KH domain-containing protein

Overview
NameKH domain-containing protein
Smed IDSMED30031080
Length (bp)955
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of KH domain-containing protein (SMED30031080) t-SNE clustered cells

Violin plots show distribution of expression levels for KH domain-containing protein (SMED30031080) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of KH domain-containing protein (SMED30031080) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for KH domain-containing protein (SMED30031080) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30031080

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 21

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30031080h1SMcG0008424 SmedASXL_003356SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30031080h1SMcG0008424 SmedASXL_003356SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
Smed sexual biotypeSMED30031080h1SMcG0008424 Contig25101newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
nervous systemSMED30031080h1SMcG0008424 dd_Smed_v4_1578_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30031080h1SMcG0008424 dd_Smed_v4_1578_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30031080h1SMcG0008424 dd_Smed_v4_1578_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30031080h1SMcG0008424 dd_Smed_v4_1578_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30031080h1SMcG0008424 dd_Smed_v4_1578_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30031080h1SMcG0008424 dd_Smed_v4_1578_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30031080h1SMcG0008424 dd_Smed_v4_1578_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30031080h1SMcG0008424 Contig25597uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30031080h1SMcG0008424 Contig25597newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
parenchymaSMED30031080h1SMcG0008424 Contig22337newmark_estsPMID:27612384
Roberts-Galbraith et al., 2016		whole organism asexual adult colorimetric in situ hybridization evidence
parenchymaSMED30031080h1SMcG0008424 Contig22337uc_Smed_v2PMID:27612384
Roberts-Galbraith et al., 2016		whole organism asexual adult colorimetric in situ hybridization evidence
parenchymaSMED30031080h1SMcG0008424 Contig23029newmark_estsPMID:27612384
Roberts-Galbraith et al., 2016		whole organism asexual adult colorimetric in situ hybridization evidence
gutSMED30031080h1SMcG0008424 DN294844smed_ncbi_20240424PMID:16344473
Zayas et al., 2005		whole organism adult hermaphrodite colorimetric in situ hybridization evidence
central nervous systemSMED30031080h1SMcG0008424 DN294844smed_ncbi_20240424PMID:16344473
Zayas et al., 2005		whole organism adult hermaphrodite colorimetric in situ hybridization evidence
ovarySMED30031080h1SMcG0008424 DN294844smed_ncbi_20240424PMID:16344473
Zayas et al., 2005		whole organism adult hermaphrodite colorimetric in situ hybridization evidence
testisSMED30031080h1SMcG0008424 DN294844smed_ncbi_20240424PMID:16344473
Zayas et al., 2005		whole organism adult hermaphrodite colorimetric in situ hybridization evidence
gutSMED30031080h1SMcG0008424 SMED30031080smed_20140614PMID:26457503
Tu et al., 2015		whole organism asexual adult colorimetric in situ hybridization evidence
parenchymaSMED30031080h1SMcG0008424 SMED30031080smed_20140614PMID:26457503
Tu et al., 2015		whole organism asexual adult colorimetric in situ hybridization evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of KH domain-containing protein vs. Ensembl Human
Match: KHDRBS3 (KH RNA binding domain containing, signal transduction associated 3 [Source:HGNC Symbol;Acc:HGNC:18117])

HSP 1 Score: 119.783 bits (299), Expect = 1.304e-32
Identity = 62/128 (48.44%), Postives = 90/128 (70.31%), Query Frame = 3 
Query:  201 IDTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTPD-PSEIQQP-LPPLSW 578
            ID + NK +K+  K+  PV+Q+P  NF GK++GP G +LK LQE+T T+MS+LG GSMR++ KE EL ++G+ KY HLN+ +H+ ++  A P+EAY ++  AL EIKK L PD   EI+Q  L  L++
Sbjct:   19 IDVVINKNMKLGQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYNDEIRQAQLQELTY 146
[Close]
BLAST of KH domain-containing protein vs. Ensembl Human
Match: KHDRBS2 (KH RNA binding domain containing, signal transduction associated 2 [Source:HGNC Symbol;Acc:HGNC:18114])

HSP 1 Score: 122.865 bits (307), Expect = 8.130e-32
Identity = 56/113 (49.56%), Postives = 82/113 (72.57%), Query Frame = 3 
Query:  201 IDTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTPD 539
            +D +SNK +K+  ++  PV+QYP  NF GK++GP G +LK LQE+T  +MS+LG GSMR++ KE EL ++G+ KY HL++ +H+ ++  A P EAY ++S AL EIKK L PD
Sbjct:   50 LDVISNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPD 162
[Close]
BLAST of KH domain-containing protein vs. Ensembl Human
Match: KHDRBS3 (KH RNA binding domain containing, signal transduction associated 3 [Source:HGNC Symbol;Acc:HGNC:18117])

HSP 1 Score: 118.627 bits (296), Expect = 5.349e-31
Identity = 66/147 (44.90%), Postives = 96/147 (65.31%), Query Frame = 3 
Query:  201 IDTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTPD-PSEIQQP-LPPLSWNEISFQQSVVGRGRGMPNF 635
            ID + NK +K+  K+  PV+Q+P  NF GK++GP G +LK LQE+T T+MS+LG GSMR++ KE EL ++G+ KY HLN+ +H+ ++  A P+EAY ++  AL EIKK L PD   EI+Q  L  L++     + + V   RG P  
Sbjct:   18 IDVVINKNMKLGQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYNDEIRQAQLQELTYLNGGSENADVPVVRGKPTL 164
[Close]
BLAST of KH domain-containing protein vs. Ensembl Human
Match: KHDRBS3 (KH RNA binding domain containing, signal transduction associated 3 [Source:HGNC Symbol;Acc:HGNC:18117])

HSP 1 Score: 118.627 bits (296), Expect = 2.743e-30
Identity = 66/147 (44.90%), Postives = 96/147 (65.31%), Query Frame = 3 
Query:  201 IDTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTPD-PSEIQQP-LPPLSWNEISFQQSVVGRGRGMPNF 635
            ID + NK +K+  K+  PV+Q+P  NF GK++GP G +LK LQE+T T+MS+LG GSMR++ KE EL ++G+ KY HLN+ +H+ ++  A P+EAY ++  AL EIKK L PD   EI+Q  L  L++     + + V   RG P  
Sbjct:   46 IDVVINKNMKLGQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYNDEIRQAQLQELTYLNGGSENADVPVVRGKPTL 192
[Close]
BLAST of KH domain-containing protein vs. Ensembl Human
Match: KHDRBS1 (KH RNA binding domain containing, signal transduction associated 1 [Source:HGNC Symbol;Acc:HGNC:18116])

HSP 1 Score: 117.472 bits (293), Expect = 2.961e-29
Identity = 63/145 (43.45%), Postives = 93/145 (64.14%), Query Frame = 3 
Query:  201 IDTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTPDPSEIQQPLPPLSWNEISFQQSV--VGRGRGMP 629
            +D  S+K +K++ ++  PV+QYP  NF GKI+GP G T+K LQE+T  ++SVLG GSMR++ KE EL + GDPKY HLN  +H+ ++    P EAY  ++ A+ E+KK L PD   +   +    + E+S+   V    RGRG+P
Sbjct:  146 LDLFSHKNMKLKERVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVPD---MMDDICQEQFLELSYLNGVPEPSRGRGVP 287
[Close]
BLAST of KH domain-containing protein vs. Ensembl Celegans
Match: E02D9.1 (pep chromosome:WBcel235:I:6800386:6801970:1 gene:WBGene00017098.1 transcript:E02D9.1b.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:E02D9.1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.130e-17
Identity = 43/133 (32.33%), Postives = 76/133 (57.14%), Query Frame = 3 
Query:  141 NVHSQIRMEIRRLREGII-DTIDTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTP 536
            N    +  E  RL   I  + ++    K VK+  KI  P+ ++P  NF GK++GP G TL+ L +  +  + +LG GS ++R KE EL+ +GDP++ H +  +H++V+ +A    AY +++  + E+ + L P
Sbjct:   98 NARRLLNSEKERLENNIDPEWLEVDVAKPVKVCKKILVPIYRHPNFNFIGKVLGPKGATLQTLCKTHKCHIYILGRGSTKDREKEAELLASGDPQHAHFSGPLHVKVETVAPAYIAYGRVAAVIEELSRILQP 230
[Close]
BLAST of KH domain-containing protein vs. Ensembl Celegans
Match: E02D9.1 (pep chromosome:WBcel235:I:6800386:6803841:1 gene:WBGene00017098.1 transcript:E02D9.1c.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:E02D9.1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.273e-17
Identity = 38/106 (35.85%), Postives = 67/106 (63.21%), Query Frame = 3 
Query:  219 KKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTP 536
            K VK+  KI  P+ ++P  NF GK++GP G TL+ L +  +  + +LG GS ++R KE EL+ +GDP++ H +  +H++V+ +A    AY +++  + E+ + L P
Sbjct:  125 KPVKVCKKILVPIYRHPNFNFIGKVLGPKGATLQTLCKTHKCHIYILGRGSTKDREKEAELLASGDPQHAHFSGPLHVKVETVAPAYIAYGRVAAVIEELSRILQP 230
[Close]
BLAST of KH domain-containing protein vs. Ensembl Celegans
Match: asd-2 (RNA-binding protein asd-2 [Source:UniProtKB/Swiss-Prot;Acc:G5EFF1])

HSP 1 Score: 78.9518 bits (193), Expect = 1.884e-16
Identity = 37/101 (36.63%), Postives = 64/101 (63.37%), Query Frame = 3 
Query:  240 KIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTPDP 542
            K+  P +++P  NF G+I+GP G T K+L+++T  ++ V G GSMR++ KE   +  G P ++HL+E +H+ + C    + A  K+ +A+ E++K L P P
Sbjct:   91 KVFVPAKEHPDYNFVGRILGPRGMTAKQLEQETGCKIMVRGRGSMRDKKKEE--LNRGKPNWEHLSEELHVLIQCEDTENRAKVKLMRAVEEVRKLLVPAP 189
[Close]
BLAST of KH domain-containing protein vs. Ensembl Celegans
Match: asd-2 (RNA-binding protein asd-2 [Source:UniProtKB/Swiss-Prot;Acc:G5EFF1])

HSP 1 Score: 78.9518 bits (193), Expect = 2.657e-16
Identity = 37/101 (36.63%), Postives = 64/101 (63.37%), Query Frame = 3 
Query:  240 KIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTPDP 542
            K+  P +++P  NF G+I+GP G T K+L+++T  ++ V G GSMR++ KE   +  G P ++HL+E +H+ + C    + A  K+ +A+ E++K L P P
Sbjct:   91 KVFVPAKEHPDYNFVGRILGPRGMTAKQLEQETGCKIMVRGRGSMRDKKKEE--LNRGKPNWEHLSEELHVLIQCEDTENRAKVKLMRAVEEVRKLLVPAP 189
[Close]
BLAST of KH domain-containing protein vs. Ensembl Celegans
Match: asd-2 (RNA-binding protein asd-2 [Source:UniProtKB/Swiss-Prot;Acc:G5EFF1])

HSP 1 Score: 78.9518 bits (193), Expect = 4.203e-16
Identity = 37/101 (36.63%), Postives = 64/101 (63.37%), Query Frame = 3 
Query:  240 KIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTPDP 542
            K+  P +++P  NF G+I+GP G T K+L+++T  ++ V G GSMR++ KE   +  G P ++HL+E +H+ + C    + A  K+ +A+ E++K L P P
Sbjct:  163 KVFVPAKEHPDYNFVGRILGPRGMTAKQLEQETGCKIMVRGRGSMRDKKKEE--LNRGKPNWEHLSEELHVLIQCEDTENRAKVKLMRAVEEVRKLLVPAP 261
[Close]
BLAST of KH domain-containing protein vs. Ensembl Fly
Match: qkr58E-3 (gene:FBgn0022984 transcript:FBtr0339538)

HSP 1 Score: 114.775 bits (286), Expect = 2.494e-29
Identity = 53/112 (47.32%), Postives = 77/112 (68.75%), Query Frame = 3 
Query:  204 DTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTPD 539
            D    K +KI  K+  PV+QYP  NF GKI+GP G +L+ LQE+T+ ++++ G  S+R+RNKE +L  TGDP+Y HL + + L+V  +A P+E Y +I+ AL EI+K L PD
Sbjct:   71 DVYKQKPMKITQKVFVPVKQYPKFNFTGKILGPKGNSLRRLQEETQCKIAIKGRSSIRDRNKEEQLRSTGDPRYAHLQKDLFLEVSTVATPAECYARIAYALAEIRKYLIPD 182
[Close]
BLAST of KH domain-containing protein vs. Ensembl Fly
Match: qkr58E-3 (gene:FBgn0022984 transcript:FBtr0307214)

HSP 1 Score: 114.775 bits (286), Expect = 2.494e-29
Identity = 53/112 (47.32%), Postives = 77/112 (68.75%), Query Frame = 3 
Query:  204 DTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTPD 539
            D    K +KI  K+  PV+QYP  NF GKI+GP G +L+ LQE+T+ ++++ G  S+R+RNKE +L  TGDP+Y HL + + L+V  +A P+E Y +I+ AL EI+K L PD
Sbjct:   71 DVYKQKPMKITQKVFVPVKQYPKFNFTGKILGPKGNSLRRLQEETQCKIAIKGRSSIRDRNKEEQLRSTGDPRYAHLQKDLFLEVSTVATPAECYARIAYALAEIRKYLIPD 182
[Close]
BLAST of KH domain-containing protein vs. Ensembl Fly
Match: qkr58E-3 (gene:FBgn0022984 transcript:FBtr0290254)

HSP 1 Score: 114.775 bits (286), Expect = 2.494e-29
Identity = 53/112 (47.32%), Postives = 77/112 (68.75%), Query Frame = 3 
Query:  204 DTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTPD 539
            D    K +KI  K+  PV+QYP  NF GKI+GP G +L+ LQE+T+ ++++ G  S+R+RNKE +L  TGDP+Y HL + + L+V  +A P+E Y +I+ AL EI+K L PD
Sbjct:   71 DVYKQKPMKITQKVFVPVKQYPKFNFTGKILGPKGNSLRRLQEETQCKIAIKGRSSIRDRNKEEQLRSTGDPRYAHLQKDLFLEVSTVATPAECYARIAYALAEIRKYLIPD 182
[Close]
BLAST of KH domain-containing protein vs. Ensembl Fly
Match: qkr58E-1 (gene:FBgn0022986 transcript:FBtr0339537)

HSP 1 Score: 114.775 bits (286), Expect = 5.232e-29
Identity = 52/115 (45.22%), Postives = 81/115 (70.43%), Query Frame = 3 
Query:  204 DTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTPDPSE 548
            +  S K +++  K+ FP+++YP  NF GKI+GP G TL++LQE+T  +M V+G  SMR+  KE EL  +G+PKY HL+  +H+++  +A P+EAY +IS AL EI+K + PD ++
Sbjct:  104 NVYSEKPIRVAQKVLFPIKEYPKFNFVGKILGPKGNTLRQLQEETMCKMVVMGRNSMRDHGKEEELRSSGNPKYAHLSRDLHVEISTVAPPAEAYHRISYALGEIRKFMIPDAND 218
[Close]
BLAST of KH domain-containing protein vs. Ensembl Fly
Match: qkr58E-1 (gene:FBgn0022986 transcript:FBtr0346637)

HSP 1 Score: 114.775 bits (286), Expect = 6.948e-29
Identity = 52/115 (45.22%), Postives = 81/115 (70.43%), Query Frame = 3 
Query:  204 DTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTPDPSE 548
            +  S K +++  K+ FP+++YP  NF GKI+GP G TL++LQE+T  +M V+G  SMR+  KE EL  +G+PKY HL+  +H+++  +A P+EAY +IS AL EI+K + PD ++
Sbjct:  104 NVYSEKPIRVAQKVLFPIKEYPKFNFVGKILGPKGNTLRQLQEETMCKMVVMGRNSMRDHGKEEELRSSGNPKYAHLSRDLHVEISTVAPPAEAYHRISYALGEIRKFMIPDAND 218
[Close]
BLAST of KH domain-containing protein vs. Ensembl Zebrafish
Match: khdrbs2 (KH domain containing, RNA binding, signal transduction associated 2 [Source:NCBI gene;Acc:768147])

HSP 1 Score: 123.25 bits (308), Expect = 3.378e-32
Identity = 64/145 (44.14%), Postives = 97/145 (66.90%), Query Frame = 3 
Query:  201 IDTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTPDPSE--IQQPLPPLSW----NEISFQQSVVGRG 617
            +D +SNK +K+  ++  PV+QYP  NF GK++GP G ++K LQE+T  +MS+LG GSMR++ KE EL ++G+ KY HL+  +H+ ++  A P EAY ++S AL EIKK L PD ++   Q+ L  LS+    ++ S  +S  GRG
Sbjct:   50 LDIISNKNIKLSERVLIPVQQYPKFNFVGKLLGPRGNSMKRLQEETGAKMSILGKGSMRDKGKEEELRKSGEAKYAHLSNDLHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNGSDDPSRGRSARGRG 194
[Close]
BLAST of KH domain-containing protein vs. Ensembl Zebrafish
Match: khdrbs1b (KH domain containing, RNA binding, signal transduction associated 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2344])

HSP 1 Score: 115.546 bits (288), Expect = 3.438e-29
Identity = 58/133 (43.61%), Postives = 88/133 (66.17%), Query Frame = 3 
Query:  156 IRMEIRRLREGIIDT-----IDTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTPD 539
            I  EI ++ +G  +      +D  + K +K++ +I  PV+QYP  NF GKI+GP G T+K LQE+T  ++SVLG GSMR++NKE EL + G+PKY HL+  +H+ ++  A   +AY +++ A+ EIKK L PD
Sbjct:   29 ISAEIEKIEKGDTEKDTESYLDLFTMKNIKLKERILIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKNKEEELRKNGEPKYAHLSMELHVFIEVFAPVPDAYMRMAHAMEEIKKFLFPD 161
[Close]
BLAST of KH domain-containing protein vs. Ensembl Zebrafish
Match: khdrbs1a (KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25])

HSP 1 Score: 112.849 bits (281), Expect = 5.456e-28
Identity = 55/132 (41.67%), Postives = 85/132 (64.39%), Query Frame = 3 
Query:  156 IRMEIRRLREGIIDT-----IDTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTP 536
            +  EI R+++G         +D  ++K V+++ ++  PV+QYP  NF GKI+GP G T+K LQE T  ++SVLG GSMR++NKE EL + GDPKY HL   +H+ ++  A   + Y +++ A+ E+KK L P
Sbjct:   39 LSAEIERVQKGEPKKDSELYLDLFASKSVRVKERVLIPVKQYPRFNFVGKILGPQGSTIKRLQEDTGAKISVLGKGSMRDKNKEEELRKGGDPKYAHLGMELHVHIEVFAPIPDCYLRMAHAMDEVKKFLMP 170
[Close]
BLAST of KH domain-containing protein vs. Ensembl Zebrafish
Match: khdrbs1a (KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25])

HSP 1 Score: 111.694 bits (278), Expect = 9.311e-28
Identity = 55/132 (41.67%), Postives = 85/132 (64.39%), Query Frame = 3 
Query:  156 IRMEIRRLREGIIDT-----IDTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTP 536
            +  EI R+++G         +D  ++K V+++ ++  PV+QYP  NF GKI+GP G T+K LQE T  ++SVLG GSMR++NKE EL + GDPKY HL   +H+ ++  A   + Y +++ A+ E+KK L P
Sbjct:   39 LSAEIERVQKGEPKKDSELYLDLFASKSVRVKERVLIPVKQYPRFNFVGKILGPQGSTIKRLQEDTGAKISVLGKGSMRDKNKEEELRKGGDPKYAHLGMELHVHIEVFAPIPDCYLRMAHAMDEVKKFLMP 170
[Close]
BLAST of KH domain-containing protein vs. Ensembl Zebrafish
Match: khdrbs1a (KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25])

HSP 1 Score: 111.694 bits (278), Expect = 9.952e-28
Identity = 55/132 (41.67%), Postives = 85/132 (64.39%), Query Frame = 3 
Query:  156 IRMEIRRLREGIIDT-----IDTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTP 536
            +  EI R+++G         +D  ++K V+++ ++  PV+QYP  NF GKI+GP G T+K LQE T  ++SVLG GSMR++NKE EL + GDPKY HL   +H+ ++  A   + Y +++ A+ E+KK L P
Sbjct:   39 LSAEIERVQKGEPKKDSELYLDLFASKSVRVKERVLIPVKQYPRFNFVGKILGPQGSTIKRLQEDTGAKISVLGKGSMRDKNKEEELRKGGDPKYAHLGMELHVHIEVFAPIPDCYLRMAHAMDEVKKFLMP 170
[Close]
BLAST of KH domain-containing protein vs. Ensembl Xenopus
Match: KHDRBS3 (KH domain containing, RNA binding, signal transduction associated 3 [Source:NCBI gene;Acc:100379996])

HSP 1 Score: 125.176 bits (313), Expect = 8.814e-33
Identity = 71/164 (43.29%), Postives = 105/164 (64.02%), Query Frame = 3 
Query:   90 IEAYEQELLTIDAVACPNVHSQIRM---EIRRLREGIIDT----IDTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTPD-PSEIQQ 557
            +E Y  +LL       P+    +RM   EI +L++G  +T    ID + NK +K+  K+  P++Q+P  NF GK++GP G +LK LQE T T+MS+LG GSMR++ KE EL ++G+ KY HLN+ +H+ ++  A P+EAY ++  AL EIKK L PD   EI+Q
Sbjct:    1 MEKYLPQLLAEKDALDPSFTHALRMVKEEIEKLQKGEDNTEDQYIDVVINKNMKLAQKVLIPIKQFPKFNFVGKLLGPRGNSLKRLQEDTLTKMSILGKGSMRDKAKEEELRKSGEAKYYHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYNDEIRQ 164
[Close]
BLAST of KH domain-containing protein vs. Ensembl Xenopus
Match: pdc (phosducin [Source:Xenbase;Acc:XB-GENE-983832])

HSP 1 Score: 117.087 bits (292), Expect = 1.496e-29
Identity = 62/137 (45.26%), Postives = 90/137 (65.69%), Query Frame = 3 
Query:  150 SQIRMEIRRLREGII------DT-IDTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTPD 539
            S +  EI RL++G        DT +D  S+K +K++ +I  PV+ YP  NF GKI+GP G T+K LQE+T  ++SVLG GSMR++ KE EL + GDPKY HLN  +H+ ++    P E+Y +++ A+ E+KK L PD
Sbjct:   53 SLLGKEIERLKKGGDAKKDEEDTYLDLFSHKNMKLKERILIPVKLYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYSHLNMDLHVFIEVFGPPCESYTRMAHAMEEVKKFLVPD 189
[Close]
BLAST of KH domain-containing protein vs. Ensembl Xenopus
Match: khdrbs2 (KH domain containing, RNA binding, signal transduction associated 2 [Source:NCBI gene;Acc:779662])

HSP 1 Score: 116.316 bits (290), Expect = 2.108e-29
Identity = 62/150 (41.33%), Postives = 98/150 (65.33%), Query Frame = 3 
Query:  201 IDTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTPDPSE--IQQPLPPLSW----NEISFQQSVVGRGRGMPN 632
            +D +SNK +K+  ++  PV+QYP  NF GK++GP G +LK LQE+T  +MS+LG GSMR++ KE EL ++ + K+ HL++ +H+ ++  A P EAY ++S AL EIKK L PD ++   Q+ L  LS+    ++    +   GRG  +P+
Sbjct:   50 LDIISNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKIKEEELRKSDEAKHAHLSDELHVLLEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNGSDDSDRGKGTRGRGIRVPS 199
[Close]
BLAST of KH domain-containing protein vs. Ensembl Xenopus
Match: pdc (phosducin [Source:Xenbase;Acc:XB-GENE-983832])

HSP 1 Score: 115.161 bits (287), Expect = 5.273e-29
Identity = 61/136 (44.85%), Postives = 89/136 (65.44%), Query Frame = 3 
Query:  150 SQIRMEIRRLREGII------DT-IDTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTP 536
            S +  EI RL++G        DT +D  S+K +K++ +I  PV+ YP  NF GKI+GP G T+K LQE+T  ++SVLG GSMR++ KE EL + GDPKY HLN  +H+ ++    P E+Y +++ A+ E+KK L P
Sbjct:   27 SLLGKEIERLKKGGDAKKDEEDTYLDLFSHKNMKLKERILIPVKLYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYSHLNMDLHVFIEVFGPPCESYTRMAHAMEEVKKFLVP 162
[Close]
BLAST of KH domain-containing protein vs. Ensembl Xenopus
Match: spsb3 (splA/ryanodine receptor domain and SOCS box containing 3 [Source:Xenbase;Acc:XB-GENE-971062])

HSP 1 Score: 80.8777 bits (198), Expect = 7.662e-17
Identity = 48/137 (35.04%), Postives = 81/137 (59.12%), Query Frame = 3 
Query:  165 EIRRLREGII-DTIDTLSNKK------------VKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTP 536
            EI R+R+ +  DT++  +N+K            V+++ K+  PV++YP  NF G+I+GP G T K+L+ +T  ++ V G GSMR++ KE +    G P ++HLNE +H+ +      + A  K+ +A+ E+KK L P
Sbjct:   48 EISRVRKDMYNDTLNGSNNEKRTSELPDGIGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQ--NRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVP 182
[Close]
BLAST of KH domain-containing protein vs. Ensembl Mouse
Match: Khdrbs2 (KH domain containing, RNA binding, signal transduction associated 2 [Source:MGI Symbol;Acc:MGI:2159649])

HSP 1 Score: 123.25 bits (308), Expect = 4.225e-32
Identity = 56/113 (49.56%), Postives = 82/113 (72.57%), Query Frame = 3 
Query:  201 IDTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTPD 539
            +D +SNK +K+  ++  PV+QYP  NF GK++GP G +LK LQE+T  +MS+LG GSMR++ KE EL ++G+ KY HL++ +H+ ++  A P EAY ++S AL EIKK L PD
Sbjct:   50 LDVISNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKTKEEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPD 162
[Close]
BLAST of KH domain-containing protein vs. Ensembl Mouse
Match: Khdrbs3 (KH domain containing, RNA binding, signal transduction associated 3 [Source:MGI Symbol;Acc:MGI:1313312])

HSP 1 Score: 119.013 bits (297), Expect = 1.471e-30
Identity = 60/120 (50.00%), Postives = 86/120 (71.67%), Query Frame = 3 
Query:  201 IDTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTPD-PSEIQQ 557
            ID + NK +K+  K+  PV+Q+P  NF GK++GP G +LK LQE+T T+MS+LG GSMR++ KE EL ++G+ KY HLN+ +H+ ++  A P+EAY ++  AL EIKK L PD   EI+Q
Sbjct:   46 IDVVINKNMKLGQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYNDEIRQ 165
[Close]
BLAST of KH domain-containing protein vs. Ensembl Mouse
Match: Khdrbs3 (KH domain containing, RNA binding, signal transduction associated 3 [Source:MGI Symbol;Acc:MGI:1313312])

HSP 1 Score: 119.013 bits (297), Expect = 1.471e-30
Identity = 60/120 (50.00%), Postives = 86/120 (71.67%), Query Frame = 3 
Query:  201 IDTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTPD-PSEIQQ 557
            ID + NK +K+  K+  PV+Q+P  NF GK++GP G +LK LQE+T T+MS+LG GSMR++ KE EL ++G+ KY HLN+ +H+ ++  A P+EAY ++  AL EIKK L PD   EI+Q
Sbjct:   46 IDVVINKNMKLGQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYNDEIRQ 165
[Close]
BLAST of KH domain-containing protein vs. Ensembl Mouse
Match: Khdrbs3 (KH domain containing, RNA binding, signal transduction associated 3 [Source:MGI Symbol;Acc:MGI:1313312])

HSP 1 Score: 119.013 bits (297), Expect = 1.471e-30
Identity = 60/120 (50.00%), Postives = 86/120 (71.67%), Query Frame = 3 
Query:  201 IDTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTPD-PSEIQQ 557
            ID + NK +K+  K+  PV+Q+P  NF GK++GP G +LK LQE+T T+MS+LG GSMR++ KE EL ++G+ KY HLN+ +H+ ++  A P+EAY ++  AL EIKK L PD   EI+Q
Sbjct:   46 IDVVINKNMKLGQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYNDEIRQ 165
[Close]
BLAST of KH domain-containing protein vs. Ensembl Mouse
Match: Khdrbs3 (KH domain containing, RNA binding, signal transduction associated 3 [Source:MGI Symbol;Acc:MGI:1313312])

HSP 1 Score: 112.464 bits (280), Expect = 2.134e-30
Identity = 56/112 (50.00%), Postives = 81/112 (72.32%), Query Frame = 3 
Query:  225 VKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTPD-PSEIQQ 557
            +K+  K+  PV+Q+P  NF GK++GP G +LK LQE+T T+MS+LG GSMR++ KE EL ++G+ KY HLN+ +H+ ++  A P+EAY ++  AL EIKK L PD   EI+Q
Sbjct:    1 MKLGQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYNDEIRQ 112
[Close]
BLAST of KH domain-containing protein vs. UniProt/SwissProt
Match: sp|P13230|GRP33_ARTSA (Glycine-rich protein GRP33 OS=Artemia salina OX=85549 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 9.769e-33
Identity = 67/163 (41.10%), Postives = 111/163 (68.10%), Query Frame = 3 
Query:   87 LIEAYE--QELLTIDAVACPNVHSQIRMEIRRLREG-----IIDT-----IDTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTPD 539
            L++ Y+  +++LT   V+   V   I  EI+ ++ G     + +T     +D  ++ KVK+ ++   PV+Q+P  NF GK++GPGG T+K+LQ++T T++S+LG GSMR+RNKE EL  +GD KY HLNE++H+++  +A P+EA+ +++ AL EIKK +TP+
Sbjct:   15 LVKDYDDARQMLTQAGVS-EAVLGTIDAEIKHIKTGSRPKTVPNTDGSGFMDLYNDTKVKLVSRCCLPVDQFPKYNFLGKLLGPGGSTMKQLQDETMTKISILGRGSMRDRNKEEELRNSGDVKYAHLNEQLHIEIISIASPAEAHARMAYALTEIKKYITPE 176
[Close]
BLAST of KH domain-containing protein vs. UniProt/SwissProt
Match: sp|Q08BJ2|KHDR2_DANRE (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Danio rerio OX=7955 GN=khdrbs2 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.550e-31
Identity = 64/145 (44.14%), Postives = 97/145 (66.90%), Query Frame = 3 
Query:  201 IDTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTPDPSE--IQQPLPPLSW----NEISFQQSVVGRG 617
            +D +SNK +K+  ++  PV+QYP  NF GK++GP G ++K LQE+T  +MS+LG GSMR++ KE EL ++G+ KY HL+  +H+ ++  A P EAY ++S AL EIKK L PD ++   Q+ L  LS+    ++ S  +S  GRG
Sbjct:   50 LDIISNKNIKLSERVLIPVQQYPKFNFVGKLLGPRGNSMKRLQEETGAKMSILGKGSMRDKGKEEELRKSGEAKYAHLSNDLHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNGSDDPSRGRSARGRG 194
[Close]
BLAST of KH domain-containing protein vs. UniProt/SwissProt
Match: sp|Q9WU01|KHDR2_MOUSE (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Mus musculus OX=10090 GN=Khdrbs2 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.955e-31
Identity = 56/113 (49.56%), Postives = 82/113 (72.57%), Query Frame = 3 
Query:  201 IDTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTPD 539
            +D +SNK +K+  ++  PV+QYP  NF GK++GP G +LK LQE+T  +MS+LG GSMR++ KE EL ++G+ KY HL++ +H+ ++  A P EAY ++S AL EIKK L PD
Sbjct:   50 LDVISNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKTKEEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPD 162
[Close]
BLAST of KH domain-containing protein vs. UniProt/SwissProt
Match: sp|Q5VWX1|KHDR2_HUMAN (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Homo sapiens OX=9606 GN=KHDRBS2 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 3.904e-31
Identity = 56/113 (49.56%), Postives = 82/113 (72.57%), Query Frame = 3 
Query:  201 IDTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTPD 539
            +D +SNK +K+  ++  PV+QYP  NF GK++GP G +LK LQE+T  +MS+LG GSMR++ KE EL ++G+ KY HL++ +H+ ++  A P EAY ++S AL EIKK L PD
Sbjct:   50 LDVISNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPD 162
[Close]
BLAST of KH domain-containing protein vs. UniProt/SwissProt
Match: sp|Q920F3|KHDR2_RAT (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Rattus norvegicus OX=10116 GN=Khdrbs2 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 4.196e-31
Identity = 59/120 (49.17%), Postives = 86/120 (71.67%), Query Frame = 3 
Query:  201 IDTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTPD-PSEIQQ 557
            +D +SNK +K+  ++  PV+QYP  NF GK++GP G +LK LQE+T  +MS+LG GSMR++ KE EL ++G+ KY HL++ +H+ ++  A P EAY ++S AL EIKK L PD   EI+Q
Sbjct:   50 LDVISNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQ 169
[Close]
BLAST of KH domain-containing protein vs. TrEMBL
Match: H9CXT9 (KHD-1 OS=Schmidtea mediterranea OX=79327 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 9.198e-56
Identity = 94/161 (58.39%), Postives = 122/161 (75.78%), Query Frame = 3 
Query:   66 RQNPYQALIEAYEQELLTIDAVACPNVHSQIRMEIRRLREGIIDTIDTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTPDPSE 548
            R+N +Q LI+AYE EL  +D   CPN+   +R E+ RLR G+IDT+D L+ KK K+RTK+D PVE YP VNF GK++GP GKTLK +QEQT T+MS+LG+GS+RN  KE EL+ +GDPKY HL +R+HLQ+D +  PSEAY  IS AL E+KK + PDP+E
Sbjct:   35 RENQFQGLIDAYENELHGVDEATCPNIAMLVRNELFRLRGGVIDTVDVLTTKKTKVRTKVDIPVEAYPNVNFVGKLLGPAGKTLKTVQEQTNTKMSILGSGSLRNPEKEQELLNSGDPKYNHLRDRLHLQIDSIGNPSEAYYNISYALAEVKKVMIPDPNE 195
[Close]
BLAST of KH domain-containing protein vs. TrEMBL
Match: A0A5J4NM05 (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Paragonimus westermani OX=34504 GN=DEA37_0008186 PE=4 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 7.916e-52
Identity = 85/165 (51.52%), Postives = 120/165 (72.73%), Query Frame = 3 
Query:   84 ALIEAYEQELLTIDAVACPNVHSQIRMEIRRLREGIIDTIDTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTPDPSEIQQPLPPLSW 578
            A +EA  +EL  +D  A P +H+    E+ RLR GI D+ID +SN++VKIR KI+ P  QYPG NF GK++GPGG+TL+  QE T+T+M++LGAGS+R+ +KE EL+ +GDPKYQHL +++HLQVD LA PSEAY ++S A+ E++K + P+ +E     PP  W
Sbjct:   12 ATVEALVRELKNLDEAAFPALHALAENELFRLRGGIADSIDIVSNRQVKIRAKIEIPTTQYPGFNFVGKLLGPGGQTLRATQESTKTKMAILGAGSLRDDSKERELLSSGDPKYQHLKQKLHLQVDSLAPPSEAYYRLSHAIAELRKIMLPESTE----FPPPPW 172
[Close]
BLAST of KH domain-containing protein vs. TrEMBL
Match: A0A4S2M594 (KH domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_002587 PE=4 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.549e-51
Identity = 90/175 (51.43%), Postives = 124/175 (70.86%), Query Frame = 3 
Query:   57 KKARQNPYQA-LIEAYEQELLTIDAVACPNVHSQIRMEIRRLREGIIDTIDTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTPDPSEIQQPLPPLSW 578
            K     P QA  IEA  +EL  +D  A P +H+    E+ RLR GI ++ID +SN++VKIR KI+ P  QYPGVNF GK++GPGG+TL+  QE T+T+M++LGAGS+R+ +KE EL+ +GDPKYQHL +++HLQVD LA PSEAY ++S AL E++K + P+ +E     PP  W
Sbjct:    3 KVGEPRPEQAGAIEAIVRELKNLDEKAFPALHALAENELFRLRGGIAESIDIVSNRQVKIRAKIEIPSSQYPGVNFVGKLLGPGGQTLRATQESTKTKMAILGAGSLRDDSKERELLSSGDPKYQHLKQKLHLQVDSLAPPSEAYYRLSHALAELRKVMLPESNEC----PPPPW 173
[Close]
BLAST of KH domain-containing protein vs. TrEMBL
Match: A0A4S2M597 (KH domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_002587 PE=4 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 1.598e-51
Identity = 89/169 (52.66%), Postives = 123/169 (72.78%), Query Frame = 3 
Query:   75 PYQA-LIEAYEQELLTIDAVACPNVHSQIRMEIRRLREGIIDTIDTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTPDPSEIQQPLPPLSW 578
            P QA  IEA  +EL  +D  A P +H+    E+ RLR GI ++ID +SN++VKIR KI+ P  QYPGVNF GK++GPGG+TL+  QE T+T+M++LGAGS+R+ +KE EL+ +GDPKYQHL +++HLQVD LA PSEAY ++S AL E++K + P+ +E     PP  W
Sbjct:    9 PEQAGAIEAIVRELKNLDEKAFPALHALAENELFRLRGGIAESIDIVSNRQVKIRAKIEIPSSQYPGVNFVGKLLGPGGQTLRATQESTKTKMAILGAGSLRDDSKERELLSSGDPKYQHLKQKLHLQVDSLAPPSEAYYRLSHALAELRKVMLPESNEC----PPPPW 173
[Close]
BLAST of KH domain-containing protein vs. TrEMBL
Match: A0A4V3SG99 (KH domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_002587 PE=4 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 2.307e-51
Identity = 90/175 (51.43%), Postives = 124/175 (70.86%), Query Frame = 3 
Query:   57 KKARQNPYQA-LIEAYEQELLTIDAVACPNVHSQIRMEIRRLREGIIDTIDTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTPDPSEIQQPLPPLSW 578
            K     P QA  IEA  +EL  +D  A P +H+    E+ RLR GI ++ID +SN++VKIR KI+ P  QYPGVNF GK++GPGG+TL+  QE T+T+M++LGAGS+R+ +KE EL+ +GDPKYQHL +++HLQVD LA PSEAY ++S AL E++K + P+ +E     PP  W
Sbjct:    3 KVGEPRPEQAGAIEAIVRELKNLDEKAFPALHALAENELFRLRGGIAESIDIVSNRQVKIRAKIEIPSSQYPGVNFVGKLLGPGGQTLRATQESTKTKMAILGAGSLRDDSKERELLSSGDPKYQHLKQKLHLQVDSLAPPSEAYYRLSHALAELRKVMLPESNEC----PPPPW 173
[Close]
BLAST of KH domain-containing protein vs. Ensembl Cavefish
Match: khdrbs2 (KH domain containing, RNA binding, signal transduction associated 2 [Source:NCBI gene;Acc:768147])

HSP 1 Score: 126.716 bits (317), Expect = 1.906e-33
Identity = 67/145 (46.21%), Postives = 98/145 (67.59%), Query Frame = 3 
Query:  201 IDTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTPD-PSEI-QQPLPPLSW----NEISFQQSVVGRG 617
            +D +SNK +K+  ++  PV+QYP  NF GK++GP G ++K LQE+T  +MS+LG GSMR++ KE EL ++G+ KY HL+  +H+ ++  A P EAY ++S AL EIKK L PD   EI Q+ L  LS+    ++ S  +SV GRG
Sbjct:   50 LDVISNKNIKLSERVLIPVQQYPKFNFVGKLLGPRGNSMKRLQEETGAKMSILGKGSMRDKGKEEELRKSGEAKYAHLSNDLHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNGSDDPSRARSVRGRG 194
[Close]
BLAST of KH domain-containing protein vs. Ensembl Cavefish
Match: khdrbs2 (KH domain containing, RNA binding, signal transduction associated 2 [Source:NCBI gene;Acc:768147])

HSP 1 Score: 126.331 bits (316), Expect = 3.925e-33
Identity = 67/145 (46.21%), Postives = 98/145 (67.59%), Query Frame = 3 
Query:  201 IDTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTPD-PSEI-QQPLPPLSW----NEISFQQSVVGRG 617
            +D +SNK +K+  ++  PV+QYP  NF GK++GP G ++K LQE+T  +MS+LG GSMR++ KE EL ++G+ KY HL+  +H+ ++  A P EAY ++S AL EIKK L PD   EI Q+ L  LS+    ++ S  +SV GRG
Sbjct:   50 LDVISNKNIKLSERVLIPVQQYPKFNFVGKLLGPRGNSMKRLQEETGAKMSILGKGSMRDKGKEEELRKSGEAKYAHLSNDLHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNGSDDPSRARSVRGRG 194
[Close]
BLAST of KH domain-containing protein vs. Ensembl Cavefish
Match: khdrbs2 (KH domain containing, RNA binding, signal transduction associated 2 [Source:NCBI gene;Acc:768147])

HSP 1 Score: 126.331 bits (316), Expect = 4.083e-33
Identity = 65/145 (44.83%), Postives = 98/145 (67.59%), Query Frame = 3 
Query:  201 IDTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTPDPSE--IQQPLPPLSW----NEISFQQSVVGRG 617
            +D +SNK +K+  ++  PV+QYP  NF GK++GP G ++K LQE+T  +MS+LG GSMR++ KE EL ++G+ KY HL+  +H+ ++  A P EAY ++S AL EIKK L PD ++   Q+ L  LS+    ++ S  +SV GRG
Sbjct:   50 LDVISNKNIKLSERVLIPVQQYPKFNFVGKLLGPRGNSMKRLQEETGAKMSILGKGSMRDKGKEEELRKSGEAKYAHLSNDLHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNGSDDPSRARSVRGRG 194
[Close]
BLAST of KH domain-containing protein vs. Ensembl Cavefish
Match: khdrbs2 (KH domain containing, RNA binding, signal transduction associated 2 [Source:NCBI gene;Acc:768147])

HSP 1 Score: 126.716 bits (317), Expect = 9.242e-33
Identity = 67/145 (46.21%), Postives = 98/145 (67.59%), Query Frame = 3 
Query:  201 IDTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTPD-PSEI-QQPLPPLSW----NEISFQQSVVGRG 617
            +D +SNK +K+  ++  PV+QYP  NF GK++GP G ++K LQE+T  +MS+LG GSMR++ KE EL ++G+ KY HL+  +H+ ++  A P EAY ++S AL EIKK L PD   EI Q+ L  LS+    ++ S  +SV GRG
Sbjct:   50 LDVISNKNIKLSERVLIPVQQYPKFNFVGKLLGPRGNSMKRLQEETGAKMSILGKGSMRDKGKEEELRKSGEAKYAHLSNDLHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNGSDDPSRARSVRGRG 194
[Close]
BLAST of KH domain-containing protein vs. Ensembl Cavefish
Match: khdrbs2 (KH domain containing, RNA binding, signal transduction associated 2 [Source:NCBI gene;Acc:768147])

HSP 1 Score: 125.946 bits (315), Expect = 1.718e-32
Identity = 67/145 (46.21%), Postives = 98/145 (67.59%), Query Frame = 3 
Query:  201 IDTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTPD-PSEI-QQPLPPLSW----NEISFQQSVVGRG 617
            +D +SNK +K+  ++  PV+QYP  NF GK++GP G ++K LQE+T  +MS+LG GSMR++ KE EL ++G+ KY HL+  +H+ ++  A P EAY ++S AL EIKK L PD   EI Q+ L  LS+    ++ S  +SV GRG
Sbjct:   50 LDVISNKNIKLSERVLIPVQQYPKFNFVGKLLGPRGNSMKRLQEETGAKMSILGKGSMRDKGKEEELRKSGEAKYAHLSNDLHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNGSDDPSRARSVRGRG 194
[Close]
BLAST of KH domain-containing protein vs. Ensembl Sea Lamprey
Match: KHDRBS3 (KH RNA binding domain containing, signal transduction associated 3 [Source:HGNC Symbol;Acc:HGNC:18117])

HSP 1 Score: 122.479 bits (306), Expect = 1.950e-33
Identity = 62/128 (48.44%), Postives = 91/128 (71.09%), Query Frame = 3 
Query:  201 IDTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTPD-PSEI-QQPLPPLSW 578
            ID +SN+ VK+  ++  PV Q+P  NF GK++GP G +LK L+E+T T++S+LG GSMR+R+KE +L ++G+ KY HLNE +H+ ++  A PS+AY ++  AL E+KK L PD   EI QQ L  LS+
Sbjct:   27 IDVVSNRNVKLIERVIIPVRQHPKFNFIGKLLGPRGNSLKRLKEETGTKLSILGKGSMRDRDKEEDLRKSGEAKYAHLNEDLHVLIEVFAPPSQAYRRMGHALDEVKKYLVPDYNDEIRQQQLRELSF 154
[Close]
BLAST of KH domain-containing protein vs. Ensembl Sea Lamprey
Match: khdrbs2 (KH domain containing, RNA binding, signal transduction associated 2 [Source:NCBI gene;Acc:768147])

HSP 1 Score: 115.546 bits (288), Expect = 3.656e-30
Identity = 55/120 (45.83%), Postives = 85/120 (70.83%), Query Frame = 3 
Query:  201 IDTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTPD-PSEIQQ 557
            +D +SNK +K+  ++  P +Q+P  NF GK++GP G +LK +QE+T T+MS+LG GSMR++  E E+ ++G+ KY HL+E +H+ ++  A PSEAY ++  AL E+KK L PD   EI+Q
Sbjct:   27 LDLVSNKNMKLAERVIIPAKQHPKFNFVGKLLGPRGNSLKRMQEETGTKMSILGKGSMRDKALEEEMRKSGENKYAHLSEELHVLIEVFAPPSEAYSRMGHALDEVKKYLVPDYNDEIRQ 146
[Close]
BLAST of KH domain-containing protein vs. Ensembl Sea Lamprey
Match: khdrbs1a (KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25])

HSP 1 Score: 104.76 bits (260), Expect = 6.604e-26
Identity = 56/143 (39.16%), Postives = 87/143 (60.84%), Query Frame = 3 
Query:  204 DTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTPDPSE--IQQPLPPLSWNEISFQQSVVGRGRGM 626
            + +  +  K+  K+  P +Q+P  NF GK++GP G TLK LQ +T TRM+++G G M++R KE EL  +G+ KY HLNE +H+ ++  A   EAY ++  AL E+KK   PD ++   Q+ L  +++     +  VV RGR M
Sbjct:   52 NIIGEQNFKLAEKVLIPAKQHPKFNFVGKLLGPQGNTLKRLQVETGTRMAIMGKGCMKDRAKEEELRNSGEAKYVHLNEELHVLIEVYAPLPEAYSRMGHALEEVKKFFNPDYNDEICQEQLMEMTYLN-GVEVPVVARGRAM 193
[Close]
BLAST of KH domain-containing protein vs. Ensembl Yeast
Match: MSL5 (Component of commitment complex; which defines first step in splicing pathway; essential protein that interacts with Mud2p and Prp40p, forming a bridge between the intron ends; also involved in nuclear retention of pre-mRNA; relocalizes to the cytosol in response to hypoxia [Source:SGD;Acc:S000004106])

HSP 1 Score: 55.0694 bits (131), Expect = 5.775e-9
Identity = 34/112 (30.36%), Postives = 61/112 (54.46%), Query Frame = 3 
Query:  219 KKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKAL-----IEIKKALTPD 539
            +  K + K   PV+QYP VNF G ++GP G+TL++LQE +  ++++ G GS++      +L     P   +  + +H    CL + +++ +KI K +     I IK   +P+
Sbjct:  144 RPTKFQDKYYIPVDQYPDVNFVGLLLGPRGRTLRKLQEDSNCKIAIRGRGSVKEGKNASDL----PPGAMNFEDPLH----CLII-ADSEDKIQKGIKVCQNIVIKAVTSPE 246
[Close]
BLAST of KH domain-containing protein vs. Ensembl Nematostella
Match: EDO44127 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RWI4])

HSP 1 Score: 103.605 bits (257), Expect = 6.711e-27
Identity = 51/107 (47.66%), Postives = 71/107 (66.36%), Query Frame = 3 
Query:  219 KKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTPD 539
            K VK+  K+  PV+ +P  NF GK++GP G T K LQ  T T+MS+LG GSMR++ KE EL  T DPKY HL E +H+ ++  A P +A+ ++  A+ EIKK L P+
Sbjct:   45 KPVKLSEKVFIPVKDHPKFNFVGKLLGPRGNTFKRLQNSTGTKMSILGKGSMRDKEKEEELRATEDPKYAHLGEELHVLIEVEAPPGQAHARLGIAIEEIKKYLIPE 151
[Close]
BLAST of KH domain-containing protein vs. Ensembl Nematostella
Match: EDO30297 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T170])

HSP 1 Score: 77.0258 bits (188), Expect = 5.835e-17
Identity = 37/108 (34.26%), Postives = 65/108 (60.19%), Query Frame = 3 
Query:  213 SNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTP 536
            S  +VK+  K+  PV+++P  NF G++IGP G TL+E++  T  ++ V G GSM+++  E E  + G P Y+HL+E +H+ + C       + ++ KA+  ++  L P
Sbjct:   47 SGPRVKLVEKVYAPVKEFPKFNFVGRVIGPRGMTLREIESTTGCKLLVRGKGSMKDKKLEEE--KRGQPNYEHLDEDLHVLISCEDTEERCHTRLEKAVERVQSLLRP 152
[Close]
BLAST of KH domain-containing protein vs. Ensembl Nematostella
Match: EDO28641 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T5W9])

HSP 1 Score: 52.7582 bits (125), Expect = 1.168e-8
Identity = 23/57 (40.35%), Postives = 39/57 (68.42%), Query Frame = 3 
Query:  213 SNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNR 383
            S  +VK+  K+  PV+++P  NF G++IGP G TL+E++  T  ++ V G GSM+++
Sbjct:   86 SGPRVKLVEKVYAPVKEFPKFNFVGRVIGPRGMTLREIESTTGCKLLVRGKGSMKDK 142
[Close]
BLAST of KH domain-containing protein vs. Ensembl Nematostella
Match: EDO45484 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RSV9])

HSP 1 Score: 51.6026 bits (122), Expect = 9.788e-8
Identity = 25/73 (34.25%), Postives = 48/73 (65.75%), Query Frame = 3 
Query:  225 VKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRN----RNKEMELIQTGDPKYQH 431
            +KI+ K+  P ++ P VNF G +IGP G TLK ++++T  ++ + G GS+++    R ++M+L+ +G+ +  H
Sbjct:  178 IKIQDKVMIPQDENPEVNFIGLLIGPRGNTLKNMEKETNAKIMIRGKGSIKDGKQGRGRDMQLMNSGEDEPLH 250
[Close]
BLAST of KH domain-containing protein vs. Ensembl Medaka
Match: KHDRBS3 (KH RNA binding domain containing, signal transduction associated 3 [Source:NCBI gene;Acc:101171680])

HSP 1 Score: 125.561 bits (314), Expect = 4.429e-33
Identity = 74/153 (48.37%), Postives = 101/153 (66.01%), Query Frame = 3 
Query:  201 IDTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTPD-PSEIQQP-LPPLSW----NEISFQQSVVG----RGRGMP 629
            ID + NK +K+  K+  PV+Q+P  NF GK++GP G +LK LQE T T+MS+LG GSMR++ KE EL Q+G+ KYQHLNE +H+ ++  A P+EAY ++  AL EIKK L PD   EI+Q  L  L++    +E +   SV G    RGRG P
Sbjct:   47 IDVVINKNMKLGQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEDTLTKMSILGKGSMRDKEKEEELRQSGEAKYQHLNEDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYNDEIRQAQLQELTYLNGGSEDAKVPSVRGKSAVRGRGTP 199
[Close]
BLAST of KH domain-containing protein vs. Ensembl Medaka
Match: KHDRBS3 (KH RNA binding domain containing, signal transduction associated 3 [Source:NCBI gene;Acc:101171680])

HSP 1 Score: 125.561 bits (314), Expect = 5.168e-33
Identity = 74/153 (48.37%), Postives = 101/153 (66.01%), Query Frame = 3 
Query:  201 IDTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTPD-PSEIQQP-LPPLSW----NEISFQQSVVG----RGRGMP 629
            ID + NK +K+  K+  PV+Q+P  NF GK++GP G +LK LQE T T+MS+LG GSMR++ KE EL Q+G+ KYQHLNE +H+ ++  A P+EAY ++  AL EIKK L PD   EI+Q  L  L++    +E +   SV G    RGRG P
Sbjct:   47 IDVVINKNMKLGQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEDTLTKMSILGKGSMRDKEKEEELRQSGEAKYQHLNEDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYNDEIRQAQLQELTYLNGGSEDAKVPSVRGKSAVRGRGTP 199
[Close]
BLAST of KH domain-containing protein vs. Ensembl Medaka
Match: khdrbs2 (KH RNA binding domain containing, signal transduction associated 2 [Source:NCBI gene;Acc:101155877])

HSP 1 Score: 123.635 bits (309), Expect = 2.065e-32
Identity = 69/175 (39.43%), Postives = 107/175 (61.14%), Query Frame = 3 
Query:  129 VACPNVHSQIRMEIRRL------REGIIDT-IDTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTPDPSE--IQQPLPPLSW----NEISFQQSVVGR 614
            V   ++H ++  EI +       ++G +   +D +SNK +K+  ++  PV QYP  NF GK++GP G ++K LQE+T  +MS+LG GSMR++ KE EL + GD KY HL+  +H+ ++  A P EAY ++S AL EIKK L PD ++   Q+ L  LS     +E S  ++ +GR
Sbjct:   22 VIHSSIHGKVLTEIEKYDGDELRKDGDVKKYLDIISNKNIKLSERVLIPVRQYPKFNFVGKLLGPRGNSMKRLQEETGVKMSILGKGSMRDKEKEEELRKGGDAKYAHLSNDLHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSLLNGSDESSRGRTALGR 196
[Close]
BLAST of KH domain-containing protein vs. Ensembl Medaka
Match: khdrbs2 (KH RNA binding domain containing, signal transduction associated 2 [Source:NCBI gene;Acc:101155877])

HSP 1 Score: 122.094 bits (305), Expect = 8.209e-32
Identity = 64/144 (44.44%), Postives = 94/144 (65.28%), Query Frame = 3 
Query:  201 IDTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTPDPSE--IQQPLPPLSW----NEISFQQSVVGR 614
            +D +SNK +K+  ++  PV QYP  NF GK++GP G ++K LQE+T  +MS+LG GSMR++ KE EL + GD KY HL+  +H+ ++  A P EAY ++S AL EIKK L PD ++   Q+ L  LS     +E S  ++ +GR
Sbjct:   50 LDIISNKNIKLSERVLIPVRQYPKFNFVGKLLGPRGNSMKRLQEETGVKMSILGKGSMRDKEKEEELRKGGDAKYAHLSNDLHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSLLNGSDESSRGRTALGR 193
[Close]
BLAST of KH domain-containing protein vs. Ensembl Medaka
Match: khdrbs1a (KH domain-containing, RNA-binding, signal transduction-associated protein 1 [Source:NCBI gene;Acc:101175524])

HSP 1 Score: 112.464 bits (280), Expect = 4.812e-28
Identity = 56/138 (40.58%), Postives = 89/138 (64.49%), Query Frame = 3 
Query:  156 IRMEIRRLREGIIDT-------IDTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTPDPSE 548
            +  EI R+++G           +D  + K +K++ ++  P++QYP VNF GK++GP G T+K LQE+T  ++SVLG GSMR++NKE EL + G+ KY HL   +H+ ++  A   EAY +++ A+ E+KK L P+P E
Sbjct:   28 LAAEIERIQKGETKKEPEKETYLDLFATKSLKLKERVLIPIKQYPRVNFVGKLLGPQGSTIKRLQEETGAKISVLGKGSMRDKNKEEELRKGGEAKYAHLAMELHVFIEVTAPIPEAYMRMAHAMDEVKKFLIPEPGE 165
[Close]
BLAST of KH domain-containing protein vs. Planmine SMEST
Match: SMESG000004103.1 (SMESG000004103.1)

HSP 1 Score: 512.686 bits (1319), Expect = 0.000e+0
Identity = 275/275 (100.00%), Postives = 275/275 (100.00%), Query Frame = 3 
Query:   48 METKKARQNPYQALIEAYEQELLTIDAVACPNVHSQIRMEIRRLREGIIDTIDTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTPDPSEIQQPLPPLSWNEISFQQSVVGRGRGMPNFNNDFXXXXXXXXXXXXXXXXXXXXXXXFKPPFDDHNMQFNGLPSFGSGYDHSSLMPKMPPSSQRFGQNEPYPKPHYPQF 872
            METKKARQNPYQALIEAYEQELLTIDAVACPNVHSQIRMEIRRLREGIIDTIDTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTPDPSEIQQPLPPLSWNEISFQQSVVGRGRGMPNFNNDFNLGGPGDRGRRNNRGGRLNGRGGFKPPFDDHNMQFNGLPSFGSGYDHSSLMPKMPPSSQRFGQNEPYPKPHYPQF
Sbjct:    1 METKKARQNPYQALIEAYEQELLTIDAVACPNVHSQIRMEIRRLREGIIDTIDTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTPDPSEIQQPLPPLSWNEISFQQSVVGRGRGMPNFNNDFNLGGPGDRGRRNNRGGRLNGRGGFKPPFDDHNMQFNGLPSFGSGYDHSSLMPKMPPSSQRFGQNEPYPKPHYPQF 275
[Close]
BLAST of KH domain-containing protein vs. Planmine SMEST
Match: SMESG000070471.1 (SMESG000070471.1)

HSP 1 Score: 192.586 bits (488), Expect = 2.558e-59
Identity = 94/161 (58.39%), Postives = 122/161 (75.78%), Query Frame = 3 
Query:   66 RQNPYQALIEAYEQELLTIDAVACPNVHSQIRMEIRRLREGIIDTIDTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTPDPSE 548
            R+N +Q LI+AYE EL  +D   CPN+   +R E+ RLR G+IDT+D L+ KK K+RTK+D PVE YP VNF GK++GP GKTLK +QEQT T+MS+LG+GS+RN  KE EL+ +GDPKY HL +R+HLQ+D +  PSEAY  IS AL E+KK + PDP+E
Sbjct:   35 RENQFQGLIDAYENELHGVDEATCPNIAMLVRNELFRLRGGVIDTVDVLTTKKTKVRTKVDIPVEAYPNVNFVGKLLGPAGKTLKTVQEQTNTKMSILGSGSLRNPEKEQELLNSGDPKYNHLRDRLHLQIDSIGNPSEAYYNISYALAEVKKVMIPDPNE 195
[Close]
BLAST of KH domain-containing protein vs. Planmine SMEST
Match: SMESG000057199.1 (SMESG000057199.1)

HSP 1 Score: 140.584 bits (353), Expect = 6.432e-40
Identity = 73/168 (43.45%), Postives = 108/168 (64.29%), Query Frame = 3 
Query:   81 QALIEAYEQELLTIDAVACPNVHSQIRMEIRRLREGIIDTIDTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTPD-PSEIQQPLPPLSWN 581
            Q+ I+  EQEL  ID    P + S    E+ RLR GI D++D  SNKKVKIR K+  PV+QYP VNF GK++GPG  TLK +Q QT T+M++LG G ++N+ +E +     D K     +++HLQ+D L  P+EAY ++S AL+E++  +  + PS + Q   P+++N
Sbjct:   13 QSQIDILEQELKEIDD-KYPYLASLGEAELHRLRGGIADSVDLFSNKKVKIRAKVHIPVDQYPSVNFVGKLLGPGASTLKGIQGQTNTKMTILGVGVLKNKKEEFQ--NKIDKKNISTKQKLHLQIDSLGTPAEAYYRLSHALVEVQNCMYHELPSGLVQSYHPVAYN 177
[Close]
BLAST of KH domain-containing protein vs. Planmine SMEST
Match: SMESG000057199.1 (SMESG000057199.1)

HSP 1 Score: 140.584 bits (353), Expect = 7.647e-40
Identity = 73/168 (43.45%), Postives = 108/168 (64.29%), Query Frame = 3 
Query:   81 QALIEAYEQELLTIDAVACPNVHSQIRMEIRRLREGIIDTIDTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTPD-PSEIQQPLPPLSWN 581
            Q+ I+  EQEL  ID    P + S    E+ RLR GI D++D  SNKKVKIR K+  PV+QYP VNF GK++GPG  TLK +Q QT T+M++LG G ++N+ +E +     D K     +++HLQ+D L  P+EAY ++S AL+E++  +  + PS + Q   P+++N
Sbjct:   13 QSQIDILEQELKEIDD-KYPYLASLGEAELHRLRGGIADSVDLFSNKKVKIRAKVHIPVDQYPSVNFVGKLLGPGASTLKGIQGQTNTKMTILGVGVLKNKKEEFQ--NKIDKKNISTKQKLHLQIDSLGTPAEAYYRLSHALVEVQNCMYHELPSGLVQSYHPVAYN 177
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BLAST of KH domain-containing protein vs. Planmine SMEST
Match: SMESG000057199.1 (SMESG000057199.1)

HSP 1 Score: 138.658 bits (348), Expect = 2.924e-39
Identity = 73/168 (43.45%), Postives = 109/168 (64.88%), Query Frame = 3 
Query:   81 QALIEAYEQELLTIDAVACPNVHSQIRMEIRRLREGIIDTIDTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHLQVDCLALPSEAYEKISKALIEIKKALTPD-PSEIQQPLPPLSWN 581
            Q+ I+  EQEL  ID    P + S   +E+ RLR GI D++D  SNKKVKIR K+  PV+QYP VNF GK++GPG  TLK +Q QT T+M++LG G ++N+ +E +     D K     +++HLQ+D L  P+EAY ++S AL+E++  +  + PS + Q   P+++N
Sbjct:   13 QSQIDILEQELKEIDD-KYPYLAS---LELHRLRGGIADSVDLFSNKKVKIRAKVHIPVDQYPSVNFVGKLLGPGASTLKGIQGQTNTKMTILGVGVLKNKKEEFQ--NKIDKKNISTKQKLHLQIDSLGTPAEAYYRLSHALVEVQNCMYHELPSGLVQSYHPVAYN 174
The following BLAST results are available for this feature:
BLAST of KH domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
KHDRBS31.304e-3248.44KH RNA binding domain containing, signal transduct... [more]
KHDRBS28.130e-3249.56KH RNA binding domain containing, signal transduct... [more]
KHDRBS35.349e-3144.90KH RNA binding domain containing, signal transduct... [more]
KHDRBS32.743e-3044.90KH RNA binding domain containing, signal transduct... [more]
KHDRBS12.961e-2943.45KH RNA binding domain containing, signal transduct... [more]
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BLAST of KH domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5
Match NameE-valueIdentityDescription
E02D9.11.130e-1732.33pep chromosome:WBcel235:I:6800386:6801970:1 gene:W... [more]
E02D9.11.273e-1735.85pep chromosome:WBcel235:I:6800386:6803841:1 gene:W... [more]
asd-21.884e-1636.63RNA-binding protein asd-2 [Source:UniProtKB/Swiss... [more]
asd-22.657e-1636.63RNA-binding protein asd-2 [Source:UniProtKB/Swiss... [more]
asd-24.203e-1636.63RNA-binding protein asd-2 [Source:UniProtKB/Swiss... [more]
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BLAST of KH domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5
Match NameE-valueIdentityDescription
qkr58E-32.494e-2947.32gene:FBgn0022984 transcript:FBtr0339538[more]
qkr58E-32.494e-2947.32gene:FBgn0022984 transcript:FBtr0307214[more]
qkr58E-32.494e-2947.32gene:FBgn0022984 transcript:FBtr0290254[more]
qkr58E-15.232e-2945.22gene:FBgn0022986 transcript:FBtr0339537[more]
qkr58E-16.948e-2945.22gene:FBgn0022986 transcript:FBtr0346637[more]
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BLAST of KH domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
khdrbs23.378e-3244.14KH domain containing, RNA binding, signal transduc... [more]
khdrbs1b3.438e-2943.61KH domain containing, RNA binding, signal transduc... [more]
khdrbs1a5.456e-2841.67KH domain containing, RNA binding, signal transduc... [more]
khdrbs1a9.311e-2841.67KH domain containing, RNA binding, signal transduc... [more]
khdrbs1a9.952e-2841.67KH domain containing, RNA binding, signal transduc... [more]
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BLAST of KH domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
KHDRBS38.814e-3343.29KH domain containing, RNA binding, signal transduc... [more]
pdc1.496e-2945.26phosducin [Source:Xenbase;Acc:XB-GENE-983832][more]
khdrbs22.108e-2941.33KH domain containing, RNA binding, signal transduc... [more]
pdc5.273e-2944.85phosducin [Source:Xenbase;Acc:XB-GENE-983832][more]
spsb37.662e-1735.04splA/ryanodine receptor domain and SOCS box contai... [more]
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BLAST of KH domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Khdrbs24.225e-3249.56KH domain containing, RNA binding, signal transduc... [more]
Khdrbs31.471e-3050.00KH domain containing, RNA binding, signal transduc... [more]
Khdrbs31.471e-3050.00KH domain containing, RNA binding, signal transduc... [more]
Khdrbs31.471e-3050.00KH domain containing, RNA binding, signal transduc... [more]
Khdrbs32.134e-3050.00KH domain containing, RNA binding, signal transduc... [more]
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BLAST of KH domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|P13230|GRP33_ARTSA9.769e-3341.10Glycine-rich protein GRP33 OS=Artemia salina OX=85... [more]
sp|Q08BJ2|KHDR2_DANRE2.550e-3144.14KH domain-containing, RNA-binding, signal transduc... [more]
sp|Q9WU01|KHDR2_MOUSE2.955e-3149.56KH domain-containing, RNA-binding, signal transduc... [more]
sp|Q5VWX1|KHDR2_HUMAN3.904e-3149.56KH domain-containing, RNA-binding, signal transduc... [more]
sp|Q920F3|KHDR2_RAT4.196e-3149.17KH domain-containing, RNA-binding, signal transduc... [more]
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BLAST of KH domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
H9CXT99.198e-5658.39KHD-1 OS=Schmidtea mediterranea OX=79327 PE=2 SV=1[more]
A0A5J4NM057.916e-5251.52KH domain-containing, RNA-binding, signal transduc... [more]
A0A4S2M5941.549e-5151.43KH domain-containing protein OS=Opisthorchis felin... [more]
A0A4S2M5971.598e-5152.66KH domain-containing protein OS=Opisthorchis felin... [more]
A0A4V3SG992.307e-5151.43KH domain-containing protein OS=Opisthorchis felin... [more]
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BLAST of KH domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
khdrbs21.906e-3346.21KH domain containing, RNA binding, signal transduc... [more]
khdrbs23.925e-3346.21KH domain containing, RNA binding, signal transduc... [more]
khdrbs24.083e-3344.83KH domain containing, RNA binding, signal transduc... [more]
khdrbs29.242e-3346.21KH domain containing, RNA binding, signal transduc... [more]
khdrbs21.718e-3246.21KH domain containing, RNA binding, signal transduc... [more]
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BLAST of KH domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 3
Match NameE-valueIdentityDescription
KHDRBS31.950e-3348.44KH RNA binding domain containing, signal transduct... [more]
khdrbs23.656e-3045.83KH domain containing, RNA binding, signal transduc... [more]
khdrbs1a6.604e-2639.16KH domain containing, RNA binding, signal transduc... [more]
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BLAST of KH domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1
Match NameE-valueIdentityDescription
MSL55.775e-930.36Component of commitment complex; which defines fir... [more]
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BLAST of KH domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 4
Match NameE-valueIdentityDescription
EDO441276.711e-2747.66Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO302975.835e-1734.26Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO286411.168e-840.35Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO454849.788e-834.25Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of KH domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5
Match NameE-valueIdentityDescription
KHDRBS34.429e-3348.37KH RNA binding domain containing, signal transduct... [more]
KHDRBS35.168e-3348.37KH RNA binding domain containing, signal transduct... [more]
khdrbs22.065e-3239.43KH RNA binding domain containing, signal transduct... [more]
khdrbs28.209e-3244.44KH RNA binding domain containing, signal transduct... [more]
khdrbs1a4.812e-2840.58KH domain-containing, RNA-binding, signal transduc... [more]
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BLAST of KH domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000004103.10.000e+0100.00SMESG000004103.1[more]
SMESG000070471.12.558e-5958.39SMESG000070471.1[more]
SMESG000057199.16.432e-4043.45SMESG000057199.1[more]
SMESG000057199.17.647e-4043.45SMESG000057199.1[more]
SMESG000057199.12.924e-3943.45SMESG000057199.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30031080 ID=SMED30031080|Name=KH domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=955bp
CTCATTTTCAGTTTTGTTTTAAATATTCATTTTTTATAATTGTTAAGATG
GAGACTAAAAAAGCAAGACAAAATCCATACCAAGCTCTTATTGAAGCTTA
TGAACAAGAATTACTAACCATTGATGCTGTAGCATGTCCTAATGTACATA
GTCAAATAAGAATGGAAATTCGGAGACTTCGTGAAGGAATTATTGATACA
ATTGATACTTTATCAAATAAAAAAGTTAAAATTCGTACTAAAATAGACTT
CCCAGTTGAACAGTATCCAGGTGTTAATTTCCCCGGGAAAATTATTGGTC
CAGGTGGTAAAACATTAAAAGAACTCCAAGAACAAACTGAAACCAGAATG
TCAGTATTAGGAGCTGGCTCCATGAGAAATCGGAATAAAGAAATGGAATT
AATTCAGACTGGTGATCCAAAATATCAGCATTTGAATGAAAGAATGCATT
TACAAGTTGATTGTTTAGCTCTTCCTTCTGAAGCATACGAGAAAATCTCA
AAAGCTTTAATAGAAATTAAGAAGGCATTAACTCCGGATCCCAGTGAAAT
TCAGCAACCACTGCCACCACTTAGTTGGAATGAAATCAGTTTTCAGCAGT
CTGTTGTTGGGAGAGGCCGGGGGATGCCTAACTTTAATAACGATTTTAAT
CTCGGTGGCCCAGGTGACAGGGGCAGGAGAAATAACAGAGGCGGTAGACT
TAATGGTAGAGGAGGTTTTAAACCCCCTTTTGATGATCATAATATGCAAT
TTAATGGTCTGCCGTCATTTGGTTCTGGTTATGATCACAGTTCGCTTATG
CCCAAAATGCCACCAAGTTCTCAAAGGTTTGGTCAAAATGAACCATATCC
AAAGCCACATTATCCTCAATTTTAGCTATTAAATGTTTTTCAATGATGTT
CTCTTTGTTGTCTTATTAGTAAATTTGTATAGACTTCAGTATTTTTAAAA
GAATA
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protein sequence of SMED30031080-orf-1

>SMED30031080-orf-1 ID=SMED30031080-orf-1|Name=SMED30031080-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=291bp
HFQFCFKYSFFIIVKMETKKARQNPYQALIEAYEQELLTIDAVACPNVHS
QIRMEIRRLREGIIDTIDTLSNKKVKIRTKIDFPVEQYPGVNFPGKIIGP
GGKTLKELQEQTETRMSVLGAGSMRNRNKEMELIQTGDPKYQHLNERMHL
QVDCLALPSEAYEKISKALIEIKKALTPDPSEIQQPLPPLSWNEISFQQS
VVGRGRGMPNFNNDFNLGGPGDRGRRNNRGGRLNGRGGFKPPFDDHNMQF
NGLPSFGSGYDHSSLMPKMPPSSQRFGQNEPYPKPHYPQF*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000026gut
PLANA:0000099neuron
PLANA:0000103central nervous system
PLANA:0000204ovary
PLANA:0000208testis
PLANA:0000429neoblast
PLANA:0002109X1 cell
PLANA:0002111X2 cell
PLANA:0002142parenchyma
Vocabulary: INTERPRO
TermDefinition
IPR036612KH_dom_type_1_sf
IPR004087KH_dom
IPR004088KH_dom_type_1
Vocabulary: molecular function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004087K Homology domainSMARTSM00322kh_6coord: 75..177
e-value: 1.3E-5
score: 34.6
IPR036612K Homology domain, type 1 superfamilyGENE3DG3DSA:3.30.1370.10coord: 21..197
e-value: 4.4E-36
score: 126.8
IPR036612K Homology domain, type 1 superfamilySUPERFAMILYSSF54791Eukaryotic type KH-domain (KH-domain type I)coord: 78..182
IPR004088K Homology domain, type 1PFAMPF00013KH_1coord: 95..139
e-value: 3.0E-7
score: 30.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 267..290
NoneNo IPR availablePANTHERPTHR11208:SF43GH05812P-RELATEDcoord: 34..190
NoneNo IPR availablePANTHERPTHR11208RNA-BINDING PROTEIN RELATEDcoord: 34..190
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 95..118
score: 8.555