRLLSDIYSDGPDSKGVFRLNAKDSSFSKWYKHMLDCNDFIISEDIFNKAAIFKFFLRNIEGSLMTKNTRKQLNGLCKKFMEISFEEFFKNSKKQSKFIKLFQSLPKTHYFLFQNILVVLNAIID-SPNAKVEPFAIARAIAPSIFPLVRLSYWGNISNLLEAAIYLTDKIVKPADRKRIIDSYIKVKNESNNIKNESRNDSQTFVENDSMT-LSSITESDSKQ 1596 +KH + + +D P IDSC I P G ++++ F+SP +E+ + ++ + Y N + + ND + S+ ++++SG T G LK F DI + + + + + DD +++ + EHA + + C C Y T ++I +Y N + +P Y++ +W EMP+WL LL+D++++G + +G+FR++ ++ + + +D I I NKA I K F+ IEGSL+T T++ L + I E+F Q+K +KL Q +P + LFQ+ILV+L+ II S ++ I+ + ++F + I+ L E ++LT K+V P I+ SY++ K+ +++N S+++ ++ +S + +S T SDS + Sbjct: 233 ALKHTYLDQCSDTQIPNIDSCLRIGGPFGNDMIIRFQSPLTRNEWFNYVNDEINSYQETIKNSTTTITI---FNDTVPSSSAPLVSRSITISGNTSGSSLKKMAMNTFEIKDIDVKDLSIVFLLKNKENVLHDDVSLMVLQEHAN-NVQENSCVKSCIYCD---KGTAAVKIIYYLRCNRPLNESMNKGLAQTKKPVPVKPKQNKYNMNVRWIDSEMPQWLMNLLADLFNEGVECEGIFRMSGSVFQSDEYVYQISETDDLKIDTTIHNKANILKKFISIIEGSLLTSITKEVFYNLSNEINSI--EDFLSQEDLQTKLLKLIQKIPANNLNLFQHILVILDTIIQKSQINQMNIQNISTCFSQNLFKHLSDDAMK-INKLFECILHLTSKLVNPVTYSNIVKSYVQRKSSVGSVENHSKSNGVGCIDQESNSPTTSRTVSDSNE 667 The following BLAST results are available for this feature:
BLAST of Rho GTPase-activating protein 20 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of Rho GTPase-activating protein 20 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 1
BLAST of Rho GTPase-activating protein 20 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of Rho GTPase-activating protein 20 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of Rho GTPase-activating protein 20 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 4
BLAST of Rho GTPase-activating protein 20 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of Rho GTPase-activating protein 20 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of Rho GTPase-activating protein 20 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Rho GTPase-activating protein 20 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 1
BLAST of Rho GTPase-activating protein 20 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of Rho GTPase-activating protein 20 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Rho GTPase-activating protein 20 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of Rho GTPase-activating protein 20 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of Rho GTPase-activating protein 20 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30031095 ID=SMED30031095|Name=Rho GTPase-activating protein 20|organism=Schmidtea mediterranea sexual|type=transcript|length=2407bpback to top protein sequence of SMED30031095-orf-1 >SMED30031095-orf-1 ID=SMED30031095-orf-1|Name=SMED30031095-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=750bp MRMNQSKLKINPFNKMDRDFKYDARQLIKVFDKESKSYIFNVSDIKIKLSback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
|