SMED30031063

Overview
NameSMED30031063
Smed IDSMED30031063
Length (bp)2120
Neoblast Clusters

Zeng et. al., 2018



 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020



SMED30031063

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 7

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
nervous systemSMED30031063h1SMcG0005925 dd_Smed_v4_79849_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30031063h1SMcG0005925 dd_Smed_v4_79849_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30031063h1SMcG0005925 dd_Smed_v4_79849_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
reproductive organSMED30031063h1SMcG0005925 Contig9987uc_Smed_v2PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
reproductive organSMED30031063h1SMcG0005925 Contig9987newmark_estsPMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
reproductive organSMED30031063h1SMcG0005925 Contig17639newmark_estsPMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
reproductive organSMED30031063h1SMcG0005925 Contig17639uc_Smed_v2PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30031063 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.006146:7518..9637 +10537
v31.024153:5309..7452 +10490
Homology
[Close]
BLAST of SMED30031063 vs. Planmine SMEST
Match: SMESG000031073.1 (SMESG000031073.1)

HSP 1 Score: 1037.71 bits (2682), Expect = 0.000e+0
Identity = 700/714 (98.04%), Postives = 702/714 (98.32%), Query Frame = 1 
Query:    1 VNFKEEKVKYXXXXXXXXXXXXXXXXXXXXXXQKEENLRITEKQKTEEMDRKMFEQMQKEKNITKMCLESQKIIEQREQSLMIDKYKTSLXXXXXXXXXXXXXXXXXQTETEKSFFTSTKESPKKVNKGINSDIVLKESVRSVKTFARXXXXXXXXXXXXXXVSMKNIGNERNNEFDNPKKVYSILKTDSKELEKENPVSENPIEIVKTSKVKEILDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEKPIILKTGDKNPPKSETIIFGETAHEEEVQKNLEIPNNNKEAPLTVQEPRAKSRIKINPPMKRNNFQSIQKNGINKKSPLRTSDIKYNRIQNPNKKPIIKHSNXXXXXXXXXXXXXXSEDELVKSEIP--------IDNKLKIISPEKESFENPTKNKKLICCQKVNTDKNKKERENKTYDENMKTLAMQXXXXXXXXXXXXXXXXYNLNEALLEDNKRNLNEDKMDKSFLCCKKVNEKDNKTKDTSMENQFDEQQNINEISARTAKMNTGKPSPRKYMSNDQQKSDKIETDVLRLKTTENKVSKDNEKSGHKDNESVQSQVVLSEKSEKVNCISACCSRNIKETPSKPTIENEINNKDLVILITEPNDSEIQKTKNYKPNMKFDNVKQFPILTEIXXXXXXXXXXXGHHKNCMCCQMXXXXXXXXXXXXXXXXXNIENQPIFIEKQQELQHKTVDEKKERKKYS 2118
            VNFKEEKVKYLNEIRNKEEERKRLKALCEEERQKEENLRITEKQKTEEMDRKMFEQMQKEKNITKMCLESQKIIEQREQSLMIDKYKTSLSSEKIENK EAKINENSQTETEKSFFTSTKESPKKVNKGINSDIVLKESVRSVKTFARKIPKTPIIGKKPLKVSMKNIGNERNNEFDNPKKVYSILKTDSKELEKENPVSE+PIEIVKTSKVKEILDSQEQKETT ETSKIKPKPKKGFKCCEKTKIDEKPIILKTGDKNPPKSETIIFGETAHEEEVQKNLEIPNNNKEAPLTVQEPRAKSRIKINPPMKRNNFQSIQKNGINKKSPLRTSDIKYNRIQNPNKKPI+KHSNKTPTKDTKKP TVKSEDELVKSEIP        ID KLKIISPEKESFENPTKNKKLICCQKVNTDKNKKERENKTYDENMKTLAMQKNKSSLLKDKKKFGSSYNLNEALLEDNKRNLNEDKMDKSFLCCKKVNEKDNKTKDTSMENQFDEQQNINEISARTAKMNTGKPSPRKYMSNDQQKSDKIETDVLRLKTTENKVSKDNEKSGHKDNESVQSQVVLSEKSEKVNCISACCSRNIKETPSKPTIENEINNKDLVILITEPNDSEIQKTKNYKPNMKFDNVKQFPILTEISSKESDKDKKKGHHKNCMCCQMKGSVSSVKPEKSSSKDSNIENQPIFIEKQQELQHKTVDEKKERKKYS
Sbjct:  213 VNFKEEKVKYLNEIRNKEEERKRLKALCEEERQKEENLRITEKQKTEEMDRKMFEQMQKEKNITKMCLESQKIIEQREQSLMIDKYKTSLSSEKIENKNEAKINENSQTETEKSFFTSTKESPKKVNKGINSDIVLKESVRSVKTFARKIPKTPIIGKKPLKVSMKNIGNERNNEFDNPKKVYSILKTDSKELEKENPVSEHPIEIVKTSKVKEILDSQEQKETTGETSKIKPKPKKGFKCCEKTKIDEKPIILKTGDKNPPKSETIIFGETAHEEEVQKNLEIPNNNKEAPLTVQEPRAKSRIKINPPMKRNNFQSIQKNGINKKSPLRTSDIKYNRIQNPNKKPILKHSNKTPTKDTKKPKTVKSEDELVKSEIPENKKSEIPIDYKLKIISPEKESFENPTKNKKLICCQKVNTDKNKKERENKTYDENMKTLAMQKNKSSLLKDKKKFGSSYNLNEALLEDNKRNLNEDKMDKSFLCCKKVNEKDNKTKDTSMENQFDEQQNINEISARTAKMNTGKPSPRKYMSNDQQKSDKIETDVLRLKTTENKVSKDNEKSGHKDNESVQSQVVLSEKSEKVNCISACCSRNIKETPSKPTIENEINNKDLVILITEPNDSEIQKTKNYKPNMKFDNVKQFPILTEISSKESDKDKKKGHHKNCMCCQMKGSVSSVKPEKSSSKDSNIENQPIFIEKQQELQHKTVDEKKERKKYS 926
[Close]
BLAST of SMED30031063 vs. Planmine SMEST
Match: SMESG000031073.1 (SMESG000031073.1)

HSP 1 Score: 1037.71 bits (2682), Expect = 0.000e+0
Identity = 700/714 (98.04%), Postives = 702/714 (98.32%), Query Frame = 1 
Query:    1 VNFKEEKVKYXXXXXXXXXXXXXXXXXXXXXXQKEENLRITEKQKTEEMDRKMFEQMQKEKNITKMCLESQKIIEQREQSLMIDKYKTSLXXXXXXXXXXXXXXXXXQTETEKSFFTSTKESPKKVNKGINSDIVLKESVRSVKTFARXXXXXXXXXXXXXXVSMKNIGNERNNEFDNPKKVYSILKTDSKELEKENPVSENPIEIVKTSKVKEILDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEKPIILKTGDKNPPKSETIIFGETAHEEEVQKNLEIPNNNKEAPLTVQEPRAKSRIKINPPMKRNNFQSIQKNGINKKSPLRTSDIKYNRIQNPNKKPIIKHSNXXXXXXXXXXXXXXSEDELVKSEIP--------IDNKLKIISPEKESFENPTKNKKLICCQKVNTDKNKKERENKTYDENMKTLAMQXXXXXXXXXXXXXXXXYNLNEALLEDNKRNLNEDKMDKSFLCCKKVNEKDNKTKDTSMENQFDEQQNINEISARTAKMNTGKPSPRKYMSNDQQKSDKIETDVLRLKTTENKVSKDNEKSGHKDNESVQSQVVLSEKSEKVNCISACCSRNIKETPSKPTIENEINNKDLVILITEPNDSEIQKTKNYKPNMKFDNVKQFPILTEIXXXXXXXXXXXGHHKNCMCCQMXXXXXXXXXXXXXXXXXNIENQPIFIEKQQELQHKTVDEKKERKKYS 2118
            VNFKEEKVKYLNEIRNKEEERKRLKALCEEERQKEENLRITEKQKTEEMDRKMFEQMQKEKNITKMCLESQKIIEQREQSLMIDKYKTSLSSEKIENK EAKINENSQTETEKSFFTSTKESPKKVNKGINSDIVLKESVRSVKTFARKIPKTPIIGKKPLKVSMKNIGNERNNEFDNPKKVYSILKTDSKELEKENPVSE+PIEIVKTSKVKEILDSQEQKETT ETSKIKPKPKKGFKCCEKTKIDEKPIILKTGDKNPPKSETIIFGETAHEEEVQKNLEIPNNNKEAPLTVQEPRAKSRIKINPPMKRNNFQSIQKNGINKKSPLRTSDIKYNRIQNPNKKPI+KHSNKTPTKDTKKP TVKSEDELVKSEIP        ID KLKIISPEKESFENPTKNKKLICCQKVNTDKNKKERENKTYDENMKTLAMQKNKSSLLKDKKKFGSSYNLNEALLEDNKRNLNEDKMDKSFLCCKKVNEKDNKTKDTSMENQFDEQQNINEISARTAKMNTGKPSPRKYMSNDQQKSDKIETDVLRLKTTENKVSKDNEKSGHKDNESVQSQVVLSEKSEKVNCISACCSRNIKETPSKPTIENEINNKDLVILITEPNDSEIQKTKNYKPNMKFDNVKQFPILTEISSKESDKDKKKGHHKNCMCCQMKGSVSSVKPEKSSSKDSNIENQPIFIEKQQELQHKTVDEKKERKKYS
Sbjct:  212 VNFKEEKVKYLNEIRNKEEERKRLKALCEEERQKEENLRITEKQKTEEMDRKMFEQMQKEKNITKMCLESQKIIEQREQSLMIDKYKTSLSSEKIENKNEAKINENSQTETEKSFFTSTKESPKKVNKGINSDIVLKESVRSVKTFARKIPKTPIIGKKPLKVSMKNIGNERNNEFDNPKKVYSILKTDSKELEKENPVSEHPIEIVKTSKVKEILDSQEQKETTGETSKIKPKPKKGFKCCEKTKIDEKPIILKTGDKNPPKSETIIFGETAHEEEVQKNLEIPNNNKEAPLTVQEPRAKSRIKINPPMKRNNFQSIQKNGINKKSPLRTSDIKYNRIQNPNKKPILKHSNKTPTKDTKKPKTVKSEDELVKSEIPENKKSEIPIDYKLKIISPEKESFENPTKNKKLICCQKVNTDKNKKERENKTYDENMKTLAMQKNKSSLLKDKKKFGSSYNLNEALLEDNKRNLNEDKMDKSFLCCKKVNEKDNKTKDTSMENQFDEQQNINEISARTAKMNTGKPSPRKYMSNDQQKSDKIETDVLRLKTTENKVSKDNEKSGHKDNESVQSQVVLSEKSEKVNCISACCSRNIKETPSKPTIENEINNKDLVILITEPNDSEIQKTKNYKPNMKFDNVKQFPILTEISSKESDKDKKKGHHKNCMCCQMKGSVSSVKPEKSSSKDSNIENQPIFIEKQQELQHKTVDEKKERKKYS 925
[Close]
BLAST of SMED30031063 vs. Planmine SMEST
Match: SMESG000031073.1 (SMESG000031073.1)

HSP 1 Score: 1037.71 bits (2682), Expect = 0.000e+0
Identity = 700/714 (98.04%), Postives = 702/714 (98.32%), Query Frame = 1 
Query:    1 VNFKEEKVKYXXXXXXXXXXXXXXXXXXXXXXQKEENLRITEKQKTEEMDRKMFEQMQKEKNITKMCLESQKIIEQREQSLMIDKYKTSLXXXXXXXXXXXXXXXXXQTETEKSFFTSTKESPKKVNKGINSDIVLKESVRSVKTFARXXXXXXXXXXXXXXVSMKNIGNERNNEFDNPKKVYSILKTDSKELEKENPVSENPIEIVKTSKVKEILDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEKPIILKTGDKNPPKSETIIFGETAHEEEVQKNLEIPNNNKEAPLTVQEPRAKSRIKINPPMKRNNFQSIQKNGINKKSPLRTSDIKYNRIQNPNKKPIIKHSNXXXXXXXXXXXXXXSEDELVKSEIP--------IDNKLKIISPEKESFENPTKNKKLICCQKVNTDKNKKERENKTYDENMKTLAMQXXXXXXXXXXXXXXXXYNLNEALLEDNKRNLNEDKMDKSFLCCKKVNEKDNKTKDTSMENQFDEQQNINEISARTAKMNTGKPSPRKYMSNDQQKSDKIETDVLRLKTTENKVSKDNEKSGHKDNESVQSQVVLSEKSEKVNCISACCSRNIKETPSKPTIENEINNKDLVILITEPNDSEIQKTKNYKPNMKFDNVKQFPILTEIXXXXXXXXXXXGHHKNCMCCQMXXXXXXXXXXXXXXXXXNIENQPIFIEKQQELQHKTVDEKKERKKYS 2118
            VNFKEEKVKYLNEIRNKEEERKRLKALCEEERQKEENLRITEKQKTEEMDRKMFEQMQKEKNITKMCLESQKIIEQREQSLMIDKYKTSLSSEKIENK EAKINENSQTETEKSFFTSTKESPKKVNKGINSDIVLKESVRSVKTFARKIPKTPIIGKKPLKVSMKNIGNERNNEFDNPKKVYSILKTDSKELEKENPVSE+PIEIVKTSKVKEILDSQEQKETT ETSKIKPKPKKGFKCCEKTKIDEKPIILKTGDKNPPKSETIIFGETAHEEEVQKNLEIPNNNKEAPLTVQEPRAKSRIKINPPMKRNNFQSIQKNGINKKSPLRTSDIKYNRIQNPNKKPI+KHSNKTPTKDTKKP TVKSEDELVKSEIP        ID KLKIISPEKESFENPTKNKKLICCQKVNTDKNKKERENKTYDENMKTLAMQKNKSSLLKDKKKFGSSYNLNEALLEDNKRNLNEDKMDKSFLCCKKVNEKDNKTKDTSMENQFDEQQNINEISARTAKMNTGKPSPRKYMSNDQQKSDKIETDVLRLKTTENKVSKDNEKSGHKDNESVQSQVVLSEKSEKVNCISACCSRNIKETPSKPTIENEINNKDLVILITEPNDSEIQKTKNYKPNMKFDNVKQFPILTEISSKESDKDKKKGHHKNCMCCQMKGSVSSVKPEKSSSKDSNIENQPIFIEKQQELQHKTVDEKKERKKYS
Sbjct:  180 VNFKEEKVKYLNEIRNKEEERKRLKALCEEERQKEENLRITEKQKTEEMDRKMFEQMQKEKNITKMCLESQKIIEQREQSLMIDKYKTSLSSEKIENKNEAKINENSQTETEKSFFTSTKESPKKVNKGINSDIVLKESVRSVKTFARKIPKTPIIGKKPLKVSMKNIGNERNNEFDNPKKVYSILKTDSKELEKENPVSEHPIEIVKTSKVKEILDSQEQKETTGETSKIKPKPKKGFKCCEKTKIDEKPIILKTGDKNPPKSETIIFGETAHEEEVQKNLEIPNNNKEAPLTVQEPRAKSRIKINPPMKRNNFQSIQKNGINKKSPLRTSDIKYNRIQNPNKKPILKHSNKTPTKDTKKPKTVKSEDELVKSEIPENKKSEIPIDYKLKIISPEKESFENPTKNKKLICCQKVNTDKNKKERENKTYDENMKTLAMQKNKSSLLKDKKKFGSSYNLNEALLEDNKRNLNEDKMDKSFLCCKKVNEKDNKTKDTSMENQFDEQQNINEISARTAKMNTGKPSPRKYMSNDQQKSDKIETDVLRLKTTENKVSKDNEKSGHKDNESVQSQVVLSEKSEKVNCISACCSRNIKETPSKPTIENEINNKDLVILITEPNDSEIQKTKNYKPNMKFDNVKQFPILTEISSKESDKDKKKGHHKNCMCCQMKGSVSSVKPEKSSSKDSNIENQPIFIEKQQELQHKTVDEKKERKKYS 893
The following BLAST results are available for this feature:
BLAST of SMED30031063 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30031063 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30031063 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30031063 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30031063 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30031063 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30031063 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30031063 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30031063 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30031063 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30031063 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30031063 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30031063 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30031063 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3
Match NameE-valueIdentityDescription
SMESG000031073.10.000e+098.04SMESG000031073.1[more]
SMESG000031073.10.000e+098.04SMESG000031073.1[more]
SMESG000031073.10.000e+098.04SMESG000031073.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30031063 ID=SMED30031063|Name=SMED30031063|organism=Schmidtea mediterranea sexual|type=transcript|length=2120bp
GTAAATTTCAAAGAAGAAAAGGTCAAATATTTGAACGAAATTCGAAACAA
AGAAGAAGAAAGAAAAAGACTCAAAGCGTTATGTGAAGAAGAGAGACAAA
AAGAAGAAAATTTAAGAATTACTGAGAAACAAAAAACGGAAGAAATGGAT
AGAAAAATGTTTGAACAGATGCAGAAAGAAAAAAATATTACTAAAATGTG
TTTAGAAAGTCAAAAGATCATAGAACAAAGAGAACAAAGCCTAATGATAG
ACAAATATAAGACGAGTCTAAGTTCTGAAAAAATTGAAAACAAAAAAGAA
GCAAAAATAAATGAGAATTCCCAAACTGAAACAGAAAAATCTTTTTTCAC
ATCAACTAAAGAATCTCCAAAAAAGGTCAACAAGGGCATAAATTCTGACA
TTGTGTTAAAAGAATCAGTTAGAAGTGTCAAAACCTTTGCAAGAAAGATC
CCGAAAACACCAATCATAGGAAAGAAACCCTTAAAGGTTAGTATGAAAAA
CATTGGAAATGAAAGAAACAATGAATTTGATAACCCAAAGAAAGTATATT
CTATTCTTAAAACAGATTCAAAAGAATTAGAAAAAGAAAATCCAGTTTCC
GAAAATCCAATAGAAATCGTCAAAACTTCAAAAGTCAAAGAAATTTTAGA
TTCCCAAGAACAAAAAGAAACAACTGAGGAAACTTCAAAAATCAAACCGA
AACCTAAAAAAGGTTTCAAATGCTGTGAAAAAACTAAAATTGACGAAAAG
CCAATAATCTTAAAAACTGGTGATAAAAACCCACCGAAAAGCGAAACAAT
AATATTTGGGGAAACGGCTCACGAAGAGGAAGTTCAGAAAAATCTAGAAA
TACCGAATAACAATAAAGAAGCACCTTTAACAGTTCAAGAACCAAGGGCA
AAATCTCGAATAAAAATCAATCCTCCAATGAAACGAAATAATTTCCAAAG
TATTCAGAAAAACGGAATAAATAAAAAATCTCCGCTGCGCACTTCAGATA
TTAAATACAACAGAATACAGAATCCCAATAAAAAGCCAATAATCAAACAC
TCAAACAAAACACCAACAAAAGATACAAAAAAGCCCGCAACAGTCAAATC
TGAAGATGAATTGGTGAAATCTGAAATTCCCATTGATAACAAATTGAAAA
TTATTTCTCCGGAAAAAGAGTCATTTGAAAATCCTACAAAAAATAAAAAA
CTTATCTGTTGTCAAAAGGTAAATACTGACAAAAATAAAAAAGAAAGAGA
AAATAAAACTTATGATGAAAATATGAAAACATTGGCAATGCAGAAAAACA
AAAGCTCATTATTAAAAGATAAAAAAAAATTTGGCTCATCATATAATTTA
AACGAAGCTCTTTTAGAGGATAACAAAAGAAATTTGAATGAGGACAAAAT
GGATAAAAGCTTTCTATGTTGTAAAAAAGTTAATGAAAAAGACAACAAAA
CAAAAGATACATCAATGGAAAACCAATTTGATGAACAACAAAATATTAAT
GAAATCAGTGCAAGAACAGCCAAAATGAACACTGGTAAACCAAGCCCACG
AAAATATATGTCAAATGATCAGCAAAAATCCGATAAAATCGAAACAGATG
TTCTCCGTCTTAAGACTACTGAAAACAAAGTTTCCAAAGACAATGAAAAG
TCTGGTCATAAAGACAATGAATCAGTTCAAAGTCAAGTAGTTCTTTCAGA
GAAATCAGAAAAGGTCAATTGCATTAGTGCTTGCTGTTCTCGTAATATAA
AGGAAACCCCGTCAAAACCCACAATAGAGAATGAAATTAACAATAAAGAC
CTAGTGATACTAATCACAGAACCAAATGATTCAGAAATACAAAAGACAAA
AAATTACAAACCTAATATGAAATTTGATAATGTCAAACAGTTTCCAATTT
TAACCGAAATTTCAAGCAAGGAATCTGATAAAGATAAGAAAAAAGGCCAC
CACAAAAATTGCATGTGTTGTCAAATGAAAGGTTCAGTTTCTTCAGTTAA
ACCTGAGAAATCATCATCCAAAGATAGTAATATAGAAAACCAACCCATTT
TCATCGAGAAACAGCAAGAATTACAACATAAAACTGTCGATGAAAAGAAA
GAGCGCAAAAAATATTCACC
back to top

protein sequence of SMED30031063-orf-1

>SMED30031063-orf-1 ID=SMED30031063-orf-1|Name=SMED30031063-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=706bp
VNFKEEKVKYLNEIRNKEEERKRLKALCEEERQKEENLRITEKQKTEEMD
RKMFEQMQKEKNITKMCLESQKIIEQREQSLMIDKYKTSLSSEKIENKKE
AKINENSQTETEKSFFTSTKESPKKVNKGINSDIVLKESVRSVKTFARKI
PKTPIIGKKPLKVSMKNIGNERNNEFDNPKKVYSILKTDSKELEKENPVS
ENPIEIVKTSKVKEILDSQEQKETTEETSKIKPKPKKGFKCCEKTKIDEK
PIILKTGDKNPPKSETIIFGETAHEEEVQKNLEIPNNNKEAPLTVQEPRA
KSRIKINPPMKRNNFQSIQKNGINKKSPLRTSDIKYNRIQNPNKKPIIKH
SNKTPTKDTKKPATVKSEDELVKSEIPIDNKLKIISPEKESFENPTKNKK
LICCQKVNTDKNKKERENKTYDENMKTLAMQKNKSSLLKDKKKFGSSYNL
NEALLEDNKRNLNEDKMDKSFLCCKKVNEKDNKTKDTSMENQFDEQQNIN
EISARTAKMNTGKPSPRKYMSNDQQKSDKIETDVLRLKTTENKVSKDNEK
SGHKDNESVQSQVVLSEKSEKVNCISACCSRNIKETPSKPTIENEINNKD
LVILITEPNDSEIQKTKNYKPNMKFDNVKQFPILTEISSKESDKDKKKGH
HKNCMCCQMKGSVSSVKPEKSSSKDSNIENQPIFIEKQQELQHKTVDEKK
ERKKYS
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002089reproductive organ
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 7..44
NoneNo IPR availableCOILSCoilCoilcoord: 412..439
NoneNo IPR availableCOILSCoilCoilcoord: 92..112
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 309..349
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 97..123
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 217..237
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 351..372
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 508..570
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 698..714
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 530..564
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 669..714
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 669..696
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 508..529
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 277..372
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 108..123